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{{f5samples
{{f5samples
|id=FF:12236-129G4
|DRA_sample_Accession=CAGE@SAMD00005529
|name=amniotic membrane cells, donor2
|accession_numbers=CAGE;DRX008538;DRR009410;DRZ000835;DRZ002220;DRZ012185;DRZ013570
|sample_id=12236
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|rna_tube_id=129G4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
|rna_box=129
|rna_position=G4
|sample_cell_lot=A 7/14
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=amnion
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.89
|rna_od260/280=2.01
|sample_cell_type=unclassifiable
|sample_cell_line=
|sample_collaboration=Hiroo Toyoda (Tokyo University of Pharm and life sciences)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=4.86972
|rna_concentration=0.18036
|sample_note=Jan 20 librarian
|profile_hcage=CNhs12503,LSID918,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002537
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000158,UBERON:0000305,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0004120,UBERON:0004121,UBERON:0004871,UBERON:0004923,UBERON:0005423,UBERON:0005631
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164528445..164528459,+!p2@PBX1!0.73!14.85!PBX1;;chr19:22235279..22235301,+!p1@ZNF257!0.72!8.61!ZNF257;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.75!NR2F2;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.25!PBX1;;chr20:32274150..32274166,-!p2@E2F1!0.71!8.32!E2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.02!NR2F2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.71!4.16!SMARCE1;;chrX:56258900..56258917,+!p4@KLF8!0.71!4.16!KLF8;;chr19:49140609..49140643,-!p1@DBP!0.70!25.24!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.70!16.63!PAWR;;chr2:46602879..46602899,+!p8@EPAS1!0.70!5.05!EPAS1;;chr3:170075124..170075136,+!p4@SKIL!0.69!5.64!SKIL;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.35!GRHL1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.86!MYCN;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.86!SOX15;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.86!MAFK;;chr9:110252035..110252057,-!p1@KLF4!0.68!69.49!KLF4;;chr17:53342311..53342400,+!p1@HLF!0.68!4.45!HLF;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.59!FOSB;;chr11:2292226..2292270,-!p1@ASCL2!0.66!3.56!ASCL2;;chr14:33403881..33403924,+!p1@NPAS3!0.66!3.56!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!0.66!3.56!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.66!3.56!HIC2;;chr12:80084303..80084332,-!p1@PAWR!0.65!23.46!PAWR;;chr2:238600933..238600985,+!p3@LRRFIP1!0.65!21.98!LRRFIP1;;chr19:36391434..36391450,-!p1@NFKBID!0.65!7.42!NFKBID;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.64!4.75!ZNF700;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.45!L3MBTL4;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.45!NCOA7;;chr8:57123815..57123867,-!p1@PLAG1!0.63!15.44!PLAG1;;chr8:102217679..102217719,-!p2@ZNF706!0.63!13.07!ZNF706;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.53!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.27!IKZF2;;chr2:5832493..5832507,+!p2@SOX11!0.63!3.27!SOX11;;chr3:24536231..24536249,-!p4@THRB!0.63!3.27!THRB;;chr3:24536332..24536358,-!p2@THRB!0.63!3.27!THRB;;chr4:149363475..149363492,-!p2@NR3C2!0.63!3.27!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.63!3.27!HOPX;;chr10:114710430..114710470,+!p30@TCF7L2!0.63!3.27!TCF7L2;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.27!NR3C1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.25!ZNF439;;chr15:67418047..67418093,+!p4@SMAD3!0.62!4.16!SMAD3;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.44!ZNF521;;chr1:41174988..41175047,+!p4@NFYC!0.61!9.21!NFYC;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.05!ZNF702P;;chrX:107018969..107019024,-!p6@TSC22D3!0.60!4.45!TSC22D3;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.86!MEIS1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.60!2.97!LRRFIP1;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.60!2.97!ZBTB8B;;chr6:28048343..28048354,+!p1@ZNF165!0.60!2.97!ZNF165;;chr11:65554528..65554546,+!p1@OVOL1!0.60!2.97!OVOL1;;chr22:41777927..41777971,+!p1@TEF!0.59!29.40!TEF;;chr3:71630690..71630750,-!p11@FOXP1!0.59!5.35!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.45!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.59!4.16!EPAS1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!39.50!SMARCA1;;chr19:12146483..12146546,-!p1@ZNF433!0.58!12.18!ZNF433;;chr9:99180597..99180614,-!p3@ZNF367!0.58!3.27!ZNF367;;chr19:926001..926046,+!p1@ARID3A!0.57!11.28!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.57!3.86!EPAS1;;chr6:35465058..35465077,-!p2@TEAD3!0.57!2.97!TEAD3;;chr6:35464817..35464894,-!p1@TEAD3!0.56!50.48!TEAD3;;chr5:178322893..178322931,+!p1@ZFP2!0.56!4.16!ZFP2;;chr7:15726296..15726315,-!p1@MEOX2!0.56!2.67!MEOX2;;chr7:50343634..50343717,+!p2@IKZF1!0.56!2.67!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.56!2.67!SPI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.56!2.67!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.67!DACH1;;chr19:22966925..22966958,-!p1@ZNF99!0.56!2.67!ZNF99;;chr2:114036488..114036504,-!p1@PAX8!0.56!2.67!PAX8;;chr1:244214577..244214593,+!p1@ZNF238!0.56!2.67!ZNF238;;chr3:128206762..128206781,-!p2@GATA2!0.55!19.90!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.55!17.52!ARID5B;;chr13:74708504..74708549,-!p1@KLF12!0.55!14.25!KLF12;;chr6:108881012..108881034,+!p3@FOXO3!0.55!10.99!FOXO3;;chr17:38465441..38465481,+!p6@RARA!0.55!3.27!RARA;;chr6:168227552..168227609,+!p1@MLLT4!0.54!25.24!MLLT4;;chr19:58220517..58220583,-!p1@ZNF154!0.54!9.50!ZNF154;;chr20:45142154..45142227,-!p1@ZNF334!0.54!5.64!ZNF334;;chr3:170075103..170075114,+!p5@SKIL!0.54!3.56!SKIL;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.97!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.73!PPP1R13L;;chr9:137217986..137218049,+!p3@RXRA!0.53!8.32!RXRA;;chr18:42260059..42260132,+!p1@SETBP1!0.53!4.45!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.53!2.38!ZNF568;;chr1:209979411..209979433,-!p2@IRF6!0.53!2.38!IRF6;;chr5:138643069..138643082,+!p13@MATR3!0.53!2.38!MATR3;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.38!HOXA2;;chr7:31380292..31380351,-!p1@NEUROD6!0.53!2.38!NEUROD6;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.38!EBF3;;chr10:8097357..8097368,+!p15@GATA3!0.53!2.38!GATA3;;chr11:85393886..85393913,-!p3@CREBZF!0.53!2.38!CREBZF;;chrX:56258885..56258896,+!p5@KLF8!0.53!2.38!KLF8;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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.ctss.bed.gz
|id=FF:12236-129G4
|is_a=EFO:0002091;;FF:0000010
|is_obsolete=
|library_id=CNhs12503
|library_id_phase_based=2:CNhs12503
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12236
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12236
|name=amniotic membrane cells, donor2
|namespace=
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|profile_hcage=CNhs12503,LSID918,release012,COMPLETED
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|rna_box=129
|rna_catalog_number=
|rna_concentration=0.18036
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.89
|rna_od260/280=2.01
|rna_position=G4
|rna_rin=
|rna_sample_type=
|rna_tube_id=129G4
|rna_weight_ug=4.86972
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=A 7/14
|sample_cell_type=unclassifiable
|sample_collaboration=Hiroo Toyoda (Tokyo University of Pharm and life sciences)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.15748936672399e-246!GO:0043226;organelle;2.33704211293734e-200!GO:0043229;intracellular organelle;8.09079265402862e-200!GO:0043231;intracellular membrane-bound organelle;1.78393754133814e-194!GO:0043227;membrane-bound organelle;1.78393754133814e-194!GO:0005737;cytoplasm;1.39737460883111e-179!GO:0044422;organelle part;3.42464327406296e-137!GO:0044446;intracellular organelle part;3.2983713857889e-135!GO:0044444;cytoplasmic part;2.34334388179253e-121!GO:0032991;macromolecular complex;1.80610004848459e-99!GO:0005515;protein binding;5.30803047351445e-90!GO:0043170;macromolecule metabolic process;1.16123953636755e-85!GO:0005634;nucleus;2.5848363440919e-85!GO:0044238;primary metabolic process;7.83128152950548e-81!GO:0044237;cellular metabolic process;4.80230979939949e-79!GO:0030529;ribonucleoprotein complex;5.35090686211496e-75!GO:0044428;nuclear part;4.37972697797159e-65!GO:0003723;RNA binding;4.37972697797159e-65!GO:0043233;organelle lumen;4.57003762740036e-62!GO:0031974;membrane-enclosed lumen;4.57003762740036e-62!GO:0043234;protein complex;3.58971804763069e-54!GO:0043283;biopolymer metabolic process;1.63282304564582e-52!GO:0005739;mitochondrion;1.75052305490106e-52!GO:0016043;cellular component organization and biogenesis;2.22908087197074e-51!GO:0019538;protein metabolic process;1.95086187771076e-50!GO:0033036;macromolecule localization;5.47409224197772e-49!GO:0015031;protein transport;5.29054734721228e-48!GO:0045184;establishment of protein localization;4.52636260074597e-46!GO:0008104;protein localization;5.95694361064519e-46!GO:0005840;ribosome;9.38616728051905e-46!GO:0006412;translation;3.11786521212518e-45!GO:0044267;cellular protein metabolic process;1.23955720849871e-43!GO:0044260;cellular macromolecule metabolic process;1.2540848351767e-43!GO:0031090;organelle membrane;7.34066442701113e-43!GO:0010467;gene expression;1.84063742208361e-42!GO:0003735;structural constituent of ribosome;1.66912885903714e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.12218368763109e-40!GO:0043228;non-membrane-bound organelle;3.64278272819307e-39!GO:0043232;intracellular non-membrane-bound organelle;3.64278272819307e-39!GO:0006396;RNA processing;2.05950073310269e-38!GO:0031981;nuclear lumen;5.63053320065367e-37!GO:0033279;ribosomal subunit;1.15181500737476e-36!GO:0065003;macromolecular complex assembly;1.39226004238743e-36!GO:0005829;cytosol;7.17074680534387e-36!GO:0016071;mRNA metabolic process;1.41003620677053e-35!GO:0044429;mitochondrial part;2.89773424493855e-35!GO:0022607;cellular component assembly;7.92596323226944e-35!GO:0031967;organelle envelope;3.5323494872829e-34!GO:0031975;envelope;6.91016106385171e-34!GO:0006996;organelle organization and biogenesis;7.64753095657311e-34!GO:0009059;macromolecule biosynthetic process;1.16295208806927e-33!GO:0046907;intracellular transport;1.31283133629924e-33!GO:0008380;RNA splicing;1.97920956613017e-33!GO:0006259;DNA metabolic process;9.18424975311609e-32!GO:0006397;mRNA processing;4.63867537194833e-31!GO:0006886;intracellular protein transport;1.06092939503015e-30!GO:0007049;cell cycle;1.00247087503732e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.12403321627619e-27!GO:0009058;biosynthetic process;3.46586506749666e-26!GO:0003676;nucleic acid binding;6.27224654043274e-26!GO:0044249;cellular biosynthetic process;1.70587351278791e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.40726660077906e-25!GO:0005654;nucleoplasm;2.38442117729793e-24!GO:0051649;establishment of cellular localization;1.23786208064604e-23!GO:0051641;cellular localization;1.36368528277528e-23!GO:0005681;spliceosome;1.92930031102552e-23!GO:0044445;cytosolic part;1.27150795081925e-22!GO:0005740;mitochondrial envelope;2.10345923757034e-22!GO:0019866;organelle inner membrane;2.59066452308536e-22!GO:0022402;cell cycle process;2.60606554524327e-21!GO:0031966;mitochondrial membrane;3.4496652609975e-21!GO:0006119;oxidative phosphorylation;4.5783507167117e-21!GO:0005743;mitochondrial inner membrane;2.88483105041123e-20!GO:0008134;transcription factor binding;6.48301042942578e-20!GO:0015935;small ribosomal subunit;8.59085247226749e-20!GO:0016070;RNA metabolic process;9.13983966255336e-20!GO:0044451;nucleoplasm part;1.18628749978383e-19!GO:0044455;mitochondrial membrane part;9.48676680215498e-19!GO:0000278;mitotic cell cycle;1.16254967153327e-18!GO:0006457;protein folding;1.50827768950668e-18!GO:0022618;protein-RNA complex assembly;3.49712680761768e-18!GO:0005694;chromosome;4.97388677612063e-18!GO:0015934;large ribosomal subunit;6.34788346170359e-18!GO:0048770;pigment granule;7.01305724884041e-18!GO:0042470;melanosome;7.01305724884041e-18!GO:0012505;endomembrane system;8.72081895046049e-18!GO:0006512;ubiquitin cycle;1.07944926984228e-17!GO:0044427;chromosomal part;4.00318287232393e-17!GO:0005746;mitochondrial respiratory chain;7.14285024072991e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.90837995041382e-17!GO:0051276;chromosome organization and biogenesis;1.0376700084026e-16!GO:0005783;endoplasmic reticulum;1.71043297039385e-16!GO:0019941;modification-dependent protein catabolic process;1.79313028921659e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.79313028921659e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.11188529004563e-16!GO:0044257;cellular protein catabolic process;2.2445582268438e-16!GO:0016462;pyrophosphatase activity;2.26827878386559e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.81358412412262e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;3.50961847115069e-16!GO:0006974;response to DNA damage stimulus;4.95766792514574e-16!GO:0044265;cellular macromolecule catabolic process;9.82375706563248e-16!GO:0043412;biopolymer modification;9.82375706563248e-16!GO:0022403;cell cycle phase;1.10745473077373e-15!GO:0005794;Golgi apparatus;1.16117988418759e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16117988418759e-15!GO:0043285;biopolymer catabolic process;1.16117988418759e-15!GO:0016874;ligase activity;1.24078098177564e-15!GO:0031980;mitochondrial lumen;1.94235863319376e-15!GO:0005759;mitochondrial matrix;1.94235863319376e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.24416823214439e-15!GO:0017111;nucleoside-triphosphatase activity;2.92028929007624e-15!GO:0000166;nucleotide binding;4.42637864716136e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.55161716585215e-15!GO:0006605;protein targeting;6.72164063859174e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.81638855321326e-15!GO:0003954;NADH dehydrogenase activity;6.81638855321326e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.81638855321326e-15!GO:0016192;vesicle-mediated transport;8.3719770768748e-15!GO:0006464;protein modification process;1.02753119244119e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22068047520378e-14!GO:0030163;protein catabolic process;1.64159181944099e-14!GO:0006323;DNA packaging;6.0928519767561e-14!GO:0008135;translation factor activity, nucleic acid binding;1.06402205672331e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.95770836011884e-13!GO:0048193;Golgi vesicle transport;1.95770836011884e-13!GO:0009057;macromolecule catabolic process;2.27533706093563e-13!GO:0006281;DNA repair;2.82970618287076e-13!GO:0050794;regulation of cellular process;3.79264481315242e-13!GO:0043687;post-translational protein modification;4.9187499571956e-13!GO:0007067;mitosis;4.92719825564792e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.21895294917478e-13!GO:0042773;ATP synthesis coupled electron transport;5.21895294917478e-13!GO:0000087;M phase of mitotic cell cycle;5.77940753304707e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.71115980193263e-13!GO:0045271;respiratory chain complex I;6.71115980193263e-13!GO:0005747;mitochondrial respiratory chain complex I;6.71115980193263e-13!GO:0005761;mitochondrial ribosome;7.18257206201775e-13!GO:0000313;organellar ribosome;7.18257206201775e-13!GO:0051301;cell division;7.18257206201775e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.77519985014736e-13!GO:0051082;unfolded protein binding;8.00586246377408e-13!GO:0044432;endoplasmic reticulum part;8.06356939476127e-13!GO:0012501;programmed cell death;9.06905357674685e-13!GO:0005730;nucleolus;1.09099251194796e-12!GO:0006915;apoptosis;1.18314841080684e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.18499209452753e-12!GO:0006333;chromatin assembly or disassembly;2.77067976849622e-12!GO:0005635;nuclear envelope;3.55588868710029e-12!GO:0003712;transcription cofactor activity;3.77653867658983e-12!GO:0000074;regulation of progression through cell cycle;4.0818397556125e-12!GO:0006260;DNA replication;4.33796660596162e-12!GO:0008219;cell death;5.14195610231182e-12!GO:0016265;death;5.14195610231182e-12!GO:0051726;regulation of cell cycle;5.14233559751247e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;6.91253237611574e-12!GO:0000375;RNA splicing, via transesterification reactions;6.91253237611574e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.91253237611574e-12!GO:0009719;response to endogenous stimulus;8.96372452659866e-12!GO:0006366;transcription from RNA polymerase II promoter;9.16772433411881e-12!GO:0006413;translational initiation;1.37262155611586e-11!GO:0003743;translation initiation factor activity;2.25421853193991e-11!GO:0000279;M phase;2.29945418226466e-11!GO:0000785;chromatin;2.67978950961131e-11!GO:0006913;nucleocytoplasmic transport;2.96512434504989e-11!GO:0031965;nuclear membrane;3.84372645857834e-11!GO:0016604;nuclear body;4.37144443823727e-11!GO:0006461;protein complex assembly;5.50024189648222e-11!GO:0008639;small protein conjugating enzyme activity;5.77409671989357e-11!GO:0065004;protein-DNA complex assembly;6.28380303460931e-11!GO:0051169;nuclear transport;6.28965335376469e-11!GO:0044248;cellular catabolic process;6.53945571568896e-11!GO:0019787;small conjugating protein ligase activity;7.19847624342155e-11!GO:0032553;ribonucleotide binding;7.7411743901514e-11!GO:0032555;purine ribonucleotide binding;7.7411743901514e-11!GO:0004842;ubiquitin-protein ligase activity;1.20319032044515e-10!GO:0006446;regulation of translational initiation;1.49915199776707e-10!GO:0005793;ER-Golgi intermediate compartment;1.83539290038519e-10!GO:0008565;protein transporter activity;1.99012986100066e-10!GO:0048523;negative regulation of cellular process;2.83832858862102e-10!GO:0051186;cofactor metabolic process;4.66058194385155e-10!GO:0006334;nucleosome assembly;6.12578598657215e-10!GO:0005773;vacuole;7.06130760124057e-10!GO:0050789;regulation of biological process;9.84231091478829e-10!GO:0044453;nuclear membrane part;1.27462862789685e-09!GO:0005524;ATP binding;1.55285740829856e-09!GO:0017076;purine nucleotide binding;1.71065063629236e-09!GO:0016607;nuclear speck;2.04784074000024e-09!GO:0031497;chromatin assembly;2.08837891929174e-09!GO:0051246;regulation of protein metabolic process;3.9156296885402e-09!GO:0005768;endosome;4.57727184976677e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69313838995513e-09!GO:0032559;adenyl ribonucleotide binding;4.75273823593422e-09!GO:0016881;acid-amino acid ligase activity;5.02390471539451e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.18662438821602e-09!GO:0017038;protein import;6.96848577928321e-09!GO:0000323;lytic vacuole;7.9415328546351e-09!GO:0005764;lysosome;7.9415328546351e-09!GO:0030120;vesicle coat;1.47999410963842e-08!GO:0030662;coated vesicle membrane;1.47999410963842e-08!GO:0048519;negative regulation of biological process;1.53569218561996e-08!GO:0048475;coated membrane;1.7272925364075e-08!GO:0030117;membrane coat;1.7272925364075e-08!GO:0042254;ribosome biogenesis and assembly;2.30846924066871e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.64025382344443e-08!GO:0042623;ATPase activity, coupled;2.64025382344443e-08!GO:0005788;endoplasmic reticulum lumen;2.64686452870272e-08!GO:0016887;ATPase activity;3.25269048942679e-08!GO:0009060;aerobic respiration;3.53758848455187e-08!GO:0004386;helicase activity;3.64825170645356e-08!GO:0019222;regulation of metabolic process;3.96740010772661e-08!GO:0031324;negative regulation of cellular metabolic process;4.11074054975841e-08!GO:0005643;nuclear pore;4.3340461173698e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.7378557326451e-08!GO:0003697;single-stranded DNA binding;6.50826558997159e-08!GO:0006793;phosphorus metabolic process;7.54488918570238e-08!GO:0006796;phosphate metabolic process;7.54488918570238e-08!GO:0045333;cellular respiration;8.63139585688416e-08!GO:0005789;endoplasmic reticulum membrane;1.02605578709432e-07!GO:0043566;structure-specific DNA binding;1.02973076513011e-07!GO:0009055;electron carrier activity;1.07233740740017e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.19721747654929e-07!GO:0030554;adenyl nucleotide binding;1.24506485428126e-07!GO:0009892;negative regulation of metabolic process;1.30096836677121e-07!GO:0019829;cation-transporting ATPase activity;1.30965098105631e-07!GO:0032446;protein modification by small protein conjugation;1.45994225135401e-07!GO:0009259;ribonucleotide metabolic process;1.68085382719198e-07!GO:0015986;ATP synthesis coupled proton transport;1.69271635118388e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.69271635118388e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.86186001443938e-07!GO:0006732;coenzyme metabolic process;1.93790528695053e-07!GO:0016568;chromatin modification;1.98527876380066e-07!GO:0043623;cellular protein complex assembly;2.46285897237329e-07!GO:0016567;protein ubiquitination;2.68078258938487e-07!GO:0050657;nucleic acid transport;2.88181493460138e-07!GO:0051236;establishment of RNA localization;2.88181493460138e-07!GO:0050658;RNA transport;2.88181493460138e-07!GO:0051325;interphase;3.459273858795e-07!GO:0065002;intracellular protein transport across a membrane;3.82825089642572e-07!GO:0003713;transcription coactivator activity;4.91043922077083e-07!GO:0006403;RNA localization;5.2753808646943e-07!GO:0051329;interphase of mitotic cell cycle;5.29757449390503e-07!GO:0009260;ribonucleotide biosynthetic process;5.66719489154152e-07!GO:0016564;transcription repressor activity;5.91870676600994e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.03716621225331e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.46475660571361e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.78111950295629e-07!GO:0006163;purine nucleotide metabolic process;7.05074555254341e-07!GO:0016310;phosphorylation;7.97307700097354e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.9955656986824e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.08633472423249e-07!GO:0009150;purine ribonucleotide metabolic process;8.0981167331381e-07!GO:0051170;nuclear import;9.0511986987114e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.47603241557804e-07!GO:0006164;purine nucleotide biosynthetic process;1.03558246487937e-06!GO:0031988;membrane-bound vesicle;1.10438789695574e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.12473472580193e-06!GO:0042981;regulation of apoptosis;1.13670008591945e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.34630093860287e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.34630093860287e-06!GO:0006099;tricarboxylic acid cycle;1.34630093860287e-06!GO:0046356;acetyl-CoA catabolic process;1.34630093860287e-06!GO:0008026;ATP-dependent helicase activity;1.45067196546782e-06!GO:0015630;microtubule cytoskeleton;1.51754053311804e-06!GO:0043067;regulation of programmed cell death;1.67395026149969e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.68344160818009e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.68344160818009e-06!GO:0006606;protein import into nucleus;1.74685471037901e-06!GO:0016481;negative regulation of transcription;1.86598620365705e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.87444738116508e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.88357241114907e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.89689847602979e-06!GO:0000151;ubiquitin ligase complex;1.94629405470832e-06!GO:0046930;pore complex;2.17334833673784e-06!GO:0045786;negative regulation of progression through cell cycle;2.17843147622086e-06!GO:0009141;nucleoside triphosphate metabolic process;2.498511855151e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.64126766254816e-06!GO:0009056;catabolic process;2.75601465619949e-06!GO:0007005;mitochondrion organization and biogenesis;2.84321845994898e-06!GO:0031982;vesicle;3.21637867962173e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.35820510211466e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.35820510211466e-06!GO:0006754;ATP biosynthetic process;3.84526165548147e-06!GO:0006753;nucleoside phosphate metabolic process;3.84526165548147e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.94618486453473e-06!GO:0000786;nucleosome;3.97468918952991e-06!GO:0003924;GTPase activity;3.97468918952991e-06!GO:0044431;Golgi apparatus part;4.22659809035868e-06!GO:0000245;spliceosome assembly;4.22737124368065e-06!GO:0006084;acetyl-CoA metabolic process;4.63942178155827e-06!GO:0031252;leading edge;6.37614380621988e-06!GO:0005798;Golgi-associated vesicle;6.59195784170603e-06!GO:0004298;threonine endopeptidase activity;6.68236168333205e-06!GO:0043069;negative regulation of programmed cell death;7.00686177611854e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.15040618901201e-06!GO:0006916;anti-apoptosis;7.20203636456846e-06!GO:0043066;negative regulation of apoptosis;8.00740284364637e-06!GO:0031410;cytoplasmic vesicle;8.03293056612825e-06!GO:0003714;transcription corepressor activity;8.38753999011385e-06!GO:0045259;proton-transporting ATP synthase complex;8.3965307444171e-06!GO:0042802;identical protein binding;9.0075453765807e-06!GO:0005770;late endosome;9.57477234478657e-06!GO:0005819;spindle;1.02580333282803e-05!GO:0006613;cotranslational protein targeting to membrane;1.02652592977914e-05!GO:0046034;ATP metabolic process;1.07094976754537e-05!GO:0051028;mRNA transport;1.20164349405545e-05!GO:0048522;positive regulation of cellular process;1.26322857996734e-05!GO:0016563;transcription activator activity;1.30773740201082e-05!GO:0006399;tRNA metabolic process;1.33541527755969e-05!GO:0016859;cis-trans isomerase activity;1.35575167044196e-05!GO:0019899;enzyme binding;1.35867212565394e-05!GO:0031323;regulation of cellular metabolic process;1.38206156963665e-05!GO:0006364;rRNA processing;1.3826770867872e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.40293607632985e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.5548638723962e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.59270972328058e-05!GO:0000775;chromosome, pericentric region;1.61054735315783e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.80615277862946e-05!GO:0016072;rRNA metabolic process;2.13178583920854e-05!GO:0008092;cytoskeletal protein binding;2.32258896886887e-05!GO:0044440;endosomal part;2.32258896886887e-05!GO:0010008;endosome membrane;2.32258896886887e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.47593075025925e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.47593075025925e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.47593075025925e-05!GO:0051427;hormone receptor binding;2.80942705313234e-05!GO:0005667;transcription factor complex;2.81815428325659e-05!GO:0007243;protein kinase cascade;2.84112475367243e-05!GO:0009109;coenzyme catabolic process;2.87534656821152e-05!GO:0005813;centrosome;3.20594221554403e-05!GO:0065007;biological regulation;3.54748013360523e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.68672653233552e-05!GO:0043038;amino acid activation;3.95793122228682e-05!GO:0006418;tRNA aminoacylation for protein translation;3.95793122228682e-05!GO:0043039;tRNA aminoacylation;3.95793122228682e-05!GO:0051188;cofactor biosynthetic process;4.07512779275622e-05!GO:0006261;DNA-dependent DNA replication;4.4125807805814e-05!GO:0008654;phospholipid biosynthetic process;4.42340551069476e-05!GO:0007264;small GTPase mediated signal transduction;4.96253449640275e-05!GO:0030029;actin filament-based process;5.0498120816568e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.38465111572027e-05!GO:0035257;nuclear hormone receptor binding;5.70313497079369e-05!GO:0051187;cofactor catabolic process;6.4985873803885e-05!GO:0016853;isomerase activity;6.65731475139191e-05!GO:0019843;rRNA binding;6.95520287288428e-05!GO:0007051;spindle organization and biogenesis;7.35261550389003e-05!GO:0005815;microtubule organizing center;8.07064331596582e-05!GO:0030118;clathrin coat;8.58469752204101e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000100940996334022!GO:0000315;organellar large ribosomal subunit;0.000100940996334022!GO:0003724;RNA helicase activity;0.000118502489285656!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000122577016492996!GO:0005657;replication fork;0.00013457206783772!GO:0051789;response to protein stimulus;0.00013457206783772!GO:0006986;response to unfolded protein;0.00013457206783772!GO:0008094;DNA-dependent ATPase activity;0.000140241545213837!GO:0003690;double-stranded DNA binding;0.000147182938627888!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000150259465454502!GO:0030133;transport vesicle;0.00015042795937141!GO:0009117;nucleotide metabolic process;0.000162189026055828!GO:0043021;ribonucleoprotein binding;0.000168008363861124!GO:0065009;regulation of a molecular function;0.000171327274290704!GO:0005769;early endosome;0.000174375627084977!GO:0007010;cytoskeleton organization and biogenesis;0.000176723283634968!GO:0048471;perinuclear region of cytoplasm;0.000183163840180705!GO:0000139;Golgi membrane;0.000195051149287913!GO:0003729;mRNA binding;0.000204518409263642!GO:0006350;transcription;0.00021070020034026!GO:0000314;organellar small ribosomal subunit;0.000215025967495846!GO:0005763;mitochondrial small ribosomal subunit;0.000215025967495846!GO:0010468;regulation of gene expression;0.000225055457615944!GO:0045892;negative regulation of transcription, DNA-dependent;0.000237780615504487!GO:0006752;group transfer coenzyme metabolic process;0.000241316936304454!GO:0008250;oligosaccharyl transferase complex;0.000244448884252095!GO:0016740;transferase activity;0.000259639031578602!GO:0005525;GTP binding;0.000293564533540932!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000293727210725175!GO:0016044;membrane organization and biogenesis;0.000299717646534885!GO:0006612;protein targeting to membrane;0.000302887393182109!GO:0051168;nuclear export;0.000310532401806765!GO:0046489;phosphoinositide biosynthetic process;0.00031114208494091!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000344221815045909!GO:0008361;regulation of cell size;0.000361169704019333!GO:0030867;rough endoplasmic reticulum membrane;0.000363899859360559!GO:0016787;hydrolase activity;0.000401153523933311!GO:0004576;oligosaccharyl transferase activity;0.000421533710374505!GO:0000776;kinetochore;0.000447266521939666!GO:0030119;AP-type membrane coat adaptor complex;0.000452107241927949!GO:0015980;energy derivation by oxidation of organic compounds;0.00046758670450404!GO:0005048;signal sequence binding;0.000473819466877614!GO:0051252;regulation of RNA metabolic process;0.000484624552373984!GO:0001558;regulation of cell growth;0.000492649096046923!GO:0016779;nucleotidyltransferase activity;0.000497059819640494!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000513382428732739!GO:0045454;cell redox homeostasis;0.000520437620318661!GO:0045893;positive regulation of transcription, DNA-dependent;0.000523948518496158!GO:0046474;glycerophospholipid biosynthetic process;0.000577233879408653!GO:0016049;cell growth;0.000673709247788983!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000676523873369153!GO:0030131;clathrin adaptor complex;0.000693355087606881!GO:0048518;positive regulation of biological process;0.000701170563686031!GO:0051920;peroxiredoxin activity;0.000720912323561783!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000727514718709899!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000730213057819601!GO:0030663;COPI coated vesicle membrane;0.000784421909592535!GO:0030126;COPI vesicle coat;0.000784421909592535!GO:0005885;Arp2/3 protein complex;0.00081305644139192!GO:0009967;positive regulation of signal transduction;0.000820955991164174!GO:0030057;desmosome;0.000836710294314991!GO:0030659;cytoplasmic vesicle membrane;0.000881345694342716!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000914727678890457!GO:0000082;G1/S transition of mitotic cell cycle;0.00100574293672211!GO:0018196;peptidyl-asparagine modification;0.00108262858402711!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00108262858402711!GO:0009108;coenzyme biosynthetic process;0.00108262858402711!GO:0030658;transport vesicle membrane;0.00110736610051944!GO:0048468;cell development;0.0011158035156609!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130171785818906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130171785818906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130171785818906!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00130970661981396!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00131548200576313!GO:0007265;Ras protein signal transduction;0.00133015661507158!GO:0030384;phosphoinositide metabolic process;0.00133273213452496!GO:0003684;damaged DNA binding;0.00133273213452496!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00138187843051604!GO:0001726;ruffle;0.00138466202595041!GO:0005905;coated pit;0.00150840904338403!GO:0008186;RNA-dependent ATPase activity;0.00154722697319168!GO:0044433;cytoplasmic vesicle part;0.00163735443128634!GO:0030132;clathrin coat of coated pit;0.00163735443128634!GO:0008022;protein C-terminus binding;0.00164070010148519!GO:0048500;signal recognition particle;0.00166926291518939!GO:0006891;intra-Golgi vesicle-mediated transport;0.00170365727487062!GO:0012506;vesicle membrane;0.0017600288149!GO:0005774;vacuolar membrane;0.00177278757303655!GO:0005586;collagen type III;0.00178040942536365!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00179518112861239!GO:0048487;beta-tubulin binding;0.00179518112861239!GO:0030176;integral to endoplasmic reticulum membrane;0.00182322152858749!GO:0006417;regulation of translation;0.00198663197947723!GO:0000075;cell cycle checkpoint;0.00207062079658341!GO:0032561;guanyl ribonucleotide binding;0.00207062079658341!GO:0019001;guanyl nucleotide binding;0.00207062079658341!GO:0006650;glycerophospholipid metabolic process;0.00210332310368157!GO:0016363;nuclear matrix;0.00211771921111904!GO:0043681;protein import into mitochondrion;0.0022959082190726!GO:0000059;protein import into nucleus, docking;0.00231747033196833!GO:0051128;regulation of cellular component organization and biogenesis;0.00232724894092682!GO:0007050;cell cycle arrest;0.00232938372389711!GO:0007242;intracellular signaling cascade;0.00255333864251691!GO:0006302;double-strand break repair;0.00258470305954708!GO:0003682;chromatin binding;0.0026291730360555!GO:0045941;positive regulation of transcription;0.0026291730360555!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00264874978332204!GO:0030137;COPI-coated vesicle;0.00265681503768074!GO:0030521;androgen receptor signaling pathway;0.00271732863673904!GO:0016197;endosome transport;0.0028730307629431!GO:0007088;regulation of mitosis;0.00287626139036055!GO:0046983;protein dimerization activity;0.00288148726168255!GO:0043488;regulation of mRNA stability;0.00290049940602353!GO:0043487;regulation of RNA stability;0.00290049940602353!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00301962751699087!GO:0032774;RNA biosynthetic process;0.00310861533566716!GO:0030660;Golgi-associated vesicle membrane;0.00314970438076817!GO:0006506;GPI anchor biosynthetic process;0.00317733176436569!GO:0030125;clathrin vesicle coat;0.00322576153880322!GO:0030665;clathrin coated vesicle membrane;0.00322576153880322!GO:0003899;DNA-directed RNA polymerase activity;0.00327836404424661!GO:0006351;transcription, DNA-dependent;0.00329058482407756!GO:0006402;mRNA catabolic process;0.00345522043251642!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00358329702031776!GO:0031072;heat shock protein binding;0.00379156869554991!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00379156869554991!GO:0045047;protein targeting to ER;0.00379156869554991!GO:0007052;mitotic spindle organization and biogenesis;0.00385225161457283!GO:0004674;protein serine/threonine kinase activity;0.00393992821202961!GO:0015631;tubulin binding;0.00401275136001053!GO:0004004;ATP-dependent RNA helicase activity;0.00406475971959054!GO:0006401;RNA catabolic process;0.00407056879790921!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00411784315475818!GO:0035258;steroid hormone receptor binding;0.00447332624359303!GO:0007040;lysosome organization and biogenesis;0.00467516359974996!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00476958109189817!GO:0007059;chromosome segregation;0.00498191450962746!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00503009143751895!GO:0006505;GPI anchor metabolic process;0.0050665734265789!GO:0040008;regulation of growth;0.0050665734265789!GO:0005684;U2-dependent spliceosome;0.00513247617728493!GO:0031543;peptidyl-proline dioxygenase activity;0.00515463542898076!GO:0003711;transcription elongation regulator activity;0.00530572878820212!GO:0050790;regulation of catalytic activity;0.00548316249857175!GO:0008312;7S RNA binding;0.00557529360486533!GO:0045045;secretory pathway;0.00561150239337233!GO:0005083;small GTPase regulator activity;0.00581467543079012!GO:0044437;vacuolar part;0.00581467543079012!GO:0006611;protein export from nucleus;0.0059143332858755!GO:0051338;regulation of transferase activity;0.00598883352921433!GO:0050811;GABA receptor binding;0.00636607402424915!GO:0051087;chaperone binding;0.00660672572355017!GO:0008139;nuclear localization sequence binding;0.00681568461448387!GO:0005637;nuclear inner membrane;0.00709018358111325!GO:0005869;dynactin complex;0.00710011619880605!GO:0005791;rough endoplasmic reticulum;0.00713424836202702!GO:0006497;protein amino acid lipidation;0.00739652961707719!GO:0019867;outer membrane;0.00750634309573101!GO:0006626;protein targeting to mitochondrion;0.00750862916104386!GO:0030518;steroid hormone receptor signaling pathway;0.00755100871553868!GO:0031968;organelle outer membrane;0.00779526785721995!GO:0030041;actin filament polymerization;0.00781747767815336!GO:0005765;lysosomal membrane;0.00793316177651172!GO:0006818;hydrogen transport;0.00814383204883983!GO:0008180;signalosome;0.00818112258892486!GO:0045449;regulation of transcription;0.00821081708335665!GO:0006509;membrane protein ectodomain proteolysis;0.00828684832668182!GO:0033619;membrane protein proteolysis;0.00828684832668182!GO:0048144;fibroblast proliferation;0.00828684832668182!GO:0048145;regulation of fibroblast proliferation;0.00828684832668182!GO:0032508;DNA duplex unwinding;0.00834585945444144!GO:0032392;DNA geometric change;0.00834585945444144!GO:0051052;regulation of DNA metabolic process;0.00864932130536751!GO:0048146;positive regulation of fibroblast proliferation;0.00866795395455847!GO:0005741;mitochondrial outer membrane;0.00876377490713079!GO:0046822;regulation of nucleocytoplasmic transport;0.00928072776548811!GO:0019798;procollagen-proline dioxygenase activity;0.00933878119274026!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00994033244325019!GO:0006950;response to stress;0.0100301694154678!GO:0015992;proton transport;0.0102421716844302!GO:0030522;intracellular receptor-mediated signaling pathway;0.0103118064280523!GO:0006414;translational elongation;0.0104923644502018!GO:0043022;ribosome binding;0.0104923644502018!GO:0031902;late endosome membrane;0.010839717578362!GO:0008287;protein serine/threonine phosphatase complex;0.0108905395030613!GO:0006268;DNA unwinding during replication;0.010984879695711!GO:0007033;vacuole organization and biogenesis;0.0110062277383728!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0110412840084464!GO:0015002;heme-copper terminal oxidase activity;0.0110412840084464!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0110412840084464!GO:0004129;cytochrome-c oxidase activity;0.0110412840084464!GO:0006383;transcription from RNA polymerase III promoter;0.0112727248514793!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0112727248514793!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0112727248514793!GO:0043549;regulation of kinase activity;0.0113086835242066!GO:0031326;regulation of cellular biosynthetic process;0.0113086835242066!GO:0051235;maintenance of localization;0.0116273610103211!GO:0030134;ER to Golgi transport vesicle;0.0116889438208655!GO:0016251;general RNA polymerase II transcription factor activity;0.0116910612122428!GO:0032940;secretion by cell;0.0118309398301753!GO:0031529;ruffle organization and biogenesis;0.0120356646612996!GO:0006354;RNA elongation;0.0122617388986807!GO:0045185;maintenance of protein localization;0.0124521790952173!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0126301699783483!GO:0030127;COPII vesicle coat;0.0128070912681741!GO:0012507;ER to Golgi transport vesicle membrane;0.0128070912681741!GO:0017166;vinculin binding;0.0138723922077922!GO:0003678;DNA helicase activity;0.0140757849526956!GO:0016272;prefoldin complex;0.0140757849526956!GO:0032507;maintenance of cellular protein localization;0.0140757849526956!GO:0005856;cytoskeleton;0.0144445399355009!GO:0000086;G2/M transition of mitotic cell cycle;0.0150617380213944!GO:0050681;androgen receptor binding;0.0152164314981505!GO:0051098;regulation of binding;0.0159943350732059!GO:0008154;actin polymerization and/or depolymerization;0.0162468528958935!GO:0006839;mitochondrial transport;0.0163851882541928!GO:0008234;cysteine-type peptidase activity;0.0166257674648423!GO:0030833;regulation of actin filament polymerization;0.0167214974018731!GO:0009889;regulation of biosynthetic process;0.0167368951289525!GO:0008632;apoptotic program;0.0168706595776799!GO:0008601;protein phosphatase type 2A regulator activity;0.01753639288674!GO:0007006;mitochondrial membrane organization and biogenesis;0.0177440824435666!GO:0003746;translation elongation factor activity;0.0177587181385682!GO:0046467;membrane lipid biosynthetic process;0.0181786021389173!GO:0016584;nucleosome positioning;0.0186077594282779!GO:0006338;chromatin remodeling;0.0189225334510446!GO:0009165;nucleotide biosynthetic process;0.0189564154021235!GO:0006405;RNA export from nucleus;0.0192235294791377!GO:0031625;ubiquitin protein ligase binding;0.0195084117976847!GO:0007093;mitotic cell cycle checkpoint;0.0196227308986284!GO:0003923;GPI-anchor transamidase activity;0.0199263996801694!GO:0016255;attachment of GPI anchor to protein;0.0199263996801694!GO:0042765;GPI-anchor transamidase complex;0.0199263996801694!GO:0006284;base-excision repair;0.0202990860316896!GO:0045334;clathrin-coated endocytic vesicle;0.0203097894357261!GO:0005938;cell cortex;0.0203209207641163!GO:0022890;inorganic cation transmembrane transporter activity;0.0205338249504305!GO:0004527;exonuclease activity;0.0211387071739284!GO:0006487;protein amino acid N-linked glycosylation;0.0214752943406984!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0219471141019718!GO:0005832;chaperonin-containing T-complex;0.0219947896441991!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0219947896441991!GO:0010257;NADH dehydrogenase complex assembly;0.0219947896441991!GO:0033108;mitochondrial respiratory chain complex assembly;0.0219947896441991!GO:0051101;regulation of DNA binding;0.0221600984735163!GO:0019904;protein domain specific binding;0.0221666665554136!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0221862092192024!GO:0009116;nucleoside metabolic process;0.0221862092192024!GO:0030027;lamellipodium;0.0222270523049471!GO:0042158;lipoprotein biosynthetic process;0.0223631461121736!GO:0003702;RNA polymerase II transcription factor activity;0.0223719113576921!GO:0043596;nuclear replication fork;0.0225118790424807!GO:0035035;histone acetyltransferase binding;0.0227122534110504!GO:0031124;mRNA 3'-end processing;0.0229470058376155!GO:0006897;endocytosis;0.0233416478651307!GO:0010324;membrane invagination;0.0233416478651307!GO:0045859;regulation of protein kinase activity;0.0234560556940886!GO:0000152;nuclear ubiquitin ligase complex;0.0234560556940886!GO:0004177;aminopeptidase activity;0.023698652235175!GO:0006352;transcription initiation;0.0238170061385564!GO:0009966;regulation of signal transduction;0.0239850234312555!GO:0043065;positive regulation of apoptosis;0.0243274271363928!GO:0005874;microtubule;0.0246470859776491!GO:0004518;nuclease activity;0.0249036414060918!GO:0051651;maintenance of cellular localization;0.0250630793595632!GO:0030880;RNA polymerase complex;0.0258172277148471!GO:0006289;nucleotide-excision repair;0.0258949105692378!GO:0003779;actin binding;0.0260310856908161!GO:0006376;mRNA splice site selection;0.0265214846652142!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0265214846652142!GO:0000228;nuclear chromosome;0.0266035848981734!GO:0000159;protein phosphatase type 2A complex;0.0285281196303791!GO:0006310;DNA recombination;0.0286053996900796!GO:0030832;regulation of actin filament length;0.0287461636096586!GO:0005876;spindle microtubule;0.0290085293656453!GO:0043068;positive regulation of programmed cell death;0.0301529595237793!GO:0008064;regulation of actin polymerization and/or depolymerization;0.03041162268094!GO:0030031;cell projection biogenesis;0.0307919926025517!GO:0046966;thyroid hormone receptor binding;0.0309220855174567!GO:0007034;vacuolar transport;0.0310460242178814!GO:0009893;positive regulation of metabolic process;0.0319328621069527!GO:0030149;sphingolipid catabolic process;0.0324825818008733!GO:0008637;apoptotic mitochondrial changes;0.0325652406784678!GO:0032535;regulation of cellular component size;0.0328553419032134!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0340884313288549!GO:0006984;ER-nuclear signaling pathway;0.0341751687748699!GO:0046483;heterocycle metabolic process;0.0341751687748699!GO:0006892;post-Golgi vesicle-mediated transport;0.0341751687748699!GO:0030128;clathrin coat of endocytic vesicle;0.0341751687748699!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0341751687748699!GO:0030122;AP-2 adaptor complex;0.0341751687748699!GO:0031418;L-ascorbic acid binding;0.0349804158689372!GO:0003677;DNA binding;0.0355432772408999!GO:0031371;ubiquitin conjugating enzyme complex;0.0362916649504174!GO:0006355;regulation of transcription, DNA-dependent;0.0363227350327739!GO:0030911;TPR domain binding;0.0402845210885332!GO:0005801;cis-Golgi network;0.0403109990831398!GO:0000209;protein polyubiquitination;0.0403109990831398!GO:0008538;proteasome activator activity;0.0406284062401734!GO:0003756;protein disulfide isomerase activity;0.0415499070730626!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0415499070730626!GO:0040029;regulation of gene expression, epigenetic;0.0421702925041429!GO:0007266;Rho protein signal transduction;0.0433262596601406!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0435212750680638!GO:0033043;regulation of organelle organization and biogenesis;0.0435212750680638!GO:0005680;anaphase-promoting complex;0.0437782024565808!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0441588408727769!GO:0000049;tRNA binding;0.0442851088884207!GO:0045936;negative regulation of phosphate metabolic process;0.044423290755107!GO:0030332;cyclin binding;0.0456527624988406!GO:0016301;kinase activity;0.0456771168630402!GO:0001836;release of cytochrome c from mitochondria;0.0456771168630402!GO:0015629;actin cytoskeleton;0.0458175647381903!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0460265421388039!GO:0015399;primary active transmembrane transporter activity;0.0460265421388039!GO:0046982;protein heterodimerization activity;0.0460675048524376!GO:0006270;DNA replication initiation;0.0460675048524376!GO:0006518;peptide metabolic process;0.0461148290024633!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0462342210834922!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0462342210834922!GO:0008047;enzyme activator activity;0.0462696988920789!GO:0005784;translocon complex;0.0462696988920789!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0462696988920789!GO:0005925;focal adhesion;0.0463201740003823!GO:0007346;regulation of progression through mitotic cell cycle;0.0466571048501404!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0476622336514605!GO:0000428;DNA-directed RNA polymerase complex;0.0476622336514605!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0476653692372902!GO:0006779;porphyrin biosynthetic process;0.0481172309106381!GO:0033014;tetrapyrrole biosynthetic process;0.0481172309106381!GO:0051656;establishment of organelle localization;0.0485384216118984!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0486848698748624!GO:0001527;microfibril;0.0488993785578975!GO:0031901;early endosome membrane;0.0493670231712737!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0494014688064149!GO:0051287;NAD binding;0.0494845230229042
|sample_id=12236
|sample_note=Jan 20 librarian
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=amnion
|top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12236-129G4;search_select_hide=table117:FF:12236-129G4
}}
}}

Latest revision as of 18:36, 4 June 2020

Name:amniotic membrane cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12503
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005529
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12503 CAGE DRX008538 DRR009410
Accession ID Hg19

Library idBAMCTSS
CNhs12503 DRZ000835 DRZ002220
Accession ID Hg38

Library idBAMCTSS
CNhs12503 DRZ012185 DRZ013570
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.278
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.297
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.1
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0446
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.269
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0516
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.659
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0992
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.277
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.34
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.2
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.113
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.565
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.202
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.202
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.421
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0836
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.301
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.63
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.113
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0.34
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.312
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12503

Jaspar motifP-value
MA0002.20.0562
MA0003.10.987
MA0004.10.965
MA0006.10.0681
MA0007.10.591
MA0009.10.371
MA0014.10.0419
MA0017.10.0996
MA0018.20.415
MA0019.10.0518
MA0024.19.70052e-7
MA0025.10.975
MA0027.10.863
MA0028.10.307
MA0029.10.671
MA0030.10.756
MA0031.10.839
MA0035.20.468
MA0038.10.0267
MA0039.20.00376
MA0040.10.833
MA0041.10.408
MA0042.10.829
MA0043.10.353
MA0046.10.561
MA0047.20.538
MA0048.10.177
MA0050.18.13848e-4
MA0051.10.0192
MA0052.10.41
MA0055.10.161
MA0057.10.532
MA0058.10.999
MA0059.10.0726
MA0060.13.42858e-5
MA0061.10.015
MA0062.20.764
MA0065.20.195
MA0066.10.684
MA0067.10.09
MA0068.10.0267
MA0069.10.867
MA0070.10.694
MA0071.10.258
MA0072.10.754
MA0073.10.527
MA0074.10.533
MA0076.10.636
MA0077.10.41
MA0078.10.233
MA0079.20.0803
MA0080.21.99845e-4
MA0081.10.095
MA0083.10.0352
MA0084.10.18
MA0087.10.451
MA0088.10.431
MA0090.12.99206e-6
MA0091.10.351
MA0092.10.226
MA0093.10.902
MA0099.20.0686
MA0100.10.643
MA0101.10.149
MA0102.20.668
MA0103.10.00568
MA0104.20.00323
MA0105.10.00304
MA0106.10.23
MA0107.10.0753
MA0108.20.00181
MA0111.10.903
MA0112.20.454
MA0113.10.778
MA0114.10.262
MA0115.10.112
MA0116.10.0182
MA0117.10.298
MA0119.10.0751
MA0122.10.546
MA0124.10.364
MA0125.10.0901
MA0131.10.694
MA0135.10.707
MA0136.10.0219
MA0137.20.0921
MA0138.20.513
MA0139.10.0856
MA0140.10.659
MA0141.10.00447
MA0142.10.492
MA0143.10.457
MA0144.10.665
MA0145.10.913
MA0146.10.0846
MA0147.10.00446
MA0148.10.497
MA0149.10.276
MA0150.10.114
MA0152.10.301
MA0153.10.705
MA0154.10.168
MA0155.10.632
MA0156.10.0808
MA0157.10.904
MA0159.10.269
MA0160.10.336
MA0162.10.473
MA0163.10.0338
MA0164.10.593
MA0258.10.0173
MA0259.10.356



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12503

Novel motifP-value
10.0729
100.51
1000.678
1010.593
1020.978
1030.666
1040.588
1050.282
1060.049
1070.339
1080.379
1090.326
110.26
1100.505
1110.236
1120.423
1130.00476
1140.0618
1150.752
1160.122
1170.521
1180.317
1190.284
120.729
1200.345
1210.365
1220.493
1237.62243e-4
1240.0167
1250.793
1260.883
1270.887
1280.0345
1290.625
130.789
1300.949
1310.00781
1320.906
1330.977
1340.0274
1350.908
1360.00903
1370.291
1380.132
1390.00545
140.81
1400.903
1410.433
1420.103
1430.303
1440.864
1450.735
1460.0175
1470.157
1480.305
1490.98
150.802
1500.789
1510.968
1520.0649
1530.224
1540.223
1550.213
1560.429
1570.249
1580.509
1590.92
160.382
1600.945
1610.675
1620.453
1630.365
1640.943
1650.569
1660.827
1670.547
1680.43
1690.331
170.858
180.188
190.278
20.691
200.236
210.105
220.323
230.32
240.523
250.815
260.241
270.29
280.833
290.117
30.94
300.177
310.837
320.648
330.782
340.611
350.0126
360.0359
370.0384
380.424
390.372
40.852
400.974
410.292
420.789
430.234
440.529
450.176
460.0584
470.115
480.718
490.0623
50.89
500.725
510.771
520.752
530.094
540.941
550.329
560.971
570.617
580.278
590.777
60.808
600.068
610.986
620.224
630.147
640.887
650.257
660.761
670.367
680.21
690.368
70.811
700.136
710.252
720.643
730.264
740.0853
750.624
760.93
770.812
780.198
790.596
80.207
800.414
810.0162
820.052
830.802
840.49
850.118
860.0424
870.626
880.976
890.865
90.809
900.834
910.998
920.251
930.945
940.872
950.491
960.351
970.135
980.202
990.93



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12503


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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