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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004961
|accession_numbers=CAGE;DRX008595;DRR009467;DRZ000892;DRZ002277;DRZ012242;DRZ013627
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|comment=
|comment=
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|creation_date=
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|def=
|
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Line 35: Line 42:
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12739-135I3
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12739-135I3
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg38.nobarcode.ctss.bed.gz
|id=FF:12739-135I3
|id=FF:12739-135I3
|is_a=CL:0000149;;EFO:0002091;;FF:0000210;;FF:0000730
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|library_id=CNhs13156
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12739
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12739
|name=Melanocyte, donor2 (MC+2)
|name=Melanocyte, donor2 (MC+2)
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=,,,
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|profile_hcage=CNhs13156,LSID1002,release013,COMPLETED
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|rna_box=135
|rna_box=135
|rna_catalog_number=
|rna_catalog_number=
Line 55: Line 77:
|rna_sample_type=
|rna_sample_type=
|rna_tube_id=135I3
|rna_tube_id=135I3
|rna_weight_ug=7.00
|rna_weight_ug=7
|sample_age=
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.74626409301947e-251!GO:0005737;cytoplasm;3.5769058564908e-208!GO:0043231;intracellular membrane-bound organelle;7.32732225546594e-208!GO:0043227;membrane-bound organelle;1.67261003945767e-207!GO:0043226;organelle;1.07938376631792e-202!GO:0043229;intracellular organelle;2.31454467837467e-202!GO:0044444;cytoplasmic part;6.01266670226152e-164!GO:0044422;organelle part;7.56697246486202e-160!GO:0044446;intracellular organelle part;1.16719827608279e-158!GO:0032991;macromolecular complex;5.53677238568702e-104!GO:0044237;cellular metabolic process;3.10089929954174e-93!GO:0044238;primary metabolic process;1.32855132338474e-90!GO:0030529;ribonucleoprotein complex;4.79997126023805e-87!GO:0005739;mitochondrion;4.50142184255032e-83!GO:0043170;macromolecule metabolic process;3.23468845216042e-78!GO:0043233;organelle lumen;2.68592741837913e-70!GO:0031974;membrane-enclosed lumen;2.68592741837913e-70!GO:0005634;nucleus;1.84355917380485e-68!GO:0003723;RNA binding;5.17512737017431e-66!GO:0044428;nuclear part;6.46343355641198e-65!GO:0031090;organelle membrane;2.2704612412906e-62!GO:0005840;ribosome;1.98691435121787e-55!GO:0044429;mitochondrial part;8.71846217458397e-55!GO:0005515;protein binding;1.44126507424757e-54!GO:0006412;translation;6.66433802028583e-54!GO:0043234;protein complex;7.73157911087289e-54!GO:0009058;biosynthetic process;1.53696085488349e-51!GO:0015031;protein transport;2.18047438016483e-48!GO:0003735;structural constituent of ribosome;2.5035250664123e-48!GO:0033036;macromolecule localization;3.36053090310395e-48!GO:0031967;organelle envelope;3.14612651879093e-47!GO:0031975;envelope;8.10786969698159e-47!GO:0019538;protein metabolic process;2.2329259575653e-46!GO:0044249;cellular biosynthetic process;1.05154930917032e-45!GO:0006396;RNA processing;1.05154930917032e-45!GO:0009059;macromolecule biosynthetic process;1.9015717146027e-45!GO:0008104;protein localization;4.79410178121835e-45!GO:0016043;cellular component organization and biogenesis;2.34431345645313e-44!GO:0045184;establishment of protein localization;3.5746750932868e-44!GO:0044260;cellular macromolecule metabolic process;1.58936338144374e-42!GO:0033279;ribosomal subunit;2.87497088798615e-42!GO:0044267;cellular protein metabolic process;6.01395864817059e-42!GO:0043283;biopolymer metabolic process;1.10732672250667e-41!GO:0005829;cytosol;5.96709828801691e-39!GO:0031981;nuclear lumen;1.50863736263769e-37!GO:0046907;intracellular transport;2.72383700882408e-37!GO:0005740;mitochondrial envelope;9.04230505307536e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.16923573509633e-35!GO:0006996;organelle organization and biogenesis;6.55370276404126e-35!GO:0048770;pigment granule;5.04561071722256e-34!GO:0042470;melanosome;5.04561071722256e-34!GO:0006259;DNA metabolic process;5.10537306005766e-34!GO:0065003;macromolecular complex assembly;1.88516865847238e-33!GO:0031966;mitochondrial membrane;2.0192481892924e-33!GO:0043228;non-membrane-bound organelle;2.07857470014769e-33!GO:0043232;intracellular non-membrane-bound organelle;2.07857470014769e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.52367146225572e-33!GO:0019866;organelle inner membrane;3.27153583309997e-33!GO:0016071;mRNA metabolic process;3.33612388320591e-33!GO:0010467;gene expression;3.51064521310514e-32!GO:0005743;mitochondrial inner membrane;7.30101767684407e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.35137205551496e-31!GO:0008380;RNA splicing;1.07467394447869e-30!GO:0006886;intracellular protein transport;1.07467394447869e-30!GO:0022607;cellular component assembly;4.78085966193148e-29!GO:0006397;mRNA processing;6.58144590090677e-29!GO:0016462;pyrophosphatase activity;1.37515733197039e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.21128502069234e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;2.78320488892936e-27!GO:0000166;nucleotide binding;4.21978677071646e-27!GO:0044445;cytosolic part;7.09016224387768e-27!GO:0017111;nucleoside-triphosphatase activity;1.00756414591154e-26!GO:0007049;cell cycle;7.17672242123501e-26!GO:0006119;oxidative phosphorylation;1.70868282617671e-25!GO:0012505;endomembrane system;2.2476480229143e-25!GO:0051649;establishment of cellular localization;2.49243746577968e-25!GO:0051641;cellular localization;3.94229429284331e-25!GO:0031980;mitochondrial lumen;3.2097511815371e-23!GO:0005759;mitochondrial matrix;3.2097511815371e-23!GO:0044455;mitochondrial membrane part;4.00011000300246e-23!GO:0005783;endoplasmic reticulum;5.73242561782764e-23!GO:0005681;spliceosome;1.92982741055047e-22!GO:0015935;small ribosomal subunit;4.19402210611561e-22!GO:0032553;ribonucleotide binding;2.3140082312551e-21!GO:0032555;purine ribonucleotide binding;2.3140082312551e-21!GO:0015934;large ribosomal subunit;2.59171400572019e-21!GO:0005654;nucleoplasm;6.38174979380689e-21!GO:0051186;cofactor metabolic process;7.82502320279565e-21!GO:0000278;mitotic cell cycle;8.17182176007191e-21!GO:0017076;purine nucleotide binding;8.72349334022604e-21!GO:0006457;protein folding;3.02752095972945e-20!GO:0003676;nucleic acid binding;3.76802903273512e-20!GO:0022402;cell cycle process;4.85948547026692e-20!GO:0022618;protein-RNA complex assembly;1.91710439510551e-19!GO:0006974;response to DNA damage stimulus;5.61146321633282e-19!GO:0044432;endoplasmic reticulum part;9.00680755523174e-19!GO:0005746;mitochondrial respiratory chain;1.13942436146265e-18!GO:0016874;ligase activity;1.22127975522618e-18!GO:0005694;chromosome;2.71904365159707e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.0418629501712e-18!GO:0005730;nucleolus;7.72396895246477e-18!GO:0005524;ATP binding;9.31599278156824e-18!GO:0044427;chromosomal part;9.60600886000493e-18!GO:0032559;adenyl ribonucleotide binding;3.03501012714648e-17!GO:0000087;M phase of mitotic cell cycle;3.27191861413427e-17!GO:0007067;mitosis;4.31289614056377e-17!GO:0044265;cellular macromolecule catabolic process;4.42927327964514e-17!GO:0006281;DNA repair;8.6766451870611e-17!GO:0050136;NADH dehydrogenase (quinone) activity;8.6766451870611e-17!GO:0003954;NADH dehydrogenase activity;8.6766451870611e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.6766451870611e-17!GO:0022403;cell cycle phase;1.29776692199663e-16!GO:0030554;adenyl nucleotide binding;1.67890190333392e-16!GO:0044248;cellular catabolic process;3.96914944709158e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.34676850162068e-16!GO:0044451;nucleoplasm part;4.37010473235458e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.88467575244574e-16!GO:0006512;ubiquitin cycle;5.87696416080258e-16!GO:0051301;cell division;8.99331108542321e-16!GO:0006732;coenzyme metabolic process;1.15355771099967e-15!GO:0005761;mitochondrial ribosome;1.16563912752388e-15!GO:0000313;organellar ribosome;1.16563912752388e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45815649478601e-15!GO:0043285;biopolymer catabolic process;1.52401089230473e-15!GO:0009057;macromolecule catabolic process;2.18423540413382e-15!GO:0008135;translation factor activity, nucleic acid binding;2.20310241626663e-15!GO:0016887;ATPase activity;2.23479678252868e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.40444311979145e-15!GO:0006605;protein targeting;3.19662878298516e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.48044594499523e-15!GO:0000279;M phase;4.38483692864474e-15!GO:0051082;unfolded protein binding;4.38483692864474e-15!GO:0019941;modification-dependent protein catabolic process;4.41082234834716e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.41082234834716e-15!GO:0042623;ATPase activity, coupled;4.66758543938904e-15!GO:0044257;cellular protein catabolic process;5.42631386230594e-15!GO:0030964;NADH dehydrogenase complex (quinone);7.03618714924026e-15!GO:0045271;respiratory chain complex I;7.03618714924026e-15!GO:0005747;mitochondrial respiratory chain complex I;7.03618714924026e-15!GO:0005794;Golgi apparatus;7.1144234729602e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.1144234729602e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.83455274933101e-15!GO:0042773;ATP synthesis coupled electron transport;7.83455274933101e-15!GO:0051276;chromosome organization and biogenesis;9.95938516380938e-15!GO:0042254;ribosome biogenesis and assembly;1.07903541782959e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.50765744691621e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.21410621568255e-14!GO:0005789;endoplasmic reticulum membrane;1.46268565716126e-13!GO:0006413;translational initiation;2.81499683805512e-13!GO:0030163;protein catabolic process;3.68913528471757e-13!GO:0006399;tRNA metabolic process;1.31724118378589e-12!GO:0009259;ribonucleotide metabolic process;1.45680510086942e-12!GO:0006260;DNA replication;1.65365012090786e-12!GO:0005635;nuclear envelope;1.70325380792944e-12!GO:0006163;purine nucleotide metabolic process;2.57606217931088e-12!GO:0048193;Golgi vesicle transport;4.39632787800733e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.28305825918002e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;5.91966659946149e-12!GO:0003743;translation initiation factor activity;5.93589564010152e-12!GO:0031965;nuclear membrane;6.00985321349137e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;6.00985321349137e-12!GO:0000375;RNA splicing, via transesterification reactions;6.00985321349137e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.00985321349137e-12!GO:0016070;RNA metabolic process;6.42628292193961e-12!GO:0008134;transcription factor binding;6.66502964677811e-12!GO:0043412;biopolymer modification;7.21713846372959e-12!GO:0009150;purine ribonucleotide metabolic process;8.71538570639381e-12!GO:0044453;nuclear membrane part;1.04743520864151e-11!GO:0009719;response to endogenous stimulus;1.47310165546392e-11!GO:0006446;regulation of translational initiation;1.85910311482522e-11!GO:0016787;hydrolase activity;2.14709658622508e-11!GO:0006323;DNA packaging;2.14709658622508e-11!GO:0000785;chromatin;2.16011139919533e-11!GO:0009199;ribonucleoside triphosphate metabolic process;2.23675718273653e-11!GO:0006333;chromatin assembly or disassembly;2.42716195692527e-11!GO:0065004;protein-DNA complex assembly;2.54913131447596e-11!GO:0009141;nucleoside triphosphate metabolic process;2.96038825552467e-11!GO:0006164;purine nucleotide biosynthetic process;3.31454265773992e-11!GO:0051188;cofactor biosynthetic process;3.79903848512132e-11!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.29353409116318e-11!GO:0009144;purine nucleoside triphosphate metabolic process;4.29353409116318e-11!GO:0008565;protein transporter activity;4.51706168333866e-11!GO:0009260;ribonucleotide biosynthetic process;5.1274486570643e-11!GO:0005773;vacuole;8.20925826909636e-11!GO:0006334;nucleosome assembly;8.9338255239534e-11!GO:0009152;purine ribonucleotide biosynthetic process;1.10437608427571e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.18854823360986e-10!GO:0016192;vesicle-mediated transport;1.41090597147222e-10!GO:0051726;regulation of cell cycle;1.46236781998697e-10!GO:0004386;helicase activity;2.02328403575455e-10!GO:0005768;endosome;2.3528817774551e-10!GO:0006464;protein modification process;2.40984142022376e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.41932914502783e-10!GO:0006364;rRNA processing;2.90461714466635e-10!GO:0015630;microtubule cytoskeleton;3.16746007132191e-10!GO:0031497;chromatin assembly;3.30530089008921e-10!GO:0000074;regulation of progression through cell cycle;3.38363906906427e-10!GO:0046034;ATP metabolic process;3.98275157135879e-10!GO:0009056;catabolic process;4.78558091655114e-10!GO:0009142;nucleoside triphosphate biosynthetic process;5.42254427661779e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.42254427661779e-10!GO:0015986;ATP synthesis coupled proton transport;6.1123784041549e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.1123784041549e-10!GO:0016072;rRNA metabolic process;7.68187218260725e-10!GO:0009055;electron carrier activity;8.9892922491588e-10!GO:0008639;small protein conjugating enzyme activity;1.03187046378351e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.04512871996756e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.04512871996756e-09!GO:0016604;nuclear body;1.39869435618435e-09!GO:0009117;nucleotide metabolic process;1.43140771453532e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.55286153989094e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.55286153989094e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.55286153989094e-09!GO:0016469;proton-transporting two-sector ATPase complex;1.76072135632674e-09!GO:0000323;lytic vacuole;1.83607356194336e-09!GO:0005764;lysosome;1.83607356194336e-09!GO:0043038;amino acid activation;2.20287522468685e-09!GO:0006418;tRNA aminoacylation for protein translation;2.20287522468685e-09!GO:0043039;tRNA aminoacylation;2.20287522468685e-09!GO:0004842;ubiquitin-protein ligase activity;2.49228365887226e-09!GO:0019787;small conjugating protein ligase activity;3.0263361451223e-09!GO:0019829;cation-transporting ATPase activity;3.11908716119966e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.14926163055164e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.46462041121094e-09!GO:0006913;nucleocytoplasmic transport;3.76404235445039e-09!GO:0005643;nuclear pore;3.93607733665475e-09!GO:0031988;membrane-bound vesicle;4.41796861597879e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.56644411154699e-09!GO:0008026;ATP-dependent helicase activity;6.08405278537157e-09!GO:0003924;GTPase activity;6.42421832803531e-09!GO:0051169;nuclear transport;7.45611071549154e-09!GO:0006754;ATP biosynthetic process;8.73370707131302e-09!GO:0006753;nucleoside phosphate metabolic process;8.73370707131302e-09!GO:0009108;coenzyme biosynthetic process;9.34404533885962e-09!GO:0065002;intracellular protein transport across a membrane;1.55937815539267e-08!GO:0016740;transferase activity;1.81372306716404e-08!GO:0009060;aerobic respiration;2.06190029227936e-08!GO:0005819;spindle;2.19102734056893e-08!GO:0031982;vesicle;2.32034601654444e-08!GO:0005793;ER-Golgi intermediate compartment;2.46463537938014e-08!GO:0031410;cytoplasmic vesicle;2.81110410001473e-08!GO:0016881;acid-amino acid ligase activity;3.37383085132625e-08!GO:0006461;protein complex assembly;4.29160571250633e-08!GO:0012501;programmed cell death;6.09312622516248e-08!GO:0006915;apoptosis;7.07400715304485e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.52769325077415e-08!GO:0045333;cellular respiration;7.52769325077415e-08!GO:0006752;group transfer coenzyme metabolic process;8.28475412909286e-08!GO:0046930;pore complex;8.6872726104994e-08!GO:0007005;mitochondrion organization and biogenesis;1.0079741346658e-07!GO:0016491;oxidoreductase activity;1.06114815616449e-07!GO:0005770;late endosome;1.08743897462091e-07!GO:0006099;tricarboxylic acid cycle;1.43170362708162e-07!GO:0046356;acetyl-CoA catabolic process;1.43170362708162e-07!GO:0050657;nucleic acid transport;1.54195459490636e-07!GO:0051236;establishment of RNA localization;1.54195459490636e-07!GO:0050658;RNA transport;1.54195459490636e-07!GO:0006403;RNA localization;1.7420704354675e-07!GO:0006084;acetyl-CoA metabolic process;1.77051979893138e-07!GO:0003712;transcription cofactor activity;1.77051979893138e-07!GO:0003697;single-stranded DNA binding;2.0454462312361e-07!GO:0005788;endoplasmic reticulum lumen;2.28861840964344e-07!GO:0016779;nucleotidyltransferase activity;2.35458973198031e-07!GO:0051187;cofactor catabolic process;2.36655650155746e-07!GO:0043687;post-translational protein modification;2.64071140170971e-07!GO:0000786;nucleosome;2.8985117160035e-07!GO:0017038;protein import;3.12249749324794e-07!GO:0008654;phospholipid biosynthetic process;3.15189584927909e-07!GO:0044431;Golgi apparatus part;3.15189584927909e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.92946703415285e-07!GO:0009109;coenzyme catabolic process;4.95554195685287e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.14057096278814e-07!GO:0045259;proton-transporting ATP synthase complex;6.62701261870427e-07!GO:0008219;cell death;6.87484311565077e-07!GO:0016265;death;6.87484311565077e-07!GO:0016607;nuclear speck;9.56316138479279e-07!GO:0016853;isomerase activity;1.04880310603922e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.16854446304185e-06!GO:0044440;endosomal part;1.24236748069531e-06!GO:0010008;endosome membrane;1.24236748069531e-06!GO:0000775;chromosome, pericentric region;1.24459181461883e-06!GO:0006261;DNA-dependent DNA replication;1.25312543201518e-06!GO:0005525;GTP binding;1.37018252884328e-06!GO:0043566;structure-specific DNA binding;1.37545411277482e-06!GO:0032446;protein modification by small protein conjugation;1.40811792737222e-06!GO:0030120;vesicle coat;1.7215698385957e-06!GO:0030662;coated vesicle membrane;1.7215698385957e-06!GO:0016567;protein ubiquitination;1.86169747687171e-06!GO:0005813;centrosome;2.07990596408596e-06!GO:0043623;cellular protein complex assembly;2.31368370820421e-06!GO:0004298;threonine endopeptidase activity;2.52505666879465e-06!GO:0005815;microtubule organizing center;2.61387778772403e-06!GO:0048475;coated membrane;3.06378124231192e-06!GO:0030117;membrane coat;3.06378124231192e-06!GO:0005798;Golgi-associated vesicle;3.06676862789927e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.6262091918187e-06!GO:0015399;primary active transmembrane transporter activity;3.6262091918187e-06!GO:0000245;spliceosome assembly;4.18171134794502e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.25135039927365e-06!GO:0051028;mRNA transport;4.38957360190454e-06!GO:0005762;mitochondrial large ribosomal subunit;6.37783019906325e-06!GO:0000315;organellar large ribosomal subunit;6.37783019906325e-06!GO:0006916;anti-apoptosis;7.01888695263792e-06!GO:0046474;glycerophospholipid biosynthetic process;7.9274762146038e-06!GO:0007051;spindle organization and biogenesis;8.93520622768438e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.03888963920422e-05!GO:0006091;generation of precursor metabolites and energy;1.05716034577814e-05!GO:0006650;glycerophospholipid metabolic process;1.19969474382159e-05!GO:0042440;pigment metabolic process;1.19969474382159e-05!GO:0016568;chromatin modification;1.34572277716596e-05!GO:0051246;regulation of protein metabolic process;1.35208821880574e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.46656311651386e-05!GO:0006613;cotranslational protein targeting to membrane;1.61142307440569e-05!GO:0000139;Golgi membrane;1.68313087208807e-05!GO:0009165;nucleotide biosynthetic process;1.72124445987826e-05!GO:0000151;ubiquitin ligase complex;1.78546391135843e-05!GO:0032561;guanyl ribonucleotide binding;2.02020933239026e-05!GO:0019001;guanyl nucleotide binding;2.02020933239026e-05!GO:0008094;DNA-dependent ATPase activity;2.35288736311546e-05!GO:0042981;regulation of apoptosis;2.45116542101848e-05!GO:0003899;DNA-directed RNA polymerase activity;2.55202029642033e-05!GO:0000075;cell cycle checkpoint;2.66322817475715e-05!GO:0046467;membrane lipid biosynthetic process;2.67926781713553e-05!GO:0019843;rRNA binding;2.68209783417261e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.70539998955502e-05!GO:0006643;membrane lipid metabolic process;2.74536282622851e-05!GO:0003724;RNA helicase activity;2.79128109254311e-05!GO:0046148;pigment biosynthetic process;3.0438799362666e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.29726345974111e-05!GO:0043067;regulation of programmed cell death;3.29726345974111e-05!GO:0006612;protein targeting to membrane;3.63293364676266e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.1798888086285e-05!GO:0051329;interphase of mitotic cell cycle;4.2100925012778e-05!GO:0000314;organellar small ribosomal subunit;4.47001378536375e-05!GO:0005763;mitochondrial small ribosomal subunit;4.47001378536375e-05!GO:0045454;cell redox homeostasis;6.61925695750896e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.73681083685627e-05!GO:0048066;pigmentation during development;6.74372194146731e-05!GO:0006793;phosphorus metabolic process;7.02386232885775e-05!GO:0006796;phosphate metabolic process;7.02386232885775e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;7.45315565208356e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.78860306613269e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.06999017817181e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.06999017817181e-05!GO:0006818;hydrogen transport;8.07106696011053e-05!GO:0005657;replication fork;8.96043477872026e-05!GO:0015992;proton transport;8.98393635566519e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.12782195479222e-05!GO:0006366;transcription from RNA polymerase II promoter;9.15032279005192e-05!GO:0016859;cis-trans isomerase activity;9.17764259752407e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.4370850464697e-05!GO:0051170;nuclear import;0.00010108322100169!GO:0051325;interphase;0.000101672179687158!GO:0003684;damaged DNA binding;0.000104371641885208!GO:0031968;organelle outer membrane;0.000104371641885208!GO:0046489;phosphoinositide biosynthetic process;0.000105342846131384!GO:0030659;cytoplasmic vesicle membrane;0.000110374383962705!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000112855364616901!GO:0051789;response to protein stimulus;0.000136686216059882!GO:0006986;response to unfolded protein;0.000136686216059882!GO:0008610;lipid biosynthetic process;0.000139132206226356!GO:0008033;tRNA processing;0.000139521508576872!GO:0019867;outer membrane;0.000141552984114552!GO:0044262;cellular carbohydrate metabolic process;0.00014190362240125!GO:0046519;sphingoid metabolic process;0.000152105371291913!GO:0006672;ceramide metabolic process;0.000158312603062909!GO:0005769;early endosome;0.000158967805534548!GO:0048471;perinuclear region of cytoplasm;0.000172766187816743!GO:0044452;nucleolar part;0.000191763891657645!GO:0043021;ribonucleoprotein binding;0.000196668553546663!GO:0006383;transcription from RNA polymerase III promoter;0.000200701716856307!GO:0007034;vacuolar transport;0.000206684028657997!GO:0045786;negative regulation of progression through cell cycle;0.000207900099555406!GO:0030867;rough endoplasmic reticulum membrane;0.00021930054327521!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000223853705944661!GO:0043284;biopolymer biosynthetic process;0.000225139969169485!GO:0006606;protein import into nucleus;0.000225661813326517!GO:0007088;regulation of mitosis;0.000235733519919976!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000245795268796137!GO:0006626;protein targeting to mitochondrion;0.000247796744568185!GO:0031072;heat shock protein binding;0.000253816617698097!GO:0006310;DNA recombination;0.000270015606582583!GO:0016310;phosphorylation;0.000275004172964103!GO:0006414;translational elongation;0.000276722048491928!GO:0043681;protein import into mitochondrion;0.000310319451139743!GO:0051427;hormone receptor binding;0.000324299648717758!GO:0044433;cytoplasmic vesicle part;0.000325816408591384!GO:0005048;signal sequence binding;0.0003283450214635!GO:0051168;nuclear export;0.000330000669787931!GO:0043069;negative regulation of programmed cell death;0.000332122462080397!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000333055145490816!GO:0006839;mitochondrial transport;0.000333440935340999!GO:0005741;mitochondrial outer membrane;0.000334381998853604!GO:0016363;nuclear matrix;0.000336811372943878!GO:0005885;Arp2/3 protein complex;0.000360865801610432!GO:0043066;negative regulation of apoptosis;0.000394375959470579!GO:0022890;inorganic cation transmembrane transporter activity;0.000461092779519593!GO:0006302;double-strand break repair;0.000461749322992082!GO:0012506;vesicle membrane;0.000473775175773776!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000499702418149531!GO:0019748;secondary metabolic process;0.000515834358113474!GO:0005905;coated pit;0.000526744083533948!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000532054084712249!GO:0003713;transcription coactivator activity;0.000555669814121969!GO:0030384;phosphoinositide metabolic process;0.000563129624617623!GO:0008186;RNA-dependent ATPase activity;0.000581851709501711!GO:0005667;transcription factor complex;0.000588379465439777!GO:0005874;microtubule;0.000588379465439777!GO:0003682;chromatin binding;0.000591856428378443!GO:0005774;vacuolar membrane;0.00059745532517092!GO:0031252;leading edge;0.000609296376733776!GO:0015631;tubulin binding;0.000620138157066142!GO:0035257;nuclear hormone receptor binding;0.00064150755847819!GO:0007059;chromosome segregation;0.000643610568399348!GO:0031902;late endosome membrane;0.000698244828254379!GO:0051920;peroxiredoxin activity;0.000709347668446649!GO:0005791;rough endoplasmic reticulum;0.000720028126599761!GO:0007006;mitochondrial membrane organization and biogenesis;0.000786252024125437!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000793871680242292!GO:0000776;kinetochore;0.000809427386716144!GO:0003729;mRNA binding;0.000814719243164432!GO:0042802;identical protein binding;0.000873366292277939!GO:0004576;oligosaccharyl transferase activity;0.000873366292277939!GO:0046483;heterocycle metabolic process;0.000914522689960018!GO:0019752;carboxylic acid metabolic process;0.00101265011246717!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00101265011246717!GO:0006082;organic acid metabolic process;0.00101265011246717!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00105888895279476!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00105888895279476!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00105888895279476!GO:0007040;lysosome organization and biogenesis;0.0010877252130555!GO:0006644;phospholipid metabolic process;0.00115807079853921!GO:0019899;enzyme binding;0.00119947741028817!GO:0004518;nuclease activity;0.00126411597360323!GO:0008250;oligosaccharyl transferase complex;0.00126411597360323!GO:0004527;exonuclease activity;0.00128217309021128!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00128845808990698!GO:0033116;ER-Golgi intermediate compartment membrane;0.00131982100012689!GO:0006497;protein amino acid lipidation;0.00141092762143869!GO:0016126;sterol biosynthetic process;0.0014667458802339!GO:0042158;lipoprotein biosynthetic process;0.00146974467244936!GO:0007093;mitotic cell cycle checkpoint;0.00147747921018063!GO:0004004;ATP-dependent RNA helicase activity;0.00152761600546841!GO:0044437;vacuolar part;0.00161602797493911!GO:0003678;DNA helicase activity;0.00163405689899771!GO:0030176;integral to endoplasmic reticulum membrane;0.00167459702316617!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00167459702316617!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00167459702316617!GO:0048523;negative regulation of cellular process;0.00168578938780669!GO:0006506;GPI anchor biosynthetic process;0.00170987661057804!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00174085249213229!GO:0003714;transcription corepressor activity;0.00179770977483872!GO:0030133;transport vesicle;0.00181085028961836!GO:0008632;apoptotic program;0.0018246838160835!GO:0048487;beta-tubulin binding;0.00189753565135428!GO:0003690;double-stranded DNA binding;0.00206136982964563!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00210093167869953!GO:0007041;lysosomal transport;0.00217494294981233!GO:0007033;vacuole organization and biogenesis;0.00223312573430271!GO:0006505;GPI anchor metabolic process;0.00235155689667083!GO:0030658;transport vesicle membrane;0.00242679786213374!GO:0005637;nuclear inner membrane;0.00249937980741872!GO:0030880;RNA polymerase complex;0.0025118001668105!GO:0016563;transcription activator activity;0.00252711441684574!GO:0007052;mitotic spindle organization and biogenesis;0.00252723110298722!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00266177295485292!GO:0005876;spindle microtubule;0.00266177295485292!GO:0006778;porphyrin metabolic process;0.00267341109679956!GO:0033013;tetrapyrrole metabolic process;0.00267341109679956!GO:0008022;protein C-terminus binding;0.00278390317670306!GO:0000059;protein import into nucleus, docking;0.0028400963466461!GO:0016197;endosome transport;0.00284359901070501!GO:0005765;lysosomal membrane;0.00311596278768996!GO:0018196;peptidyl-asparagine modification;0.00326999262812128!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00326999262812128!GO:0016741;transferase activity, transferring one-carbon groups;0.0032791640426693!GO:0050794;regulation of cellular process;0.00334698334937265!GO:0006289;nucleotide-excision repair;0.00336827936381755!GO:0008168;methyltransferase activity;0.00370183546584156!GO:0030663;COPI coated vesicle membrane;0.0038517483911671!GO:0030126;COPI vesicle coat;0.0038517483911671!GO:0042393;histone binding;0.00386815384164702!GO:0006284;base-excision repair;0.00390298338829445!GO:0006509;membrane protein ectodomain proteolysis;0.00402554639698531!GO:0033619;membrane protein proteolysis;0.00402554639698531!GO:0048500;signal recognition particle;0.00405039119046889!GO:0007243;protein kinase cascade;0.00407052197327924!GO:0032508;DNA duplex unwinding;0.00425241944005259!GO:0032392;DNA geometric change;0.00425241944005259!GO:0065009;regulation of a molecular function;0.00425644783889306!GO:0006401;RNA catabolic process;0.00483078712925874!GO:0006891;intra-Golgi vesicle-mediated transport;0.00491895250492567!GO:0006520;amino acid metabolic process;0.00523567104438615!GO:0005684;U2-dependent spliceosome;0.00532882342802482!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00557217584151181!GO:0000428;DNA-directed RNA polymerase complex;0.00557217584151181!GO:0048069;eye pigmentation;0.00569973606988016!GO:0008312;7S RNA binding;0.00574702965041602!GO:0042168;heme metabolic process;0.00587550966982005!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00587550966982005!GO:0006007;glucose catabolic process;0.00588833147183876!GO:0016564;transcription repressor activity;0.0059367427348138!GO:0008320;protein transmembrane transporter activity;0.00604747032480504!GO:0051087;chaperone binding;0.0061411437385168!GO:0030118;clathrin coat;0.00616600546937768!GO:0006402;mRNA catabolic process;0.00617420683882094!GO:0048154;S100 beta binding;0.00629508354543314!GO:0030660;Golgi-associated vesicle membrane;0.00638618124737111!GO:0006268;DNA unwinding during replication;0.00652025748359647!GO:0051252;regulation of RNA metabolic process;0.00663709545583315!GO:0016860;intramolecular oxidoreductase activity;0.00667204640781575!GO:0006338;chromatin remodeling;0.00673206421337271!GO:0044255;cellular lipid metabolic process;0.0067876103886191!GO:0006779;porphyrin biosynthetic process;0.00688070006178243!GO:0033014;tetrapyrrole biosynthetic process;0.00688070006178243!GO:0016408;C-acyltransferase activity;0.00697186686454933!GO:0006695;cholesterol biosynthetic process;0.00700868145994676!GO:0003746;translation elongation factor activity;0.00703758816444254!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00760504134505115!GO:0015002;heme-copper terminal oxidase activity;0.00760504134505115!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00760504134505115!GO:0004129;cytochrome-c oxidase activity;0.00760504134505115!GO:0050662;coenzyme binding;0.00767066739159699!GO:0030137;COPI-coated vesicle;0.00767931173131374!GO:0022406;membrane docking;0.00770299592590195!GO:0048278;vesicle docking;0.00770299592590195!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0078199575570431!GO:0045047;protein targeting to ER;0.0078199575570431!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00783696326018584!GO:0033162;melanosome membrane;0.00836413671261878!GO:0045009;chitosome;0.00836413671261878!GO:0035258;steroid hormone receptor binding;0.00838508333155996!GO:0000922;spindle pole;0.00882877085386975!GO:0051052;regulation of DNA metabolic process;0.00895179414207219!GO:0007010;cytoskeleton organization and biogenesis;0.00896379086659208!GO:0000910;cytokinesis;0.0089768758176343!GO:0006220;pyrimidine nucleotide metabolic process;0.00916530519940068!GO:0006405;RNA export from nucleus;0.00926412481535281!GO:0005869;dynactin complex;0.00958472891082115!GO:0031970;organelle envelope lumen;0.00974393818177913!GO:0031301;integral to organelle membrane;0.0097487512722836!GO:0030496;midbody;0.00987610757539881!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0102399525236491!GO:0005758;mitochondrial intermembrane space;0.0104412313503042!GO:0031124;mRNA 3'-end processing;0.0104500120199354!GO:0006726;eye pigment biosynthetic process;0.0106756457050742!GO:0042441;eye pigment metabolic process;0.0106756457050742!GO:0006611;protein export from nucleus;0.0107956554968755!GO:0005975;carbohydrate metabolic process;0.0108527289237514!GO:0030145;manganese ion binding;0.0109719078531774!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0109726955671975!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0109968515957221!GO:0000049;tRNA binding;0.0111312845713335!GO:0007017;microtubule-based process;0.0111741951666777!GO:0008180;signalosome;0.0111793176843738!GO:0008234;cysteine-type peptidase activity;0.0112998297171022!GO:0006904;vesicle docking during exocytosis;0.0113339851717298!GO:0017166;vinculin binding;0.0113444823799476!GO:0048519;negative regulation of biological process;0.0115500552623868!GO:0003711;transcription elongation regulator activity;0.0118203690291742!GO:0006352;transcription initiation;0.0119166121220018!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0119246491169791!GO:0005832;chaperonin-containing T-complex;0.0122462157659255!GO:0043488;regulation of mRNA stability;0.0122462157659255!GO:0043487;regulation of RNA stability;0.0122462157659255!GO:0030149;sphingolipid catabolic process;0.0122462157659255!GO:0031529;ruffle organization and biogenesis;0.0126980217444939!GO:0000287;magnesium ion binding;0.0127510127554772!GO:0005996;monosaccharide metabolic process;0.0132266740166223!GO:0019206;nucleoside kinase activity;0.0132791503589908!GO:0019377;glycolipid catabolic process;0.013545398021271!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0142696151989457!GO:0016272;prefoldin complex;0.0142810151438351!GO:0004003;ATP-dependent DNA helicase activity;0.0143361143770426!GO:0006595;polyamine metabolic process;0.0144186677936951!GO:0008139;nuclear localization sequence binding;0.0144401050079303!GO:0006783;heme biosynthetic process;0.0144406793807386!GO:0008017;microtubule binding;0.0147722225907401!GO:0051540;metal cluster binding;0.0153643481919904!GO:0051536;iron-sulfur cluster binding;0.0153643481919904!GO:0030119;AP-type membrane coat adaptor complex;0.015564296067449!GO:0001573;ganglioside metabolic process;0.015564296067449!GO:0019318;hexose metabolic process;0.015938982352907!GO:0000082;G1/S transition of mitotic cell cycle;0.0167247560636655!GO:0001725;stress fiber;0.0167247560636655!GO:0032432;actin filament bundle;0.0167247560636655!GO:0000339;RNA cap binding;0.0170266269390627!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0172608738493357!GO:0016584;nucleosome positioning;0.0174233278730784!GO:0031901;early endosome membrane;0.0175117984336809!GO:0016044;membrane organization and biogenesis;0.0176406598483745!GO:0006144;purine base metabolic process;0.0176533709679816!GO:0045045;secretory pathway;0.0178775535052045!GO:0009262;deoxyribonucleotide metabolic process;0.0182472571910546!GO:0007346;regulation of progression through mitotic cell cycle;0.0185371867460178!GO:0006733;oxidoreduction coenzyme metabolic process;0.0186070212476052!GO:0050811;GABA receptor binding;0.0186676354966893!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0187210676824175!GO:0010257;NADH dehydrogenase complex assembly;0.0187210676824175!GO:0033108;mitochondrial respiratory chain complex assembly;0.0187210676824175!GO:0051287;NAD binding;0.0188581935388131!GO:0051452;cellular pH reduction;0.0190073349749595!GO:0051453;regulation of cellular pH;0.0190073349749595!GO:0045851;pH reduction;0.0190073349749595!GO:0006807;nitrogen compound metabolic process;0.0192795061808781!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0196001316260696!GO:0004532;exoribonuclease activity;0.0196694999962148!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0196694999962148!GO:0030131;clathrin adaptor complex;0.0204103676177043!GO:0043022;ribosome binding;0.0204103676177043!GO:0007021;tubulin folding;0.0207238064167648!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0210778043651759!GO:0030132;clathrin coat of coated pit;0.0215783091224931!GO:0046479;glycosphingolipid catabolic process;0.0216004787293474!GO:0008408;3'-5' exonuclease activity;0.0234270115384174!GO:0045792;negative regulation of cell size;0.0236708633602142!GO:0030125;clathrin vesicle coat;0.0236708633602142!GO:0030665;clathrin coated vesicle membrane;0.0236708633602142!GO:0030308;negative regulation of cell growth;0.0241972096457863!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0242290861052428!GO:0009308;amine metabolic process;0.0244889094847396!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0247299872852802!GO:0006740;NADPH regeneration;0.0251117802786377!GO:0006098;pentose-phosphate shunt;0.0251117802786377!GO:0009451;RNA modification;0.0252584081695229!GO:0006417;regulation of translation;0.025354839451814!GO:0050790;regulation of catalytic activity;0.0254867635225813!GO:0043130;ubiquitin binding;0.0260884450955623!GO:0032182;small conjugating protein binding;0.0260884450955623!GO:0006270;DNA replication initiation;0.0266451341336761!GO:0030134;ER to Golgi transport vesicle;0.0266451341336761!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0267498821033709!GO:0046813;virion attachment, binding of host cell surface receptor;0.0267498821033709!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0267498821033709!GO:0050931;pigment cell differentiation;0.0267768124679247!GO:0030318;melanocyte differentiation;0.0267768124679247!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0268325209741175!GO:0004177;aminopeptidase activity;0.0270613319442578!GO:0031324;negative regulation of cellular metabolic process;0.027157387794004!GO:0001726;ruffle;0.027435366004043!GO:0007050;cell cycle arrest;0.0274869367517665!GO:0006665;sphingolipid metabolic process;0.0278433607732973!GO:0043596;nuclear replication fork;0.0278518623379899!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0281782125347453!GO:0008538;proteasome activator activity;0.0283533014746667!GO:0000178;exosome (RNase complex);0.0288311827148456!GO:0051539;4 iron, 4 sulfur cluster binding;0.0289421134111102!GO:0030508;thiol-disulfide exchange intermediate activity;0.0293328587941613!GO:0030521;androgen receptor signaling pathway;0.0293328587941613!GO:0008092;cytoskeletal protein binding;0.0294427363753809!GO:0022884;macromolecule transmembrane transporter activity;0.0296413963790432!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0296413963790432!GO:0004503;monophenol monooxygenase activity;0.0302984162280966!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.0302984162280966!GO:0009116;nucleoside metabolic process;0.0303374217602634!GO:0007264;small GTPase mediated signal transduction;0.0304359629041658!GO:0008333;endosome to lysosome transport;0.0307824638045484!GO:0048037;cofactor binding;0.0308940112323762!GO:0005784;translocon complex;0.0310272846586366!GO:0030127;COPII vesicle coat;0.0310412764287165!GO:0012507;ER to Golgi transport vesicle membrane;0.0310412764287165!GO:0006378;mRNA polyadenylation;0.0313887506211136!GO:0006096;glycolysis;0.0314075198882471!GO:0043065;positive regulation of apoptosis;0.0315010147957926!GO:0008637;apoptotic mitochondrial changes;0.0325466295004865!GO:0045947;negative regulation of translational initiation;0.0329050458035367!GO:0008287;protein serine/threonine phosphatase complex;0.0341478291952176!GO:0000030;mannosyltransferase activity;0.0343030566951186!GO:0006767;water-soluble vitamin metabolic process;0.0343639067715334!GO:0030140;trans-Golgi network transport vesicle;0.0343747054038016!GO:0003923;GPI-anchor transamidase activity;0.0343747054038016!GO:0016255;attachment of GPI anchor to protein;0.0343747054038016!GO:0042765;GPI-anchor transamidase complex;0.0343747054038016!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0345207600977509!GO:0006308;DNA catabolic process;0.0345343777521035!GO:0031123;RNA 3'-end processing;0.0346481298932044!GO:0000209;protein polyubiquitination;0.0347090493352358!GO:0006275;regulation of DNA replication;0.0347151439403865!GO:0033559;unsaturated fatty acid metabolic process;0.034756482204167!GO:0006636;unsaturated fatty acid biosynthetic process;0.034756482204167!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0351045060397919!GO:0046365;monosaccharide catabolic process;0.0354497381905198!GO:0050178;phenylpyruvate tautomerase activity;0.0372065210169531!GO:0043068;positive regulation of programmed cell death;0.0372065210169531!GO:0006376;mRNA splice site selection;0.0372119695230337!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0372119695230337!GO:0009266;response to temperature stimulus;0.0373684833583856!GO:0030036;actin cytoskeleton organization and biogenesis;0.0373684833583856!GO:0050681;androgen receptor binding;0.0373684833583856!GO:0008299;isoprenoid biosynthetic process;0.0377598907767617!GO:0006066;alcohol metabolic process;0.0381192887761543!GO:0004536;deoxyribonuclease activity;0.0392646926167729!GO:0006635;fatty acid beta-oxidation;0.0393032555832016!GO:0004197;cysteine-type endopeptidase activity;0.0396592237492599!GO:0006519;amino acid and derivative metabolic process;0.0396592237492599!GO:0035035;histone acetyltransferase binding;0.040097082553606!GO:0044438;microbody part;0.0401188548690002!GO:0044439;peroxisomal part;0.0401188548690002!GO:0016125;sterol metabolic process;0.0402788022125939!GO:0004300;enoyl-CoA hydratase activity;0.0403804330958869!GO:0008361;regulation of cell size;0.0404466063308984!GO:0000725;recombinational repair;0.0408121239493924!GO:0000724;double-strand break repair via homologous recombination;0.0408121239493924!GO:0004549;tRNA-specific ribonuclease activity;0.040935862789027!GO:0030911;TPR domain binding;0.0410418668626335!GO:0030433;ER-associated protein catabolic process;0.0414817223285369!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0414817223285369!GO:0045926;negative regulation of growth;0.04166196994092!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0427687470123047!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0428300814090124!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0428300814090124!GO:0004287;prolyl oligopeptidase activity;0.0428431765541801!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0429031595429833!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0435620401291518!GO:0006917;induction of apoptosis;0.044349539744913!GO:0003756;protein disulfide isomerase activity;0.0454101718753058!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0454101718753058!GO:0001558;regulation of cell growth;0.0479418170592632!GO:0008047;enzyme activator activity;0.0479418170592632!GO:0004526;ribonuclease P activity;0.0480236232068354!GO:0004563;beta-N-acetylhexosaminidase activity;0.0482437994771808!GO:0016049;cell growth;0.0482437994771808!GO:0000152;nuclear ubiquitin ligase complex;0.0485676160098738!GO:0005777;peroxisome;0.0485676160098738!GO:0042579;microbody;0.0485676160098738!GO:0004523;ribonuclease H activity;0.0485676160098738!GO:0016603;glutaminyl-peptide cyclotransferase activity;0.0487791945705037!GO:0006914;autophagy;0.0487791945705037!GO:0030027;lamellipodium;0.0487791945705037!GO:0004680;casein kinase activity;0.049384293429986
|sample_id=12739
|sample_id=12739
|sample_note=
|sample_note=
Line 75: Line 99:
|sample_strain=
|sample_strain=
|sample_tissue=skin
|sample_tissue=skin
|timecourse=Melanocytic_differentiation
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.73950338843;HOX{A6,A7,B6,B7}:2.47473681932;ESRRA:2.24631200202;PAX6:1.97017111398;EN1,2:1.87094176053;NR3C1:1.74730171199;SREBF1,2:1.6210843987;POU3F1..4:1.44069489136;HOX{A4,D4}:1.31788010294;RXR{A,B,G}:1.29699880717;ZNF423:1.17902550642;bHLH_family:1.16600226107;NFE2L1:1.11520229325;NR5A1,2:1.07760055685;FOXQ1:1.00504475472;NANOG:0.953505105866;HES1:0.933203243989;XCPE1{core}:0.896147582025;TFDP1:0.852986757696;E2F1..5:0.790141146667;OCT4_SOX2{dimer}:0.771382209321;PAX8:0.760487830521;POU1F1:0.755597261527;CDC5L:0.748030892729;PAX1,9:0.710633425076;LHX3,4:0.689073010984;ALX4:0.602234427323;GFI1:0.549786456572;EVI1:0.546961076497;VSX1,2:0.543862045674;TP53:0.531983579181;NKX3-1:0.494844341177;HNF4A_NR2F1,2:0.466244940751;ZNF143:0.464678033241;EP300:0.461147070262;ALX1:0.452641761481;FOX{F1,F2,J1}:0.445334440381;NFY{A,B,C}:0.432121902053;PBX1:0.420399844507;HOXA9_MEIS1:0.415798480855;HSF1,2:0.392695167896;NFIX:0.377622632053;FOXL1:0.368527503537;NKX2-3_NKX2-5:0.31577901536;FOXD3:0.298362161366;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282922455216;PRRX1,2:0.265443143991;STAT1,3:0.261619895868;NKX6-1,2:0.248218451463;SOX{8,9,10}:0.243679269059;ELK1,4_GABP{A,B1}:0.210966860095;UFEwm:0.196220664647;ARID5B:0.195892288468;TLX1..3_NFIC{dimer}:0.187389854081;SPZ1:0.176168180024;NKX2-2,8:0.165172309417;MYBL2:0.156095937411;DMAP1_NCOR{1,2}_SMARC:0.139734015742;JUN:0.1371669953;ESR1:0.13556677626;TEF:0.1349405724;XBP1:0.127315967728;HBP1_HMGB_SSRP1_UBTF:0.116958314203;YY1:0.113323110694;TFCP2:0.0996592096016;HAND1,2:0.0710507933417;EBF1:0.0646545377798;CUX2:0.0469795976354;NRF1:0.0427555341151;RFX2..5_RFXANK_RFXAP:0.0358859149415;REST:0.0287745799039;ZNF238:0.00221105910692;GFI1B:-0.0188515367163;PAX4:-0.0361932955362;CRX:-0.042489006794;ZBTB6:-0.0454527252208;LMO2:-0.0529165599654;SOX17:-0.0588685940525;MYB:-0.0641328877413;ONECUT1,2:-0.0654953033862;SOX5:-0.0702992633105;BACH2:-0.0766314724565;GTF2A1,2:-0.0824961986979;SOX2:-0.0831328730068;ZNF148:-0.0962377085372;NKX3-2:-0.102654640489;HNF1A:-0.115445400476;AR:-0.132983989555;PAX5:-0.134456318548;HIC1:-0.15628461586;AIRE:-0.157167599642;NFIL3:-0.1785303514;RFX1:-0.178894650229;FOXM1:-0.180200093636;FOSL2:-0.181907402388;GCM1,2:-0.203024352859;CDX1,2,4:-0.210001625639;GLI1..3:-0.211525340581;SPIB:-0.232527399743;HOX{A5,B5}:-0.234147148324;IRF7:-0.236454772621;RUNX1..3:-0.240867026419;NHLH1,2:-0.24171289926;FOXA2:-0.243838921116;CEBPA,B_DDIT3:-0.253836502458;RORA:-0.257707107968;POU2F1..3:-0.258801977559;KLF4:-0.273490893828;ELF1,2,4:-0.274927029128;TEAD1:-0.276748510149;TOPORS:-0.289747450175;POU6F1:-0.295676842788;NR1H4:-0.29921390507;FOS_FOS{B,L1}_JUN{B,D}:-0.311267237146;SPI1:-0.320811055463;PAX2:-0.325533398835;ADNP_IRX_SIX_ZHX:-0.328518698873;FOXP3:-0.334845023285;TAL1_TCF{3,4,12}:-0.338253988907;IRF1,2:-0.339827299278;SP1:-0.349149741961;GTF2I:-0.351965814402;MEF2{A,B,C,D}:-0.366515436859;NFE2:-0.371589561108;ZIC1..3:-0.37726683201;LEF1_TCF7_TCF7L1,2:-0.429417268308;RXRA_VDR{dimer}:-0.436258711054;ZNF384:-0.451540500443;FOX{I1,J2}:-0.455480654421;HMGA1,2:-0.456279341104;BPTF:-0.469448689625;IKZF2:-0.475299716157;ATF4:-0.47853474998;SNAI1..3:-0.481026137144;TLX2:-0.485879682702;ATF2:-0.4970569467;PPARG:-0.50423115368;ETS1,2:-0.511974611432;NFKB1_REL_RELA:-0.513802482826;IKZF1:-0.515392324822;NFE2L2:-0.524039731527;CREB1:-0.528013919072;FOX{D1,D2}:-0.529078417157;GATA6:-0.535334274584;FOXO1,3,4:-0.551376936028;FOXP1:-0.572614545411;ZEB1:-0.594204075284;ATF5_CREB3:-0.60759240543;ZBTB16:-0.61716000507;HLF:-0.623741334868;SMAD1..7,9:-0.628290530837;STAT5{A,B}:-0.646050643714;MAFB:-0.651146934347;STAT2,4,6:-0.659673681316;NR6A1:-0.666191527155;PITX1..3:-0.668870967874;HMX1:-0.676169260881;GATA4:-0.709169162315;RREB1:-0.711467470924;PRDM1:-0.713906525417;MTF1:-0.714071412495;GZF1:-0.722005384093;RBPJ:-0.724123339656;ZFP161:-0.725362181732;NKX2-1,4:-0.727739753501;MYOD1:-0.734256887922;MAZ:-0.742647163898;BREu{core}:-0.757557096525;PDX1:-0.791231844836;MED-1{core}:-0.8012409584;TFAP2B:-0.812227897263;NFATC1..3:-0.853856554362;AHR_ARNT_ARNT2:-0.868210850885;TBP:-0.869563497561;NANOG{mouse}:-0.936547167256;EGR1..3:-0.943716312038;TFAP2{A,C}:-0.954298230896;SRF:-0.991046879742;TFAP4:-1.001385955;TGIF1:-1.01597718396;FOXN1:-1.049402255;ATF6:-1.04965230844;DBP:-1.05783149392;PAX3,7:-1.10716148854;MTE{core}:-1.14573675324;PATZ1:-1.17004755612;MYFfamily:-1.18584681671;MZF1:-1.22037682385;POU5F1:-1.25632093099;HIF1A:-1.4090121641;TBX4,5:-1.52366617443;T:-1.7393045767
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.73950338843;HOX{A6,A7,B6,B7}:2.47473681932;ESRRA:2.24631200202;PAX6:1.97017111398;EN1,2:1.87094176053;NR3C1:1.74730171199;SREBF1,2:1.6210843987;POU3F1..4:1.44069489136;HOX{A4,D4}:1.31788010294;RXR{A,B,G}:1.29699880717;ZNF423:1.17902550642;bHLH_family:1.16600226107;NFE2L1:1.11520229325;NR5A1,2:1.07760055685;FOXQ1:1.00504475472;NANOG:0.953505105866;HES1:0.933203243989;XCPE1{core}:0.896147582025;TFDP1:0.852986757696;E2F1..5:0.790141146667;OCT4_SOX2{dimer}:0.771382209321;PAX8:0.760487830521;POU1F1:0.755597261527;CDC5L:0.748030892729;PAX1,9:0.710633425076;LHX3,4:0.689073010984;ALX4:0.602234427323;GFI1:0.549786456572;EVI1:0.546961076497;VSX1,2:0.543862045674;TP53:0.531983579181;NKX3-1:0.494844341177;HNF4A_NR2F1,2:0.466244940751;ZNF143:0.464678033241;EP300:0.461147070262;ALX1:0.452641761481;FOX{F1,F2,J1}:0.445334440381;NFY{A,B,C}:0.432121902053;PBX1:0.420399844507;HOXA9_MEIS1:0.415798480855;HSF1,2:0.392695167896;NFIX:0.377622632053;FOXL1:0.368527503537;NKX2-3_NKX2-5:0.31577901536;FOXD3:0.298362161366;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282922455216;PRRX1,2:0.265443143991;STAT1,3:0.261619895868;NKX6-1,2:0.248218451463;SOX{8,9,10}:0.243679269059;ELK1,4_GABP{A,B1}:0.210966860095;UFEwm:0.196220664647;ARID5B:0.195892288468;TLX1..3_NFIC{dimer}:0.187389854081;SPZ1:0.176168180024;NKX2-2,8:0.165172309417;MYBL2:0.156095937411;DMAP1_NCOR{1,2}_SMARC:0.139734015742;JUN:0.1371669953;ESR1:0.13556677626;TEF:0.1349405724;XBP1:0.127315967728;HBP1_HMGB_SSRP1_UBTF:0.116958314203;YY1:0.113323110694;TFCP2:0.0996592096016;HAND1,2:0.0710507933417;EBF1:0.0646545377798;CUX2:0.0469795976354;NRF1:0.0427555341151;RFX2..5_RFXANK_RFXAP:0.0358859149415;REST:0.0287745799039;ZNF238:0.00221105910692;GFI1B:-0.0188515367163;PAX4:-0.0361932955362;CRX:-0.042489006794;ZBTB6:-0.0454527252208;LMO2:-0.0529165599654;SOX17:-0.0588685940525;MYB:-0.0641328877413;ONECUT1,2:-0.0654953033862;SOX5:-0.0702992633105;BACH2:-0.0766314724565;GTF2A1,2:-0.0824961986979;SOX2:-0.0831328730068;ZNF148:-0.0962377085372;NKX3-2:-0.102654640489;HNF1A:-0.115445400476;AR:-0.132983989555;PAX5:-0.134456318548;HIC1:-0.15628461586;AIRE:-0.157167599642;NFIL3:-0.1785303514;RFX1:-0.178894650229;FOXM1:-0.180200093636;FOSL2:-0.181907402388;GCM1,2:-0.203024352859;CDX1,2,4:-0.210001625639;GLI1..3:-0.211525340581;SPIB:-0.232527399743;HOX{A5,B5}:-0.234147148324;IRF7:-0.236454772621;RUNX1..3:-0.240867026419;NHLH1,2:-0.24171289926;FOXA2:-0.243838921116;CEBPA,B_DDIT3:-0.253836502458;RORA:-0.257707107968;POU2F1..3:-0.258801977559;KLF4:-0.273490893828;ELF1,2,4:-0.274927029128;TEAD1:-0.276748510149;TOPORS:-0.289747450175;POU6F1:-0.295676842788;NR1H4:-0.29921390507;FOS_FOS{B,L1}_JUN{B,D}:-0.311267237146;SPI1:-0.320811055463;PAX2:-0.325533398835;ADNP_IRX_SIX_ZHX:-0.328518698873;FOXP3:-0.334845023285;TAL1_TCF{3,4,12}:-0.338253988907;IRF1,2:-0.339827299278;SP1:-0.349149741961;GTF2I:-0.351965814402;MEF2{A,B,C,D}:-0.366515436859;NFE2:-0.371589561108;ZIC1..3:-0.37726683201;LEF1_TCF7_TCF7L1,2:-0.429417268308;RXRA_VDR{dimer}:-0.436258711054;ZNF384:-0.451540500443;FOX{I1,J2}:-0.455480654421;HMGA1,2:-0.456279341104;BPTF:-0.469448689625;IKZF2:-0.475299716157;ATF4:-0.47853474998;SNAI1..3:-0.481026137144;TLX2:-0.485879682702;ATF2:-0.4970569467;PPARG:-0.50423115368;ETS1,2:-0.511974611432;NFKB1_REL_RELA:-0.513802482826;IKZF1:-0.515392324822;NFE2L2:-0.524039731527;CREB1:-0.528013919072;FOX{D1,D2}:-0.529078417157;GATA6:-0.535334274584;FOXO1,3,4:-0.551376936028;FOXP1:-0.572614545411;ZEB1:-0.594204075284;ATF5_CREB3:-0.60759240543;ZBTB16:-0.61716000507;HLF:-0.623741334868;SMAD1..7,9:-0.628290530837;STAT5{A,B}:-0.646050643714;MAFB:-0.651146934347;STAT2,4,6:-0.659673681316;NR6A1:-0.666191527155;PITX1..3:-0.668870967874;HMX1:-0.676169260881;GATA4:-0.709169162315;RREB1:-0.711467470924;PRDM1:-0.713906525417;MTF1:-0.714071412495;GZF1:-0.722005384093;RBPJ:-0.724123339656;ZFP161:-0.725362181732;NKX2-1,4:-0.727739753501;MYOD1:-0.734256887922;MAZ:-0.742647163898;BREu{core}:-0.757557096525;PDX1:-0.791231844836;MED-1{core}:-0.8012409584;TFAP2B:-0.812227897263;NFATC1..3:-0.853856554362;AHR_ARNT_ARNT2:-0.868210850885;TBP:-0.869563497561;NANOG{mouse}:-0.936547167256;EGR1..3:-0.943716312038;TFAP2{A,C}:-0.954298230896;SRF:-0.991046879742;TFAP4:-1.001385955;TGIF1:-1.01597718396;FOXN1:-1.049402255;ATF6:-1.04965230844;DBP:-1.05783149392;PAX3,7:-1.10716148854;MTE{core}:-1.14573675324;PATZ1:-1.17004755612;MYFfamily:-1.18584681671;MZF1:-1.22037682385;POU5F1:-1.25632093099;HIF1A:-1.4090121641;TBX4,5:-1.52366617443;T:-1.7393045767
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12739-135I3;search_select_hide=table117:FF:12739-135I3
}}
}}

Latest revision as of 18:43, 4 June 2020

Name:Melanocyte, donor2 (MC+2)
Species:Human (Homo sapiens)
Library ID:CNhs13156
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
ageNA
cell typemelanocyte
cell lineNA
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004961
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13156 CAGE DRX008595 DRR009467
Accession ID Hg19

Library idBAMCTSS
CNhs13156 DRZ000892 DRZ002277
Accession ID Hg38

Library idBAMCTSS
CNhs13156 DRZ012242 DRZ013627
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
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C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.398
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13156

Jaspar motifP-value
MA0002.20.769
MA0003.10.529
MA0004.12.49125e-4
MA0006.10.707
MA0007.10.0667
MA0009.10.994
MA0014.10.281
MA0017.10.0451
MA0018.20.276
MA0019.10.88
MA0024.11.62988e-4
MA0025.10.0366
MA0027.10.869
MA0028.10.0255
MA0029.10.376
MA0030.10.0169
MA0031.10.132
MA0035.20.365
MA0038.10.201
MA0039.20.0896
MA0040.10.556
MA0041.10.914
MA0042.10.311
MA0043.12.70268e-6
MA0046.10.0371
MA0047.20.251
MA0048.10.427
MA0050.10.104
MA0051.10.485
MA0052.10.123
MA0055.11.53996e-4
MA0057.10.246
MA0058.14.18988e-7
MA0059.11.17419e-4
MA0060.10.00758
MA0061.10.163
MA0062.20.0238
MA0065.26.55967e-4
MA0066.10.0485
MA0067.10.0922
MA0068.10.0387
MA0069.10.133
MA0070.10.205
MA0071.10.482
MA0072.10.107
MA0073.10.566
MA0074.10.0953
MA0076.10.116
MA0077.10.357
MA0078.10.689
MA0079.20.894
MA0080.23.8959e-4
MA0081.10.585
MA0083.11.9787e-4
MA0084.10.99
MA0087.10.284
MA0088.10.00322
MA0090.10.468
MA0091.10.176
MA0092.10.612
MA0093.16.54174e-5
MA0099.20.00621
MA0100.10.432
MA0101.10.0434
MA0102.23.33781e-4
MA0103.10.536
MA0104.20.00398
MA0105.10.328
MA0106.10.0282
MA0107.10.00222
MA0108.22.02466e-6
MA0111.10.524
MA0112.20.0608
MA0113.10.909
MA0114.10.00517
MA0115.10.02
MA0116.10.0778
MA0117.10.232
MA0119.10.364
MA0122.10.864
MA0124.10.43
MA0125.10.193
MA0131.10.543
MA0135.10.237
MA0136.10.00392
MA0137.20.232
MA0138.20.429
MA0139.10.395
MA0140.10.546
MA0141.10.00379
MA0142.10.918
MA0143.10.727
MA0144.10.194
MA0145.10.573
MA0146.10.0259
MA0147.10.00709
MA0148.10.611
MA0149.10.0149
MA0150.10.0135
MA0152.10.981
MA0153.10.989
MA0154.10.207
MA0155.10.717
MA0156.10.164
MA0157.10.491
MA0159.10.019
MA0160.10.286
MA0162.10.165
MA0163.10.00459
MA0164.10.187
MA0258.10.0495
MA0259.10.115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13156

Novel motifP-value
10.0155
100.218
1000.0206
1010.897
1020.181
1030.00724
1040.441
1050.677
1060.782
1070.538
1080.382
1090.00366
110.0205
1100.00107
1110.79
1120.614
1130.0206
1140.393
1150.939
1160.523
1170.0697
1180.0763
1190.952
120.539
1200.275
1210.652
1220.903
1230.206
1240.333
1250.261
1260.748
1270.889
1280.206
1290.147
130.013
1300.458
1310.0758
1320.758
1330.246
1340.47
1350.995
1360.0246
1370.983
1380.515
1390.0314
140.644
1400.253
1410.326
1420.383
1430.551
1440.391
1450.202
1460.0256
1470.984
1480.284
1490.697
150.342
1500.883
1510.365
1520.235
1530.318
1540.326
1550.886
1560.999
1570.866
1580.124
1590.202
160.0271
1600.311
1610.852
1620.215
1630.362
1640.45
1650.588
1660.207
1670.339
1680.422
1690.1
170.251
180.15
190.514
20.599
200.37
210.457
220.18
230.438
240.635
250.72
260.121
270.353
280.839
290.00618
30.24
300.254
310.281
320.289
330.362
340.803
350.825
360.0367
370.098
380.709
390.415
40.385
400.0204
410.901
420.819
430.419
440.0468
450.6
460.0892
470.026
480.0937
490.773
50.399
500.367
510.379
520.695
530.452
540.787
550.51
560.717
570.0467
580.206
590.643
60.0287
600.99
610.116
620.291
630.17
640.158
650.573
660.0683
670.553
680.241
690.103
70.515
700.431
710.0717
720.957
730.019
740.908
750.173
760.249
770.225
780.949
790.595
80.0193
800.79
810.544
820.626
830.176
840.885
850.531
860.869
870.00222
880.951
890.168
90.898
900.00783
910.666
920.142
930.0563
940.13
950.00107
960.882
970.368
980.0452
990.0461



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13156


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0000149 (visual pigment cell)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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