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{{f5samples
{{f5samples
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Line 35: Line 43:
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|rna_box=140
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|rna_catalog_number=
|rna_concentration=0.80
|rna_concentration=0.8
|rna_extraction_protocol=Repurified by minelute
|rna_extraction_protocol=Repurified by minelute
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|rna_lot_number=
Line 56: Line 81:
|rna_tube_id=140D1
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|sample_cell_line=MCF7
Line 69: Line 96:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=MCF7 breast cancer cell line response to Epidermal Growth Factor 1
|sample_experimental_condition=MCF7 breast cancer cell line response to Epidermal Growth Factor 1
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.30083107488843e-246!GO:0043231;intracellular membrane-bound organelle;4.90456521987727e-216!GO:0043227;membrane-bound organelle;6.69087174518561e-216!GO:0043226;organelle;2.25591281081836e-209!GO:0043229;intracellular organelle;7.5537677979384e-209!GO:0005737;cytoplasm;3.96384299334575e-169!GO:0044422;organelle part;7.15085496827804e-150!GO:0044446;intracellular organelle part;1.43461364696114e-148!GO:0044444;cytoplasmic part;4.49164526264422e-128!GO:0044237;cellular metabolic process;4.73319499840646e-96!GO:0032991;macromolecular complex;7.75227581039111e-95!GO:0005634;nucleus;2.0666041487065e-92!GO:0044238;primary metabolic process;3.87960076607563e-92!GO:0043170;macromolecule metabolic process;2.13137838604793e-83!GO:0030529;ribonucleoprotein complex;2.62635961728237e-80!GO:0005739;mitochondrion;1.85279168236981e-76!GO:0044428;nuclear part;4.88731936043528e-75!GO:0043233;organelle lumen;1.22735261781513e-72!GO:0031974;membrane-enclosed lumen;1.22735261781513e-72!GO:0003723;RNA binding;4.26251776713358e-65!GO:0005515;protein binding;4.50697601669318e-63!GO:0005840;ribosome;5.43296058274962e-53!GO:0031090;organelle membrane;9.6946479555182e-53!GO:0043283;biopolymer metabolic process;3.68184446993747e-52!GO:0044429;mitochondrial part;9.84407094638603e-49!GO:0043234;protein complex;1.74209087352423e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.11673545915938e-48!GO:0006412;translation;5.15000700291083e-47!GO:0031981;nuclear lumen;1.5796416148688e-46!GO:0003735;structural constituent of ribosome;1.90866241972306e-46!GO:0006396;RNA processing;3.44445587363216e-46!GO:0031967;organelle envelope;4.03531449366355e-44!GO:0010467;gene expression;8.66649664653717e-44!GO:0031975;envelope;9.68350687213199e-44!GO:0015031;protein transport;2.01147502399066e-42!GO:0019538;protein metabolic process;3.66850374342949e-42!GO:0033036;macromolecule localization;1.96033051409115e-41!GO:0033279;ribosomal subunit;1.94410156538154e-40!GO:0016043;cellular component organization and biogenesis;1.08993788336055e-38!GO:0044249;cellular biosynthetic process;1.39192623929618e-38!GO:0009058;biosynthetic process;1.58232261953152e-38!GO:0006259;DNA metabolic process;1.79412120320091e-38!GO:0008104;protein localization;2.38104494372245e-38!GO:0044260;cellular macromolecule metabolic process;3.5037350878363e-38!GO:0044267;cellular protein metabolic process;6.82814395657897e-38!GO:0045184;establishment of protein localization;1.7512989752402e-37!GO:0005829;cytosol;7.56688408285584e-36!GO:0009059;macromolecule biosynthetic process;8.67243472240282e-36!GO:0016071;mRNA metabolic process;8.84020552975222e-36!GO:0065003;macromolecular complex assembly;1.57720071856697e-32!GO:0043228;non-membrane-bound organelle;3.12302980088591e-32!GO:0043232;intracellular non-membrane-bound organelle;3.12302980088591e-32!GO:0005740;mitochondrial envelope;5.07467346319385e-32!GO:0019866;organelle inner membrane;1.2415315594374e-31!GO:0006397;mRNA processing;2.36993092631933e-31!GO:0008380;RNA splicing;6.70379369649497e-31!GO:0031966;mitochondrial membrane;1.62395399880689e-30!GO:0046907;intracellular transport;1.33753157809527e-29!GO:0006996;organelle organization and biogenesis;1.34519582424671e-29!GO:0005743;mitochondrial inner membrane;1.92270092153151e-29!GO:0005654;nucleoplasm;2.52681166218832e-29!GO:0022607;cellular component assembly;3.66850335419988e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.94950540242579e-28!GO:0006886;intracellular protein transport;1.38980219211706e-26!GO:0007049;cell cycle;3.15001434386485e-26!GO:0003676;nucleic acid binding;1.33856117840194e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.37072225326359e-25!GO:0044451;nucleoplasm part;3.6868926611542e-24!GO:0000166;nucleotide binding;2.69740884708003e-23!GO:0044445;cytosolic part;4.82193781001616e-23!GO:0006119;oxidative phosphorylation;8.48058314259542e-23!GO:0005681;spliceosome;9.7945682625991e-23!GO:0015934;large ribosomal subunit;2.81758894147213e-21!GO:0016874;ligase activity;3.4933485420404e-21!GO:0031980;mitochondrial lumen;6.74059137802359e-21!GO:0005759;mitochondrial matrix;6.74059137802359e-21!GO:0012505;endomembrane system;1.33701351782746e-20!GO:0016070;RNA metabolic process;1.91108624169832e-20!GO:0015935;small ribosomal subunit;2.91688175228073e-20!GO:0022402;cell cycle process;2.94217436082886e-20!GO:0006974;response to DNA damage stimulus;5.74391655973005e-20!GO:0044455;mitochondrial membrane part;9.57741520491307e-20!GO:0006512;ubiquitin cycle;1.50489470187884e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.75690990318232e-19!GO:0051649;establishment of cellular localization;2.0667661745283e-19!GO:0016462;pyrophosphatase activity;2.38963561786261e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.57618154732337e-19!GO:0017111;nucleoside-triphosphatase activity;1.0364940977731e-18!GO:0051641;cellular localization;1.04271632912141e-18!GO:0005694;chromosome;3.91212295386766e-18!GO:0051186;cofactor metabolic process;1.60954098841276e-17!GO:0051276;chromosome organization and biogenesis;1.63448603182088e-17!GO:0005730;nucleolus;2.03947172252678e-17!GO:0006281;DNA repair;2.97199085111296e-17!GO:0032553;ribonucleotide binding;4.47063588496869e-17!GO:0032555;purine ribonucleotide binding;4.47063588496869e-17!GO:0044265;cellular macromolecule catabolic process;6.31427519279645e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;8.68125812006619e-17!GO:0000278;mitotic cell cycle;8.87299884266019e-17!GO:0044427;chromosomal part;1.02180694600933e-16!GO:0005524;ATP binding;2.04437408509327e-16!GO:0032559;adenyl ribonucleotide binding;3.4468480673486e-16!GO:0017076;purine nucleotide binding;4.51840619066035e-16!GO:0006323;DNA packaging;5.71666150356956e-16!GO:0005746;mitochondrial respiratory chain;6.17800279727803e-16!GO:0009719;response to endogenous stimulus;9.2963402683473e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.49543847872244e-16!GO:0005761;mitochondrial ribosome;1.87222185748496e-15!GO:0000313;organellar ribosome;1.87222185748496e-15!GO:0006457;protein folding;2.07830490344975e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.85846435286212e-15!GO:0043285;biopolymer catabolic process;3.269846905161e-15!GO:0008134;transcription factor binding;3.60773822308394e-15!GO:0019941;modification-dependent protein catabolic process;3.60773822308394e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.60773822308394e-15!GO:0044257;cellular protein catabolic process;4.93499592610466e-15!GO:0030554;adenyl nucleotide binding;6.15392580313115e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.49877382966316e-15!GO:0044432;endoplasmic reticulum part;9.56780531897125e-15!GO:0048770;pigment granule;9.58566905025532e-15!GO:0042470;melanosome;9.58566905025532e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.04951397175266e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.14415604197805e-14!GO:0044248;cellular catabolic process;1.3790177542619e-14!GO:0022618;protein-RNA complex assembly;2.00954675982477e-14!GO:0005783;endoplasmic reticulum;2.38320749962608e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.75049937296731e-14!GO:0003954;NADH dehydrogenase activity;2.75049937296731e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.75049937296731e-14!GO:0009057;macromolecule catabolic process;3.34705709672694e-14!GO:0006732;coenzyme metabolic process;4.51497434104381e-14!GO:0006260;DNA replication;1.00616282461307e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0185761314603e-13!GO:0043412;biopolymer modification;1.20929616373425e-13!GO:0008135;translation factor activity, nucleic acid binding;1.82587325604335e-13!GO:0006333;chromatin assembly or disassembly;1.8808400104427e-13!GO:0031965;nuclear membrane;2.54768730988415e-13!GO:0042623;ATPase activity, coupled;2.75589592906818e-13!GO:0016887;ATPase activity;2.92079468629969e-13!GO:0000087;M phase of mitotic cell cycle;3.67885436365687e-13!GO:0051301;cell division;4.61405842687792e-13!GO:0005635;nuclear envelope;4.73339234187531e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.83403004819943e-13!GO:0000375;RNA splicing, via transesterification reactions;4.83403004819943e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.83403004819943e-13!GO:0007067;mitosis;4.87934917039281e-13!GO:0022403;cell cycle phase;6.0275837787179e-13!GO:0006605;protein targeting;7.6974584023723e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.18073685785501e-12!GO:0042773;ATP synthesis coupled electron transport;1.18073685785501e-12!GO:0051082;unfolded protein binding;1.35070258068476e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.83121264809356e-12!GO:0065004;protein-DNA complex assembly;2.49356116663658e-12!GO:0030163;protein catabolic process;2.60903639114585e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.29685921267479e-12!GO:0045271;respiratory chain complex I;3.29685921267479e-12!GO:0005747;mitochondrial respiratory chain complex I;3.29685921267479e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.8084468150487e-12!GO:0051726;regulation of cell cycle;6.43814464769808e-12!GO:0005789;endoplasmic reticulum membrane;7.80776250971498e-12!GO:0000785;chromatin;9.45529830428954e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.11778325337984e-11!GO:0006464;protein modification process;1.32205501548744e-11!GO:0042254;ribosome biogenesis and assembly;1.55919345172796e-11!GO:0000074;regulation of progression through cell cycle;1.77768786164721e-11!GO:0044453;nuclear membrane part;2.95203637946591e-11!GO:0005794;Golgi apparatus;3.16247996311807e-11!GO:0000279;M phase;3.61892142385746e-11!GO:0051188;cofactor biosynthetic process;3.66071343446146e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.028014872652e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.2130028236478e-11!GO:0006913;nucleocytoplasmic transport;4.46146440323832e-11!GO:0016604;nuclear body;9.30151900558097e-11!GO:0051169;nuclear transport;1.18592145610806e-10!GO:0006399;tRNA metabolic process;1.27204001268198e-10!GO:0048193;Golgi vesicle transport;1.43716396014906e-10!GO:0008639;small protein conjugating enzyme activity;1.99727230157273e-10!GO:0043687;post-translational protein modification;2.83965515298204e-10!GO:0019787;small conjugating protein ligase activity;3.86586816956402e-10!GO:0006334;nucleosome assembly;4.56822743196822e-10!GO:0004842;ubiquitin-protein ligase activity;5.24601710676775e-10!GO:0006366;transcription from RNA polymerase II promoter;6.950906628836e-10!GO:0031497;chromatin assembly;7.51890423353652e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.07501975015222e-10!GO:0006163;purine nucleotide metabolic process;8.79014330528715e-10!GO:0009259;ribonucleotide metabolic process;9.4335019989585e-10!GO:0016568;chromatin modification;1.0012008051801e-09!GO:0019829;cation-transporting ATPase activity;1.0680319631672e-09!GO:0003712;transcription cofactor activity;1.13131193801071e-09!GO:0005643;nuclear pore;1.91618942934865e-09!GO:0015986;ATP synthesis coupled proton transport;2.10026528353604e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.10026528353604e-09!GO:0004386;helicase activity;2.34367655647974e-09!GO:0016192;vesicle-mediated transport;2.53870687244092e-09!GO:0009108;coenzyme biosynthetic process;2.72226094653117e-09!GO:0003743;translation initiation factor activity;2.87927299889759e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.14111176091317e-09!GO:0006164;purine nucleotide biosynthetic process;4.32376133600729e-09!GO:0008026;ATP-dependent helicase activity;4.32376133600729e-09!GO:0009150;purine ribonucleotide metabolic process;4.9660424219517e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.40160752619865e-09!GO:0009141;nucleoside triphosphate metabolic process;5.66302452932805e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.12975419259966e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.12975419259966e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.62721554344648e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.62721554344648e-09!GO:0009260;ribonucleotide biosynthetic process;7.57523835785083e-09!GO:0016881;acid-amino acid ligase activity;8.00079638444845e-09!GO:0006461;protein complex assembly;9.29651541968446e-09!GO:0006446;regulation of translational initiation;9.5165813730105e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.92884877322753e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.92884877322753e-09!GO:0008565;protein transporter activity;1.0508788339146e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.05351622910656e-08!GO:0017038;protein import;1.49839000995509e-08!GO:0012501;programmed cell death;1.50269966391752e-08!GO:0006413;translational initiation;1.65571581396042e-08!GO:0050657;nucleic acid transport;1.76927995057665e-08!GO:0051236;establishment of RNA localization;1.76927995057665e-08!GO:0050658;RNA transport;1.76927995057665e-08!GO:0046034;ATP metabolic process;2.09685467171428e-08!GO:0065002;intracellular protein transport across a membrane;2.32305896880762e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.39457623258899e-08!GO:0006754;ATP biosynthetic process;2.39457623258899e-08!GO:0006753;nucleoside phosphate metabolic process;2.39457623258899e-08!GO:0006403;RNA localization;2.46362936095015e-08!GO:0006915;apoptosis;2.50917638296045e-08!GO:0032446;protein modification by small protein conjugation;2.93837424862639e-08!GO:0016779;nucleotidyltransferase activity;3.47413667581602e-08!GO:0016740;transferase activity;3.8727251501016e-08!GO:0009056;catabolic process;4.40694666708382e-08!GO:0016567;protein ubiquitination;4.43310553710001e-08!GO:0046930;pore complex;5.06057506808623e-08!GO:0006364;rRNA processing;5.32276944279757e-08!GO:0005793;ER-Golgi intermediate compartment;5.34786636323268e-08!GO:0003697;single-stranded DNA binding;5.46939107457023e-08!GO:0016072;rRNA metabolic process;7.14886637536742e-08!GO:0009060;aerobic respiration;7.59605430915852e-08!GO:0005768;endosome;8.82981507044515e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.04952474832883e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.04952474832883e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.04952474832883e-07!GO:0009117;nucleotide metabolic process;1.05471918757493e-07!GO:0007005;mitochondrion organization and biogenesis;1.1230132340019e-07!GO:0005667;transcription factor complex;1.14746631268045e-07!GO:0008219;cell death;1.51145319704177e-07!GO:0016265;death;1.51145319704177e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.51930995294304e-07!GO:0006261;DNA-dependent DNA replication;2.19177913210253e-07!GO:0016607;nuclear speck;2.20222203372364e-07!GO:0009055;electron carrier activity;2.62819370452892e-07!GO:0043038;amino acid activation;2.96816345017988e-07!GO:0006418;tRNA aminoacylation for protein translation;2.96816345017988e-07!GO:0043039;tRNA aminoacylation;2.96816345017988e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.08681430713298e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.37944877061579e-07!GO:0006752;group transfer coenzyme metabolic process;3.44769802546406e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.14033324280045e-07!GO:0016787;hydrolase activity;5.89511274166159e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.04498783999601e-07!GO:0045259;proton-transporting ATP synthase complex;1.04402262628656e-06!GO:0045333;cellular respiration;1.16856735638816e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.20771287414268e-06!GO:0044431;Golgi apparatus part;1.25736328157229e-06!GO:0051028;mRNA transport;1.2694059050881e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.46548490266029e-06!GO:0043623;cellular protein complex assembly;1.76691142952461e-06!GO:0031988;membrane-bound vesicle;1.8337916431611e-06!GO:0043566;structure-specific DNA binding;2.17812203392283e-06!GO:0000245;spliceosome assembly;2.59764972674535e-06!GO:0042802;identical protein binding;3.56379344966778e-06!GO:0015630;microtubule cytoskeleton;3.60293782088733e-06!GO:0050794;regulation of cellular process;3.93379473514844e-06!GO:0000151;ubiquitin ligase complex;4.32525222035904e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.94868599428013e-06!GO:0000786;nucleosome;5.26931851281663e-06!GO:0005762;mitochondrial large ribosomal subunit;5.60854889823932e-06!GO:0000315;organellar large ribosomal subunit;5.60854889823932e-06!GO:0006099;tricarboxylic acid cycle;5.646119479238e-06!GO:0046356;acetyl-CoA catabolic process;5.646119479238e-06!GO:0006793;phosphorus metabolic process;6.8809693301759e-06!GO:0006796;phosphate metabolic process;6.8809693301759e-06!GO:0005819;spindle;8.00847313235935e-06!GO:0051427;hormone receptor binding;9.26260873252144e-06!GO:0016563;transcription activator activity;1.01638250900706e-05!GO:0016564;transcription repressor activity;1.04698372732099e-05!GO:0006084;acetyl-CoA metabolic process;1.15633326479591e-05!GO:0051170;nuclear import;1.16558347832987e-05!GO:0048475;coated membrane;1.2805204695554e-05!GO:0030117;membrane coat;1.2805204695554e-05!GO:0008654;phospholipid biosynthetic process;1.41451140160967e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.57814285778576e-05!GO:0031982;vesicle;1.82987061838503e-05!GO:0004298;threonine endopeptidase activity;1.83623772648319e-05!GO:0031410;cytoplasmic vesicle;2.11114665220033e-05!GO:0030120;vesicle coat;2.11114665220033e-05!GO:0030662;coated vesicle membrane;2.11114665220033e-05!GO:0035257;nuclear hormone receptor binding;2.21318525453165e-05!GO:0000314;organellar small ribosomal subunit;2.3088066486786e-05!GO:0005763;mitochondrial small ribosomal subunit;2.3088066486786e-05!GO:0006606;protein import into nucleus;2.32543897255277e-05!GO:0003724;RNA helicase activity;2.65996073352064e-05!GO:0015992;proton transport;3.03952567095261e-05!GO:0051329;interphase of mitotic cell cycle;3.03952567095261e-05!GO:0003713;transcription coactivator activity;3.04521131651686e-05!GO:0031324;negative regulation of cellular metabolic process;3.33229360176667e-05!GO:0005773;vacuole;3.33517986026362e-05!GO:0051168;nuclear export;3.33882458524579e-05!GO:0006414;translational elongation;3.56182131660016e-05!GO:0006818;hydrogen transport;3.74598257204806e-05!GO:0051187;cofactor catabolic process;4.10030559184286e-05!GO:0016310;phosphorylation;4.62086698594801e-05!GO:0009165;nucleotide biosynthetic process;4.64331662168507e-05!GO:0045786;negative regulation of progression through cell cycle;5.16776528624396e-05!GO:0009109;coenzyme catabolic process;5.16776528624396e-05!GO:0019222;regulation of metabolic process;5.71236107879313e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.75531321496688e-05!GO:0044440;endosomal part;6.02838368290748e-05!GO:0010008;endosome membrane;6.02838368290748e-05!GO:0005657;replication fork;6.23125898158838e-05!GO:0008094;DNA-dependent ATPase activity;6.52943526728537e-05!GO:0003899;DNA-directed RNA polymerase activity;7.90888501456727e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.01005702177256e-05!GO:0005798;Golgi-associated vesicle;8.47474706447431e-05!GO:0051325;interphase;8.54781792699315e-05!GO:0043067;regulation of programmed cell death;8.68725290305069e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.26986011131226e-05!GO:0005813;centrosome;0.000100326973698501!GO:0007051;spindle organization and biogenesis;0.000106393801841194!GO:0042981;regulation of apoptosis;0.00010776264889138!GO:0000139;Golgi membrane;0.000109070480569105!GO:0016741;transferase activity, transferring one-carbon groups;0.000128051312585218!GO:0000775;chromosome, pericentric region;0.000141943121433453!GO:0008168;methyltransferase activity;0.000145492878272733!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000146916293216175!GO:0015399;primary active transmembrane transporter activity;0.000146916293216175!GO:0005770;late endosome;0.000149435844715894!GO:0048471;perinuclear region of cytoplasm;0.00015520452854741!GO:0008033;tRNA processing;0.000156237329571304!GO:0051246;regulation of protein metabolic process;0.000158998861052509!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00016434610078439!GO:0003714;transcription corepressor activity;0.000166778209842143!GO:0005815;microtubule organizing center;0.000192675961953173!GO:0009892;negative regulation of metabolic process;0.00019731029715245!GO:0000323;lytic vacuole;0.000205844203213767!GO:0005764;lysosome;0.000205844203213767!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000216372320226311!GO:0005769;early endosome;0.000221858554499572!GO:0000075;cell cycle checkpoint;0.000224174434972733!GO:0008186;RNA-dependent ATPase activity;0.000275002718681216!GO:0003684;damaged DNA binding;0.000282307808304273!GO:0046474;glycerophospholipid biosynthetic process;0.000291402405224637!GO:0003924;GTPase activity;0.000296446293370694!GO:0006401;RNA catabolic process;0.000300340515858669!GO:0003682;chromatin binding;0.000302381140538711!GO:0006613;cotranslational protein targeting to membrane;0.000316877892971478!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000316877892971478!GO:0006916;anti-apoptosis;0.000343527942378548!GO:0043069;negative regulation of programmed cell death;0.000348390108150644!GO:0048523;negative regulation of cellular process;0.000352792591741893!GO:0016491;oxidoreductase activity;0.000385853965037066!GO:0006091;generation of precursor metabolites and energy;0.000388517625732079!GO:0030867;rough endoplasmic reticulum membrane;0.000392069891769872!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000409308126799609!GO:0006402;mRNA catabolic process;0.000452443408343701!GO:0006839;mitochondrial transport;0.000452443408343701!GO:0043681;protein import into mitochondrion;0.00049371831958932!GO:0031252;leading edge;0.000500576242594094!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000521340039039913!GO:0046489;phosphoinositide biosynthetic process;0.000629063152158352!GO:0043284;biopolymer biosynthetic process;0.000647214718516936!GO:0033116;ER-Golgi intermediate compartment membrane;0.000701637431151234!GO:0016853;isomerase activity;0.000727947078799902!GO:0004004;ATP-dependent RNA helicase activity;0.000727947078799902!GO:0043066;negative regulation of apoptosis;0.000762001883632664!GO:0005048;signal sequence binding;0.000762001883632664!GO:0003729;mRNA binding;0.000766346952101605!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000786828393372755!GO:0043492;ATPase activity, coupled to movement of substances;0.000798817035840298!GO:0051789;response to protein stimulus;0.000847941820253067!GO:0006986;response to unfolded protein;0.000847941820253067!GO:0005788;endoplasmic reticulum lumen;0.000858047852245463!GO:0003746;translation elongation factor activity;0.000880838030274013!GO:0051087;chaperone binding;0.00092307504455897!GO:0046983;protein dimerization activity;0.000926514950537892!GO:0016363;nuclear matrix;0.000926514950537892!GO:0032508;DNA duplex unwinding;0.000950254400118729!GO:0032392;DNA geometric change;0.000950254400118729!GO:0051920;peroxiredoxin activity;0.000967838168725873!GO:0022890;inorganic cation transmembrane transporter activity;0.000976040274664388!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000979100551201262!GO:0004518;nuclease activity;0.000980021818218162!GO:0005684;U2-dependent spliceosome;0.000982404166125908!GO:0016481;negative regulation of transcription;0.00101509931358941!GO:0006284;base-excision repair;0.00101953571736306!GO:0016126;sterol biosynthetic process;0.00104615001401524!GO:0030176;integral to endoplasmic reticulum membrane;0.00105047027432202!GO:0005525;GTP binding;0.00105170320281655!GO:0005885;Arp2/3 protein complex;0.00107297199252735!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00108489101748428!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011632164968838!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011632164968838!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011632164968838!GO:0043021;ribonucleoprotein binding;0.00124242691659067!GO:0015980;energy derivation by oxidation of organic compounds;0.00124605969246108!GO:0006650;glycerophospholipid metabolic process;0.00136481522981325!GO:0006383;transcription from RNA polymerase III promoter;0.0013733386687046!GO:0003678;DNA helicase activity;0.00147609121134086!GO:0051252;regulation of RNA metabolic process;0.00154162382801221!GO:0006268;DNA unwinding during replication;0.00155213935844849!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0015759955477238!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0015759955477238!GO:0019899;enzyme binding;0.00159842071382622!GO:0046483;heterocycle metabolic process;0.00161946589011376!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00164348898841466!GO:0050789;regulation of biological process;0.00178124487787574!GO:0007264;small GTPase mediated signal transduction;0.00188136437132132!GO:0046467;membrane lipid biosynthetic process;0.00188820952497319!GO:0048487;beta-tubulin binding;0.00188820952497319!GO:0006405;RNA export from nucleus;0.00197045990098773!GO:0006350;transcription;0.00197328386567321!GO:0006695;cholesterol biosynthetic process;0.0019940245562977!GO:0006270;DNA replication initiation;0.00211118020362455!GO:0044262;cellular carbohydrate metabolic process;0.00214568144708076!GO:0031323;regulation of cellular metabolic process;0.00215217939603947!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00231831078108732!GO:0015002;heme-copper terminal oxidase activity;0.00231831078108732!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00231831078108732!GO:0004129;cytochrome-c oxidase activity;0.00231831078108732!GO:0035258;steroid hormone receptor binding;0.00233253276214993!GO:0001558;regulation of cell growth;0.0023782183401506!GO:0005905;coated pit;0.00246418528207306!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00252931858525119!GO:0030384;phosphoinositide metabolic process;0.00254575461607982!GO:0006506;GPI anchor biosynthetic process;0.00269315308383857!GO:0006672;ceramide metabolic process;0.0027356455833156!GO:0006302;double-strand break repair;0.00277895954555632!GO:0005774;vacuolar membrane;0.00278882447482877!GO:0000059;protein import into nucleus, docking;0.00289107307040421!GO:0003711;transcription elongation regulator activity;0.00295603194666928!GO:0048519;negative regulation of biological process;0.00295996183540932!GO:0046519;sphingoid metabolic process;0.00307057825713447!GO:0006733;oxidoreduction coenzyme metabolic process;0.00314029213725922!GO:0045454;cell redox homeostasis;0.00314029213725922!GO:0043488;regulation of mRNA stability;0.00316186009761119!GO:0043487;regulation of RNA stability;0.00316186009761119!GO:0004576;oligosaccharyl transferase activity;0.00329080022894317!GO:0008287;protein serine/threonine phosphatase complex;0.00329080022894317!GO:0008250;oligosaccharyl transferase complex;0.00332469655200112!GO:0030880;RNA polymerase complex;0.00349574336749593!GO:0007006;mitochondrial membrane organization and biogenesis;0.0037653204694782!GO:0031968;organelle outer membrane;0.00381779714729128!GO:0005637;nuclear inner membrane;0.00382667292115965!GO:0006730;one-carbon compound metabolic process;0.0039046637847305!GO:0006352;transcription initiation;0.00404459396137105!GO:0006611;protein export from nucleus;0.0040897113176644!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00411303421991762!GO:0006612;protein targeting to membrane;0.00431558261406638!GO:0006505;GPI anchor metabolic process;0.0045152471153357!GO:0019867;outer membrane;0.00453727783369047!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00466866566193846!GO:0065009;regulation of a molecular function;0.00502915485534946!GO:0004527;exonuclease activity;0.00502915485534946!GO:0008610;lipid biosynthetic process;0.00504155888819764!GO:0030137;COPI-coated vesicle;0.0052760889160682!GO:0000123;histone acetyltransferase complex;0.0053458539383928!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00559701420436231!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00614322574732453!GO:0043414;biopolymer methylation;0.0063292117149954!GO:0031124;mRNA 3'-end processing;0.00643765563060585!GO:0003887;DNA-directed DNA polymerase activity;0.00648462372918516!GO:0005741;mitochondrial outer membrane;0.00655077051417976!GO:0044437;vacuolar part;0.00661589252622119!GO:0008022;protein C-terminus binding;0.00669985017231399!GO:0000030;mannosyltransferase activity;0.00675090369464099!GO:0008361;regulation of cell size;0.00678412644808192!GO:0006767;water-soluble vitamin metabolic process;0.00680711685829681!GO:0006082;organic acid metabolic process;0.00689948206785121!GO:0006626;protein targeting to mitochondrion;0.00689948206785121!GO:0032561;guanyl ribonucleotide binding;0.00689948206785121!GO:0019001;guanyl nucleotide binding;0.00689948206785121!GO:0006891;intra-Golgi vesicle-mediated transport;0.00719030656236588!GO:0007088;regulation of mitosis;0.00719030656236588!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00727112057596134!GO:0000428;DNA-directed RNA polymerase complex;0.00727112057596134!GO:0006769;nicotinamide metabolic process;0.00727112057596134!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00730182534595895!GO:0044452;nucleolar part;0.00730896964283785!GO:0031072;heat shock protein binding;0.00752911173315598!GO:0030663;COPI coated vesicle membrane;0.00752911173315598!GO:0030126;COPI vesicle coat;0.00752911173315598!GO:0043189;H4/H2A histone acetyltransferase complex;0.00755327241493545!GO:0043596;nuclear replication fork;0.00759912890754595!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00793482113033463!GO:0030133;transport vesicle;0.00815577898739252!GO:0019752;carboxylic acid metabolic process;0.0082680233889758!GO:0006740;NADPH regeneration;0.00828633776580158!GO:0006098;pentose-phosphate shunt;0.00828633776580158!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00829835402058356!GO:0032259;methylation;0.0084106039811877!GO:0005869;dynactin complex;0.00847067929113159!GO:0016049;cell growth;0.00863369885987649!GO:0030118;clathrin coat;0.00875772911811729!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00879900026829195!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00879900026829195!GO:0008139;nuclear localization sequence binding;0.0088972084313541!GO:0006595;polyamine metabolic process;0.00902544248719947!GO:0008276;protein methyltransferase activity;0.00907569153590329!GO:0016859;cis-trans isomerase activity;0.00946214133481752!GO:0016272;prefoldin complex;0.00951860793616066!GO:0019318;hexose metabolic process;0.00977804044742072!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00989060715307927!GO:0000209;protein polyubiquitination;0.0104972499263854!GO:0005669;transcription factor TFIID complex;0.0107670690912922!GO:0005996;monosaccharide metabolic process;0.0110316647726635!GO:0008632;apoptotic program;0.0112325608122259!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0117266472495917!GO:0006338;chromatin remodeling;0.0117629693702331!GO:0000049;tRNA binding;0.0120371234402835!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.01204793076895!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.012370841427812!GO:0008601;protein phosphatase type 2A regulator activity;0.0124109342254334!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0124932165266561!GO:0016044;membrane organization and biogenesis;0.0125167703206566!GO:0003690;double-stranded DNA binding;0.0125912324640271!GO:0007040;lysosome organization and biogenesis;0.012707206724323!GO:0004532;exoribonuclease activity;0.0128619487010594!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0128619487010594!GO:0004674;protein serine/threonine kinase activity;0.0130761174348359!GO:0006289;nucleotide-excision repair;0.0133538376582174!GO:0030659;cytoplasmic vesicle membrane;0.0133919516000805!GO:0010468;regulation of gene expression;0.0134195619095486!GO:0040029;regulation of gene expression, epigenetic;0.0136948743504659!GO:0042770;DNA damage response, signal transduction;0.0137501255234259!GO:0005874;microtubule;0.0137763382031398!GO:0019843;rRNA binding;0.0139036897372219!GO:0016301;kinase activity;0.0142834025790111!GO:0005791;rough endoplasmic reticulum;0.0142834025790111!GO:0000082;G1/S transition of mitotic cell cycle;0.0144173884794137!GO:0004003;ATP-dependent DNA helicase activity;0.0149885027092639!GO:0004722;protein serine/threonine phosphatase activity;0.0149902723707429!GO:0008637;apoptotic mitochondrial changes;0.0150590707546144!GO:0046966;thyroid hormone receptor binding;0.0150590707546144!GO:0047485;protein N-terminus binding;0.0150735481897332!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.015081988332418!GO:0018196;peptidyl-asparagine modification;0.0154735947468404!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0154735947468404!GO:0007052;mitotic spindle organization and biogenesis;0.0155979683061188!GO:0007265;Ras protein signal transduction;0.0158153112917976!GO:0005832;chaperonin-containing T-complex;0.0160944562144947!GO:0040008;regulation of growth;0.0162876330209281!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0163413332136639!GO:0019362;pyridine nucleotide metabolic process;0.0166608199224571!GO:0030658;transport vesicle membrane;0.0169268678625695!GO:0015631;tubulin binding;0.0170805552322438!GO:0007021;tubulin folding;0.0171173961383005!GO:0031123;RNA 3'-end processing;0.0171311288687291!GO:0006778;porphyrin metabolic process;0.017171616260246!GO:0033013;tetrapyrrole metabolic process;0.017171616260246!GO:0045792;negative regulation of cell size;0.0173125783337544!GO:0031902;late endosome membrane;0.0176103886259981!GO:0000086;G2/M transition of mitotic cell cycle;0.017825134211209!GO:0007050;cell cycle arrest;0.0178287774945977!GO:0035267;NuA4 histone acetyltransferase complex;0.0184002739091556!GO:0050662;coenzyme binding;0.0188900769860248!GO:0044433;cytoplasmic vesicle part;0.0189874393681753!GO:0006509;membrane protein ectodomain proteolysis;0.0194956663286125!GO:0033619;membrane protein proteolysis;0.0194956663286125!GO:0005765;lysosomal membrane;0.019561475988882!GO:0009112;nucleobase metabolic process;0.0196237039496628!GO:0016251;general RNA polymerase II transcription factor activity;0.0199369107116304!GO:0009303;rRNA transcription;0.0201864538483319!GO:0030132;clathrin coat of coated pit;0.0205849383321259!GO:0007033;vacuole organization and biogenesis;0.0211430624935072!GO:0030518;steroid hormone receptor signaling pathway;0.02164139134284!GO:0030308;negative regulation of cell growth;0.0217907029077189!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0219843415476324!GO:0006497;protein amino acid lipidation;0.0222659621858861!GO:0030119;AP-type membrane coat adaptor complex;0.0224293973152167!GO:0016791;phosphoric monoester hydrolase activity;0.0228700502900921!GO:0030131;clathrin adaptor complex;0.0229585636981602!GO:0045941;positive regulation of transcription;0.0229585636981602!GO:0006378;mRNA polyadenylation;0.0229585636981602!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0230218909836292!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230506322995503!GO:0000792;heterochromatin;0.0234962482400969!GO:0008538;proteasome activator activity;0.0236274805839417!GO:0000096;sulfur amino acid metabolic process;0.0236732305717831!GO:0000776;kinetochore;0.0237094508909532!GO:0006354;RNA elongation;0.0240813149337417!GO:0032774;RNA biosynthetic process;0.0248346327644662!GO:0008286;insulin receptor signaling pathway;0.0248696490237931!GO:0042987;amyloid precursor protein catabolic process;0.0249472531178716!GO:0051052;regulation of DNA metabolic process;0.0249548748651529!GO:0004860;protein kinase inhibitor activity;0.0256045332110519!GO:0030145;manganese ion binding;0.0259305907686486!GO:0050178;phenylpyruvate tautomerase activity;0.0259399789294712!GO:0006779;porphyrin biosynthetic process;0.0259399789294712!GO:0033014;tetrapyrrole biosynthetic process;0.0259399789294712!GO:0006351;transcription, DNA-dependent;0.0259725310254304!GO:0012506;vesicle membrane;0.026711318766299!GO:0001836;release of cytochrome c from mitochondria;0.0268032033558458!GO:0006144;purine base metabolic process;0.0271475596103466!GO:0030660;Golgi-associated vesicle membrane;0.027546025637862!GO:0006310;DNA recombination;0.0276919701711175!GO:0000163;protein phosphatase type 1 activity;0.0283651669939908!GO:0006066;alcohol metabolic process;0.0290687804572439!GO:0043022;ribosome binding;0.0291179448935842!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0294255329271683!GO:0009304;tRNA transcription;0.0296297307851191!GO:0046822;regulation of nucleocytoplasmic transport;0.0300485874867343!GO:0030521;androgen receptor signaling pathway;0.0302173251758666!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0302665231579522!GO:0005876;spindle microtubule;0.0306232919782615!GO:0006643;membrane lipid metabolic process;0.0307590862767238!GO:0007059;chromosome segregation;0.0312422085450974!GO:0000152;nuclear ubiquitin ligase complex;0.0312711685695091!GO:0048500;signal recognition particle;0.0313462839538442!GO:0051287;NAD binding;0.0321281922531533!GO:0017166;vinculin binding;0.0323993250092579!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0324343490493454!GO:0006275;regulation of DNA replication;0.0324356780394239!GO:0031371;ubiquitin conjugating enzyme complex;0.0325177314460041!GO:0005784;translocon complex;0.0325245069454023!GO:0043491;protein kinase B signaling cascade;0.0328127932437668!GO:0000287;magnesium ion binding;0.0328529948012102!GO:0016584;nucleosome positioning;0.0335655860828282!GO:0045926;negative regulation of growth;0.0335655860828282!GO:0006376;mRNA splice site selection;0.0335655860828282!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0335655860828282!GO:0046426;negative regulation of JAK-STAT cascade;0.0343675107575274!GO:0043601;nuclear replisome;0.0346175860231651!GO:0030894;replisome;0.0346175860231651!GO:0045045;secretory pathway;0.0353604919603509!GO:0031570;DNA integrity checkpoint;0.0354656452078465!GO:0008180;signalosome;0.0355957992413454!GO:0006516;glycoprotein catabolic process;0.0357552057268374!GO:0000118;histone deacetylase complex;0.0357788380706675!GO:0005680;anaphase-promoting complex;0.0359666800949574!GO:0009116;nucleoside metabolic process;0.0360181248953571!GO:0048037;cofactor binding;0.037350193980985!GO:0016311;dephosphorylation;0.0374740960377049!GO:0009451;RNA modification;0.0375689180209188!GO:0008312;7S RNA binding;0.0380827002820344!GO:0030911;TPR domain binding;0.0385670012153773!GO:0006220;pyrimidine nucleotide metabolic process;0.038617985829625!GO:0007346;regulation of progression through mitotic cell cycle;0.0389773962112864!GO:0045892;negative regulation of transcription, DNA-dependent;0.0389773962112864!GO:0007093;mitotic cell cycle checkpoint;0.0391704043570099!GO:0005777;peroxisome;0.0392226498519266!GO:0042579;microbody;0.0392226498519266!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0398049656199017!GO:0046982;protein heterodimerization activity;0.0401492879167644!GO:0000159;protein phosphatase type 2A complex;0.0404022658500936!GO:0006739;NADP metabolic process;0.0404022658500936!GO:0006644;phospholipid metabolic process;0.0418861374153599!GO:0031628;opioid receptor binding;0.0418861374153599!GO:0031852;mu-type opioid receptor binding;0.0418861374153599!GO:0007017;microtubule-based process;0.0418861374153599!GO:0004549;tRNA-specific ribonuclease activity;0.0424520797153901!GO:0004448;isocitrate dehydrogenase activity;0.0431627948636145!GO:0000781;chromosome, telomeric region;0.0441209805909824!GO:0032039;integrator complex;0.0445953829475041!GO:0050681;androgen receptor binding;0.0446554100166196!GO:0005665;DNA-directed RNA polymerase II, core complex;0.044758519892667!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.044758519892667!GO:0000178;exosome (RNase complex);0.0454533034093821!GO:0006368;RNA elongation from RNA polymerase II promoter;0.045828290944213!GO:0000228;nuclear chromosome;0.0460280256402674!GO:0030149;sphingolipid catabolic process;0.0460280256402674!GO:0000175;3'-5'-exoribonuclease activity;0.0465008450061998!GO:0006520;amino acid metabolic process;0.0467694012779581!GO:0030027;lamellipodium;0.0468641228856413!GO:0030125;clathrin vesicle coat;0.0468940233455026!GO:0030665;clathrin coated vesicle membrane;0.0468940233455026!GO:0042158;lipoprotein biosynthetic process;0.0489437659232078!GO:0042054;histone methyltransferase activity;0.0493562292303451!GO:0042791;5S class rRNA transcription;0.049824386327652!GO:0000127;transcription factor TFIIIC complex;0.049824386327652!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.049824386327652
|sample_id=13097
|sample_id=13097
|sample_note=
|sample_note=
Line 75: Line 103:
|sample_strain=
|sample_strain=
|sample_tissue=breast
|sample_tissue=breast
|time=00hr00min
|timecourse=MCF7_response_to_EGF,MCF7_response_to_HRG
|top_motifs=PBX1:2.21119871913;NFY{A,B,C}:2.15443189165;MYOD1:1.89656857437;SNAI1..3:1.8668948026;ZEB1:1.83614992585;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.60138800563;POU2F1..3:1.59957254667;SP1:1.40006046345;ARID5B:1.32889924038;FOX{F1,F2,J1}:1.27384771982;XCPE1{core}:1.20493655574;ELK1,4_GABP{A,B1}:1.19623254422;ONECUT1,2:1.18398091035;GFI1:1.14060348306;LMO2:1.07820157896;bHLH_family:1.05452075556;ESRRA:1.01499302402;NRF1:0.979012047786;STAT1,3:0.970942244004;LHX3,4:0.897823704534;VSX1,2:0.866079530803;SOX{8,9,10}:0.835259954056;IKZF1:0.720437321949;YY1:0.720353393957;E2F1..5:0.705723151678;TFDP1:0.659531563914;FOXQ1:0.658197538792;MYB:0.648500828487;HOXA9_MEIS1:0.630245475641;EGR1..3:0.625874444155;PPARG:0.615594505249;TFAP2{A,C}:0.563499461354;PAX5:0.524787010128;PAX1,9:0.518941276107;NANOG:0.510040877755;FOXL1:0.498960056429;FOX{I1,J2}:0.498162913168;ESR1:0.483885978072;MED-1{core}:0.43616101318;NFE2L1:0.429822121991;BREu{core}:0.390375342173;TP53:0.385376647701;POU1F1:0.325370218857;OCT4_SOX2{dimer}:0.291320173463;FOXN1:0.28659471442;ZNF143:0.254753309968;TBP:0.24735022282;GTF2A1,2:0.239754042808;LEF1_TCF7_TCF7L1,2:0.23464993802;PITX1..3:0.220364580169;TEAD1:0.219479985073;ZNF423:0.213813824334;ZNF148:0.203926427389;CDX1,2,4:0.198303912911;TFAP2B:0.179176686873;SREBF1,2:0.172156855993;STAT5{A,B}:0.165595214091;REST:0.160155675572;NR5A1,2:0.156207279617;TOPORS:0.140272120719;RFX1:0.13970020328;AR:0.130472349165;RORA:0.122449127967;RBPJ:0.115206000882;TFCP2:0.113629509164;RXRA_VDR{dimer}:0.0940997918299;HIF1A:0.0888104202808;HAND1,2:0.0777008097367;HNF1A:0.0730294085441;HES1:0.0727338978496;HOX{A4,D4}:0.0275478361255;NKX6-1,2:0.0173935092896;FOS_FOS{B,L1}_JUN{B,D}:0.0157684550697;HOX{A6,A7,B6,B7}:0.0108471032422;FOXA2:0.00868241106041;RFX2..5_RFXANK_RFXAP:-0.00726507859967;FOX{D1,D2}:-0.0172734585338;HNF4A_NR2F1,2:-0.0175355488837;EBF1:-0.042410483615;ZBTB6:-0.0443143747614;HIC1:-0.0751706071416;ATF5_CREB3:-0.09342938975;PAX2:-0.122256724378;HMX1:-0.132726276012;NFE2:-0.141316694257;RREB1:-0.160364009054;MTF1:-0.167206573858;HOX{A5,B5}:-0.169988722248;UFEwm:-0.172177233641;ATF2:-0.178497260024;TBX4,5:-0.185342605446;ALX1:-0.200874495778;TLX2:-0.201384491006;EN1,2:-0.217213769503;BACH2:-0.247642074814;ZNF384:-0.254716792522;FOSL2:-0.259834886209;TLX1..3_NFIC{dimer}:-0.26562624012;GATA6:-0.267698012525;ZFP161:-0.279638458113;HSF1,2:-0.312845692888;ATF6:-0.333927589325;CREB1:-0.342626921702;ELF1,2,4:-0.364240227208;SOX5:-0.365691699351;ADNP_IRX_SIX_ZHX:-0.372954353044;POU3F1..4:-0.376877260154;NFE2L2:-0.376918978073;ZIC1..3:-0.409805848326;CDC5L:-0.416286790201;GTF2I:-0.433633883745;JUN:-0.441918454035;TFAP4:-0.442201481456;MAZ:-0.450692436014;FOXM1:-0.451644631219;CUX2:-0.465564907641;IKZF2:-0.468809520907;DBP:-0.470211766512;MEF2{A,B,C,D}:-0.471018207812;GZF1:-0.48278700671;NFIL3:-0.505464650548;SPIB:-0.537079080169;NFKB1_REL_RELA:-0.538815800129;NKX2-2,8:-0.557205295106;EP300:-0.572745245273;NKX2-3_NKX2-5:-0.604781484561;FOXD3:-0.605127807865;SOX2:-0.607252381672;TAL1_TCF{3,4,12}:-0.624167252146;NR6A1:-0.626296931488;ALX4:-0.631292994951;MAFB:-0.633521939093;NR1H4:-0.644396314868;PAX6:-0.654698421383;ATF4:-0.658869035893;RUNX1..3:-0.665672387823;NANOG{mouse}:-0.690375162858;HLF:-0.70858867639;FOXP1:-0.713285975442;CRX:-0.735434892128;PRRX1,2:-0.740878221543;PATZ1:-0.751189810099;SPI1:-0.765531891201;IRF7:-0.770588096034;ETS1,2:-0.832097375455;AHR_ARNT_ARNT2:-0.841887947004;MYFfamily:-0.851701633574;SRF:-0.866200878824;POU6F1:-0.888950350313;NKX3-2:-0.892174842609;EVI1:-0.905579190179;SOX17:-0.951308672182;POU5F1:-0.954826807634;NHLH1,2:-0.956487815391;CEBPA,B_DDIT3:-0.966490321542;GFI1B:-0.9852346573;IRF1,2:-1.00668549988;MTE{core}:-1.00752640415;TGIF1:-1.01366577883;ZBTB16:-1.04019216397;XBP1:-1.04670307416;MZF1:-1.0811913966;NFIX:-1.08997731908;STAT2,4,6:-1.0970011131;PAX8:-1.10342986125;FOXO1,3,4:-1.11862422947;GLI1..3:-1.16050196587;ZNF238:-1.16172956593;DMAP1_NCOR{1,2}_SMARC:-1.19211608843;BPTF:-1.20223736743;NR3C1:-1.20491450975;PAX3,7:-1.23991658797;KLF4:-1.28746268047;MYBL2:-1.31685456794;PAX4:-1.32101503169;NFATC1..3:-1.33465541845;PDX1:-1.37685365748;RXR{A,B,G}:-1.43383422327;AIRE:-1.45334082309;NKX3-1:-1.50975095081;HBP1_HMGB_SSRP1_UBTF:-1.51948453037;T:-1.54888089048;TEF:-1.57306934114;GATA4:-1.60084881889;SMAD1..7,9:-1.60172697006;GCM1,2:-1.63723633645;SPZ1:-1.67261638085;FOXP3:-1.70780683896;PRDM1:-1.88682540727;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.90616239609;NKX2-1,4:-1.99404470512;HMGA1,2:-2.25937327929
|top_motifs=PBX1:2.21119871913;NFY{A,B,C}:2.15443189165;MYOD1:1.89656857437;SNAI1..3:1.8668948026;ZEB1:1.83614992585;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.60138800563;POU2F1..3:1.59957254667;SP1:1.40006046345;ARID5B:1.32889924038;FOX{F1,F2,J1}:1.27384771982;XCPE1{core}:1.20493655574;ELK1,4_GABP{A,B1}:1.19623254422;ONECUT1,2:1.18398091035;GFI1:1.14060348306;LMO2:1.07820157896;bHLH_family:1.05452075556;ESRRA:1.01499302402;NRF1:0.979012047786;STAT1,3:0.970942244004;LHX3,4:0.897823704534;VSX1,2:0.866079530803;SOX{8,9,10}:0.835259954056;IKZF1:0.720437321949;YY1:0.720353393957;E2F1..5:0.705723151678;TFDP1:0.659531563914;FOXQ1:0.658197538792;MYB:0.648500828487;HOXA9_MEIS1:0.630245475641;EGR1..3:0.625874444155;PPARG:0.615594505249;TFAP2{A,C}:0.563499461354;PAX5:0.524787010128;PAX1,9:0.518941276107;NANOG:0.510040877755;FOXL1:0.498960056429;FOX{I1,J2}:0.498162913168;ESR1:0.483885978072;MED-1{core}:0.43616101318;NFE2L1:0.429822121991;BREu{core}:0.390375342173;TP53:0.385376647701;POU1F1:0.325370218857;OCT4_SOX2{dimer}:0.291320173463;FOXN1:0.28659471442;ZNF143:0.254753309968;TBP:0.24735022282;GTF2A1,2:0.239754042808;LEF1_TCF7_TCF7L1,2:0.23464993802;PITX1..3:0.220364580169;TEAD1:0.219479985073;ZNF423:0.213813824334;ZNF148:0.203926427389;CDX1,2,4:0.198303912911;TFAP2B:0.179176686873;SREBF1,2:0.172156855993;STAT5{A,B}:0.165595214091;REST:0.160155675572;NR5A1,2:0.156207279617;TOPORS:0.140272120719;RFX1:0.13970020328;AR:0.130472349165;RORA:0.122449127967;RBPJ:0.115206000882;TFCP2:0.113629509164;RXRA_VDR{dimer}:0.0940997918299;HIF1A:0.0888104202808;HAND1,2:0.0777008097367;HNF1A:0.0730294085441;HES1:0.0727338978496;HOX{A4,D4}:0.0275478361255;NKX6-1,2:0.0173935092896;FOS_FOS{B,L1}_JUN{B,D}:0.0157684550697;HOX{A6,A7,B6,B7}:0.0108471032422;FOXA2:0.00868241106041;RFX2..5_RFXANK_RFXAP:-0.00726507859967;FOX{D1,D2}:-0.0172734585338;HNF4A_NR2F1,2:-0.0175355488837;EBF1:-0.042410483615;ZBTB6:-0.0443143747614;HIC1:-0.0751706071416;ATF5_CREB3:-0.09342938975;PAX2:-0.122256724378;HMX1:-0.132726276012;NFE2:-0.141316694257;RREB1:-0.160364009054;MTF1:-0.167206573858;HOX{A5,B5}:-0.169988722248;UFEwm:-0.172177233641;ATF2:-0.178497260024;TBX4,5:-0.185342605446;ALX1:-0.200874495778;TLX2:-0.201384491006;EN1,2:-0.217213769503;BACH2:-0.247642074814;ZNF384:-0.254716792522;FOSL2:-0.259834886209;TLX1..3_NFIC{dimer}:-0.26562624012;GATA6:-0.267698012525;ZFP161:-0.279638458113;HSF1,2:-0.312845692888;ATF6:-0.333927589325;CREB1:-0.342626921702;ELF1,2,4:-0.364240227208;SOX5:-0.365691699351;ADNP_IRX_SIX_ZHX:-0.372954353044;POU3F1..4:-0.376877260154;NFE2L2:-0.376918978073;ZIC1..3:-0.409805848326;CDC5L:-0.416286790201;GTF2I:-0.433633883745;JUN:-0.441918454035;TFAP4:-0.442201481456;MAZ:-0.450692436014;FOXM1:-0.451644631219;CUX2:-0.465564907641;IKZF2:-0.468809520907;DBP:-0.470211766512;MEF2{A,B,C,D}:-0.471018207812;GZF1:-0.48278700671;NFIL3:-0.505464650548;SPIB:-0.537079080169;NFKB1_REL_RELA:-0.538815800129;NKX2-2,8:-0.557205295106;EP300:-0.572745245273;NKX2-3_NKX2-5:-0.604781484561;FOXD3:-0.605127807865;SOX2:-0.607252381672;TAL1_TCF{3,4,12}:-0.624167252146;NR6A1:-0.626296931488;ALX4:-0.631292994951;MAFB:-0.633521939093;NR1H4:-0.644396314868;PAX6:-0.654698421383;ATF4:-0.658869035893;RUNX1..3:-0.665672387823;NANOG{mouse}:-0.690375162858;HLF:-0.70858867639;FOXP1:-0.713285975442;CRX:-0.735434892128;PRRX1,2:-0.740878221543;PATZ1:-0.751189810099;SPI1:-0.765531891201;IRF7:-0.770588096034;ETS1,2:-0.832097375455;AHR_ARNT_ARNT2:-0.841887947004;MYFfamily:-0.851701633574;SRF:-0.866200878824;POU6F1:-0.888950350313;NKX3-2:-0.892174842609;EVI1:-0.905579190179;SOX17:-0.951308672182;POU5F1:-0.954826807634;NHLH1,2:-0.956487815391;CEBPA,B_DDIT3:-0.966490321542;GFI1B:-0.9852346573;IRF1,2:-1.00668549988;MTE{core}:-1.00752640415;TGIF1:-1.01366577883;ZBTB16:-1.04019216397;XBP1:-1.04670307416;MZF1:-1.0811913966;NFIX:-1.08997731908;STAT2,4,6:-1.0970011131;PAX8:-1.10342986125;FOXO1,3,4:-1.11862422947;GLI1..3:-1.16050196587;ZNF238:-1.16172956593;DMAP1_NCOR{1,2}_SMARC:-1.19211608843;BPTF:-1.20223736743;NR3C1:-1.20491450975;PAX3,7:-1.23991658797;KLF4:-1.28746268047;MYBL2:-1.31685456794;PAX4:-1.32101503169;NFATC1..3:-1.33465541845;PDX1:-1.37685365748;RXR{A,B,G}:-1.43383422327;AIRE:-1.45334082309;NKX3-1:-1.50975095081;HBP1_HMGB_SSRP1_UBTF:-1.51948453037;T:-1.54888089048;TEF:-1.57306934114;GATA4:-1.60084881889;SMAD1..7,9:-1.60172697006;GCM1,2:-1.63723633645;SPZ1:-1.67261638085;FOXP3:-1.70780683896;PRDM1:-1.88682540727;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.90616239609;NKX2-1,4:-1.99404470512;HMGA1,2:-2.25937327929
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13097-140D1;search_select_hide=table117:FF:13097-140D1
}}
}}

Latest revision as of 18:51, 4 June 2020

Name:MCF7 breast cancer cell line response to EGF1
Species:Human (Homo sapiens)
Library ID:CNhs12475
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stageNA
sexfemale
ageNA
cell typemammary gland epithelial cell
cell lineMCF7
companyNA
collaborationMariko Okada Hatakeyama (RIKEN RCAI)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)Repurified by minelute

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005523
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12475 CAGE DRX008592 DRR009464
Accession ID Hg19

Library idBAMCTSS
CNhs12475 DRZ000889 DRZ002274
Accession ID Hg38

Library idBAMCTSS
CNhs12475 DRZ012239 DRZ013624
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005523
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10063.ACTTGA sRNA-Seq DRX037287 DRR041653
Accession ID Hg19

Library idBAMCTSS
SRhi10063.ACTTGA DRZ007295


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0445
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.249
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.097
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0874
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar1.286
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.465
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.64
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.253
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.105
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.952
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.253
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0.695
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.253
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12475

Jaspar motifP-value
MA0002.20.0474
MA0003.10.69
MA0004.10.0698
MA0006.10.669
MA0007.10.754
MA0009.10.835
MA0014.10.145
MA0017.10.0624
MA0018.20.636
MA0019.10.208
MA0024.10.00181
MA0025.10.17
MA0027.10.881
MA0028.17.93636e-4
MA0029.10.143
MA0030.10.142
MA0031.10.518
MA0035.20.353
MA0038.10.00119
MA0039.20.00115
MA0040.10.978
MA0041.10.502
MA0042.10.948
MA0043.10.176
MA0046.10.0892
MA0047.20.0466
MA0048.10.432
MA0050.13.35482e-5
MA0051.10.0115
MA0052.10.498
MA0055.10.0196
MA0057.10.689
MA0058.10.0328
MA0059.10.772
MA0060.13.422e-27
MA0061.10.00108
MA0062.26.46199e-6
MA0065.20.407
MA0066.10.803
MA0067.10.173
MA0068.10.86
MA0069.10.477
MA0070.10.0274
MA0071.10.826
MA0072.10.591
MA0073.10.84
MA0074.10.705
MA0076.11.50936e-4
MA0077.10.576
MA0078.10.33
MA0079.20.281
MA0080.29.2531e-8
MA0081.10.475
MA0083.10.331
MA0084.10.432
MA0087.10.758
MA0088.10.731
MA0090.10.895
MA0091.10.091
MA0092.10.599
MA0093.10.0646
MA0099.20.0249
MA0100.10.369
MA0101.10.0621
MA0102.20.00566
MA0103.12.24802e-6
MA0104.20.423
MA0105.15.75809e-6
MA0106.10.412
MA0107.10.00516
MA0108.20.00523
MA0111.10.387
MA0112.20.555
MA0113.10.493
MA0114.10.507
MA0115.10.917
MA0116.10.00112
MA0117.10.253
MA0119.10.0646
MA0122.10.176
MA0124.10.223
MA0125.10.0123
MA0131.10.126
MA0135.10.0949
MA0136.10.00776
MA0137.20.0997
MA0138.20.801
MA0139.10.666
MA0140.10.404
MA0141.10.533
MA0142.10.82
MA0143.10.0917
MA0144.10.037
MA0145.10.796
MA0146.10.0601
MA0147.10.609
MA0148.10.181
MA0149.10.363
MA0150.10.017
MA0152.10.529
MA0153.10.36
MA0154.10.0462
MA0155.10.522
MA0156.10.0775
MA0157.10.991
MA0159.10.459
MA0160.10.843
MA0162.10.689
MA0163.10.00396
MA0164.10.843
MA0258.10.814
MA0259.10.112



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12475

Novel motifP-value
10.172
100.619
1000.571
1010.139
1020.334
1030.165
1040.872
1050.154
1060.0264
1070.0823
1080.665
1090.092
110.505
1100.976
1110.0279
1120.24
1130.0848
1140.0131
1150.246
1160.547
1170.387
1180.319
1190.313
120.788
1200.864
1210.805
1220.453
1230.101
1240.12
1250.291
1260.779
1270.802
1280.0696
1290.505
130.572
1300.00194
1310.21
1320.814
1330.0092
1340.154
1350.299
1360.00155
1370.0975
1380.133
1390.0596
141
1400.299
1410.789
1420.267
1430.0359
1440.345
1450.273
1460.488
1470.746
1484.61885e-4
1490.215
150.404
1500.978
1510.157
1520.778
1530.0883
1540.394
1550.0492
1560.768
1570.423
1580.268
1590.655
160.491
1600.441
1610.639
1620.893
1630.667
1640.449
1650.37
1660.157
1670.891
1680.235
1690.967
170.829
180.0868
190.236
20.44
200.28
210.248
220.637
230.00184
240.946
250.937
260.317
270.571
280.845
290.842
30.112
300.436
310.471
320.152
330.523
340.242
350.103
360.281
370.16
380.994
390.516
40.621
400.243
410.174
420.194
430.104
440.266
450.903
460.139
470.883
480.977
490.146
50.126
500.479
510.539
520.313
530.132
540.377
550.439
560.41
570.347
580.297
590.317
60.531
600.0373
610.721
620.068
630.239
640.784
650.268
660.0307
670.514
680.961
690.639
70.655
700.0424
710.361
720.578
730.791
740.0659
750.99
760.979
770.411
780.944
790.263
80.415
800.0469
810.134
820.286
830.367
840.818
850.0701
860.464
870.00296
880.667
890.0853
90.151
907.07333e-5
910.0964
920.0211
930.188
940.121
950.02
960.0849
970.964
980.28
990.937



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12475


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
299 (adenocarcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000330 (EGF1 treatment sample)
0100093 (MCF-7 cell sample)
0100297 (carcinoma cell line sample)
0101912 (breast adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0100167 (adenocarcinoma cell line sample)
0100356 (breast cancer cell line sample)
0000426 (human MCF7 breast cancer cell line 0min after EGF1 treatment sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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