FF:14311-155C9: Difference between revisions

Latest revision as of 19:06, 4 June 2020

Name:	Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12400
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	19 years old adult
sex	female
age	19
cell type	fibroblast
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005828

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12400		CAGE		DRX008034		DRR008906

Accession ID Hg19

Library id		BAM		CTSS
CNhs12400		DRZ000331		DRZ001716

Accession ID Hg38

Library id		BAM		CTSS
CNhs12400		DRZ011681		DRZ013066

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005828

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10015.GGTAGC		sRNA-Seq		DRX036988		DRR041354

Accession ID Hg19

Library id		BAM		CTSS
SRhi10015.GGTAGC		DRZ006996

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.329
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.269
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.518
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.116
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.769
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0473
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.11
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.181
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.135
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.109
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.233
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.11
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0387
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0914
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.11
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0466
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.131
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.197
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	1.125
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.912
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.942
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.7
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.129
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.11
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.347
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0.11
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12400

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00303
MA0003.1	MA0003.1	0.85
MA0004.1	MA0004.1	0.31
MA0006.1	MA0006.1	0.881
MA0007.1	MA0007.1	0.496
MA0009.1	MA0009.1	0.159
MA0014.1	MA0014.1	0.424
MA0017.1	MA0017.1	0.00314
MA0018.2	MA0018.2	0.251
MA0019.1	MA0019.1	0.659
MA0024.1	MA0024.1	0.739
MA0025.1	MA0025.1	0.0403
MA0027.1	MA0027.1	0.957
MA0028.1	MA0028.1	0.764
MA0029.1	MA0029.1	0.526
MA0030.1	MA0030.1	0.397
MA0031.1	MA0031.1	0.139
MA0035.2	MA0035.2	0.059
MA0038.1	MA0038.1	0.471
MA0039.2	MA0039.2	0.345
MA0040.1	MA0040.1	0.885
MA0041.1	MA0041.1	0.565
MA0042.1	MA0042.1	0.549
MA0043.1	MA0043.1	0.128
MA0046.1	MA0046.1	0.0544
MA0047.2	MA0047.2	0.694
MA0048.1	MA0048.1	0.181
MA0050.1	MA0050.1	0.16
MA0051.1	MA0051.1	0.276
MA0052.1	MA0052.1	0.133
MA0055.1	MA0055.1	0.764
MA0057.1	MA0057.1	0.472
MA0058.1	MA0058.1	0.252
MA0059.1	MA0059.1	0.0679
MA0060.1	MA0060.1	0.296
MA0061.1	MA0061.1	7.72175e-4
MA0062.2	MA0062.2	0.189
MA0065.2	MA0065.2	3.8354e-4
MA0066.1	MA0066.1	0.418
MA0067.1	MA0067.1	0.366
MA0068.1	MA0068.1	0.921
MA0069.1	MA0069.1	0.487
MA0070.1	MA0070.1	0.454
MA0071.1	MA0071.1	0.189
MA0072.1	MA0072.1	0.205
MA0073.1	MA0073.1	0.752
MA0074.1	MA0074.1	0.765
MA0076.1	MA0076.1	0.456
MA0077.1	MA0077.1	0.485
MA0078.1	MA0078.1	0.691
MA0079.2	MA0079.2	0.918
MA0080.2	MA0080.2	1.74864e-9
MA0081.1	MA0081.1	0.0395
MA0083.1	MA0083.1	0.233
MA0084.1	MA0084.1	0.159
MA0087.1	MA0087.1	0.535
MA0088.1	MA0088.1	0.326
MA0090.1	MA0090.1	0.00508
MA0091.1	MA0091.1	0.557
MA0092.1	MA0092.1	0.438
MA0093.1	MA0093.1	0.39
MA0099.2	MA0099.2	0.00284
MA0100.1	MA0100.1	0.892
MA0101.1	MA0101.1	0.0051
MA0102.2	MA0102.2	0.488
MA0103.1	MA0103.1	3.41037e-4
MA0104.2	MA0104.2	0.0316
MA0105.1	MA0105.1	4.93609e-6
MA0106.1	MA0106.1	0.931
MA0107.1	MA0107.1	0.00316
MA0108.2	MA0108.2	0.774
MA0111.1	MA0111.1	0.344
MA0112.2	MA0112.2	0.273
MA0113.1	MA0113.1	0.701
MA0114.1	MA0114.1	0.0061
MA0115.1	MA0115.1	0.0272
MA0116.1	MA0116.1	0.393
MA0117.1	MA0117.1	0.637
MA0119.1	MA0119.1	0.844
MA0122.1	MA0122.1	0.394
MA0124.1	MA0124.1	0.0107
MA0125.1	MA0125.1	0.293
MA0131.1	MA0131.1	0.642
MA0135.1	MA0135.1	0.437
MA0136.1	MA0136.1	1.51923e-9
MA0137.2	MA0137.2	0.544
MA0138.2	MA0138.2	0.0915
MA0139.1	MA0139.1	0.816
MA0140.1	MA0140.1	0.131
MA0141.1	MA0141.1	0.0168
MA0142.1	MA0142.1	0.0543
MA0143.1	MA0143.1	0.517
MA0144.1	MA0144.1	0.804
MA0145.1	MA0145.1	0.333
MA0146.1	MA0146.1	0.058
MA0147.1	MA0147.1	0.12
MA0148.1	MA0148.1	0.219
MA0149.1	MA0149.1	0.214
MA0150.1	MA0150.1	0.0325
MA0152.1	MA0152.1	0.0412
MA0153.1	MA0153.1	0.677
MA0154.1	MA0154.1	0.0796
MA0155.1	MA0155.1	0.675
MA0156.1	MA0156.1	0.00197
MA0157.1	MA0157.1	0.0903
MA0159.1	MA0159.1	0.25
MA0160.1	MA0160.1	0.00306
MA0162.1	MA0162.1	0.287
MA0163.1	MA0163.1	0.833
MA0164.1	MA0164.1	0.711
MA0258.1	MA0258.1	0.131
MA0259.1	MA0259.1	0.379

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12400

Novel motif	Logo	P-value
1	1	0.0759
10	10	0.338
100	100	0.929
101	101	0.405
102	102	0.358
103	103	0.372
104	104	0.994
105	105	0.0536
106	106	0.0131
107	107	0.607
108	108	0.591
109	109	0.119
11	11	0.145
110	110	0.803
111	111	0.0193
112	112	0.42
113	113	0.0483
114	114	0.103
115	115	0.098
116	116	0.912
117	117	0.354
118	118	0.44
119	119	0.0738
12	12	0.416
120	120	0.965
121	121	0.93
122	122	0.061
123	123	0.00559
124	124	0.0348
125	125	0.174
126	126	0.203
127	127	0.0217
128	128	0.0424
129	129	0.213
13	13	0.335
130	130	0.974
131	131	0.893
132	132	0.503
133	133	0.853
134	134	0.866
135	135	0.312
136	136	0.896
137	137	0.564
138	138	0.419
139	139	0.175
14	14	0.348
140	140	0.485
141	141	0.783
142	142	0.649
143	143	0.0394
144	144	0.809
145	145	0.309
146	146	0.459
147	147	0.191
148	148	0.0503
149	149	0.279
15	15	0.0716
150	150	0.82
151	151	0.21
152	152	0.173
153	153	0.328
154	154	0.902
155	155	0.0406
156	156	0.119
157	157	0.562
158	158	0.0583
159	159	0.937
16	16	0.917
160	160	0.0456
161	161	0.742
162	162	0.949
163	163	0.718
164	164	0.387
165	165	0.724
166	166	0.036
167	167	0.192
168	168	0.207
169	169	0.425
17	17	0.461
18	18	0.553
19	19	0.602
2	2	0.624
20	20	0.864
21	21	0.899
22	22	0.662
23	23	0.756
24	24	0.199
25	25	0.0994
26	26	0.971
27	27	0.342
28	28	0.58
29	29	0.694
3	3	0.301
30	30	0.745
31	31	0.806
32	32	6.61488e-10
33	33	0.604
34	34	0.741
35	35	0.27
36	36	0.0137
37	37	0.404
38	38	0.225
39	39	0.919
4	4	0.135
40	40	0.0525
41	41	0.0442
42	42	0.146
43	43	0.234
44	44	0.792
45	45	0.48
46	46	0.323
47	47	0.155
48	48	0.402
49	49	0.0481
5	5	0.373
50	50	0.943
51	51	0.28
52	52	0.351
53	53	0.144
54	54	0.439
55	55	0.679
56	56	0.243
57	57	0.364
58	58	0.123
59	59	0.352
6	6	0.833
60	60	0.152
61	61	0.22
62	62	0.0609
63	63	0.488
64	64	0.182
65	65	0.255
66	66	0.244
67	67	0.814
68	68	0.584
69	69	0.589
7	7	0.0864
70	70	0.0575
71	71	0.398
72	72	0.355
73	73	0.201
74	74	0.422
75	75	0.287
76	76	0.701
77	77	0.717
78	78	0.0248
79	79	0.0714
8	8	0.204
80	80	0.187
81	81	0.431
82	82	0.0906
83	83	0.0537
84	84	0.558
85	85	0.391
86	86	0.784
87	87	0.838
88	88	0.522
89	89	0.652
9	9	0.9
90	90	0.0337
91	91	0.538
92	92	0.55
93	93	0.286
94	94	0.127
95	95	0.104
96	96	0.0426
97	97	0.258
98	98	0.00615
99	99	0.501

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12400

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000666 human Fibroblast - Aortic Adventitial, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005828
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005828
+|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716;DRZ011681;DRZ013066
+|accession_numbers_RNASeq=sRNA-Seq;DRX036988;DRR041354;DRZ006996
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.67!121.91!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.58!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.53!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.53!46.47!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.52!31.84!SOX17;;chr7:44143925..44143970,+!p1@AEBP1!1.49!637.92!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!43.60!CREB3L1;;chr7:44143978..44143989,+!p2@AEBP1!1.39!42.45!AEBP1;;chr9:16870659..16870675,-!p2@BNC2!1.33!24.67!BNC2;;chr4:174451370..174451387,-!p1@HAND2!1.32!19.79!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.29!18.64!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.51!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!1.20!18.93!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!36.72!ZFPM2;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.06!PRRX1;;chr3:169381183..169381205,-!p4@MECOM!1.17!13.77!MECOM;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.15!13.19!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.49!NR4A1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!16.92!RUNX1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.33!TBX20;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.05!RUNX1T1;;chr15:67430351..67430366,+!p10@SMAD3!1.11!11.76!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.76!EBF3;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.64!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.34!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!1.08!34.13!IFI16;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!120.47!PLAGL1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.62!ZBTB38;;chr8:77593750..77593757,+!p3@ZFHX4!1.05!10.33!ZFHX4;;chr19:50432453..50432468,+!p1@ATF5!1.03!549.29!ATF5;;chr2:66662281..66662308,+!p1@MEIS1!1.03!34.13!MEIS1;;chr10:114710244..114710257,+!p3@TCF7L2!1.03!26.68!TCF7L2;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.75!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.03!9.75!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.33!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.61!MECOM;;chr3:71630980..71631110,-!p3@FOXP1!0.99!31.55!FOXP1;;chr8:72756667..72756736,-!p2@MSC!0.99!14.05!MSC;;chr8:106330696..106330719,+!p2@ZFPM2!0.99!11.19!ZFPM2;;chr6:10415276..10415341,-!p2@TFAP2A!0.98!10.61!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.98!8.61!HAND2;;chr3:141087393..141087426,+!p3@ZBTB38!0.97!33.85!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.66!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.97!8.32!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.57!ZFHX4;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.03!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.37!EBF1;;chr18:19749517..19749531,+!p3@GATA6!0.94!14.05!GATA6;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.19!TFAP2A;;chr12:72056800..72056834,+!p1@THAP2!0.94!10.61!THAP2;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.36!NFATC4;;chr2:102091144..102091183,-!p2@RFX8!0.93!7.46!RFX8;;chr3:141087454..141087465,+!p19@ZBTB38!0.93!7.46!ZBTB38;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.71!FOSB;;chr9:16870710..16870763,-!p1@BNC2!0.92!12.91!BNC2;;chr8:72756637..72756664,-!p3@MSC!0.92!8.32!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.08!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.91!7.17!ARNT2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!70.27!GLIS2;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.98!ZBTB20;;chr17:46126136..46126152,+!p1@NFE2L1!0.88!355.39!NFE2L1;;chr9:102584262..102584276,+!p1@NR4A3!0.88!15.20!NR4A3;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.94!SMARCD3;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.36!TWIST1;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.47!FOXP2;;chr9:14314566..14314618,-!p1@NFIB!0.86!79.17!NFIB;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.86!6.31!SEBOX;;chr18:19749504..19749515,+!p5@GATA6!0.85!6.02!GATA6;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.78!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.83!83.47!ARID5B;;chr6:19837592..19837621,+!p1@ID4!0.83!37.86!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.83!34.42!NFIB;;chr17:46132044..46132080,+!p4@NFE2L1!0.83!5.74!NFE2L1;;chr12:57504975..57505019,-!p2@STAT6!0.81!23.81!STAT6;;chr3:141121847..141121868,+!p5@ZBTB38!0.81!8.61!ZBTB38;;chr17:46655704..46655718,-!p2@HOXB4!0.81!8.32!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.45!GATA6;;chr3:187463179..187463201,-!p2@BCL6!0.80!23.81!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!0.80!10.90!TRPS1;;chr3:168864315..168864339,-!p2@MECOM!0.80!9.18!MECOM;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.27!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!0.79!25.53!MEIS2;;chr2:66662249..66662267,+!p2@MEIS1!0.79!21.51!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.07!NCOA7;;chr15:37392616..37392638,-!p2@MEIS2!0.79!17.21!MEIS2;;chr6:144289132..144289134,-!p3@PLAGL1!0.79!12.62!PLAGL1;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.17!CENPT;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr2:66662895..66662907,+!p3@MEIS1!0.79!6.60!MEIS1;;chr5:158527139..158527161,-!p5@EBF1!0.79!5.16!EBF1;;chr11:125034605..125034636,+!p2@PKNOX2!0.79!5.16!PKNOX2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.47!NR4A3;;chr2:239756739..239756755,+!p2@TWIST2!0.78!8.89!TWIST2;;chr1:164528911..164528940,+!p7@PBX1!0.78!7.74!PBX1;;chr14:62162258..62162269,+!p2@HIF1A!0.77!52.20!HIF1A;;chr8:116680215..116680245,-!p6@TRPS1!0.77!8.03!TRPS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.77!4.88!CREB3L1;;chr1:158979792..158979814,+!p2@IFI16!0.76!50.20!IFI16;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.19!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.76!10.90!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.76!7.17!MSC;;chr5:158526459..158526481,-!p2@EBF1!0.76!6.60!EBF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.45!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.32!KLF4;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.40!TSC22D1;;chr15:37391588..37391604,-!p11@MEIS2!0.75!6.02!MEIS2;;chr5:158527104..158527135,-!p4@EBF1!0.75!4.59!EBF1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.75!4.59!PRRX2;;chr9:16727978..16728010,-!p6@BNC2!0.75!4.59!BNC2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.59!ZEB1;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.61!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.88!HMGA2;;chrX:66763856..66763896,+!p1@AR!0.73!6.60!AR;;chr7:148959269..148959326,+!p1@ZNF783!0.72!38.72!ZNF783;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.31!NFIB;;chr8:93074848..93074871,-!p3@RUNX1T1!0.72!4.30!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.30!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.30!ZNF668;;chr2:66662396..66662407,+!p4@MEIS1!0.72!4.30!MEIS1;;chr3:25470156..25470227,+!p2@RARB!0.72!4.30!RARB;;chr19:50435736..50435781,+!p3@ATF5!0.71!6.02!ATF5;;chr15:37390482..37390572,-!p7@MEIS2!0.70!5.74!MEIS2;;chrX:66763815..66763854,+!p2@AR!0.70!5.45!AR;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.59!TCF4;;chr7:44143738..44143760,+!p4@AEBP1!0.70!4.59!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.70!4.02!ZFHX4;;chr2:102091566..102091581,-!p1@RFX8!0.70!4.02!RFX8;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!4.02!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr5:137801160..137801176,+!p1@EGR1!0.69!445.17!EGR1;;chr1:61548374..61548415,+!p4@NFIA!0.69!7.74!NFIA;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.60!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.68!40.16!HMGA2;;chr2:157198916..157198978,-!p2@NR4A2!0.68!14.92!NR4A2;;chr5:321810..321877,+!p1@AHRR!0.68!13.48!AHRR;;chr8:22550982..22550999,-!p1@EGR3!0.68!11.76!EGR3;;chr4:206390..206444,+!p1@ZNF876P!0.68!7.17!ZNF876P;;chr12:80085255..80085284,-!p9@PAWR!0.68!5.74!PAWR;;chr9:132427972..132428056,+!p1@PRRX2!0.68!5.16!PRRX2;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.76!NCOR2;;chr9:4300050..4300118,-!p1@GLIS3!0.67!27.54!GLIS3;;chr2:121493425..121493474,+!p1@GLI2!0.67!8.89!GLI2;;chr15:57511609..57511651,+!p2@TCF12!0.67!6.60!TCF12;;chr9:110251836..110251887,-!p4@KLF4!0.67!5.16!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.73!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.66!496.80!FOS;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.91!TWIST2;;chr15:96874927..96874938,+!p8@NR2F2!0.66!8.32!NR2F2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.66!8.03!SMARCAD1;;chr20:25677399..25677433,-!p3@ZNF337!0.66!7.46!ZNF337;;chr6:32095523..32095564,-!p2@ATF6B!0.66!5.16!ATF6B;;chr10:31608127..31608156,+!p1@ZEB1!0.65!75.44!ZEB1;;chr2:208031542..208031595,-!p2@KLF7!0.65!28.68!KLF7;;chr20:42543441..42543497,+!p1@TOX2!0.65!17.78!TOX2;;chr17:46125685..46125699,+!p3@NFE2L1!0.65!13.77!NFE2L1;;chr9:102584241..102584261,+!p4@NR4A3!0.65!5.74!NR4A3;;chr15:37392703..37392717,-!p8@MEIS2!0.65!5.16!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.65!4.88!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!0.65!4.30!ZNF365;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.44!HMGA2;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.44!HOXA2;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.44!EBF2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.65!3.44!SEBOX;;chr19:13135386..13135435,+!p4@NFIX!0.65!3.44!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.64!577.98!HIF1A;;chr12:56753869..56753930,-!p1@STAT2!0.64!176.40!STAT2;;chr1:161736102..161736123,+!p1@ATF6!0.64!106.13!ATF6;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.05!E2F7;;chr15:37393449..37393528,-!p4@MEIS2!0.64!10.33!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.02!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.88!FOXF2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.59!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!0.63!29.83!MEF2C;;chr2:208031943..208031978,-!p5@KLF7!0.63!4.59!KLF7;;chr4:81104958..81104981,+!p5@PRDM8!0.63!4.02!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.73!CREB3L1;;chrX:128657457..128657475,-!p1@SMARCA1!0.62!43.60!SMARCA1;;chr5:176738887..176738934,-!p1@MXD3!0.62!25.24!MXD3;;chr1:161736038..161736056,+!p4@ATF6!0.62!8.32!ATF6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.74!GLI2;;chr1:151043070..151043110,+!p3@GABPB2!0.62!5.45!GABPB2;;chr5:43067636..430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@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.ctss.bed.gz
 |id=FF:14311-155C9
 |is_a=EFO:0002091;;FF:0000666
 |is_obsolete=
+|library_id=CNhs12400
+|library_id_phase_based=2:CNhs12400
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14311
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGTAGC.14311
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14311
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGTAGC.14311
 |name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 46: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12400,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=155
 |rna_catalog_number=N/A
@@ Line 60: / Line 81: @@
 |rna_tube_id=155C9
 |rna_weight_ug=43.67385
+|rnaseq_library_id=SRhi10015.GGTAGC
 |sample_age=19
+|sample_category=fractionations and perturbations
 |sample_cell_catalog=CC-7014
 |sample_cell_line=
@@ Line 82: / Line 105: @@
 |top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14311-155C9;search_select_hide=table117:FF:14311-155C9
 }}

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FF:14311-155C9: Difference between revisions

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Latest revision as of 19:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0