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{{f5samples
{{f5samples
|id=FF:14311-155C9
|DRA_sample_Accession=CAGE@SAMD00005828
|name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005828
|sample_id=14311
|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716;DRZ011681;DRZ013066
|rna_tube_id=155C9
|accession_numbers_RNASeq=sRNA-Seq;DRX036988;DRR041354;DRZ006996
|rna_box=155
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|rna_position=C9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|sample_cell_lot=lot:0000099514
|sample_cell_catalog=CC-7014
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=19 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=19
|sample_ethnicity=B
|rna_rin=
|rna_od260/230=2.15
|rna_od260/280=2.11
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=nuclear RNA
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=43.67385
|rna_concentration=0.97053
|sample_note=
|profile_hcage=CNhs12400,LSID914,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002547,CL:1000306
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000415,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001062,UBERON:0001637,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004663,UBERON:0004664,UBERON:0004872,UBERON:0004923,UBERON:0005423,UBERON:0005734,UBERON:0005742,UBERON:0006965,UBERON:0007240,UBERON:0007500,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000408,FF:0000350,FF:0000058,FF:0000406,FF:0000666
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.67!121.91!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.58!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.53!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.53!46.47!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.52!31.84!SOX17;;chr7:44143925..44143970,+!p1@AEBP1!1.49!637.92!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!43.60!CREB3L1;;chr7:44143978..44143989,+!p2@AEBP1!1.39!42.45!AEBP1;;chr9:16870659..16870675,-!p2@BNC2!1.33!24.67!BNC2;;chr4:174451370..174451387,-!p1@HAND2!1.32!19.79!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.29!18.64!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.51!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!1.20!18.93!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!36.72!ZFPM2;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.06!PRRX1;;chr3:169381183..169381205,-!p4@MECOM!1.17!13.77!MECOM;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.15!13.19!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.49!NR4A1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!16.92!RUNX1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.33!TBX20;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.05!RUNX1T1;;chr15:67430351..67430366,+!p10@SMAD3!1.11!11.76!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.76!EBF3;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.64!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.34!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!1.08!34.13!IFI16;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!120.47!PLAGL1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.62!ZBTB38;;chr8:77593750..77593757,+!p3@ZFHX4!1.05!10.33!ZFHX4;;chr19:50432453..50432468,+!p1@ATF5!1.03!549.29!ATF5;;chr2:66662281..66662308,+!p1@MEIS1!1.03!34.13!MEIS1;;chr10:114710244..114710257,+!p3@TCF7L2!1.03!26.68!TCF7L2;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.75!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.03!9.75!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.33!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.61!MECOM;;chr3:71630980..71631110,-!p3@FOXP1!0.99!31.55!FOXP1;;chr8:72756667..72756736,-!p2@MSC!0.99!14.05!MSC;;chr8:106330696..106330719,+!p2@ZFPM2!0.99!11.19!ZFPM2;;chr6:10415276..10415341,-!p2@TFAP2A!0.98!10.61!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.98!8.61!HAND2;;chr3:141087393..141087426,+!p3@ZBTB38!0.97!33.85!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.66!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.97!8.32!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.57!ZFHX4;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.03!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.37!EBF1;;chr18:19749517..19749531,+!p3@GATA6!0.94!14.05!GATA6;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.19!TFAP2A;;chr12:72056800..72056834,+!p1@THAP2!0.94!10.61!THAP2;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.36!NFATC4;;chr2:102091144..102091183,-!p2@RFX8!0.93!7.46!RFX8;;chr3:141087454..141087465,+!p19@ZBTB38!0.93!7.46!ZBTB38;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.71!FOSB;;chr9:16870710..16870763,-!p1@BNC2!0.92!12.91!BNC2;;chr8:72756637..72756664,-!p3@MSC!0.92!8.32!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.08!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.91!7.17!ARNT2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!70.27!GLIS2;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.98!ZBTB20;;chr17:46126136..46126152,+!p1@NFE2L1!0.88!355.39!NFE2L1;;chr9:102584262..102584276,+!p1@NR4A3!0.88!15.20!NR4A3;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.94!SMARCD3;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.36!TWIST1;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.47!FOXP2;;chr9:14314566..14314618,-!p1@NFIB!0.86!79.17!NFIB;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.86!6.31!SEBOX;;chr18:19749504..19749515,+!p5@GATA6!0.85!6.02!GATA6;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.78!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.83!83.47!ARID5B;;chr6:19837592..19837621,+!p1@ID4!0.83!37.86!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.83!34.42!NFIB;;chr17:46132044..46132080,+!p4@NFE2L1!0.83!5.74!NFE2L1;;chr12:57504975..57505019,-!p2@STAT6!0.81!23.81!STAT6;;chr3:141121847..141121868,+!p5@ZBTB38!0.81!8.61!ZBTB38;;chr17:46655704..46655718,-!p2@HOXB4!0.81!8.32!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.45!GATA6;;chr3:187463179..187463201,-!p2@BCL6!0.80!23.81!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!0.80!10.90!TRPS1;;chr3:168864315..168864339,-!p2@MECOM!0.80!9.18!MECOM;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.27!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!0.79!25.53!MEIS2;;chr2:66662249..66662267,+!p2@MEIS1!0.79!21.51!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.07!NCOA7;;chr15:37392616..37392638,-!p2@MEIS2!0.79!17.21!MEIS2;;chr6:144289132..144289134,-!p3@PLAGL1!0.79!12.62!PLAGL1;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.17!CENPT;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr2:66662895..66662907,+!p3@MEIS1!0.79!6.60!MEIS1;;chr5:158527139..158527161,-!p5@EBF1!0.79!5.16!EBF1;;chr11:125034605..125034636,+!p2@PKNOX2!0.79!5.16!PKNOX2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.47!NR4A3;;chr2:239756739..239756755,+!p2@TWIST2!0.78!8.89!TWIST2;;chr1:164528911..164528940,+!p7@PBX1!0.78!7.74!PBX1;;chr14:62162258..62162269,+!p2@HIF1A!0.77!52.20!HIF1A;;chr8:116680215..116680245,-!p6@TRPS1!0.77!8.03!TRPS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.77!4.88!CREB3L1;;chr1:158979792..158979814,+!p2@IFI16!0.76!50.20!IFI16;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.19!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.76!10.90!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.76!7.17!MSC;;chr5:158526459..158526481,-!p2@EBF1!0.76!6.60!EBF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.45!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.32!KLF4;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.40!TSC22D1;;chr15:37391588..37391604,-!p11@MEIS2!0.75!6.02!MEIS2;;chr5:158527104..158527135,-!p4@EBF1!0.75!4.59!EBF1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.75!4.59!PRRX2;;chr9:16727978..16728010,-!p6@BNC2!0.75!4.59!BNC2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.59!ZEB1;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.61!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.88!HMGA2;;chrX:66763856..66763896,+!p1@AR!0.73!6.60!AR;;chr7:148959269..148959326,+!p1@ZNF783!0.72!38.72!ZNF783;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.31!NFIB;;chr8:93074848..93074871,-!p3@RUNX1T1!0.72!4.30!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.30!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.30!ZNF668;;chr2:66662396..66662407,+!p4@MEIS1!0.72!4.30!MEIS1;;chr3:25470156..25470227,+!p2@RARB!0.72!4.30!RARB;;chr19:50435736..50435781,+!p3@ATF5!0.71!6.02!ATF5;;chr15:37390482..37390572,-!p7@MEIS2!0.70!5.74!MEIS2;;chrX:66763815..66763854,+!p2@AR!0.70!5.45!AR;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.59!TCF4;;chr7:44143738..44143760,+!p4@AEBP1!0.70!4.59!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.70!4.02!ZFHX4;;chr2:102091566..102091581,-!p1@RFX8!0.70!4.02!RFX8;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!4.02!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr5:137801160..137801176,+!p1@EGR1!0.69!445.17!EGR1;;chr1:61548374..61548415,+!p4@NFIA!0.69!7.74!NFIA;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.60!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.68!40.16!HMGA2;;chr2:157198916..157198978,-!p2@NR4A2!0.68!14.92!NR4A2;;chr5:321810..321877,+!p1@AHRR!0.68!13.48!AHRR;;chr8:22550982..22550999,-!p1@EGR3!0.68!11.76!EGR3;;chr4:206390..206444,+!p1@ZNF876P!0.68!7.17!ZNF876P;;chr12:80085255..80085284,-!p9@PAWR!0.68!5.74!PAWR;;chr9:132427972..132428056,+!p1@PRRX2!0.68!5.16!PRRX2;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.76!NCOR2;;chr9:4300050..4300118,-!p1@GLIS3!0.67!27.54!GLIS3;;chr2:121493425..121493474,+!p1@GLI2!0.67!8.89!GLI2;;chr15:57511609..57511651,+!p2@TCF12!0.67!6.60!TCF12;;chr9:110251836..110251887,-!p4@KLF4!0.67!5.16!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.73!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.66!496.80!FOS;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.91!TWIST2;;chr15:96874927..96874938,+!p8@NR2F2!0.66!8.32!NR2F2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.66!8.03!SMARCAD1;;chr20:25677399..25677433,-!p3@ZNF337!0.66!7.46!ZNF337;;chr6:32095523..32095564,-!p2@ATF6B!0.66!5.16!ATF6B;;chr10:31608127..31608156,+!p1@ZEB1!0.65!75.44!ZEB1;;chr2:208031542..208031595,-!p2@KLF7!0.65!28.68!KLF7;;chr20:42543441..42543497,+!p1@TOX2!0.65!17.78!TOX2;;chr17:46125685..46125699,+!p3@NFE2L1!0.65!13.77!NFE2L1;;chr9:102584241..102584261,+!p4@NR4A3!0.65!5.74!NR4A3;;chr15:37392703..37392717,-!p8@MEIS2!0.65!5.16!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.65!4.88!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!0.65!4.30!ZNF365;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.44!HMGA2;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.44!HOXA2;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.44!EBF2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.65!3.44!SEBOX;;chr19:13135386..13135435,+!p4@NFIX!0.65!3.44!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.64!577.98!HIF1A;;chr12:56753869..56753930,-!p1@STAT2!0.64!176.40!STAT2;;chr1:161736102..161736123,+!p1@ATF6!0.64!106.13!ATF6;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.05!E2F7;;chr15:37393449..37393528,-!p4@MEIS2!0.64!10.33!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.02!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.88!FOXF2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.59!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!0.63!29.83!MEF2C;;chr2:208031943..208031978,-!p5@KLF7!0.63!4.59!KLF7;;chr4:81104958..81104981,+!p5@PRDM8!0.63!4.02!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.73!CREB3L1;;chrX:128657457..128657475,-!p1@SMARCA1!0.62!43.60!SMARCA1;;chr5:176738887..176738934,-!p1@MXD3!0.62!25.24!MXD3;;chr1:161736038..161736056,+!p4@ATF6!0.62!8.32!ATF6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.74!GLI2;;chr1:151043070..151043110,+!p3@GABPB2!0.62!5.45!GABPB2;;chr5:43067636..4306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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.ctss.bed.gz
|id=FF:14311-155C9
|is_a=EFO:0002091;;FF:0000666
|is_obsolete=
|library_id=CNhs12400
|library_id_phase_based=2:CNhs12400
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14311
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGTAGC.14311
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14311
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGTAGC.14311
|name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12400,LSID914,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=155
|rna_catalog_number=N/A
|rna_concentration=0.97053
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.15
|rna_od260/280=2.11
|rna_position=C9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=155C9
|rna_weight_ug=43.67385
|rnaseq_library_id=SRhi10015.GGTAGC
|sample_age=19
|sample_category=fractionations and perturbations
|sample_cell_catalog=CC-7014
|sample_cell_line=
|sample_cell_lot=lot:0000099514
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=19 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=B
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.92171242713089e-235!GO:0005737;cytoplasm;3.36641841389446e-151!GO:0043231;intracellular membrane-bound organelle;2.58194996329976e-146!GO:0043227;membrane-bound organelle;5.88129187739565e-146!GO:0043226;organelle;3.63548470314331e-144!GO:0043229;intracellular organelle;5.15471184316831e-144!GO:0044444;cytoplasmic part;1.22114565742715e-118!GO:0044422;organelle part;1.58544958514608e-113!GO:0044446;intracellular organelle part;3.19254681654037e-112!GO:0044238;primary metabolic process;6.68098608241267e-72!GO:0044237;cellular metabolic process;1.10321133302317e-67!GO:0043170;macromolecule metabolic process;7.85057451930323e-65!GO:0005515;protein binding;1.36788291300144e-64!GO:0032991;macromolecular complex;1.62179921875181e-61!GO:0043233;organelle lumen;3.81085161834999e-52!GO:0031974;membrane-enclosed lumen;3.81085161834999e-52!GO:0044428;nuclear part;1.34660761554619e-51!GO:0031090;organelle membrane;1.54634829188788e-50!GO:0003723;RNA binding;2.39235467410607e-50!GO:0005634;nucleus;5.77251848195632e-47!GO:0030529;ribonucleoprotein complex;7.27866452766715e-47!GO:0019538;protein metabolic process;3.50734437606177e-46!GO:0044260;cellular macromolecule metabolic process;1.20548432383068e-40!GO:0016043;cellular component organization and biogenesis;2.92319438601351e-40!GO:0044267;cellular protein metabolic process;4.73519032308466e-40!GO:0033036;macromolecule localization;1.65413322390318e-36!GO:0015031;protein transport;2.89513509815123e-36!GO:0006396;RNA processing;7.56049927581917e-36!GO:0005739;mitochondrion;1.101388342656e-34!GO:0045184;establishment of protein localization;1.56306879344127e-33!GO:0008104;protein localization;1.80080488814527e-33!GO:0043283;biopolymer metabolic process;1.80080488814527e-33!GO:0046907;intracellular transport;1.00320474500986e-32!GO:0043234;protein complex;1.00320474500986e-32!GO:0005783;endoplasmic reticulum;2.53826056764532e-32!GO:0009058;biosynthetic process;2.06011094765437e-31!GO:0031981;nuclear lumen;6.65368810472192e-31!GO:0006412;translation;1.78577731346688e-30!GO:0016071;mRNA metabolic process;6.69016456279899e-30!GO:0009059;macromolecule biosynthetic process;1.7401847203417e-28!GO:0012505;endomembrane system;6.37358272302456e-28!GO:0005829;cytosol;2.35169142783764e-27!GO:0031967;organelle envelope;1.09460801287696e-26!GO:0006886;intracellular protein transport;1.11375941167609e-26!GO:0031975;envelope;1.76787644353558e-26!GO:0044432;endoplasmic reticulum part;7.30630364212791e-26!GO:0005840;ribosome;5.16226605547751e-25!GO:0006397;mRNA processing;5.56631111648342e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.16179899767617e-25!GO:0008380;RNA splicing;1.18298751744648e-24!GO:0006996;organelle organization and biogenesis;1.29588916335027e-24!GO:0044249;cellular biosynthetic process;4.64881238636596e-24!GO:0000166;nucleotide binding;7.3421021401054e-24!GO:0010467;gene expression;8.86773197258058e-24!GO:0065003;macromolecular complex assembly;1.95034878563359e-23!GO:0044429;mitochondrial part;1.33493592723946e-22!GO:0003735;structural constituent of ribosome;9.91713419445098e-22!GO:0005794;Golgi apparatus;1.01229448069444e-20!GO:0022607;cellular component assembly;1.09544894112463e-20!GO:0033279;ribosomal subunit;6.65792683902347e-20!GO:0051641;cellular localization;1.81744294128126e-19!GO:0051649;establishment of cellular localization;3.05394887280533e-19!GO:0007049;cell cycle;3.92061511096204e-19!GO:0006259;DNA metabolic process;3.96308895809357e-19!GO:0043228;non-membrane-bound organelle;4.19795887750136e-19!GO:0043232;intracellular non-membrane-bound organelle;4.19795887750136e-19!GO:0005654;nucleoplasm;9.813690671837e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98291710585849e-18!GO:0048770;pigment granule;2.17889486846445e-18!GO:0042470;melanosome;2.17889486846445e-18!GO:0016462;pyrophosphatase activity;2.7764093241755e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.98470398309385e-18!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.29821921573668e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42376979189511e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.60774093807953e-18!GO:0017111;nucleoside-triphosphatase activity;5.9569726167155e-18!GO:0005789;endoplasmic reticulum membrane;2.40138860737868e-17!GO:0005524;ATP binding;4.56329875568588e-17!GO:0017076;purine nucleotide binding;5.10130794034412e-17!GO:0005681;spliceosome;5.68568112348114e-17!GO:0006457;protein folding;6.40866286468629e-17!GO:0032553;ribonucleotide binding;9.20007307921241e-17!GO:0032555;purine ribonucleotide binding;9.20007307921241e-17!GO:0030554;adenyl nucleotide binding;1.42820502732716e-16!GO:0032559;adenyl ribonucleotide binding;1.48167162709357e-16!GO:0016874;ligase activity;7.20356342854097e-16!GO:0022402;cell cycle process;2.68767701275919e-15!GO:0005740;mitochondrial envelope;2.89910725995405e-15!GO:0031966;mitochondrial membrane;1.02706989957602e-14!GO:0044451;nucleoplasm part;1.10941731465424e-14!GO:0019866;organelle inner membrane;1.63851371093203e-14!GO:0003676;nucleic acid binding;3.58240060393457e-14!GO:0008134;transcription factor binding;5.1648129227138e-14!GO:0006605;protein targeting;5.22713094835758e-14!GO:0048193;Golgi vesicle transport;5.27180448644771e-14!GO:0005793;ER-Golgi intermediate compartment;7.07949417198101e-14!GO:0000278;mitotic cell cycle;1.38966553816323e-13!GO:0006119;oxidative phosphorylation;1.77094503638386e-13!GO:0044445;cytosolic part;2.94937741883514e-13!GO:0043412;biopolymer modification;5.36016024028978e-13!GO:0016887;ATPase activity;8.69539651713869e-13!GO:0005743;mitochondrial inner membrane;1.58533162814138e-12!GO:0005730;nucleolus;3.40230816300437e-12!GO:0031965;nuclear membrane;3.64020874949002e-12!GO:0005788;endoplasmic reticulum lumen;3.64020874949002e-12!GO:0005635;nuclear envelope;3.64020874949002e-12!GO:0043285;biopolymer catabolic process;3.9921838660548e-12!GO:0044265;cellular macromolecule catabolic process;5.8308219622552e-12!GO:0006512;ubiquitin cycle;5.99641130300974e-12!GO:0042623;ATPase activity, coupled;1.42045533271089e-11!GO:0006974;response to DNA damage stimulus;1.42045533271089e-11!GO:0051082;unfolded protein binding;1.51838525753034e-11!GO:0006464;protein modification process;1.58311714252951e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.6857004295522e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.00731234683823e-11!GO:0016192;vesicle-mediated transport;2.06034964799872e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.2436900021347e-11!GO:0008135;translation factor activity, nucleic acid binding;2.43719204276852e-11!GO:0022618;protein-RNA complex assembly;2.75690532171384e-11!GO:0044257;cellular protein catabolic process;2.97028677847777e-11!GO:0030163;protein catabolic process;3.30635651669159e-11!GO:0019941;modification-dependent protein catabolic process;3.45209797366785e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.45209797366785e-11!GO:0009057;macromolecule catabolic process;3.7937483241357e-11!GO:0044453;nuclear membrane part;4.99279637598874e-11!GO:0015934;large ribosomal subunit;5.89511441218448e-11!GO:0016070;RNA metabolic process;7.93154355120295e-11!GO:0051186;cofactor metabolic process;1.59127258227548e-10!GO:0004386;helicase activity;1.60916569351878e-10!GO:0044455;mitochondrial membrane part;2.26397799845898e-10!GO:0000087;M phase of mitotic cell cycle;3.26230883483937e-10!GO:0005773;vacuole;3.371373190125e-10!GO:0007067;mitosis;4.08672958570314e-10!GO:0006913;nucleocytoplasmic transport;7.92100313300416e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03833484284506e-09!GO:0000375;RNA splicing, via transesterification reactions;1.03833484284506e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03833484284506e-09!GO:0031980;mitochondrial lumen;1.04831385635165e-09!GO:0005759;mitochondrial matrix;1.04831385635165e-09!GO:0051726;regulation of cell cycle;1.13014326362358e-09!GO:0015935;small ribosomal subunit;1.16224597937187e-09!GO:0044248;cellular catabolic process;1.23784625882854e-09!GO:0000074;regulation of progression through cell cycle;1.33415570759885e-09!GO:0051169;nuclear transport;1.44298489774665e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.76083740119737e-09!GO:0044431;Golgi apparatus part;1.82733982660094e-09!GO:0048523;negative regulation of cellular process;1.85243181056408e-09!GO:0000323;lytic vacuole;2.13588886770888e-09!GO:0005764;lysosome;2.13588886770888e-09!GO:0003712;transcription cofactor activity;2.13588886770888e-09!GO:0016604;nuclear body;2.29721529206605e-09!GO:0006281;DNA repair;4.36531264042057e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.54490131697434e-09!GO:0022403;cell cycle phase;5.07137564835357e-09!GO:0043687;post-translational protein modification;6.65576882948532e-09!GO:0003743;translation initiation factor activity;7.51287263443409e-09!GO:0006461;protein complex assembly;8.21289615469317e-09!GO:0015630;microtubule cytoskeleton;8.49248810382346e-09!GO:0051276;chromosome organization and biogenesis;1.00062125103386e-08!GO:0016787;hydrolase activity;1.11802253231351e-08!GO:0008026;ATP-dependent helicase activity;1.17212001562031e-08!GO:0006399;tRNA metabolic process;1.20952086609736e-08!GO:0005694;chromosome;1.23671491051126e-08!GO:0006732;coenzyme metabolic process;1.42055278361197e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.45233507521444e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.45233507521444e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.45233507521444e-08!GO:0008565;protein transporter activity;1.4653535362219e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.48303029309142e-08!GO:0051301;cell division;1.64636711177992e-08!GO:0006446;regulation of translational initiation;2.03379989080841e-08!GO:0043038;amino acid activation;2.04999755056389e-08!GO:0006418;tRNA aminoacylation for protein translation;2.04999755056389e-08!GO:0043039;tRNA aminoacylation;2.04999755056389e-08!GO:0009719;response to endogenous stimulus;2.10876097971324e-08!GO:0005746;mitochondrial respiratory chain;2.31251487313875e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.15676875455236e-08!GO:0016607;nuclear speck;8.12248176571456e-08!GO:0048519;negative regulation of biological process;8.49882690832583e-08!GO:0008639;small protein conjugating enzyme activity;9.56787373158949e-08!GO:0004842;ubiquitin-protein ligase activity;1.05861623621108e-07!GO:0044427;chromosomal part;1.06616986324171e-07!GO:0006260;DNA replication;1.14361545663341e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.19132193092083e-07!GO:0003954;NADH dehydrogenase activity;1.19132193092083e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19132193092083e-07!GO:0005643;nuclear pore;1.34480381575667e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.74892145451283e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.75277625583822e-07!GO:0005768;endosome;1.82014647600464e-07!GO:0006413;translational initiation;2.10401890295503e-07!GO:0042254;ribosome biogenesis and assembly;2.27845986533699e-07!GO:0016740;transferase activity;2.41880061682905e-07!GO:0017038;protein import;2.74145140466246e-07!GO:0000139;Golgi membrane;2.86624502852338e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.86624502852338e-07!GO:0012501;programmed cell death;3.31037913472741e-07!GO:0000279;M phase;3.56448029966511e-07!GO:0008654;phospholipid biosynthetic process;4.04783042421629e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.49365359634238e-07!GO:0019787;small conjugating protein ligase activity;4.74234530845395e-07!GO:0009259;ribonucleotide metabolic process;5.42639212053046e-07!GO:0006915;apoptosis;6.50906046404875e-07!GO:0030120;vesicle coat;7.44056316573613e-07!GO:0030662;coated vesicle membrane;7.44056316573613e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.69777068032512e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.90432394851523e-07!GO:0048475;coated membrane;8.32730858016394e-07!GO:0030117;membrane coat;8.32730858016394e-07!GO:0006403;RNA localization;9.08869948555805e-07!GO:0006323;DNA packaging;1.09673412704004e-06!GO:0009060;aerobic respiration;1.10605584373971e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.11149192504667e-06!GO:0042773;ATP synthesis coupled electron transport;1.11149192504667e-06!GO:0050657;nucleic acid transport;1.12139080089278e-06!GO:0051236;establishment of RNA localization;1.12139080089278e-06!GO:0050658;RNA transport;1.12139080089278e-06!GO:0006163;purine nucleotide metabolic process;1.21149507035682e-06!GO:0030964;NADH dehydrogenase complex (quinone);1.2446281648703e-06!GO:0045271;respiratory chain complex I;1.2446281648703e-06!GO:0005747;mitochondrial respiratory chain complex I;1.2446281648703e-06!GO:0045786;negative regulation of progression through cell cycle;1.24768678873226e-06!GO:0009150;purine ribonucleotide metabolic process;1.38637980293863e-06!GO:0046930;pore complex;1.78965783562079e-06!GO:0050794;regulation of cellular process;1.82095057720278e-06!GO:0005813;centrosome;1.97025524429497e-06!GO:0043566;structure-specific DNA binding;2.00971149527761e-06!GO:0008219;cell death;2.03650538651472e-06!GO:0016265;death;2.03650538651472e-06!GO:0009056;catabolic process;2.1018067461883e-06!GO:0006366;transcription from RNA polymerase II promoter;2.31067768347855e-06!GO:0015986;ATP synthesis coupled proton transport;2.32310068166079e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32310068166079e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.36456680238815e-06!GO:0065002;intracellular protein transport across a membrane;2.42945497349403e-06!GO:0019829;cation-transporting ATPase activity;2.4970913841024e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.57578934069802e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.60342433789838e-06!GO:0005815;microtubule organizing center;2.60342433789838e-06!GO:0031988;membrane-bound vesicle;2.63627053879644e-06!GO:0051170;nuclear import;3.39963604167038e-06!GO:0045333;cellular respiration;3.43627217984411e-06!GO:0006164;purine nucleotide biosynthetic process;3.72655803744836e-06!GO:0009055;electron carrier activity;3.76950747714312e-06!GO:0016881;acid-amino acid ligase activity;3.9378949763313e-06!GO:0006606;protein import into nucleus;3.94832951590822e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.98308487060356e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.17190059332735e-06!GO:0009260;ribonucleotide biosynthetic process;4.5354775443326e-06!GO:0003714;transcription corepressor activity;5.85252965770721e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.21164951732196e-06!GO:0005770;late endosome;7.50208955026026e-06!GO:0006099;tricarboxylic acid cycle;9.12665685665331e-06!GO:0046356;acetyl-CoA catabolic process;9.12665685665331e-06!GO:0009141;nucleoside triphosphate metabolic process;9.50859089618707e-06!GO:0051789;response to protein stimulus;9.5292357929625e-06!GO:0006986;response to unfolded protein;9.5292357929625e-06!GO:0003724;RNA helicase activity;1.03804088996625e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.05862289414728e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.05862289414728e-05!GO:0031982;vesicle;1.11142871207457e-05!GO:0031410;cytoplasmic vesicle;1.11142871207457e-05!GO:0051188;cofactor biosynthetic process;1.17691544504104e-05!GO:0003697;single-stranded DNA binding;1.21485135675974e-05!GO:0009109;coenzyme catabolic process;1.3276442081886e-05!GO:0016564;transcription repressor activity;1.34734784673788e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.476742150942e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.476742150942e-05!GO:0051246;regulation of protein metabolic process;1.56255185780017e-05!GO:0051187;cofactor catabolic process;1.64274823565477e-05!GO:0046034;ATP metabolic process;1.69832523541563e-05!GO:0005798;Golgi-associated vesicle;1.79643771834865e-05!GO:0044440;endosomal part;1.79643771834865e-05!GO:0010008;endosome membrane;1.79643771834865e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.20667252728328e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.20667252728328e-05!GO:0051028;mRNA transport;2.22089197291928e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.58320688301014e-05!GO:0016310;phosphorylation;2.9507515939367e-05!GO:0006754;ATP biosynthetic process;2.95574691698583e-05!GO:0006753;nucleoside phosphate metabolic process;2.95574691698583e-05!GO:0016568;chromatin modification;3.40626050265523e-05!GO:0005819;spindle;3.50890645439366e-05!GO:0006084;acetyl-CoA metabolic process;3.5591188480834e-05!GO:0031252;leading edge;3.60738877773986e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.62088101483714e-05!GO:0016491;oxidoreductase activity;3.62913741100658e-05!GO:0031324;negative regulation of cellular metabolic process;3.7861609871505e-05!GO:0006793;phosphorus metabolic process;3.88214873882415e-05!GO:0006796;phosphate metabolic process;3.88214873882415e-05!GO:0006613;cotranslational protein targeting to membrane;4.02970721506709e-05!GO:0009117;nucleotide metabolic process;4.30961540513543e-05!GO:0005791;rough endoplasmic reticulum;4.34258899614922e-05!GO:0043623;cellular protein complex assembly;4.51473528699292e-05!GO:0046467;membrane lipid biosynthetic process;5.56870708243051e-05!GO:0030867;rough endoplasmic reticulum membrane;5.77211886077146e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.32317653665454e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.74765515124381e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.17279067177081e-05!GO:0065004;protein-DNA complex assembly;7.83226701057212e-05!GO:0019899;enzyme binding;7.99864135822038e-05!GO:0007051;spindle organization and biogenesis;8.37370874222295e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42395622405305e-05!GO:0008361;regulation of cell size;8.58757944035372e-05!GO:0005761;mitochondrial ribosome;8.69858721053582e-05!GO:0000313;organellar ribosome;8.69858721053582e-05!GO:0016049;cell growth;9.77505447780736e-05!GO:0046474;glycerophospholipid biosynthetic process;0.000107211557056046!GO:0046489;phosphoinositide biosynthetic process;0.000107395259000177!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000110491820451246!GO:0015399;primary active transmembrane transporter activity;0.000110491820451246!GO:0007040;lysosome organization and biogenesis;0.000112395790722888!GO:0032446;protein modification by small protein conjugation;0.000113296255872706!GO:0006333;chromatin assembly or disassembly;0.000115253208319351!GO:0005905;coated pit;0.000119077682468593!GO:0006752;group transfer coenzyme metabolic process;0.000130513877812983!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000134714445606954!GO:0043069;negative regulation of programmed cell death;0.000140911291690393!GO:0008610;lipid biosynthetic process;0.000148734751959998!GO:0004576;oligosaccharyl transferase activity;0.000156345903085492!GO:0000785;chromatin;0.000158604842523115!GO:0016853;isomerase activity;0.000168936671771222!GO:0007010;cytoskeleton organization and biogenesis;0.00016903970238703!GO:0016859;cis-trans isomerase activity;0.000169358928362116!GO:0016567;protein ubiquitination;0.000171838665946375!GO:0009108;coenzyme biosynthetic process;0.000175146434299176!GO:0001558;regulation of cell growth;0.000180357616021731!GO:0019867;outer membrane;0.00018204462308375!GO:0009892;negative regulation of metabolic process;0.000190637596692756!GO:0045259;proton-transporting ATP synthase complex;0.000206067957565201!GO:0031968;organelle outer membrane;0.000209382550544001!GO:0043066;negative regulation of apoptosis;0.000209471151966797!GO:0030532;small nuclear ribonucleoprotein complex;0.000210339270421366!GO:0003690;double-stranded DNA binding;0.000217459636664408!GO:0005048;signal sequence binding;0.00021980237175441!GO:0007050;cell cycle arrest;0.00021980237175441!GO:0005839;proteasome core complex (sensu Eukaryota);0.000221676357470601!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222797482231777!GO:0008186;RNA-dependent ATPase activity;0.000229931846502135!GO:0008250;oligosaccharyl transferase complex;0.000254528328654262!GO:0045454;cell redox homeostasis;0.000264155997527632!GO:0006612;protein targeting to membrane;0.000276483492404177!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000276785052888924!GO:0005769;early endosome;0.000276785052888924!GO:0005667;transcription factor complex;0.000293028997883734!GO:0006364;rRNA processing;0.000302563060956844!GO:0016363;nuclear matrix;0.000303451951228241!GO:0007033;vacuole organization and biogenesis;0.000319920941622595!GO:0000151;ubiquitin ligase complex;0.000323238950593785!GO:0004177;aminopeptidase activity;0.000330700083809502!GO:0044420;extracellular matrix part;0.000347868861594165!GO:0030036;actin cytoskeleton organization and biogenesis;0.000348715316537961!GO:0006916;anti-apoptosis;0.0003519727421393!GO:0000245;spliceosome assembly;0.000358097312362185!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000358966799278045!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000396536937236211!GO:0043067;regulation of programmed cell death;0.000412598635305531!GO:0042981;regulation of apoptosis;0.000428367205657646!GO:0044262;cellular carbohydrate metabolic process;0.000468572940151458!GO:0050789;regulation of biological process;0.000488094582202247!GO:0003713;transcription coactivator activity;0.000511957349710276!GO:0016072;rRNA metabolic process;0.000533316522172035!GO:0046519;sphingoid metabolic process;0.000539814119576087!GO:0016197;endosome transport;0.000609717968310089!GO:0004298;threonine endopeptidase activity;0.000612635039181787!GO:0004004;ATP-dependent RNA helicase activity;0.000667944752881656!GO:0051329;interphase of mitotic cell cycle;0.000680607211627545!GO:0015980;energy derivation by oxidation of organic compounds;0.000763636338181!GO:0005581;collagen;0.000769275250133687!GO:0018196;peptidyl-asparagine modification;0.00080292866375134!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00080292866375134!GO:0030663;COPI coated vesicle membrane;0.000804006903198505!GO:0030126;COPI vesicle coat;0.000804006903198505!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000830489000862561!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000830489000862561!GO:0016779;nucleotidyltransferase activity;0.000880412459475071!GO:0030176;integral to endoplasmic reticulum membrane;0.000900837832699516!GO:0006643;membrane lipid metabolic process;0.000901248391103061!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000918534561526175!GO:0043492;ATPase activity, coupled to movement of substances;0.000969554786322244!GO:0030133;transport vesicle;0.00103382828406284!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00107258017243184!GO:0006672;ceramide metabolic process;0.00111620694780254!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00114490350031657!GO:0030134;ER to Golgi transport vesicle;0.00114955992031802!GO:0006509;membrane protein ectodomain proteolysis;0.00122800903896922!GO:0033619;membrane protein proteolysis;0.00122800903896922!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00126983034360991!GO:0003924;GTPase activity;0.00135781873848546!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.001385510611008!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00146911603978633!GO:0051325;interphase;0.00153723997880541!GO:0006650;glycerophospholipid metabolic process;0.00154400453510071!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00164221250361936!GO:0006505;GPI anchor metabolic process;0.00168967222223462!GO:0016481;negative regulation of transcription;0.0017063121302722!GO:0006506;GPI anchor biosynthetic process;0.00171952929092274!GO:0005874;microtubule;0.00174312411738139!GO:0016563;transcription activator activity;0.00185350947452427!GO:0000775;chromosome, pericentric region;0.00190800533210558!GO:0006497;protein amino acid lipidation;0.00190852884037889!GO:0007052;mitotic spindle organization and biogenesis;0.002005225216614!GO:0006891;intra-Golgi vesicle-mediated transport;0.00202400524764357!GO:0051252;regulation of RNA metabolic process;0.00208452397794111!GO:0007160;cell-matrix adhesion;0.00209405899727423!GO:0000075;cell cycle checkpoint;0.00209683262961555!GO:0007005;mitochondrion organization and biogenesis;0.00213661901106501!GO:0030029;actin filament-based process;0.00221777285751987!GO:0005741;mitochondrial outer membrane;0.00228200210985684!GO:0006334;nucleosome assembly;0.00248135013047066!GO:0051168;nuclear export;0.00255439290969762!GO:0000059;protein import into nucleus, docking;0.00260866542691403!GO:0051920;peroxiredoxin activity;0.00269919723484939!GO:0005637;nuclear inner membrane;0.00270191677937592!GO:0008047;enzyme activator activity;0.00270668351894521!GO:0031589;cell-substrate adhesion;0.00281904744839016!GO:0030137;COPI-coated vesicle;0.00281904744839016!GO:0005774;vacuolar membrane;0.00284361192670444!GO:0006261;DNA-dependent DNA replication;0.00286726593941129!GO:0030127;COPII vesicle coat;0.00289932703905497!GO:0005885;Arp2/3 protein complex;0.00289932703905497!GO:0012507;ER to Golgi transport vesicle membrane;0.00289932703905497!GO:0051427;hormone receptor binding;0.00293604072284427!GO:0030384;phosphoinositide metabolic process;0.00297121076037618!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00317800700008619!GO:0048522;positive regulation of cellular process;0.00327975350523872!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00351046231834003!GO:0042158;lipoprotein biosynthetic process;0.00353290953765815!GO:0006414;translational elongation;0.00413140595256774!GO:0006091;generation of precursor metabolites and energy;0.0041781459525387!GO:0006402;mRNA catabolic process;0.00424092713059569!GO:0031497;chromatin assembly;0.00441107230256655!GO:0003756;protein disulfide isomerase activity;0.00449115919996012!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00449115919996012!GO:0043021;ribonucleoprotein binding;0.00467055660283236!GO:0006892;post-Golgi vesicle-mediated transport;0.00480776770324338!GO:0035257;nuclear hormone receptor binding;0.00500494154045611!GO:0003684;damaged DNA binding;0.00519672125388385!GO:0003729;mRNA binding;0.00527664246504637!GO:0043284;biopolymer biosynthetic process;0.00562953455340986!GO:0006984;ER-nuclear signaling pathway;0.00593281315297035!GO:0008484;sulfuric ester hydrolase activity;0.00594591314496495!GO:0019752;carboxylic acid metabolic process;0.00594751665433826!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0059819961147192!GO:0000776;kinetochore;0.00603939294602143!GO:0016044;membrane organization and biogenesis;0.00614152227594432!GO:0040008;regulation of growth;0.00627905170792934!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00636977905785164!GO:0007243;protein kinase cascade;0.00652546711964954!GO:0009967;positive regulation of signal transduction;0.00652546711964954!GO:0031124;mRNA 3'-end processing;0.00696599041024041!GO:0006950;response to stress;0.00697474508026703!GO:0006082;organic acid metabolic process;0.00699748333633608!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0071651205887966!GO:0016126;sterol biosynthetic process;0.00717994570608996!GO:0030132;clathrin coat of coated pit;0.0072921614119524!GO:0050662;coenzyme binding;0.00748374494329165!GO:0001527;microfibril;0.0076012767822648!GO:0003678;DNA helicase activity;0.00774042240346643!GO:0044437;vacuolar part;0.00775057475816335!GO:0030027;lamellipodium;0.00792626564464343!GO:0019843;rRNA binding;0.00800973258310681!GO:0009165;nucleotide biosynthetic process;0.00810383475172126!GO:0017166;vinculin binding;0.00825995930145861!GO:0015923;mannosidase activity;0.00844111806369174!GO:0030659;cytoplasmic vesicle membrane;0.00885963721522113!GO:0044255;cellular lipid metabolic process;0.00888892770821716!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00891083274018275!GO:0007093;mitotic cell cycle checkpoint;0.00895171270649477!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00944872317042634!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00952011672007921!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00952011672007921!GO:0008139;nuclear localization sequence binding;0.00960410119808627!GO:0005765;lysosomal membrane;0.0098143760580536!GO:0006289;nucleotide-excision repair;0.00985918786610628!GO:0030118;clathrin coat;0.00992107065040909!GO:0008094;DNA-dependent ATPase activity;0.0100471653654875!GO:0004287;prolyl oligopeptidase activity;0.0101631841432393!GO:0003682;chromatin binding;0.0103232690557029!GO:0001726;ruffle;0.0106578338988826!GO:0022408;negative regulation of cell-cell adhesion;0.0107906566042777!GO:0001872;zymosan binding;0.0108400149084088!GO:0001878;response to yeast;0.0108400149084088!GO:0048471;perinuclear region of cytoplasm;0.0112734849437254!GO:0044433;cytoplasmic vesicle part;0.0113769590360966!GO:0005096;GTPase activator activity;0.0114001427112048!GO:0048500;signal recognition particle;0.0123168870150144!GO:0004674;protein serine/threonine kinase activity;0.0123788296338428!GO:0015631;tubulin binding;0.0124160867981787!GO:0006644;phospholipid metabolic process;0.0125207564283749!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0130228788922245!GO:0030145;manganese ion binding;0.0130690794788492!GO:0006665;sphingolipid metabolic process;0.0131637199155259!GO:0007034;vacuolar transport;0.0135994889627657!GO:0007041;lysosomal transport;0.0138596079214114!GO:0030658;transport vesicle membrane;0.0140160493083746!GO:0051128;regulation of cellular component organization and biogenesis;0.0140915084817841!GO:0032200;telomere organization and biogenesis;0.0141864169185439!GO:0000723;telomere maintenance;0.0141864169185439!GO:0000030;mannosyltransferase activity;0.0146536692917986!GO:0003923;GPI-anchor transamidase activity;0.0150250327529376!GO:0016255;attachment of GPI anchor to protein;0.0150250327529376!GO:0042765;GPI-anchor transamidase complex;0.0150250327529376!GO:0019798;procollagen-proline dioxygenase activity;0.0155073342960992!GO:0001953;negative regulation of cell-matrix adhesion;0.016517024606609!GO:0033559;unsaturated fatty acid metabolic process;0.0167882614747989!GO:0006636;unsaturated fatty acid biosynthetic process;0.0167882614747989!GO:0065009;regulation of a molecular function;0.0170532691647564!GO:0006302;double-strand break repair;0.0170725329905062!GO:0001952;regulation of cell-matrix adhesion;0.0171744622684759!GO:0007017;microtubule-based process;0.0173732496112875!GO:0046483;heterocycle metabolic process;0.0179404750534505!GO:0000922;spindle pole;0.0180993268359587!GO:0051287;NAD binding;0.0182627297963478!GO:0030149;sphingolipid catabolic process;0.0186461654822436!GO:0004563;beta-N-acetylhexosaminidase activity;0.0187461141191159!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0196137596075451!GO:0000049;tRNA binding;0.0196558024720586!GO:0031543;peptidyl-proline dioxygenase activity;0.0197848133852123!GO:0051348;negative regulation of transferase activity;0.0198867806612654!GO:0005586;collagen type III;0.0199174257666698!GO:0003746;translation elongation factor activity;0.020064252567342!GO:0000287;magnesium ion binding;0.0201188528278738!GO:0006818;hydrogen transport;0.0202977822036335!GO:0012506;vesicle membrane;0.0203869843818528!GO:0008092;cytoskeletal protein binding;0.0203975857535199!GO:0006378;mRNA polyadenylation;0.0204271150829593!GO:0051270;regulation of cell motility;0.0208143919275971!GO:0031301;integral to organelle membrane;0.0208452978475831!GO:0006516;glycoprotein catabolic process;0.0208850925445243!GO:0043488;regulation of mRNA stability;0.0211146358040651!GO:0043487;regulation of RNA stability;0.0211146358040651!GO:0031418;L-ascorbic acid binding;0.0211732846676631!GO:0031901;early endosome membrane;0.0212793563258723!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0214923412638153!GO:0015992;proton transport;0.0216460086483586!GO:0065007;biological regulation;0.0217478142288398!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.021806638217713!GO:0019222;regulation of metabolic process;0.0219529640952096!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0222046009933518!GO:0005832;chaperonin-containing T-complex;0.0222701663464962!GO:0031123;RNA 3'-end processing;0.022596016736596!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.022596016736596!GO:0045047;protein targeting to ER;0.022596016736596!GO:0016860;intramolecular oxidoreductase activity;0.0227764844957944!GO:0006607;NLS-bearing substrate import into nucleus;0.0227905389779608!GO:0004228;gelatinase A activity;0.0232147922397472!GO:0001955;blood vessel maturation;0.0232147922397472!GO:0000781;chromosome, telomeric region;0.0235503088626196!GO:0001573;ganglioside metabolic process;0.0240682644725215!GO:0008033;tRNA processing;0.0242081084284545!GO:0016408;C-acyltransferase activity;0.0242583330390098!GO:0000082;G1/S transition of mitotic cell cycle;0.0243703765442693!GO:0031902;late endosome membrane;0.0244669296995838!GO:0006695;cholesterol biosynthetic process;0.0244669296995838!GO:0048037;cofactor binding;0.0245365308384332!GO:0005520;insulin-like growth factor binding;0.0248151117828995!GO:0033673;negative regulation of kinase activity;0.0248151117828995!GO:0006469;negative regulation of protein kinase activity;0.0248151117828995!GO:0030521;androgen receptor signaling pathway;0.0248591757587109!GO:0006310;DNA recombination;0.0256685329302041!GO:0005876;spindle microtubule;0.0264476689946571!GO:0008147;structural constituent of bone;0.0265797170861247!GO:0008312;7S RNA binding;0.0265797170861247!GO:0030968;unfolded protein response;0.0271156989475798!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0272904662620453!GO:0030660;Golgi-associated vesicle membrane;0.0273450052662461!GO:0031072;heat shock protein binding;0.0275691222966738!GO:0016301;kinase activity;0.0275864579904174!GO:0005657;replication fork;0.0276489088889064!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0276489088889064!GO:0006401;RNA catabolic process;0.0276489088889064!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0277113858066265!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0277113858066265!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0277113858066265!GO:0051539;4 iron, 4 sulfur cluster binding;0.0277611383837187!GO:0007162;negative regulation of cell adhesion;0.0278873521351199!GO:0016125;sterol metabolic process;0.0279397439582143!GO:0030119;AP-type membrane coat adaptor complex;0.0279482078841533!GO:0000339;RNA cap binding;0.0286373045271728!GO:0005975;carbohydrate metabolic process;0.0288129297774991!GO:0045792;negative regulation of cell size;0.02924936516568!GO:0001516;prostaglandin biosynthetic process;0.0300745920716711!GO:0046457;prostanoid biosynthetic process;0.0300745920716711!GO:0005525;GTP binding;0.0307627578983957!GO:0000096;sulfur amino acid metabolic process;0.0307627578983957!GO:0030518;steroid hormone receptor signaling pathway;0.0308071276530003!GO:0005762;mitochondrial large ribosomal subunit;0.0308490422616939!GO:0000315;organellar large ribosomal subunit;0.0308490422616939!GO:0030032;lamellipodium biogenesis;0.0308490422616939!GO:0030433;ER-associated protein catabolic process;0.0313145683240741!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0313145683240741!GO:0005862;muscle thin filament tropomyosin;0.0315666683430501!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0317653291202207!GO:0003711;transcription elongation regulator activity;0.0317653291202207!GO:0030308;negative regulation of cell growth;0.0319064498537258!GO:0007088;regulation of mitosis;0.0320765820728399!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0322259616207128!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0322259616207128!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0331388692120702!GO:0022890;inorganic cation transmembrane transporter activity;0.0331388692120702!GO:0032906;transforming growth factor-beta2 production;0.0331388692120702!GO:0032909;regulation of transforming growth factor-beta2 production;0.0331388692120702!GO:0004003;ATP-dependent DNA helicase activity;0.034241475028288!GO:0006520;amino acid metabolic process;0.0344057618561634!GO:0005784;translocon complex;0.0353487979456622!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.03550854758371!GO:0005869;dynactin complex;0.0356960756508152!GO:0030131;clathrin adaptor complex;0.0366323133490616!GO:0043433;negative regulation of transcription factor activity;0.0366323133490616!GO:0042802;identical protein binding;0.0377027410889137!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0381548418845567!GO:0042157;lipoprotein metabolic process;0.0382078029079321!GO:0035258;steroid hormone receptor binding;0.0387762089246476!GO:0019377;glycolipid catabolic process;0.0391769967316543!GO:0007167;enzyme linked receptor protein signaling pathway;0.039380119878271!GO:0031529;ruffle organization and biogenesis;0.0398698313864089!GO:0003899;DNA-directed RNA polymerase activity;0.0410235770069143!GO:0007030;Golgi organization and biogenesis;0.0411055726518792!GO:0007004;telomere maintenance via telomerase;0.0411055726518792!GO:0031625;ubiquitin protein ligase binding;0.0414329882194804!GO:0008238;exopeptidase activity;0.0416283802163743!GO:0048518;positive regulation of biological process;0.0418520564769113!GO:0048487;beta-tubulin binding;0.0421055953658902!GO:0050750;low-density lipoprotein receptor binding;0.0423912041631342!GO:0006405;RNA export from nucleus;0.0424738324395661!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0430147185552037!GO:0008022;protein C-terminus binding;0.0438417616842786!GO:0051059;NF-kappaB binding;0.0442322733788701!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0443620028285422!GO:0004784;superoxide dismutase activity;0.0443620028285422!GO:0005604;basement membrane;0.0443913262985947!GO:0000209;protein polyubiquitination;0.0444452448262261!GO:0051271;negative regulation of cell motility;0.0446725380116299!GO:0005684;U2-dependent spliceosome;0.0455252388813495!GO:0006518;peptide metabolic process;0.0459138360249536!GO:0005100;Rho GTPase activator activity;0.0459795913629939!GO:0004559;alpha-mannosidase activity;0.0459795913629939!GO:0019511;peptidyl-proline hydroxylation;0.0465879304922615!GO:0018208;peptidyl-proline modification;0.0465879304922615!GO:0019471;4-hydroxyproline metabolic process;0.0465879304922615!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0465879304922615!GO:0006693;prostaglandin metabolic process;0.0469614002545428!GO:0006692;prostanoid metabolic process;0.0469614002545428!GO:0044452;nucleolar part;0.0474617011052281!GO:0051052;regulation of DNA metabolic process;0.0477564912347548!GO:0001666;response to hypoxia;0.0478772286522744!GO:0005901;caveola;0.0478772286522744!GO:0007059;chromosome segregation;0.0479882876613035!GO:0008234;cysteine-type peptidase activity;0.0480353414114551!GO:0035035;histone acetyltransferase binding;0.0483157567787568!GO:0006897;endocytosis;0.048665722673697!GO:0010324;membrane invagination;0.048665722673697!GO:0006508;proteolysis;0.048665722673697!GO:0006352;transcription initiation;0.048665722673697!GO:0046914;transition metal ion binding;0.0489967795522158!GO:0006740;NADPH regeneration;0.0494166641165716!GO:0006098;pentose-phosphate shunt;0.0494166641165716!GO:0006541;glutamine metabolic process;0.0496694663845792
|sample_id=14311
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14311-155C9;search_select_hide=table117:FF:14311-155C9
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12400
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage19 years old adult
sexfemale
age19
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005828
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12400 CAGE DRX008034 DRR008906
Accession ID Hg19

Library idBAMCTSS
CNhs12400 DRZ000331 DRZ001716
Accession ID Hg38

Library idBAMCTSS
CNhs12400 DRZ011681 DRZ013066
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005828
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GGTAGC sRNA-Seq DRX036988 DRR041354
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GGTAGC DRZ006996


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.329
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.269
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.518
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.116
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.769
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0473
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.11
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.181
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.135
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.109
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.233
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.11
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0387
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0914
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.11
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0466
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.131
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.197
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.125
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.912
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.942
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.7
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.129
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.11
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.347
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0.11
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12400

Jaspar motifP-value
MA0002.20.00303
MA0003.10.85
MA0004.10.31
MA0006.10.881
MA0007.10.496
MA0009.10.159
MA0014.10.424
MA0017.10.00314
MA0018.20.251
MA0019.10.659
MA0024.10.739
MA0025.10.0403
MA0027.10.957
MA0028.10.764
MA0029.10.526
MA0030.10.397
MA0031.10.139
MA0035.20.059
MA0038.10.471
MA0039.20.345
MA0040.10.885
MA0041.10.565
MA0042.10.549
MA0043.10.128
MA0046.10.0544
MA0047.20.694
MA0048.10.181
MA0050.10.16
MA0051.10.276
MA0052.10.133
MA0055.10.764
MA0057.10.472
MA0058.10.252
MA0059.10.0679
MA0060.10.296
MA0061.17.72175e-4
MA0062.20.189
MA0065.23.8354e-4
MA0066.10.418
MA0067.10.366
MA0068.10.921
MA0069.10.487
MA0070.10.454
MA0071.10.189
MA0072.10.205
MA0073.10.752
MA0074.10.765
MA0076.10.456
MA0077.10.485
MA0078.10.691
MA0079.20.918
MA0080.21.74864e-9
MA0081.10.0395
MA0083.10.233
MA0084.10.159
MA0087.10.535
MA0088.10.326
MA0090.10.00508
MA0091.10.557
MA0092.10.438
MA0093.10.39
MA0099.20.00284
MA0100.10.892
MA0101.10.0051
MA0102.20.488
MA0103.13.41037e-4
MA0104.20.0316
MA0105.14.93609e-6
MA0106.10.931
MA0107.10.00316
MA0108.20.774
MA0111.10.344
MA0112.20.273
MA0113.10.701
MA0114.10.0061
MA0115.10.0272
MA0116.10.393
MA0117.10.637
MA0119.10.844
MA0122.10.394
MA0124.10.0107
MA0125.10.293
MA0131.10.642
MA0135.10.437
MA0136.11.51923e-9
MA0137.20.544
MA0138.20.0915
MA0139.10.816
MA0140.10.131
MA0141.10.0168
MA0142.10.0543
MA0143.10.517
MA0144.10.804
MA0145.10.333
MA0146.10.058
MA0147.10.12
MA0148.10.219
MA0149.10.214
MA0150.10.0325
MA0152.10.0412
MA0153.10.677
MA0154.10.0796
MA0155.10.675
MA0156.10.00197
MA0157.10.0903
MA0159.10.25
MA0160.10.00306
MA0162.10.287
MA0163.10.833
MA0164.10.711
MA0258.10.131
MA0259.10.379



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12400

Novel motifP-value
10.0759
100.338
1000.929
1010.405
1020.358
1030.372
1040.994
1050.0536
1060.0131
1070.607
1080.591
1090.119
110.145
1100.803
1110.0193
1120.42
1130.0483
1140.103
1150.098
1160.912
1170.354
1180.44
1190.0738
120.416
1200.965
1210.93
1220.061
1230.00559
1240.0348
1250.174
1260.203
1270.0217
1280.0424
1290.213
130.335
1300.974
1310.893
1320.503
1330.853
1340.866
1350.312
1360.896
1370.564
1380.419
1390.175
140.348
1400.485
1410.783
1420.649
1430.0394
1440.809
1450.309
1460.459
1470.191
1480.0503
1490.279
150.0716
1500.82
1510.21
1520.173
1530.328
1540.902
1550.0406
1560.119
1570.562
1580.0583
1590.937
160.917
1600.0456
1610.742
1620.949
1630.718
1640.387
1650.724
1660.036
1670.192
1680.207
1690.425
170.461
180.553
190.602
20.624
200.864
210.899
220.662
230.756
240.199
250.0994
260.971
270.342
280.58
290.694
30.301
300.745
310.806
326.61488e-10
330.604
340.741
350.27
360.0137
370.404
380.225
390.919
40.135
400.0525
410.0442
420.146
430.234
440.792
450.48
460.323
470.155
480.402
490.0481
50.373
500.943
510.28
520.351
530.144
540.439
550.679
560.243
570.364
580.123
590.352
60.833
600.152
610.22
620.0609
630.488
640.182
650.255
660.244
670.814
680.584
690.589
70.0864
700.0575
710.398
720.355
730.201
740.422
750.287
760.701
770.717
780.0248
790.0714
80.204
800.187
810.431
820.0906
830.0537
840.558
850.391
860.784
870.838
880.522
890.652
90.9
900.0337
910.538
920.55
930.286
940.127
950.104
960.0426
970.258
980.00615
990.501



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12400


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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