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{{f5samples
{{f5samples
|id=FF:14332-155F3
|DRA_sample_Accession=CAGE@SAMD00005544
|name=Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005544
|sample_id=14332
|accession_numbers=CAGE;DRX008033;DRR008905;DRZ000330;DRZ001715;DRZ011680;DRZ013065
|rna_tube_id=155F3
|accession_numbers_RNASeq=sRNA-Seq;DRX036985;DRR041351;DRZ006993
|rna_box=155
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|rna_position=F3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|sample_cell_lot=lot:0000099514
|sample_cell_catalog=7F3048
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=19 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=19
|sample_ethnicity=B
|rna_rin=
|rna_od260/230=2.01
|rna_od260/280=2.06
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=nuclear RNA
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=6.85908
|rna_concentration=0.25404
|sample_note=
|profile_hcage=CNhs12581,LSID917,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10010,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002547,CL:1000306
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000415,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001062,UBERON:0001637,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004663,UBERON:0004664,UBERON:0004872,UBERON:0004923,UBERON:0005423,UBERON:0005734,UBERON:0005742,UBERON:0006965,UBERON:0007240,UBERON:0007500,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000408,FF:0000350,FF:0000058,FF:0000406,FF:0000666
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.96!238.34!OSR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!46.61!ZBTB38;;chr6:134210243..134210257,+!p1@TCF21!1.53!32.57!TCF21;;chr18:19749541..19749557,+!p1@GATA6!1.48!89.11!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.26!GATA6;;chr1:158985493..158985535,+!p4@IFI16!1.28!27.28!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.24!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.27!30.98!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.23!16.02!SOX17;;chr12:66218598..66218645,+!p2@HMGA2!1.21!69.12!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.08!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.19!134.79!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!1.19!14.43!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.21!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.16!13.51!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!1.15!124.60!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!1.14!34.43!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.14!22.38!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!1.13!64.75!HIF1A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.31!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.05!HAND2;;chr2:208030647..208030689,-!p1@KLF7!1.11!98.91!KLF7;;chr16:67881588..67881612,-!p2@CENPT!1.11!16.29!CENPT;;chr21:36260295..36260310,-!p3@RUNX1!1.09!18.40!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!1.09!17.21!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.07!146.44!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.84!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!1.05!22.64!ARID5B;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.96!BMP2;;chr11:65686732..65686756,+!p2@DRAP1!0.99!37.60!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!14.96!CREB3L1;;chr15:67418177..67418204,+!p9@SMAD3!0.98!8.47!SMAD3;;chr19:45971246..45971265,+!p1@FOSB!0.97!160.88!FOSB;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!98.51!PLAGL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.33!ZFPM2;;chr8:25902876..25902936,-!p1@EBF2!0.96!8.21!EBF2;;chr8:72756637..72756664,-!p3@MSC!0.95!9.14!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.81!IFI16;;chr7:64467057..64467078,-!p1@ZNF117!0.93!144.72!ZNF117;;chr8:93074803..93074845,-!p1@RUNX1T1!0.93!7.41!RUNX1T1;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.59!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.08!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.28!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.31!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.27!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.54!NCOA7;;chr6:144289132..144289134,-!p3@PLAGL1!0.90!16.55!PLAGL1;;chr9:128510454..128510469,+!p3@PBX3!0.90!9.14!PBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.90!6.89!ZNF560;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.75!BNC2;;chr10:63809134..63809145,+!p6@ARID5B!0.88!15.62!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.87!29.66!ZBTB20;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.28!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.87!6.49!HOXB3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!30.19!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.86!6.22!HAND2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.22!HOXC4;;chr19:52598958..52599026,-!p1@ZNF841!0.85!61.57!ZNF841;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.82!ZBTB38;;chr7:86782094..86782108,+!p5@DMTF1!0.85!10.06!DMTF1;;chr2:66662281..66662308,+!p1@MEIS1!0.84!21.85!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.96!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.55!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.83!6.62!TFAP2A;;chr1:59249688..59249703,-!p3@JUN!0.82!36.28!JUN;;chr3:187463179..187463201,-!p2@BCL6!0.82!24.76!BCL6;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.56!TBX20;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!310.37!NFKBIZ;;chr2:28618532..28618610,+!p4@FOSL2!0.81!9.80!FOSL2;;chr21:36260343..36260402,-!p6@RUNX1!0.81!9.14!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.81!9.00!PAWR;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.21!SATB2;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.41!EBF1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.43!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.81!5.43!ZBTB47;;chrX:128657457..128657475,-!p1@SMARCA1!0.80!66.73!SMARCA1;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chrX:77041657..77041668,-!p2@ATRX!0.79!11.12!ATRX;;chr7:113726357..113726443,+!p1@FOXP2!0.79!9.40!FOXP2;;chr5:72744445..72744466,-!p2@FOXD1!0.79!8.87!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.87!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.79!5.16!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.63!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.78!12.71!NFATC4;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr4:149365827..149365870,-!p5@NR3C2!0.78!5.03!NR3C2;;chr7:4815238..4815327,+!p1@KIAA0415!0.77!117.58!AP5Z1;;chr9:16870710..16870763,-!p1@BNC2!0.77!8.87!BNC2;;chr10:63809090..63809097,+!p7@ARID5B!0.77!7.02!ARID5B;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.09!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.90!GATA4;;chr1:170632250..170632277,+!p7@PRRX1!0.77!4.90!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!233.70!STAT2;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.27!RUNX1;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.25!IFI16;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.09!FOXF1;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr16:67881647..67881663,-!p3@CENPT!0.76!4.77!CENPT;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.75!13.77!ZFP112;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.15!HOXB4;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.56!FOXD1;;chr2:66662510..66662521,+!p6@MEIS1!0.75!4.63!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.74!730.63!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.54!ARID5B;;chr1:249153268..249153298,-!p1@ZNF692!0.74!26.48!ZNF692;;chr15:67418047..67418093,+!p4@SMAD3!0.74!5.83!SMAD3;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.50!OSR1;;chr2:66662396..66662407,+!p4@MEIS1!0.74!4.50!MEIS1;;chr3:141121871..141121885,+!p13@ZBTB38!0.73!4.37!ZBTB38;;chr12:72056800..72056834,+!p1@THAP2!0.72!5.96!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.72!5.16!IFI16;;chr3:141087339..141087387,+!p2@ZBTB38!0.71!47.40!ZBTB38;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.54!CREB1;;chr2:208030488..208030551,-!p3@KLF7!0.71!16.42!KLF7;;chrX:134478706..134478736,+!p1@ZNF449!0.71!14.96!ZNF449;;chr21:36259445..36259519,-!p4@RUNX1!0.71!12.71!RUNX1;;chr19:52956798..52956843,+!p1@ZNF578!0.71!8.87!ZNF578;;chr20:25677399..25677433,-!p3@ZNF337!0.71!8.47!ZNF337;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.94!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.43!STAT1;;chr4:149363494..149363543,-!p1@NR3C2!0.71!4.10!NR3C2;;chr8:72755987..72756002,-!p7@MSC!0.71!4.10!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.70!12.58!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!7.02!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.69!PRRX1;;chr7:1577111..1577132,+!p4@MAFK!0.70!4.63!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.97!RFX8;;chr13:45150455..45150472,-!p8@TSC22D1!0.70!3.97!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.69!8.87!VDR;;chr12:66218378..66218401,+!p6@HMGA2!0.69!6.36!HMGA2;;chr17:46621101..46621143,-!p7@HOXB2!0.69!5.43!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.68!235.42!STAT1;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.95!TSC22D1;;chr8:77593474..77593612,+!p1@ZFHX4!0.68!18.27!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.35!STAT6;;chr8:72756267..72756296,-!p4@MSC!0.68!5.83!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.68!4.24!SMAD3;;chr21:36260325..36260341,-!p14@RUNX1!0.68!3.84!RUNX1;;chr8:49833948..49833973,-!p2@SNAI2!0.67!27.01!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.67!12.98!AHRR;;chr7:17338266..17338282,+!p1@AHR!0.66!45.02!AHR;;chr19:52901094..52901134,+!p1@ZNF528!0.66!27.01!ZNF528;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.84!TWIST2;;chr12:133707172..133707202,+!p2@ZNF10!0.66!9.00!ZNF10;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.66!8.08!ZNF117;;chr19:57019215..57019250,+!p1@ZNF471!0.66!5.69!ZNF471;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.50!TBX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.66!3.58!HOXC5;;chr6:126112074..126112144,+!p1@NCOA7!0.65!54.29!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.65!38.66!IFI16;;chr5:138609782..138609826,+!p5@MATR3!0.65!26.08!MATR3;;chr6:126102292..126102329,+!p3@NCOA7!0.65!12.98!NCOA7;;chr18:3451646..3451691,+!p3@TGIF1!0.65!10.46!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.30!HMGA2;;chr18:19750951..19750980,+!p10@GATA6!0.65!3.44!GATA6;;chr22:21771656..21771662,+!p1@HIC2!0.65!3.44!HIC2;;chr2:185463247..185463263,+!p1@ZNF804A!0.64!6.49!ZNF804A;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.30!NFIX;;chr6:126240463..126240489,+!p6@NCOA7!0.64!3.84!NCOA7;;chr2:231191875..231191918,+!p1@SP140L!0.63!37.47!SP140L;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.63!23.97!SNAPC4;;chr19:44952635..44952668,-!p1@ZNF229!0.63!19.07!ZNF229;;chr2:66662249..66662267,+!p2@MEIS1!0.63!14.70!MEIS1;;chr19:12721790..12721810,+!p2@ZNF791!0.63!10.33!ZNF791;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr16:67198633..67198671,+!p1@HSF4!0.63!3.31!HSF4;;chr18:19749353..19749367,+!p4@GATA6!0.63!3.31!GATA6;;chr7:1577076..1577095,+!p5@MAFK!0.63!3.31!MAFK;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.02!MLLT11;;chr8:182424..182462,+!p1@ZNF596!0.62!9.40!ZNF596;;chr5:139487608..139487663,+!p3@PURA!0.62!7.68!PURA;;chr9:4299959..4299974,-!p4@GLIS3!0.62!5.43!GLIS3;;chr7:99156011..99156036,+!p7@ZNF655!0.62!3.84!ZNF655;;chr9:14314476..14314487,-!p9@NFIB!0.62!3.18!NFIB;;chr19:22193731..22193751,-!p1@ZNF208!0.62!3.18!ZNF208;;chr21:30671690..30671762,+!p2@BACH1!0.61!12.18!BACH1;;chr19:52391147..52391218,-!p1@ZNF577!0.61!10.99!ZNF577;;chr8:72756063..72756125,-!p1@MSC!0.61!7.02!MSC;;chr19:44598560..44598576,+!p3@ZNF224!0.61!5.43!ZNF224;;chr7:106809470..106809481,+!p2@HBP1!0.61!4.63!HBP1;;chr1:170633262..170633285,+!p3@PRRX1!0.61!3.58!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.05!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.61!3.05!RUNX1T1;;chrX:153305787..15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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg38.nobarcode.ctss.bed.gz
|id=FF:14332-155F3
|is_a=EFO:0002091;;FF:0000666
|is_obsolete=
|library_id=CNhs12581
|library_id_phase_based=2:CNhs12581
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14332
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTGGCC.14332
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14332
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTGGCC.14332
|name=Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12581,LSID917,release012,COMPLETED
|profile_rnaseq=
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|rna_box=155
|rna_catalog_number=N/A
|rna_concentration=0.25404
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.01
|rna_od260/280=2.06
|rna_position=F3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=155F3
|rna_weight_ug=6.85908
|rnaseq_library_id=SRhi10010.GTGGCC
|sample_age=19
|sample_category=fractionations and perturbations
|sample_cell_catalog=7F3048
|sample_cell_line=
|sample_cell_lot=lot:0000099514
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=19 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=B
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.07958732605306e-205!GO:0005737;cytoplasm;1.14390559722004e-173!GO:0043226;organelle;1.15327381128332e-154!GO:0043229;intracellular organelle;3.519312701059e-154!GO:0043231;intracellular membrane-bound organelle;1.37964113699896e-149!GO:0043227;membrane-bound organelle;2.08351967235114e-149!GO:0044444;cytoplasmic part;3.70737409013918e-121!GO:0044422;organelle part;1.51822833887095e-103!GO:0044446;intracellular organelle part;3.36132653163334e-102!GO:0044238;primary metabolic process;3.42055406180894e-83!GO:0044237;cellular metabolic process;1.12011578592737e-79!GO:0043170;macromolecule metabolic process;7.02817375965912e-76!GO:0005515;protein binding;1.61693839729006e-71!GO:0032991;macromolecular complex;1.50511774990422e-69!GO:0043233;organelle lumen;2.85785888118076e-63!GO:0031974;membrane-enclosed lumen;2.85785888118076e-63!GO:0003723;RNA binding;1.74085007579742e-60!GO:0044428;nuclear part;2.87499371030954e-59!GO:0030529;ribonucleoprotein complex;1.59985353945477e-58!GO:0005634;nucleus;9.99107073689607e-53!GO:0019538;protein metabolic process;3.87524287462999e-52!GO:0033036;macromolecule localization;2.19809520858283e-47!GO:0005739;mitochondrion;5.04286635413381e-47!GO:0015031;protein transport;1.09869600231365e-46!GO:0044260;cellular macromolecule metabolic process;9.67770354189966e-46!GO:0044267;cellular protein metabolic process;2.96999507055598e-45!GO:0031090;organelle membrane;6.12709412929505e-44!GO:0045184;establishment of protein localization;8.67286805060259e-44!GO:0008104;protein localization;2.23967297615949e-43!GO:0006396;RNA processing;1.86812742420162e-42!GO:0043283;biopolymer metabolic process;3.77371148281618e-41!GO:0016043;cellular component organization and biogenesis;6.08405488138761e-41!GO:0031981;nuclear lumen;1.29524348254498e-39!GO:0006412;translation;4.5371417053269e-38!GO:0046907;intracellular transport;1.72153780222057e-37!GO:0005829;cytosol;9.59857296614309e-37!GO:0043234;protein complex;2.49313220203349e-35!GO:0010467;gene expression;3.95165975507716e-35!GO:0009058;biosynthetic process;2.19975696610037e-34!GO:0016071;mRNA metabolic process;5.29972941523672e-33!GO:0005840;ribosome;3.99607966577275e-32!GO:0006886;intracellular protein transport;6.57454402410987e-32!GO:0044429;mitochondrial part;1.54576618660507e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.48035298240974e-31!GO:0031967;organelle envelope;9.06805427082634e-31!GO:0044249;cellular biosynthetic process;1.81112332565389e-30!GO:0031975;envelope;2.0143118401352e-30!GO:0009059;macromolecule biosynthetic process;3.79829251385326e-30!GO:0000166;nucleotide binding;3.81072403097713e-29!GO:0008380;RNA splicing;7.35135111557605e-29!GO:0006397;mRNA processing;4.39957865853877e-28!GO:0003735;structural constituent of ribosome;1.53887284719296e-27!GO:0033279;ribosomal subunit;1.05023555641161e-24!GO:0005654;nucleoplasm;1.72192743810592e-24!GO:0051649;establishment of cellular localization;3.28907692226149e-24!GO:0051641;cellular localization;3.64381365974853e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.1535357939275e-23!GO:0065003;macromolecular complex assembly;2.78238217364152e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.90668141627051e-21!GO:0016462;pyrophosphatase activity;4.3717970274361e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.67199793600418e-21!GO:0017076;purine nucleotide binding;8.07024006348176e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;8.64013648305482e-21!GO:0017111;nucleoside-triphosphatase activity;8.73697966695803e-21!GO:0016874;ligase activity;9.77865817020187e-21!GO:0006996;organelle organization and biogenesis;1.21995872592276e-20!GO:0005740;mitochondrial envelope;2.01028058394748e-20!GO:0032553;ribonucleotide binding;2.64960229730784e-20!GO:0032555;purine ribonucleotide binding;2.64960229730784e-20!GO:0022607;cellular component assembly;1.2165896499377e-19!GO:0031966;mitochondrial membrane;1.3149254774955e-19!GO:0044451;nucleoplasm part;1.63685321249777e-19!GO:0005681;spliceosome;3.45634679094403e-19!GO:0012505;endomembrane system;5.08082556128386e-19!GO:0048770;pigment granule;6.14626342848744e-19!GO:0042470;melanosome;6.14626342848744e-19!GO:0005783;endoplasmic reticulum;1.15756990220271e-18!GO:0003676;nucleic acid binding;1.26328856921134e-18!GO:0006512;ubiquitin cycle;2.18033666372497e-18!GO:0005524;ATP binding;6.05864685963302e-18!GO:0019866;organelle inner membrane;6.11237973623173e-18!GO:0030554;adenyl nucleotide binding;7.08265943816606e-18!GO:0044445;cytosolic part;7.08265943816606e-18!GO:0006457;protein folding;1.00178298863003e-17!GO:0032559;adenyl ribonucleotide binding;1.60906534966082e-17!GO:0005743;mitochondrial inner membrane;3.51901878568252e-17!GO:0043228;non-membrane-bound organelle;4.25757246968484e-17!GO:0043232;intracellular non-membrane-bound organelle;4.25757246968484e-17!GO:0016070;RNA metabolic process;4.54487938990509e-17!GO:0048193;Golgi vesicle transport;4.72976504280802e-17!GO:0006119;oxidative phosphorylation;7.19716268074651e-17!GO:0005730;nucleolus;1.810097754876e-16!GO:0008134;transcription factor binding;1.90599400835954e-16!GO:0043412;biopolymer modification;2.71045558236523e-16!GO:0005794;Golgi apparatus;2.90700947327296e-16!GO:0016192;vesicle-mediated transport;3.00825162397998e-16!GO:0044265;cellular macromolecule catabolic process;3.17102994055343e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;5.57025887483666e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.14816907955212e-15!GO:0019941;modification-dependent protein catabolic process;1.21791504413791e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.21791504413791e-15!GO:0044257;cellular protein catabolic process;1.21791504413791e-15!GO:0043285;biopolymer catabolic process;3.63055264502297e-15!GO:0044432;endoplasmic reticulum part;5.11929929053598e-15!GO:0006605;protein targeting;5.16709772910822e-15!GO:0008135;translation factor activity, nucleic acid binding;6.07168795279495e-15!GO:0009057;macromolecule catabolic process;1.01822964168641e-14!GO:0051186;cofactor metabolic process;1.09198343777994e-14!GO:0022618;protein-RNA complex assembly;1.24733300444761e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.44163885462587e-14!GO:0006464;protein modification process;1.56402379788025e-14!GO:0030163;protein catabolic process;2.51853938653908e-14!GO:0031980;mitochondrial lumen;2.57778557490525e-14!GO:0005759;mitochondrial matrix;2.57778557490525e-14!GO:0044248;cellular catabolic process;2.57778557490525e-14!GO:0006259;DNA metabolic process;7.73992406689678e-14!GO:0044455;mitochondrial membrane part;8.0121972637032e-14!GO:0015934;large ribosomal subunit;2.73734091336727e-13!GO:0043687;post-translational protein modification;9.50514971104959e-13!GO:0005793;ER-Golgi intermediate compartment;1.03737602907735e-12!GO:0004386;helicase activity;4.41514545799645e-12!GO:0015935;small ribosomal subunit;4.58561775891421e-12!GO:0051082;unfolded protein binding;5.59251185882586e-12!GO:0006732;coenzyme metabolic process;7.91454802006404e-12!GO:0016887;ATPase activity;8.12490633070339e-12!GO:0003743;translation initiation factor activity;1.26987099537074e-11!GO:0031965;nuclear membrane;1.75173618192103e-11!GO:0006913;nucleocytoplasmic transport;2.19770249610158e-11!GO:0016604;nuclear body;2.35943640413387e-11!GO:0008565;protein transporter activity;3.26275474995815e-11!GO:0051169;nuclear transport;3.75339374764627e-11!GO:0048523;negative regulation of cellular process;3.89679026883459e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.23846946690603e-11!GO:0005635;nuclear envelope;7.25646646083022e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.37852548793491e-11!GO:0005746;mitochondrial respiratory chain;7.52817287310645e-11!GO:0003712;transcription cofactor activity;1.03702844071254e-10!GO:0008639;small protein conjugating enzyme activity;1.2828902391476e-10!GO:0042623;ATPase activity, coupled;1.33030810288282e-10!GO:0006399;tRNA metabolic process;1.48765711944839e-10!GO:0004842;ubiquitin-protein ligase activity;1.53495008456161e-10!GO:0008026;ATP-dependent helicase activity;1.65777806205329e-10!GO:0006974;response to DNA damage stimulus;1.77105548219009e-10!GO:0019787;small conjugating protein ligase activity;1.87264188316119e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05382206345651e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.38748272074684e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.8534385249445e-10!GO:0009259;ribonucleotide metabolic process;3.06326424735812e-10!GO:0016607;nuclear speck;3.84279242409752e-10!GO:0044453;nuclear membrane part;4.4714779784791e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.4963029508518e-10!GO:0000375;RNA splicing, via transesterification reactions;5.4963029508518e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.4963029508518e-10!GO:0006461;protein complex assembly;5.69904090066137e-10!GO:0006163;purine nucleotide metabolic process;5.83135804673692e-10!GO:0006413;translational initiation;6.4894954609198e-10!GO:0050794;regulation of cellular process;7.24987708392435e-10!GO:0005789;endoplasmic reticulum membrane;9.15322113772973e-10!GO:0016881;acid-amino acid ligase activity;1.02681892810058e-09!GO:0042254;ribosome biogenesis and assembly;1.38476445681085e-09!GO:0009150;purine ribonucleotide metabolic process;1.55916603769367e-09!GO:0012501;programmed cell death;2.05974974369243e-09!GO:0009056;catabolic process;2.84757274376909e-09!GO:0006164;purine nucleotide biosynthetic process;2.97350191868948e-09!GO:0016787;hydrolase activity;3.0733877142585e-09!GO:0048519;negative regulation of biological process;3.10301827613199e-09!GO:0006915;apoptosis;3.23793576792466e-09!GO:0006446;regulation of translational initiation;3.44800318637894e-09!GO:0007049;cell cycle;3.57018670853983e-09!GO:0048475;coated membrane;3.99079649994346e-09!GO:0030117;membrane coat;3.99079649994346e-09!GO:0050136;NADH dehydrogenase (quinone) activity;4.13226502727616e-09!GO:0003954;NADH dehydrogenase activity;4.13226502727616e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.13226502727616e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.91515549462355e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.44222313831805e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.44222313831805e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.44222313831805e-09!GO:0043038;amino acid activation;6.31704895436342e-09!GO:0006418;tRNA aminoacylation for protein translation;6.31704895436342e-09!GO:0043039;tRNA aminoacylation;6.31704895436342e-09!GO:0009260;ribonucleotide biosynthetic process;6.50930269653945e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.10374641486295e-09!GO:0005768;endosome;7.33952961577911e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.49272799741126e-09!GO:0008219;cell death;8.46789917289891e-09!GO:0016265;death;8.46789917289891e-09!GO:0030120;vesicle coat;8.97760114424423e-09!GO:0030662;coated vesicle membrane;8.97760114424423e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.57099422337212e-09!GO:0005643;nuclear pore;9.79485925428091e-09!GO:0006281;DNA repair;2.28023264071757e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.54160394430456e-08!GO:0042775;organelle ATP synthesis coupled electron transport;2.61153940490337e-08!GO:0042773;ATP synthesis coupled electron transport;2.61153940490337e-08!GO:0009055;electron carrier activity;3.25640681999227e-08!GO:0009060;aerobic respiration;3.25918688072334e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.37369935558804e-08!GO:0051188;cofactor biosynthetic process;4.06605059509187e-08!GO:0017038;protein import;4.18862474986048e-08!GO:0030964;NADH dehydrogenase complex (quinone);4.71220521431465e-08!GO:0045271;respiratory chain complex I;4.71220521431465e-08!GO:0005747;mitochondrial respiratory chain complex I;4.71220521431465e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.08927511618766e-08!GO:0006403;RNA localization;5.08927511618766e-08!GO:0015986;ATP synthesis coupled proton transport;5.08927511618766e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.08927511618766e-08!GO:0045333;cellular respiration;5.45165342749953e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.08461242249124e-08!GO:0050657;nucleic acid transport;7.8898264217577e-08!GO:0051236;establishment of RNA localization;7.8898264217577e-08!GO:0050658;RNA transport;7.8898264217577e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.38693506829554e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.38693506829554e-08!GO:0005788;endoplasmic reticulum lumen;8.70199064457406e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.26363288694649e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.8927789011872e-08!GO:0009141;nucleoside triphosphate metabolic process;1.29457973292454e-07!GO:0016740;transferase activity;1.30629069735678e-07!GO:0019829;cation-transporting ATPase activity;2.1388139553471e-07!GO:0046930;pore complex;2.16214295979409e-07!GO:0046034;ATP metabolic process;2.28583750622084e-07!GO:0005773;vacuole;3.1703481607918e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.23444291977964e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.23444291977964e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.01444313581993e-07!GO:0031988;membrane-bound vesicle;4.55397198157832e-07!GO:0009719;response to endogenous stimulus;4.74961394362912e-07!GO:0009117;nucleotide metabolic process;4.74961394362912e-07!GO:0051726;regulation of cell cycle;4.96571952247686e-07!GO:0005761;mitochondrial ribosome;5.35854502066803e-07!GO:0000313;organellar ribosome;5.35854502066803e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.3847993962723e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.3847993962723e-07!GO:0003924;GTPase activity;5.52522598109578e-07!GO:0044440;endosomal part;5.52522598109578e-07!GO:0010008;endosome membrane;5.52522598109578e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.61639148357009e-07!GO:0000074;regulation of progression through cell cycle;5.7121409918668e-07!GO:0050789;regulation of biological process;8.08580636319526e-07!GO:0051246;regulation of protein metabolic process;8.12712775847374e-07!GO:0006099;tricarboxylic acid cycle;8.19154319424825e-07!GO:0046356;acetyl-CoA catabolic process;8.19154319424825e-07!GO:0006366;transcription from RNA polymerase II promoter;8.27933103460264e-07!GO:0005798;Golgi-associated vesicle;8.36082718867546e-07!GO:0051187;cofactor catabolic process;8.48516133703446e-07!GO:0006793;phosphorus metabolic process;8.7743733852029e-07!GO:0006796;phosphate metabolic process;8.7743733852029e-07!GO:0016491;oxidoreductase activity;9.07445186537229e-07!GO:0044431;Golgi apparatus part;9.41907253782907e-07!GO:0051170;nuclear import;1.03022319764155e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.17772659146296e-06!GO:0006754;ATP biosynthetic process;1.21115834334154e-06!GO:0006753;nucleoside phosphate metabolic process;1.21115834334154e-06!GO:0006606;protein import into nucleus;1.21587812546937e-06!GO:0003714;transcription corepressor activity;1.26824032733501e-06!GO:0065002;intracellular protein transport across a membrane;1.40604044526209e-06!GO:0009109;coenzyme catabolic process;1.49987915031259e-06!GO:0016568;chromatin modification;1.51416881867402e-06!GO:0009108;coenzyme biosynthetic process;1.52220657315917e-06!GO:0031982;vesicle;1.55451700887834e-06!GO:0003724;RNA helicase activity;1.63256643732237e-06!GO:0043069;negative regulation of programmed cell death;1.71125483237596e-06!GO:0043566;structure-specific DNA binding;1.8044582993555e-06!GO:0045786;negative regulation of progression through cell cycle;1.85406843479978e-06!GO:0022402;cell cycle process;1.9899666471282e-06!GO:0016310;phosphorylation;2.04116233691934e-06!GO:0042981;regulation of apoptosis;2.12334146505035e-06!GO:0043067;regulation of programmed cell death;2.12666519891198e-06!GO:0031410;cytoplasmic vesicle;2.34490291186817e-06!GO:0016564;transcription repressor activity;2.34490291186817e-06!GO:0051028;mRNA transport;2.34490291186817e-06!GO:0043066;negative regulation of apoptosis;2.5662520508906e-06!GO:0006084;acetyl-CoA metabolic process;2.72680216538592e-06!GO:0031252;leading edge;3.84054035638311e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.86294895932136e-06!GO:0006752;group transfer coenzyme metabolic process;4.19649364373304e-06!GO:0000323;lytic vacuole;4.24903721029739e-06!GO:0005764;lysosome;4.24903721029739e-06!GO:0005770;late endosome;4.2758518918276e-06!GO:0032446;protein modification by small protein conjugation;4.6380198166465e-06!GO:0000151;ubiquitin ligase complex;5.2535619049989e-06!GO:0016567;protein ubiquitination;5.84805457759353e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.54855675169013e-06!GO:0006916;anti-apoptosis;6.74732070915931e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.16413988852743e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.1297214993527e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.13003177405055e-05!GO:0006364;rRNA processing;1.29322972587482e-05!GO:0016853;isomerase activity;1.36967867838856e-05!GO:0019899;enzyme binding;1.39607096485524e-05!GO:0051789;response to protein stimulus;1.85360360072068e-05!GO:0006986;response to unfolded protein;1.85360360072068e-05!GO:0016072;rRNA metabolic process;2.01322855847387e-05!GO:0008654;phospholipid biosynthetic process;2.01322855847387e-05!GO:0003713;transcription coactivator activity;2.0237589499102e-05!GO:0006091;generation of precursor metabolites and energy;2.1299483575638e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.18220156795646e-05!GO:0005769;early endosome;2.19940336341137e-05!GO:0031324;negative regulation of cellular metabolic process;2.44668814230942e-05!GO:0006613;cotranslational protein targeting to membrane;3.31557629025e-05!GO:0005667;transcription factor complex;4.21628489719315e-05!GO:0009892;negative regulation of metabolic process;4.94092356487848e-05!GO:0006260;DNA replication;5.01918241981981e-05!GO:0043623;cellular protein complex assembly;5.23413920635713e-05!GO:0016779;nucleotidyltransferase activity;5.27146783697566e-05!GO:0031968;organelle outer membrane;5.335080524011e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;5.54205790027212e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.54737693928569e-05!GO:0008186;RNA-dependent ATPase activity;5.57341299545576e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.96814832356688e-05!GO:0015630;microtubule cytoskeleton;6.91792748457032e-05!GO:0016859;cis-trans isomerase activity;7.38636201655903e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.45079436203295e-05!GO:0003697;single-stranded DNA binding;7.82645087507047e-05!GO:0005813;centrosome;7.90499051663244e-05!GO:0004298;threonine endopeptidase activity;8.28739467011433e-05!GO:0045259;proton-transporting ATP synthase complex;8.77739675175495e-05!GO:0000139;Golgi membrane;9.31515527552012e-05!GO:0019867;outer membrane;9.54081077321525e-05!GO:0004177;aminopeptidase activity;0.000105815645870791!GO:0005525;GTP binding;0.000109451948191639!GO:0003690;double-stranded DNA binding;0.000109646701499304!GO:0006323;DNA packaging;0.000110838853416111!GO:0030867;rough endoplasmic reticulum membrane;0.000112545142123139!GO:0007005;mitochondrion organization and biogenesis;0.000134709205192831!GO:0019222;regulation of metabolic process;0.000135920636066797!GO:0005905;coated pit;0.000143666081397316!GO:0006891;intra-Golgi vesicle-mediated transport;0.000148794558622142!GO:0005791;rough endoplasmic reticulum;0.0001514663379957!GO:0046914;transition metal ion binding;0.00016833841065954!GO:0030663;COPI coated vesicle membrane;0.000174219892588439!GO:0030126;COPI vesicle coat;0.000174219892588439!GO:0004004;ATP-dependent RNA helicase activity;0.0001775856580409!GO:0051276;chromosome organization and biogenesis;0.000180266450837803!GO:0005815;microtubule organizing center;0.000190898981408804!GO:0007243;protein kinase cascade;0.000191795179246831!GO:0016563;transcription activator activity;0.000196585257526276!GO:0051168;nuclear export;0.000238079737654472!GO:0006612;protein targeting to membrane;0.000242982028796906!GO:0044262;cellular carbohydrate metabolic process;0.000249626201912489!GO:0008092;cytoskeletal protein binding;0.000252338193968583!GO:0005048;signal sequence binding;0.000254515435420196!GO:0065007;biological regulation;0.000269001138318295!GO:0033116;ER-Golgi intermediate compartment membrane;0.000273946632222904!GO:0016197;endosome transport;0.000283782876975281!GO:0000245;spliceosome assembly;0.000285046908413324!GO:0032561;guanyl ribonucleotide binding;0.000314127004145298!GO:0019001;guanyl nucleotide binding;0.000314127004145298!GO:0008270;zinc ion binding;0.000325741791310477!GO:0009165;nucleotide biosynthetic process;0.000332888424446022!GO:0045454;cell redox homeostasis;0.000347096721838276!GO:0008361;regulation of cell size;0.000385971769072316!GO:0051427;hormone receptor binding;0.00039630705823544!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000409029618328139!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000423548883352706!GO:0045045;secretory pathway;0.000434773314494307!GO:0008047;enzyme activator activity;0.000443465439431653!GO:0000059;protein import into nucleus, docking;0.00045253056723724!GO:0005741;mitochondrial outer membrane;0.000456338928649864!GO:0016363;nuclear matrix;0.000497502710431111!GO:0030532;small nuclear ribonucleoprotein complex;0.000500677945797358!GO:0030029;actin filament-based process;0.000539248662714487!GO:0030137;COPI-coated vesicle;0.000555349488539812!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000556508896923346!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00056787297276263!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000567978828173893!GO:0005885;Arp2/3 protein complex;0.000612151771488531!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00063733590661209!GO:0004576;oligosaccharyl transferase activity;0.000648469624376349!GO:0030133;transport vesicle;0.000684942219872367!GO:0007050;cell cycle arrest;0.000686220399470992!GO:0035257;nuclear hormone receptor binding;0.000690350663964959!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000700731664445674!GO:0015399;primary active transmembrane transporter activity;0.000700731664445674!GO:0008250;oligosaccharyl transferase complex;0.000716291147377432!GO:0046483;heterocycle metabolic process;0.000716350832523361!GO:0004674;protein serine/threonine kinase activity;0.000750973160479608!GO:0016049;cell growth;0.000751967377373738!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000764106109263145!GO:0050662;coenzyme binding;0.000832994953116787!GO:0030118;clathrin coat;0.000836011508542465!GO:0030134;ER to Golgi transport vesicle;0.000927444100020225!GO:0030659;cytoplasmic vesicle membrane;0.000952492048209724!GO:0043021;ribonucleoprotein binding;0.000977649660948196!GO:0003729;mRNA binding;0.00100786644111257!GO:0006892;post-Golgi vesicle-mediated transport;0.00100836979381522!GO:0046489;phosphoinositide biosynthetic process;0.00100864774291524!GO:0007264;small GTPase mediated signal transduction;0.00101214867436001!GO:0006414;translational elongation;0.00105263004867853!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109904466630339!GO:0046474;glycerophospholipid biosynthetic process;0.00111449785878558!GO:0048522;positive regulation of cellular process;0.00127556596173384!GO:0030658;transport vesicle membrane;0.00131117582558144!GO:0030127;COPII vesicle coat;0.00132674935659003!GO:0012507;ER to Golgi transport vesicle membrane;0.00132674935659003!GO:0051920;peroxiredoxin activity;0.00139427983853756!GO:0016301;kinase activity;0.00140970544814145!GO:0016481;negative regulation of transcription;0.00142277625895817!GO:0005096;GTPase activator activity;0.00145526857269002!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00147979972212326!GO:0001558;regulation of cell growth;0.00164051483810275!GO:0043284;biopolymer biosynthetic process;0.00169234526101448!GO:0000278;mitotic cell cycle;0.00175320224845847!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00184393171187403!GO:0019752;carboxylic acid metabolic process;0.00185588175696663!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0018692379353686!GO:0008033;tRNA processing;0.00195714957682477!GO:0044433;cytoplasmic vesicle part;0.00197979936376888!GO:0031901;early endosome membrane;0.00198553538104979!GO:0006082;organic acid metabolic process;0.00198553538104979!GO:0048471;perinuclear region of cytoplasm;0.00228079207892136!GO:0001726;ruffle;0.00242574437737305!GO:0065009;regulation of a molecular function;0.00248917451432665!GO:0032940;secretion by cell;0.00259077329092134!GO:0007010;cytoskeleton organization and biogenesis;0.00265118846050836!GO:0000049;tRNA binding;0.00270788645890402!GO:0044452;nucleolar part;0.00281293068609616!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00286112543644489!GO:0016044;membrane organization and biogenesis;0.00299086646391045!GO:0018196;peptidyl-asparagine modification;0.00305007878722623!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00305007878722623!GO:0012506;vesicle membrane;0.00313299405994549!GO:0048500;signal recognition particle;0.00314160005361257!GO:0046467;membrane lipid biosynthetic process;0.00337875252374531!GO:0008139;nuclear localization sequence binding;0.00339427677702835!GO:0007040;lysosome organization and biogenesis;0.00339493891942843!GO:0007030;Golgi organization and biogenesis;0.00341020365937842!GO:0030132;clathrin coat of coated pit;0.00354172271502642!GO:0030119;AP-type membrane coat adaptor complex;0.00357209575917689!GO:0009967;positive regulation of signal transduction;0.00361113826334058!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00380054227012522!GO:0006497;protein amino acid lipidation;0.00415984141114902!GO:0003746;translation elongation factor activity;0.0041917011763813!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00420733236260286!GO:0030027;lamellipodium;0.00422337809426544!GO:0030660;Golgi-associated vesicle membrane;0.00428213231123417!GO:0006402;mRNA catabolic process;0.00428563041795926!GO:0003711;transcription elongation regulator activity;0.00431502740346061!GO:0030131;clathrin adaptor complex;0.00455682216960177!GO:0008234;cysteine-type peptidase activity;0.00460890169180026!GO:0000209;protein polyubiquitination;0.00507734735702622!GO:0048037;cofactor binding;0.00552456710131921!GO:0015992;proton transport;0.00558611605876523!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00565779386111981!GO:0045047;protein targeting to ER;0.00565779386111981!GO:0006818;hydrogen transport;0.00566905664565056!GO:0006289;nucleotide-excision repair;0.00581319691771962!GO:0030521;androgen receptor signaling pathway;0.00596951728015881!GO:0043492;ATPase activity, coupled to movement of substances;0.00617540913762979!GO:0051252;regulation of RNA metabolic process;0.00619057445488081!GO:0031625;ubiquitin protein ligase binding;0.00622138897911752!GO:0046519;sphingoid metabolic process;0.00632188035615896!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00632188035615896!GO:0006650;glycerophospholipid metabolic process;0.00637991273956169!GO:0007033;vacuole organization and biogenesis;0.00651962759996436!GO:0031323;regulation of cellular metabolic process;0.00651962759996436!GO:0051539;4 iron, 4 sulfur cluster binding;0.00705760221139636!GO:0033673;negative regulation of kinase activity;0.00718523553824682!GO:0006469;negative regulation of protein kinase activity;0.00718523553824682!GO:0015631;tubulin binding;0.00779624742354378!GO:0051287;NAD binding;0.00787871842211722!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00793053443258025!GO:0003899;DNA-directed RNA polymerase activity;0.00811500689140471!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00816332262942943!GO:0042802;identical protein binding;0.00840087805423999!GO:0008610;lipid biosynthetic process;0.00844755286569463!GO:0035258;steroid hormone receptor binding;0.00847410072797575!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00848049147869767!GO:0006007;glucose catabolic process;0.00848049147869767!GO:0006383;transcription from RNA polymerase III promoter;0.00859293487513541!GO:0008022;protein C-terminus binding;0.00866780146709389!GO:0030384;phosphoinositide metabolic process;0.00868832637805094!GO:0016126;sterol biosynthetic process;0.0087160302925862!GO:0003678;DNA helicase activity;0.00916768776894811!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0091758223549634!GO:0006607;NLS-bearing substrate import into nucleus;0.0093833005720699!GO:0051348;negative regulation of transferase activity;0.0093960854333143!GO:0051087;chaperone binding;0.00942961974863912!GO:0008180;signalosome;0.00947444162851942!GO:0007034;vacuolar transport;0.00966625487159385!GO:0006672;ceramide metabolic process;0.00966625487159385!GO:0001952;regulation of cell-matrix adhesion;0.00997173609352178!GO:0008312;7S RNA binding;0.0102051692868068!GO:0017166;vinculin binding;0.0105468072633844!GO:0050681;androgen receptor binding;0.010629087352562!GO:0005938;cell cortex;0.0106945682309814!GO:0000096;sulfur amino acid metabolic process;0.0107287927568504!GO:0005083;small GTPase regulator activity;0.0108643137943306!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0108872958454536!GO:0005099;Ras GTPase activator activity;0.0113689866438322!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0113689866438322!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0113689866438322!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0113689866438322!GO:0005762;mitochondrial large ribosomal subunit;0.0115934685484389!GO:0000315;organellar large ribosomal subunit;0.0115934685484389!GO:0006405;RNA export from nucleus;0.0118187971500413!GO:0004287;prolyl oligopeptidase activity;0.0118909790800448!GO:0016860;intramolecular oxidoreductase activity;0.0121970876827751!GO:0009112;nucleobase metabolic process;0.0121970876827751!GO:0031072;heat shock protein binding;0.0123880146222182!GO:0043087;regulation of GTPase activity;0.0124510068992759!GO:0006261;DNA-dependent DNA replication;0.0124690605958772!GO:0019843;rRNA binding;0.0126326671691208!GO:0051128;regulation of cellular component organization and biogenesis;0.0126775898568121!GO:0009966;regulation of signal transduction;0.0129322053536605!GO:0022408;negative regulation of cell-cell adhesion;0.0131066648043841!GO:0005862;muscle thin filament tropomyosin;0.0132498874057254!GO:0006520;amino acid metabolic process;0.0136621407588682!GO:0005774;vacuolar membrane;0.013992033979085!GO:0007265;Ras protein signal transduction;0.0140425452555394!GO:0030518;steroid hormone receptor signaling pathway;0.0140859983574037!GO:0042158;lipoprotein biosynthetic process;0.0140859983574037!GO:0003684;damaged DNA binding;0.0141338555455046!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.014658032888434!GO:0031902;late endosome membrane;0.015099368020574!GO:0051329;interphase of mitotic cell cycle;0.0153921028592971!GO:0005832;chaperonin-containing T-complex;0.0155097951776015!GO:0006350;transcription;0.0158993032078807!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0159650885828275!GO:0006695;cholesterol biosynthetic process;0.0160632685151144!GO:0030176;integral to endoplasmic reticulum membrane;0.0162403241282137!GO:0031124;mRNA 3'-end processing;0.0167075054771794!GO:0005869;dynactin complex;0.0176213722736764!GO:0051059;NF-kappaB binding;0.0177807406326477!GO:0005586;collagen type III;0.0181160203645648!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0183114822694003!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0192901052700818!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0192901052700818!GO:0006839;mitochondrial transport;0.0196453146863283!GO:0006352;transcription initiation;0.0199604093684736!GO:0048144;fibroblast proliferation;0.0201932948694899!GO:0048145;regulation of fibroblast proliferation;0.0201932948694899!GO:0045792;negative regulation of cell size;0.0202217194423815!GO:0006984;ER-nuclear signaling pathway;0.0202540792102167!GO:0032200;telomere organization and biogenesis;0.0203309327222666!GO:0000723;telomere maintenance;0.0203309327222666!GO:0030695;GTPase regulator activity;0.0203765052179555!GO:0006950;response to stress;0.020534193958378!GO:0016408;C-acyltransferase activity;0.0211740303291149!GO:0006506;GPI anchor biosynthetic process;0.021228473837634!GO:0006635;fatty acid beta-oxidation;0.0214308503156237!GO:0006778;porphyrin metabolic process;0.0216573911841239!GO:0033013;tetrapyrrole metabolic process;0.0216573911841239!GO:0000339;RNA cap binding;0.0220091491996685!GO:0007041;lysosomal transport;0.0222116122629513!GO:0006505;GPI anchor metabolic process;0.0223374502657235!GO:0006417;regulation of translation;0.0225095175788997!GO:0048487;beta-tubulin binding;0.0227848394627372!GO:0006740;NADPH regeneration;0.0231720703821274!GO:0006098;pentose-phosphate shunt;0.0231720703821274!GO:0005874;microtubule;0.0232092100714346!GO:0001953;negative regulation of cell-matrix adhesion;0.0233731876057804!GO:0030125;clathrin vesicle coat;0.0239127192754617!GO:0030665;clathrin coated vesicle membrane;0.0239127192754617!GO:0016251;general RNA polymerase II transcription factor activity;0.0241544633903971!GO:0031543;peptidyl-proline dioxygenase activity;0.0245601987916211!GO:0003756;protein disulfide isomerase activity;0.0248978027144066!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0248978027144066!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0248978027144066!GO:0019798;procollagen-proline dioxygenase activity;0.0253149398100478!GO:0008243;plasminogen activator activity;0.0253549025578719!GO:0000287;magnesium ion binding;0.0254733095822757!GO:0030032;lamellipodium biogenesis;0.0255312000481192!GO:0051052;regulation of DNA metabolic process;0.0255717717809247!GO:0022890;inorganic cation transmembrane transporter activity;0.0257219413473777!GO:0006509;membrane protein ectodomain proteolysis;0.0258212807263597!GO:0033619;membrane protein proteolysis;0.0258212807263597!GO:0043022;ribosome binding;0.0260846412060907!GO:0006401;RNA catabolic process;0.0261188661265062!GO:0007004;telomere maintenance via telomerase;0.0261912427510665!GO:0031529;ruffle organization and biogenesis;0.0264374889584328!GO:0000118;histone deacetylase complex;0.0267286411394961!GO:0050811;GABA receptor binding;0.0267288875479348!GO:0007006;mitochondrial membrane organization and biogenesis;0.0270753208190602!GO:0006378;mRNA polyadenylation;0.0271847173828608!GO:0032984;macromolecular complex disassembly;0.0277601360727202!GO:0003779;actin binding;0.0278179483185425!GO:0006769;nicotinamide metabolic process;0.0280351883535508!GO:0031418;L-ascorbic acid binding;0.0280717541738631!GO:0005100;Rho GTPase activator activity;0.0280973053805842!GO:0030308;negative regulation of cell growth;0.02811798718016!GO:0045893;positive regulation of transcription, DNA-dependent;0.0285694153532974!GO:0000314;organellar small ribosomal subunit;0.0294924182188948!GO:0005763;mitochondrial small ribosomal subunit;0.0294924182188948!GO:0045892;negative regulation of transcription, DNA-dependent;0.0294924182188948!GO:0035035;histone acetyltransferase binding;0.0294924182188948!GO:0006643;membrane lipid metabolic process;0.0298523858025813!GO:0048146;positive regulation of fibroblast proliferation;0.0300225316433923!GO:0050790;regulation of catalytic activity;0.0300225316433923!GO:0004563;beta-N-acetylhexosaminidase activity;0.0305731802823377!GO:0001872;zymosan binding;0.0307769267500048!GO:0001878;response to yeast;0.0307769267500048!GO:0040008;regulation of growth;0.0311206008593302!GO:0032906;transforming growth factor-beta2 production;0.0313856625547812!GO:0032909;regulation of transforming growth factor-beta2 production;0.0313856625547812!GO:0048518;positive regulation of biological process;0.0320644409458808!GO:0010468;regulation of gene expression;0.0322000412251411!GO:0044437;vacuolar part;0.0326109571727763!GO:0005801;cis-Golgi network;0.0328241255913859!GO:0051325;interphase;0.0334652444882856!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0335103730822374!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0335103730822374!GO:0006897;endocytosis;0.0339139386848887!GO:0010324;membrane invagination;0.0339139386848887!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0339139386848887!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0339139386848887!GO:0042168;heme metabolic process;0.0339139386848887!GO:0043433;negative regulation of transcription factor activity;0.0339139386848887!GO:0006310;DNA recombination;0.0340049731120819!GO:0047485;protein N-terminus binding;0.0341016059546663!GO:0006739;NADP metabolic process;0.0347194514544428!GO:0031123;RNA 3'-end processing;0.0354670946146837!GO:0019783;small conjugating protein-specific protease activity;0.0355239211454475!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0355857053391816!GO:0006626;protein targeting to mitochondrion;0.0355962621395936!GO:0004843;ubiquitin-specific protease activity;0.0356092278920261!GO:0015923;mannosidase activity;0.0359544563593289!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0369484893896527!GO:0033559;unsaturated fatty acid metabolic process;0.0369484893896527!GO:0006636;unsaturated fatty acid biosynthetic process;0.0369484893896527!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0369484893896527!GO:0000781;chromosome, telomeric region;0.0371250942999159!GO:0016790;thiolester hydrolase activity;0.0372666014037459!GO:0006354;RNA elongation;0.0385501970207395!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0393044149370319!GO:0033043;regulation of organelle organization and biogenesis;0.0393044149370319!GO:0043488;regulation of mRNA stability;0.0394415241387667!GO:0043487;regulation of RNA stability;0.0394415241387667!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0396082294306308!GO:0004784;superoxide dismutase activity;0.0396082294306308!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0399594540000928!GO:0030880;RNA polymerase complex;0.040085068504701!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0401459529535664!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0401459529535664!GO:0043241;protein complex disassembly;0.0407313329265215!GO:0048468;cell development;0.0407974799138978!GO:0051540;metal cluster binding;0.0422775599323006!GO:0051536;iron-sulfur cluster binding;0.0422775599323006!GO:0006096;glycolysis;0.0423317107481122!GO:0006661;phosphatidylinositol biosynthetic process;0.0423566132857717!GO:0000082;G1/S transition of mitotic cell cycle;0.0424367909562341!GO:0030522;intracellular receptor-mediated signaling pathway;0.0425793106102479!GO:0005765;lysosomal membrane;0.0429478046873688!GO:0006144;purine base metabolic process;0.0429478046873688!GO:0046365;monosaccharide catabolic process;0.0431191039719799!GO:0022407;regulation of cell-cell adhesion;0.0433153415489705!GO:0009889;regulation of biosynthetic process;0.0433153415489705!GO:0006302;double-strand break repair;0.0442742861782721!GO:0008168;methyltransferase activity;0.045284788456653!GO:0008383;manganese superoxide dismutase activity;0.0455319937177315!GO:0001315;age-dependent response to reactive oxygen species;0.0455319937177315!GO:0031461;cullin-RING ubiquitin ligase complex;0.0456735166205426!GO:0003682;chromatin binding;0.0461113753654682!GO:0051270;regulation of cell motility;0.0462213917789151!GO:0006767;water-soluble vitamin metabolic process;0.0470924168194648!GO:0008652;amino acid biosynthetic process;0.0474525314354328!GO:0004221;ubiquitin thiolesterase activity;0.0475424458985964!GO:0006779;porphyrin biosynthetic process;0.0475424458985964!GO:0033014;tetrapyrrole biosynthetic process;0.0475424458985964!GO:0006595;polyamine metabolic process;0.0478201396768562!GO:0022406;membrane docking;0.0482057738035268!GO:0048278;vesicle docking;0.0482057738035268!GO:0006904;vesicle docking during exocytosis;0.0491742028760705!GO:0008484;sulfuric ester hydrolase activity;0.0495434197950479!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0498339244250743!GO:0016615;malate dehydrogenase activity;0.0498339244250743
|sample_id=14332
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=HIF1A:2.9543902614;NKX3-1:2.32603546538;XBP1:2.25208799235;EVI1:1.93900976719;EN1,2:1.87460206771;MYBL2:1.8251971744;ELK1,4_GABP{A,B1}:1.68767250534;TEAD1:1.68000422067;FOX{I1,J2}:1.56478439124;SRF:1.55444652345;STAT1,3:1.5252050002;TLX2:1.51518385339;NFATC1..3:1.4927241066;ALX4:1.49227166965;SREBF1,2:1.3752999963;AHR_ARNT_ARNT2:1.33172120094;NFE2L1:1.31107586969;MAFB:1.2798777564;NKX3-2:1.23376627598;HOX{A5,B5}:1.20150992529;NFE2L2:1.16060791438;bHLH_family:1.06772115501;HOX{A4,D4}:1.053998555;SOX17:1.04244167385;HMX1:1.04130389154;NFE2:1.02859417225;TAL1_TCF{3,4,12}:1.01644396856;GCM1,2:0.998127346544;HMGA1,2:0.995892854765;NRF1:0.991796816867;ATF6:0.960012295207;HLF:0.957330846887;FOS_FOS{B,L1}_JUN{B,D}:0.914817339251;TP53:0.911003770268;BACH2:0.9044425527;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.88857056822;TLX1..3_NFIC{dimer}:0.866601510704;FOXN1:0.851630304567;FOSL2:0.826288165838;GTF2A1,2:0.820793672726;ZBTB16:0.792308552973;HSF1,2:0.787429595067;PAX2:0.764319493127;SP1:0.74993727812;ADNP_IRX_SIX_ZHX:0.730842074075;BPTF:0.729027289679;GZF1:0.70110645378;SOX2:0.684276377259;GLI1..3:0.673415885284;ZNF384:0.669186891186;TOPORS:0.65977892165;GATA4:0.637377256138;PAX8:0.633732035173;CREB1:0.62692717447;PRDM1:0.615580652202;CEBPA,B_DDIT3:0.610864579059;FOXP1:0.605200376354;NKX2-1,4:0.589856512398;NR3C1:0.576930623386;MZF1:0.576381215916;POU3F1..4:0.553661004151;ATF2:0.535039978247;MAZ:0.524903424594;ZNF143:0.51270038461;GFI1B:0.503950372379;STAT5{A,B}:0.502853921472;MTE{core}:0.484693937225;ZBTB6:0.459287848676;HBP1_HMGB_SSRP1_UBTF:0.426175824289;EBF1:0.422418791095;DBP:0.42147514365;ATF5_CREB3:0.408307178772;ELF1,2,4:0.406003299404;ATF4:0.404051195292;MEF2{A,B,C,D}:0.399180673386;AIRE:0.381000711507;ZFP161:0.380406033852;EP300:0.365075364657;CRX:0.353408538721;PAX4:0.337373826679;IKZF1:0.32557232856;GTF2I:0.324284091034;HIC1:0.310839321237;CDC5L:0.291351500516;MYFfamily:0.285033889539;NANOG:0.276784321973;IRF1,2:0.271244668964;ONECUT1,2:0.263705246723;PITX1..3:0.234469995496;RXR{A,B,G}:0.205245487471;POU1F1:0.203840698215;UFEwm:0.200299719324;KLF4:0.183195924524;TBX4,5:0.163002873881;MED-1{core}:0.15804349924;STAT2,4,6:0.145749362934;FOX{D1,D2}:0.143631443244;NKX2-2,8:0.140709573151;PATZ1:0.138822626029;NFIX:0.137299596823;RFX1:0.130589924024;IRF7:0.124294207696;ZNF238:0.093414413671;YY1:0.0918657062846;RXRA_VDR{dimer}:0.0884140158584;TFAP2B:0.0761746945712;NR1H4:0.0704930957467;XCPE1{core}:0.0702612071347;ZIC1..3:0.0498832878165;PRRX1,2:0.0494411906127;ALX1:0.0348257674596;RUNX1..3:0.00390854284703;FOXO1,3,4:-0.0285209418606;GATA6:-0.0343918317979;TEF:-0.0372226766733;TGIF1:-0.0598313421887;HNF1A:-0.0708418536215;FOXD3:-0.0826615726384;SPZ1:-0.0845353645716;RFX2..5_RFXANK_RFXAP:-0.0874402847657;NFKB1_REL_RELA:-0.0901408511483;PAX5:-0.115175760142;AR:-0.116521923221;JUN:-0.127987357514;TBP:-0.139673101988;FOXL1:-0.190095248781;NHLH1,2:-0.212408886712;EGR1..3:-0.214266157275;ARID5B:-0.239656254814;ETS1,2:-0.254333739208;NANOG{mouse}:-0.2575089672;LHX3,4:-0.259608532231;DMAP1_NCOR{1,2}_SMARC:-0.268032188981;ESR1:-0.28365118608;HOXA9_MEIS1:-0.292515515979;LEF1_TCF7_TCF7L1,2:-0.298040203391;PAX3,7:-0.299277700338;SMAD1..7,9:-0.303648167491;TFDP1:-0.315083675248;NFY{A,B,C}:-0.360986527117;SOX{8,9,10}:-0.378006354049;FOXP3:-0.382673226226;TFAP2{A,C}:-0.388246566039;PAX1,9:-0.396812851598;NFIL3:-0.402637484112;CDX1,2,4:-0.407885787609;VSX1,2:-0.432643245606;RREB1:-0.442601964534;ZNF148:-0.443714360789;REST:-0.460450754623;HAND1,2:-0.467261951139;HES1:-0.468043373105;SPI1:-0.477649951037;GFI1:-0.491409223683;RBPJ:-0.510754134039;TFAP4:-0.534299253562;RORA:-0.553494233934;SOX5:-0.562236255102;SPIB:-0.589073866628;HOX{A6,A7,B6,B7}:-0.602462360164;NKX6-1,2:-0.62414426556;MYB:-0.631739439188;PPARG:-0.640505659856;POU6F1:-0.645095035831;HNF4A_NR2F1,2:-0.667828189783;MTF1:-0.689613381799;POU5F1:-0.711384915106;LMO2:-0.770332206954;ZNF423:-0.796937476477;FOXM1:-0.862516222779;E2F1..5:-0.877212917704;NKX2-3_NKX2-5:-0.912253581219;IKZF2:-0.919398559512;ESRRA:-0.935235397505;BREu{core}:-0.946315788939;PBX1:-0.946681685651;PDX1:-0.957939344041;TFCP2:-0.980910990576;NR6A1:-0.993548424172;FOXA2:-1.01452532855;OCT4_SOX2{dimer}:-1.0571413229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.17059968643;POU2F1..3:-1.17336808352;PAX6:-1.20114254804;ZEB1:-1.2041565185;CUX2:-1.20985133158;SNAI1..3:-1.25950557168;FOXQ1:-1.50863890157;MYOD1:-1.69429136264;NR5A1,2:-1.94884340402;FOX{F1,F2,J1}:-2.1322060479;T:-2.13983398499
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14332-155F3;search_select_hide=table117:FF:14332-155F3
}}
}}

Latest revision as of 19:07, 4 June 2020

Name:Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12581
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage19 years old adult
sexfemale
age19
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005544
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12581 CAGE DRX008033 DRR008905
Accession ID Hg19

Library idBAMCTSS
CNhs12581 DRZ000330 DRZ001715
Accession ID Hg38

Library idBAMCTSS
CNhs12581 DRZ011680 DRZ013065
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005544
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GTGGCC sRNA-Seq DRX036985 DRR041351
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GTGGCC DRZ006993


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0706
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0223
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.607
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.054
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.054
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0227
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.136
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.392
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.314
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0467
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0856
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.071
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.426
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.054
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.221
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.054
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0597
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.103
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.054
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0557
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.521
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.289
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.145
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.102
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.378
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.771
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.418
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.116
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0.87
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12581

Jaspar motifP-value
MA0002.20.0369
MA0003.10.0236
MA0004.10.935
MA0006.10.491
MA0007.10.275
MA0009.10.0137
MA0014.10.727
MA0017.10.00134
MA0018.20.993
MA0019.10.569
MA0024.10.0113
MA0025.10.0551
MA0027.10.519
MA0028.12.97782e-4
MA0029.10.0211
MA0030.10.555
MA0031.10.523
MA0035.20.128
MA0038.10.577
MA0039.20.464
MA0040.10.314
MA0041.10.767
MA0042.10.486
MA0043.10.174
MA0046.10.0113
MA0047.20.564
MA0048.10.21
MA0050.10.635
MA0051.10.362
MA0052.10.709
MA0055.10.421
MA0057.10.249
MA0058.10.569
MA0059.10.731
MA0060.10.0284
MA0061.10.0596
MA0062.21.16408e-4
MA0065.28.02025e-5
MA0066.10.0624
MA0067.10.237
MA0068.10.283
MA0069.10.303
MA0070.10.578
MA0071.10.0343
MA0072.10.794
MA0073.10.845
MA0074.10.398
MA0076.13.30205e-5
MA0077.10.861
MA0078.10.752
MA0079.20.85
MA0080.25.371e-6
MA0081.10.361
MA0083.12.09484e-4
MA0084.10.135
MA0087.10.478
MA0088.10.894
MA0090.12.50448e-6
MA0091.10.541
MA0092.10.694
MA0093.10.714
MA0099.21.65961e-17
MA0100.10.791
MA0101.10.909
MA0102.20.147
MA0103.11.25754e-5
MA0104.20.568
MA0105.18.1811e-4
MA0106.10.982
MA0107.10.768
MA0108.20.275
MA0111.10.108
MA0112.20.00183
MA0113.10.556
MA0114.10.00989
MA0115.10.00367
MA0116.18.61873e-4
MA0117.10.493
MA0119.10.833
MA0122.10.64
MA0124.10.374
MA0125.10.34
MA0131.10.105
MA0135.10.0604
MA0136.10.0417
MA0137.20.0503
MA0138.27.45232e-4
MA0139.10.235
MA0140.10.56
MA0141.10.00282
MA0142.10.272
MA0143.10.997
MA0144.10.553
MA0145.10.283
MA0146.10.117
MA0147.10.696
MA0148.10.575
MA0149.10.618
MA0150.10.00245
MA0152.10.0997
MA0153.10.52
MA0154.10.00208
MA0155.10.183
MA0156.10.454
MA0157.10.559
MA0159.10.15
MA0160.10.0169
MA0162.10.547
MA0163.10.00816
MA0164.10.329
MA0258.10.00512
MA0259.10.692



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12581

Novel motifP-value
10.135
100.365
1000.662
1010.702
1020.147
1030.231
1040.924
1050.186
1060.00623
1070.0498
1080.453
1090.296
110.178
1100.674
1110.101
1120.286
1130.438
1140.392
1150.0122
1160.889
1170.917
1180.706
1190.34
120.932
1200.315
1210.573
1220.115
1230.242
1240.054
1250.316
1260.145
1270.0317
1280.0364
1290.158
130.52
1300.719
1310.11
1320.573
1330.806
1340.785
1350.435
1360.994
1370.474
1380.242
1390.599
140.513
1400.679
1410.0355
1420.237
1430.12
1440.707
1450.492
1460.393
1470.322
1480.243
1490.43
150.0444
1500.713
1510.389
1520.379
1530.673
1540.88
1550.00287
1560.0643
1570.806
1580.168
1590.986
160.255
1600.00991
1610.231
1620.284
1630.179
1640.349
1650.636
1660.49
1670.558
1680.191
1690.0269
170.611
180.462
190.31
20.18
200.749
210.974
220.374
230.379
240.507
250.138
260.287
270.0761
280.961
290.826
30.658
300.67
310.497
320.388
330.745
340.262
350.497
360.178
370.846
380.222
390.962
40.081
400.0641
410.226
420.457
430.218
440.00749
450.372
460.136
470.246
480.368
490.0883
50.472
500.939
510.223
520.439
530.599
540.505
550.245
560.287
570.712
580.132
590.00666
60.156
600.0919
610.263
620.0278
630.332
640.0609
650.146
660.292
670.915
680.835
690.194
70.116
700.131
710.378
720.635
730.865
740.201
750.395
760.397
770.291
780.0609
790.931
80.0589
800.478
810.293
820.253
830.691
840.543
850.166
860.517
870.884
880.89
890.205
90.52
900.676
910.47
920.554
930.48
940.52
950.612
960.444
970.351
980.00263
990.913



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12581


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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