FF:11435-118H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005288 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005288 | ||
|accession_numbers=CAGE;DRX008488;DRR009360;DRZ000785;DRZ002170;DRZ012135;DRZ013520 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037096;DRR041462;DRZ007104 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.16!144.49!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.39!TCF21;;chr20:6748325..6748352,+!p1@BMP2!1.42!35.81!BMP2;;chr17:1959369..1959388,+!p2@HIC1!1.36!57.29!HIC1;;chr8:11561684..11561751,+!p1@GATA4!1.34!20.64!GATA4;;chr11:34642612..34642646,+!p1@EHF!1.24!16.43!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.48!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.90!FOXF1;;chr15:83953397..83953425,-!p1@BNC1!1.08!12.64!BNC1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.75!GATA6;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.48!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.69!MAFK;;chr18:19749386..19749404,+!p2@GATA6!1.00!13.06!GATA6;;chr19:42636586..42636607,-!p1@POU2F2!0.97!23.59!POU2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.59!TWIST1;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.43!TBX20;;chr1:37940170..37940190,+!p1@ZC3H12A!0.96!102.37!ZC3H12A;;chr11:46299199..46299233,+!p1@CREB3L1!0.96!42.97!CREB3L1;;chr10:94449703..94449718,+!p1@HHEX!0.96!32.02!HHEX;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.49!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.92!12.64!TWIST2;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.00!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!0.89!82.15!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.43!TWIST1;;chr5:72744594..72744609,-!p1@FOXD1!0.84!28.65!FOXD1;;chr16:31076332..31076388,-!p3@ZNF668!0.84!5.90!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.83!444.85!TAX1BP3;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.32!PRRX1;;chr1:151032782..151032801,+!p4@MLLT11!0.82!11.80!MLLT11;;chr8:72756637..72756664,-!p3@MSC!0.81!6.32!MSC;;chr17:1958388..1958404,+!p1@HIC1!0.80!36.23!HIC1;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.01!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.80!14.74!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.27!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.69!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.27!TBX2;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.90!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.06!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!0.77!163.03!HMGA1;;chr8:72756063..72756125,-!p1@MSC!0.77!10.53!MSC;;chr12:66218836..66218888,+!p1@HMGA2!0.76!49.29!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.43!CREB3L1;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.24!MLLT11;;chr10:131762504..131762555,-!p1@EBF3!0.75!4.63!EBF3;;chr4:174451370..174451387,-!p1@HAND2!0.75!4.63!HAND2;;chr15:67458491..67458505,+!p18@SMAD3!0.75!4.63!SMAD3;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.63!ZFY;;chr21:36260773..36260804,-!p7@RUNX1!0.74!6.32!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!0.74!5.48!GATA3;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.38!ZBTB38;;chr20:50721803..50721857,-!p2@ZFP64!0.73!7.16!ZFP64;;chr1:170632285..170632309,+!p1@PRRX1!0.73!5.06!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!0.72!4.21!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.71!6.32!MSC;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.48!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.69!19.80!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.68!6.32!MSC;;chr21:38071430..38071456,+!p1@SIM2!0.68!3.79!SIM2;;chr3:25469815..25469866,+!p3@RARB!0.68!3.79!RARB;;chr3:25470156..25470227,+!p2@RARB!0.68!3.79!RARB;;chr11:125034640..125034655,+!p1@PKNOX2!0.68!3.79!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.60!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.96!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.66!6.32!MSX2;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.17!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.65!21.06!HIF1A;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.27!TOX2;;chr17:46622229..46622257,-!p6@HOXB2!0.65!4.21!HOXB2;;chr3:157823517..157823562,-!p1@SHOX2!0.65!3.79!SHOX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.64!43.81!TAX1BP3;;chr15:67418119..67418162,+!p5@SMAD3!0.64!3.79!SMAD3;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.37!PAX8;;chr10:35484053..35484076,+!p1@CREM!0.63!9.27!CREM;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.64!CREB3;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.30!AEBP1;;chr12:27485762..27485776,+!p3@ARNTL2!0.60!9.27!ARNTL2;;chr2:200322654..200322707,-!p2@SATB2!0.60!4.63!SATB2;;chr11:46299186..46299195,+!p3@CREB3L1!0.60!3.37!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!0.60!2.95!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.60!2.95!EN1;;chr8:40755333..40755352,-!p1@ZMAT4!0.60!2.95!ZMAT4;;chr8:55370720..55370733,+!p2@SOX17!0.60!2.95!SOX17;;chr9:16705069..16705086,-!p3@BNC2!0.60!2.95!BNC2;;chrY:21906594..21906622,-!p1@KDM5D!0.60!2.95!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.59!21.06!NCOR2;;chr5:72744562..72744573,-!p3@FOXD1!0.59!3.79!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.59!3.37!TCF4;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.65!TBX3;;chr16:86600426..86600441,+!p1@FOXC2!0.58!8.00!FOXC2;;chr8:106330696..106330719,+!p2@ZFPM2!0.58!3.79!ZFPM2;;chr17:46622205..46622218,-!p3@HOXB2!0.58!3.37!HOXB2;;chr11:65686776..65686787,+!p9@DRAP1!0.57!3.37!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.56!20.64!SNAI2;;chr11:61520075..61520136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XP1!0.24!1.69!FOXP1;;chr11:67007611..67007622,+!p6@KDM2A!0.24!1.26!KDM2A;;chr6:151712968..151712992,-!p5@ZBTB2!0.24!1.26!ZBTB2;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.24!1.26!GLIS2;;chrX:66763815..66763854,+!p2@AR!0.24!1.26!AR;;chr17:41623667..41623682,-!p8@ETV4!0.24!0.84!ETV4;;chr6:35465058..35465077,-!p2@TEAD3!0.24!0.84!TEAD3;;chr19:16435625..16435682,+!p1@KLF2!0.23!48.87!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.23!11.37!NR1D1;;chr2:85360499..85360598,+!p1@TCF7L1!0.23!8.00!TCF7L1;;chr19:53758094..53758147,-!p1@ZNF677!0.23!5.06!ZNF677;;chr1:43148792..43148849,+!p2@YBX1!0.23!5.06!YBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.23!4.63!FOXP1;;chr10:94449675..94449694,+!p2@HHEX!0.23!3.37!HHEX;;chr11:695215..695231,-!p2@DEAF1!0.23!2.11!DEAF1;;chr2:85980951..85981004,+!p1@ATOH8!0.23!1.69!ATOH8;;chr17:41623009..41623053,-!p4@ETV4!0.23!1.69!ETV4;;chr1:27022578..27022589,+!p5@ARID1A!0.23!1.69!ARID1A;;chr1:38325227..38325246,-!p2@MTF1!0.23!1.26!MTF1;;chr16:30546275..30546297,-!p2@ZNF747!0.23!1.26!ZNF747;;chr12:19593515..19593573,+!p9@AEBP2!0.23!1.26!AEBP2;;chr12:72056800..72056834,+!p1@THAP2!0.23!1.26!THAP2;;chr15:31619119..31619131,+!p14@KLF13!0.23!0.84!KLF13;;chr16:88519743..88519754,+!p2@ZFPM1!0.23!0.84!ZFPM1;;chr19:13213511..13213545,-!p2@LYL1!0.23!0.84!LYL1;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.23!0.84!TCF20;;chr7:100076744..100076749,-!p8@TSC22D4!0.23!0.84!TSC22D4;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.22!13.90!ZNF576;;chr19:42724436..42724507,+!p1@ZNF526!0.22!11.80!ZNF526;;chr8:123794102..123794160,+!p3@ZHX2!0.22!3.37!ZHX2;;chr8:48650982..48651023,-!p3@CEBPD!0.22!2.95!CEBPD;;chr18:3450293..3450304,+!p4@TGIF1!0.22!2.95!TGIF1;;chr18:51750928..51750942,-!p4@MBD2!0.22!2.95!MBD2;;chr19:926055..926068,+!p2@ARID3A!0.22!2.53!ARID3A;;chr1:151032142..151032195,+!p5@MLLT11!0.22!2.11!MLLT11;;chr12:53614155..53614187,-!p3@RARG!0.22!2.11!RARG;;chr14:74353454..74353469,+!p4@ZNF410!0.22!2.11!ZNF410;;chr9:109625229..109625282,+!p2@ZNF462!0.22!1.69!ZNF462;;chr2:121493492..121493537,+!p2@GLI2!0.22!1.69!GLI2;;chr6:28235131..28235151,+!p2@ZNF187!0.22!1.26!ZNF187;;chr8:135725369..135725388,-!p3@ZFAT!0.22!1.26!ZFAT;;chr11:65430586..65430593,-!p5@RELA!0.22!0.84!RELA;;chr12:3068957..3068978,+!p6@TEAD4!0.22!0.84!TEAD4;;chr14:35872414..35872425,-!p7@NFKBIA!0.22!0.84!NFKBIA;;chr19:59030961..59030974,-!p4@ZBTB45!0.22!0.84!ZBTB45;;chr2:28616471..28616478,+!p7@FOSL2!0.22!0.84!FOSL2;;chr18:3450161..3450183,+!p1@TGIF1!0.21!49.29!TGIF1;;chr11:64073022..64073056,+!p1@ESRRA!0.21!16.85!ESRRA;;chr6:130339710..130339745,+!p1@L3MBTL3!0.21!10.95!L3MBTL3;;chr4:2263861..2263883,-!p2@MXD4!0.21!8.00!MXD4;;chr17:41623692..41623715,-!p1@ETV4!0.21!5.48!ETV4;;chr10:77161533..77161546,-!p2@ZNF503!0.21!5.06!ZNF503;;chr7:17338324..17338341,+!p3@AHR!0.21!4.21!AHR;;chr6:134274322..134274342,+!p3@TBPL1!0.21!3.79!TBPL1;;chr1:164528445..164528459,+!p2@PBX1!0.21!3.79!PBX1;;chr12:51566562..51566584,-!p2@TFCP2!0.21!3.37!TFCP2;;chr1:59249645..59249656,-!p4@JUN!0.21!2.95!JUN;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.95!ZNF213;;chr1:151032833..151032850,+!p3@MLLT11!0.21!2.53!MLLT11;;chr11:62369383..62369399,-!p6@MTA2!0.21!2.53!MTA2;;chr11:64073006..64073017,+!p3@ESRRA!0.21!2.53!ESRRA;;chr19:52956798..52956843,+!p1@ZNF578!0.21!2.11!ZNF578;;chr7:150076370..150076396,+!p2@ZNF775!0.21!1.69!ZNF775;;chr9:4300016..4300039,-!p2@GLIS3!0.21!1.69!GLIS3;;chr12:125002827..125002855,-!p5@NCOR2!0.21!1.26!NCOR2;;chr14:35872926..35872951,-!p4@NFKBIA!0.21!1.26!NFKBIA;;chr15:37392703..37392717,-!p8@MEIS2!0.21!1.26!MEIS2;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.26!NR2F2;;chr4:103422076..103422117,+!p5@NFKB1!0.21!1.26!NFKB1;;chr8:103665947..103665981,-!p3@KLF10!0.21!1.26!KLF10;;chr18:56530595..56530606,+!p11@ZNF532!0.21!0.84!ZNF532;;chr9:4300004..4300015,-!p6@GLIS3!0.21!0.84!GLIS3;;chr2:101591314..101591333,+!p2@NPAS2!0.21!0.84!NPAS2;;chr2:231084820..231084836,-!p5@SP110!0.21!0.84!SP110;;chr3:185826286..185826318,-!p5@ETV5!0.21!0.84!ETV5;;chr19:56154958..56155027,+!p1@ZNF581!0.20!46.76!ZNF581;;chr5:149380256..149380343,+!p1@HMGXB3!0.20!42.13!HMGXB3;;chr19:56632592..56632670,-!p1@ZNF787!0.20!32.02!ZNF787;;chr19:57702846..57702891,+!p1@ZNF264!0.20!13.90!ZNF264;;chr8:144329092..144329140,+!p1@ZFP41!0.20!9.69!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.20!8.00!MAFF;;chr19:56111680..56111716,+!p1@ZNF524!0.20!4.63!ZNF524;;chr19:58095501..58095535,+!p1@ZIK1!0.20!4.21!ZIK1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.37!ZBTB7A;;chr6:43337375..43337410,-!p3@ZNF318!0.20!2.53!ZNF318;;chr9:14314522..14314556,-!p3@NFIB!0.20!2.53!NFIB;;chr10:44101902..44101932,+!p2@ZNF485!0.20!2.11!ZNF485;;chr16:67063142..67063153,+!p4@CBFB!0.20!1.26!CBFB;;chr19:12512015..12512044,-!p2@ZNF799!0.20!1.26!ZNF799;;chr3:178789993..178790049,-!p5@ZMAT3!0.20!1.26!ZMAT3;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.20!1.26!ZKSCAN4;;chr6:32158004..32158015,-!p2@PBX2!0.20!0.84!PBX2;;chr17:41623075..41623101,-!p9@ETV4!0.20!0.84!ETV4;;chr2:11605966..11605981,-!p3@E2F6!0.20!0.84!E2F6;;chr1:893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| 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XP1!0.24!1.69!FOXP1;;chr11:67007611..67007622,+!p6@KDM2A!0.24!1.26!KDM2A;;chr6:151712968..151712992,-!p5@ZBTB2!0.24!1.26!ZBTB2;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.24!1.26!GLIS2;;chrX:66763815..66763854,+!p2@AR!0.24!1.26!AR;;chr17:41623667..41623682,-!p8@ETV4!0.24!0.84!ETV4;;chr6:35465058..35465077,-!p2@TEAD3!0.24!0.84!TEAD3;;chr19:16435625..16435682,+!p1@KLF2!0.23!48.87!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.23!11.37!NR1D1;;chr2:85360499..85360598,+!p1@TCF7L1!0.23!8.00!TCF7L1;;chr19:53758094..53758147,-!p1@ZNF677!0.23!5.06!ZNF677;;chr1:43148792..43148849,+!p2@YBX1!0.23!5.06!YBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.23!4.63!FOXP1;;chr10:94449675..94449694,+!p2@HHEX!0.23!3.37!HHEX;;chr11:695215..695231,-!p2@DEAF1!0.23!2.11!DEAF1;;chr2:85980951..85981004,+!p1@ATOH8!0.23!1.69!ATOH8;;chr17:41623009..41623053,-!p4@ETV4!0.23!1.69!ETV4;;chr1:27022578..27022589,+!p5@ARID1A!0.23!1.69!ARID1A;;chr1:38325227..38325246,-!p2@MTF1!0.23!1.26!MTF1;;chr16:30546275..30546297,-!p2@ZNF747!0.23!1.26!ZNF747;;chr12:19593515..19593573,+!p9@AEBP2!0.23!1.26!AEBP2;;chr12:72056800..72056834,+!p1@THAP2!0.23!1.26!THAP2;;chr15:31619119..31619131,+!p14@KLF13!0.23!0.84!KLF13;;chr16:88519743..88519754,+!p2@ZFPM1!0.23!0.84!ZFPM1;;chr19:13213511..13213545,-!p2@LYL1!0.23!0.84!LYL1;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.23!0.84!TCF20;;chr7:100076744..100076749,-!p8@TSC22D4!0.23!0.84!TSC22D4;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.22!13.90!ZNF576;;chr19:42724436..42724507,+!p1@ZNF526!0.22!11.80!ZNF526;;chr8:123794102..123794160,+!p3@ZHX2!0.22!3.37!ZHX2;;chr8:48650982..48651023,-!p3@CEBPD!0.22!2.95!CEBPD;;chr18:3450293..3450304,+!p4@TGIF1!0.22!2.95!TGIF1;;chr18:51750928..51750942,-!p4@MBD2!0.22!2.95!MBD2;;chr19:926055..926068,+!p2@ARID3A!0.22!2.53!ARID3A;;chr1:151032142..151032195,+!p5@MLLT11!0.22!2.11!MLLT11;;chr12:53614155..53614187,-!p3@RARG!0.22!2.11!RARG;;chr14:74353454..74353469,+!p4@ZNF410!0.22!2.11!ZNF410;;chr9:109625229..109625282,+!p2@ZNF462!0.22!1.69!ZNF462;;chr2:121493492..121493537,+!p2@GLI2!0.22!1.69!GLI2;;chr6:28235131..28235151,+!p2@ZNF187!0.22!1.26!ZNF187;;chr8:135725369..135725388,-!p3@ZFAT!0.22!1.26!ZFAT;;chr11:65430586..65430593,-!p5@RELA!0.22!0.84!RELA;;chr12:3068957..3068978,+!p6@TEAD4!0.22!0.84!TEAD4;;chr14:35872414..35872425,-!p7@NFKBIA!0.22!0.84!NFKBIA;;chr19:59030961..59030974,-!p4@ZBTB45!0.22!0.84!ZBTB45;;chr2:28616471..28616478,+!p7@FOSL2!0.22!0.84!FOSL2;;chr18:3450161..3450183,+!p1@TGIF1!0.21!49.29!TGIF1;;chr11:64073022..64073056,+!p1@ESRRA!0.21!16.85!ESRRA;;chr6:130339710..130339745,+!p1@L3MBTL3!0.21!10.95!L3MBTL3;;chr4:2263861..2263883,-!p2@MXD4!0.21!8.00!MXD4;;chr17:41623692..41623715,-!p1@ETV4!0.21!5.48!ETV4;;chr10:77161533..77161546,-!p2@ZNF503!0.21!5.06!ZNF503;;chr7:17338324..17338341,+!p3@AHR!0.21!4.21!AHR;;chr6:134274322..134274342,+!p3@TBPL1!0.21!3.79!TBPL1;;chr1:164528445..164528459,+!p2@PBX1!0.21!3.79!PBX1;;chr12:51566562..51566584,-!p2@TFCP2!0.21!3.37!TFCP2;;chr1:59249645..59249656,-!p4@JUN!0.21!2.95!JUN;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.95!ZNF213;;chr1:151032833..151032850,+!p3@MLLT11!0.21!2.53!MLLT11;;chr11:62369383..62369399,-!p6@MTA2!0.21!2.53!MTA2;;chr11:64073006..64073017,+!p3@ESRRA!0.21!2.53!ESRRA;;chr19:52956798..52956843,+!p1@ZNF578!0.21!2.11!ZNF578;;chr7:150076370..150076396,+!p2@ZNF775!0.21!1.69!ZNF775;;chr9:4300016..4300039,-!p2@GLIS3!0.21!1.69!GLIS3;;chr12:125002827..125002855,-!p5@NCOR2!0.21!1.26!NCOR2;;chr14:35872926..35872951,-!p4@NFKBIA!0.21!1.26!NFKBIA;;chr15:37392703..37392717,-!p8@MEIS2!0.21!1.26!MEIS2;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.26!NR2F2;;chr4:103422076..103422117,+!p5@NFKB1!0.21!1.26!NFKB1;;chr8:103665947..103665981,-!p3@KLF10!0.21!1.26!KLF10;;chr18:56530595..56530606,+!p11@ZNF532!0.21!0.84!ZNF532;;chr9:4300004..4300015,-!p6@GLIS3!0.21!0.84!GLIS3;;chr2:101591314..101591333,+!p2@NPAS2!0.21!0.84!NPAS2;;chr2:231084820..231084836,-!p5@SP110!0.21!0.84!SP110;;chr3:185826286..185826318,-!p5@ETV5!0.21!0.84!ETV5;;chr19:56154958..56155027,+!p1@ZNF581!0.20!46.76!ZNF581;;chr5:149380256..149380343,+!p1@HMGXB3!0.20!42.13!HMGXB3;;chr19:56632592..56632670,-!p1@ZNF787!0.20!32.02!ZNF787;;chr19:57702846..57702891,+!p1@ZNF264!0.20!13.90!ZNF264;;chr8:144329092..144329140,+!p1@ZFP41!0.20!9.69!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.20!8.00!MAFF;;chr19:56111680..56111716,+!p1@ZNF524!0.20!4.63!ZNF524;;chr19:58095501..58095535,+!p1@ZIK1!0.20!4.21!ZIK1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.37!ZBTB7A;;chr6:43337375..43337410,-!p3@ZNF318!0.20!2.53!ZNF318;;chr9:14314522..14314556,-!p3@NFIB!0.20!2.53!NFIB;;chr10:44101902..44101932,+!p2@ZNF485!0.20!2.11!ZNF485;;chr16:67063142..67063153,+!p4@CBFB!0.20!1.26!CBFB;;chr19:12512015..12512044,-!p2@ZNF799!0.20!1.26!ZNF799;;chr3:178789993..178790049,-!p5@ZMAT3!0.20!1.26!ZMAT3;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.20!1.26!ZKSCAN4;;chr6:32158004..32158015,-!p2@PBX2!0.20!0.84!PBX2;;chr17:41623075..41623101,-!p9@ETV4!0.20!0.84!ETV4;;chr2:11605966..11605981,-!p3@E2F6!0.20!0.84!E2F6;;chr1:893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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11435-118H4 | |id=FF:11435-118H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |||
|library_id=CNhs12045 | |||
|library_id_phase_based=2:CNhs12045 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11435 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TAGCTT.11435 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11435 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.TAGCTT.11435 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor3 | |name=Smooth Muscle Cells - Coronary Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12045,LSID838,release011,COMPLETED | |profile_hcage=CNhs12045,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA350-R10a | |rna_catalog_number=CA350-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H4 | |rna_tube_id=118H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.TAGCTT | |||
|sample_age=39 | |sample_age=39 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=H | |sample_ethnicity=H | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.81253788610916e-206!GO:0005737;cytoplasm;1.92914655497603e-194!GO:0043226;organelle;6.2490506572957e-155!GO:0043229;intracellular organelle;1.03175242127601e-154!GO:0043231;intracellular membrane-bound organelle;5.1370301232547e-154!GO:0043227;membrane-bound organelle;1.1570006556905e-153!GO:0044444;cytoplasmic part;1.98192548390154e-145!GO:0044422;organelle part;1.09669117387834e-129!GO:0044446;intracellular organelle part;2.62844508145139e-128!GO:0032991;macromolecular complex;6.9913963782585e-91!GO:0030529;ribonucleoprotein complex;2.95775018731351e-80!GO:0005515;protein binding;4.34836921695517e-77!GO:0044238;primary metabolic process;1.296798289016e-73!GO:0044237;cellular metabolic process;6.47576358994477e-73!GO:0005739;mitochondrion;5.77181383769493e-68!GO:0043170;macromolecule metabolic process;2.07544094037294e-64!GO:0043233;organelle lumen;8.2787319761486e-64!GO:0031974;membrane-enclosed lumen;8.2787319761486e-64!GO:0003723;RNA binding;5.77373436599056e-59!GO:0044428;nuclear part;1.21992553639661e-55!GO:0031090;organelle membrane;1.73286260112557e-55!GO:0019538;protein metabolic process;9.25200983806413e-54!GO:0005840;ribosome;1.68969751693581e-52!GO:0006412;translation;5.51573011951424e-52!GO:0044260;cellular macromolecule metabolic process;2.48126183860853e-48!GO:0044267;cellular protein metabolic process;1.30697145517149e-47!GO:0003735;structural constituent of ribosome;2.91681201566672e-47!GO:0044429;mitochondrial part;6.47109346219657e-47!GO:0043234;protein complex;5.01959294195263e-46!GO:0016043;cellular component organization and biogenesis;1.01872070649739e-45!GO:0009058;biosynthetic process;1.32018797419644e-45!GO:0015031;protein transport;7.19764878628063e-45!GO:0033036;macromolecule localization;6.93827587723694e-44!GO:0005634;nucleus;9.58690028911418e-44!GO:0005829;cytosol;9.58690028911418e-44!GO:0044249;cellular biosynthetic process;1.48162994962806e-43!GO:0045184;establishment of protein localization;3.87353201726429e-42!GO:0009059;macromolecule biosynthetic process;4.3946057772552e-42!GO:0033279;ribosomal subunit;6.62532860525615e-42!GO:0008104;protein localization;1.45184584916304e-41!GO:0031967;organelle envelope;1.34792213311593e-40!GO:0031975;envelope;3.1885338775751e-40!GO:0006396;RNA processing;1.94197881921452e-38!GO:0031981;nuclear lumen;7.77791769136763e-35!GO:0046907;intracellular transport;1.26454160274452e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.61385975598147e-31!GO:0005740;mitochondrial envelope;1.66281653124264e-31!GO:0031966;mitochondrial membrane;1.04586274994688e-29!GO:0006886;intracellular protein transport;1.1020379584352e-29!GO:0019866;organelle inner membrane;9.71133896413558e-29!GO:0016071;mRNA metabolic process;9.78305709403404e-29!GO:0043283;biopolymer metabolic process;8.24799766386477e-28!GO:0005743;mitochondrial inner membrane;3.0559740846104e-27!GO:0006996;organelle organization and biogenesis;3.19098932741495e-27!GO:0008380;RNA splicing;4.26116330658947e-27!GO:0065003;macromolecular complex assembly;4.92912379012198e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.9243375634504e-26!GO:0044445;cytosolic part;6.79026892402923e-26!GO:0043228;non-membrane-bound organelle;9.47825169629529e-26!GO:0043232;intracellular non-membrane-bound organelle;9.47825169629529e-26!GO:0006397;mRNA processing;4.97097712715105e-25!GO:0010467;gene expression;6.99325013722854e-25!GO:0022607;cellular component assembly;3.67965860399001e-24!GO:0006119;oxidative phosphorylation;5.25873240029654e-24!GO:0051649;establishment of cellular localization;3.06277900484991e-23!GO:0051641;cellular localization;3.9462233533477e-23!GO:0005783;endoplasmic reticulum;5.01009831531996e-23!GO:0012505;endomembrane system;1.65256975027672e-22!GO:0015934;large ribosomal subunit;4.40186019544784e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.34230774451926e-22!GO:0044455;mitochondrial membrane part;9.41621575987961e-22!GO:0015935;small ribosomal subunit;7.29154509272512e-21!GO:0006457;protein folding;2.79173508685562e-20!GO:0016462;pyrophosphatase activity;5.85544278870743e-20!GO:0005654;nucleoplasm;5.9639612036876e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.06399451278238e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11965124962355e-19!GO:0005681;spliceosome;1.42796389688358e-19!GO:0017111;nucleoside-triphosphatase activity;1.92276287511307e-19!GO:0000166;nucleotide binding;5.98119572122503e-19!GO:0044432;endoplasmic reticulum part;9.6706680437853e-19!GO:0005746;mitochondrial respiratory chain;1.62712373148375e-18!GO:0031980;mitochondrial lumen;1.76769971626575e-18!GO:0005759;mitochondrial matrix;1.76769971626575e-18!GO:0006259;DNA metabolic process;6.91004679874535e-18!GO:0048770;pigment granule;7.00705552079224e-18!GO:0042470;melanosome;7.00705552079224e-18!GO:0005794;Golgi apparatus;7.32979654610102e-18!GO:0051186;cofactor metabolic process;1.35469506349845e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.2190129373076e-17!GO:0044451;nucleoplasm part;2.77816549896613e-16!GO:0005730;nucleolus;2.85439241646543e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.85439241646543e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.6871072864452e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.84789532139452e-16!GO:0003954;NADH dehydrogenase activity;3.84789532139452e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.84789532139452e-16!GO:0006605;protein targeting;6.2311460758279e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.78542871296134e-16!GO:0022618;protein-RNA complex assembly;1.96057117581717e-15!GO:0007049;cell cycle;2.70068122480205e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.23578323970868e-15!GO:0016874;ligase activity;4.31532179030759e-15!GO:0043285;biopolymer catabolic process;5.1455807273588e-15!GO:0048193;Golgi vesicle transport;5.39028162892716e-15!GO:0051082;unfolded protein binding;1.04024268836655e-14!GO:0044265;cellular macromolecule catabolic process;1.16628732597083e-14!GO:0016192;vesicle-mediated transport;1.16628732597083e-14!GO:0009057;macromolecule catabolic process;1.17546329710016e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.23454192034547e-14!GO:0042773;ATP synthesis coupled electron transport;2.23454192034547e-14!GO:0044248;cellular catabolic process;2.54648551116611e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.6645244038249e-14!GO:0045271;respiratory chain complex I;2.6645244038249e-14!GO:0005747;mitochondrial respiratory chain complex I;2.6645244038249e-14!GO:0006512;ubiquitin cycle;2.71786530777547e-14!GO:0005761;mitochondrial ribosome;4.73147407269875e-14!GO:0000313;organellar ribosome;4.73147407269875e-14!GO:0017076;purine nucleotide binding;5.81700989776794e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.35373426646301e-14!GO:0032553;ribonucleotide binding;8.81650780203195e-14!GO:0032555;purine ribonucleotide binding;8.81650780203195e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.63581237074036e-14!GO:0019941;modification-dependent protein catabolic process;1.4229458990512e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.4229458990512e-13!GO:0006732;coenzyme metabolic process;1.58728374945607e-13!GO:0044257;cellular protein catabolic process;1.62310459783033e-13!GO:0030163;protein catabolic process;1.79848220623714e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.88261985560739e-13!GO:0008135;translation factor activity, nucleic acid binding;2.31235077166111e-13!GO:0008134;transcription factor binding;2.49970007093443e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.92731803962208e-13!GO:0009055;electron carrier activity;3.35395190681777e-13!GO:0005789;endoplasmic reticulum membrane;6.71859624510128e-13!GO:0005793;ER-Golgi intermediate compartment;1.08067097955711e-12!GO:0043412;biopolymer modification;1.72150385212897e-12!GO:0012501;programmed cell death;4.24444412708744e-12!GO:0009259;ribonucleotide metabolic process;8.2024863042168e-12!GO:0006915;apoptosis;9.59393874141423e-12!GO:0042254;ribosome biogenesis and assembly;1.48969690607892e-11!GO:0006464;protein modification process;1.6747603542154e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.93513654230501e-11!GO:0000375;RNA splicing, via transesterification reactions;1.93513654230501e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.93513654230501e-11!GO:0006163;purine nucleotide metabolic process;2.47963959200755e-11!GO:0009150;purine ribonucleotide metabolic process;3.07575540981357e-11!GO:0022402;cell cycle process;3.21315832168229e-11!GO:0003743;translation initiation factor activity;5.62663283448683e-11!GO:0000278;mitotic cell cycle;8.15975960999031e-11!GO:0005524;ATP binding;8.57343788712145e-11!GO:0006164;purine nucleotide biosynthetic process;1.21887538132107e-10!GO:0030554;adenyl nucleotide binding;1.31261517849006e-10!GO:0009260;ribonucleotide biosynthetic process;1.31436790137083e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.4129412625719e-10!GO:0032559;adenyl ribonucleotide binding;1.47098829420702e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.65301989971496e-10!GO:0008219;cell death;1.8293317179774e-10!GO:0016265;death;1.8293317179774e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.88464417658708e-10!GO:0016491;oxidoreductase activity;2.89304648800959e-10!GO:0009141;nucleoside triphosphate metabolic process;2.95613233811329e-10!GO:0005635;nuclear envelope;3.92314961245393e-10!GO:0048523;negative regulation of cellular process;3.97452023355269e-10!GO:0006913;nucleocytoplasmic transport;4.12876738284476e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.39653949316381e-10!GO:0006413;translational initiation;5.96453331949284e-10!GO:0051169;nuclear transport;8.92655843687906e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.89739448934266e-10!GO:0009144;purine nucleoside triphosphate metabolic process;9.89739448934266e-10!GO:0008565;protein transporter activity;1.06701555290309e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.15947545190512e-09!GO:0044453;nuclear membrane part;1.25788260328327e-09!GO:0031965;nuclear membrane;1.34149706772433e-09!GO:0016887;ATPase activity;1.42781855986859e-09!GO:0006974;response to DNA damage stimulus;2.29570186041329e-09!GO:0043687;post-translational protein modification;2.50314909209414e-09!GO:0042623;ATPase activity, coupled;2.6548477896283e-09!GO:0009056;catabolic process;2.81813988653231e-09!GO:0006399;tRNA metabolic process;2.81813988653231e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.82821164509892e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.82821164509892e-09!GO:0051188;cofactor biosynthetic process;3.25407614352189e-09!GO:0009117;nucleotide metabolic process;3.73971210107069e-09!GO:0044431;Golgi apparatus part;4.98118392802634e-09!GO:0015986;ATP synthesis coupled proton transport;6.13306849420289e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.13306849420289e-09!GO:0017038;protein import;6.13306849420289e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.38573400440936e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.38573400440936e-09!GO:0003676;nucleic acid binding;7.17768201430599e-09!GO:0008639;small protein conjugating enzyme activity;8.82969257429783e-09!GO:0048519;negative regulation of biological process;8.861160021319e-09!GO:0009060;aerobic respiration;9.94908298715887e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.07112423137642e-08!GO:0003712;transcription cofactor activity;1.4438803536338e-08!GO:0046034;ATP metabolic process;1.57947418574284e-08!GO:0003924;GTPase activity;1.57947418574284e-08!GO:0030120;vesicle coat;1.59807172834054e-08!GO:0030662;coated vesicle membrane;1.59807172834054e-08!GO:0019787;small conjugating protein ligase activity;1.67322222197294e-08!GO:0006446;regulation of translational initiation;1.90275329712283e-08!GO:0004842;ubiquitin-protein ligase activity;2.06275947516906e-08!GO:0005788;endoplasmic reticulum lumen;2.06275947516906e-08!GO:0005768;endosome;2.25255040472694e-08!GO:0019829;cation-transporting ATPase activity;2.86155976431506e-08!GO:0051246;regulation of protein metabolic process;3.17342003896138e-08!GO:0051726;regulation of cell cycle;3.290900406781e-08!GO:0045333;cellular respiration;3.63015466209011e-08!GO:0043067;regulation of programmed cell death;3.83774571912276e-08!GO:0016604;nuclear body;3.85133708720146e-08!GO:0006461;protein complex assembly;3.9477626072224e-08!GO:0000074;regulation of progression through cell cycle;4.2771596709463e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.32956303798315e-08!GO:0043069;negative regulation of programmed cell death;4.42725934951484e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.47278127647983e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.56892485284193e-08!GO:0016787;hydrolase activity;4.62249403509784e-08!GO:0042981;regulation of apoptosis;5.16064262813724e-08!GO:0006754;ATP biosynthetic process;8.83893874744901e-08!GO:0006753;nucleoside phosphate metabolic process;8.83893874744901e-08!GO:0006916;anti-apoptosis;9.48443165464144e-08!GO:0043066;negative regulation of apoptosis;1.00082135016732e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.04500220897686e-07!GO:0005643;nuclear pore;1.2125288634085e-07!GO:0006281;DNA repair;1.25861866564147e-07!GO:0016881;acid-amino acid ligase activity;1.25861866564147e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.32120446708704e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.46159037090745e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.46159037090745e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.46159037090745e-07!GO:0006364;rRNA processing;1.48382720955152e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.53824420090319e-07!GO:0048475;coated membrane;1.57551628555529e-07!GO:0030117;membrane coat;1.57551628555529e-07!GO:0065002;intracellular protein transport across a membrane;1.81700292886976e-07!GO:0006091;generation of precursor metabolites and energy;1.94597638418295e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.7431779160236e-07!GO:0016072;rRNA metabolic process;2.80261202956687e-07!GO:0051276;chromosome organization and biogenesis;3.61078798827037e-07!GO:0043038;amino acid activation;3.61078798827037e-07!GO:0006418;tRNA aminoacylation for protein translation;3.61078798827037e-07!GO:0043039;tRNA aminoacylation;3.61078798827037e-07!GO:0006260;DNA replication;3.74167477103386e-07!GO:0006099;tricarboxylic acid cycle;3.90002425625494e-07!GO:0046356;acetyl-CoA catabolic process;3.90002425625494e-07!GO:0009108;coenzyme biosynthetic process;4.58192460079511e-07!GO:0006323;DNA packaging;5.1977914973043e-07!GO:0051187;cofactor catabolic process;5.4799387382546e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.66139438748182e-07!GO:0005773;vacuole;5.66139438748182e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.0027292171556e-07!GO:0009719;response to endogenous stimulus;6.11442192549809e-07!GO:0005694;chromosome;6.31383560701092e-07!GO:0000087;M phase of mitotic cell cycle;6.38870162659482e-07!GO:0016070;RNA metabolic process;6.38870162659482e-07!GO:0007067;mitosis;6.42134765089491e-07!GO:0031988;membrane-bound vesicle;7.16805337749543e-07!GO:0016740;transferase activity;7.39229762577552e-07!GO:0000139;Golgi membrane;8.14268769716093e-07!GO:0046930;pore complex;9.90791880283629e-07!GO:0007005;mitochondrion organization and biogenesis;9.97135980951003e-07!GO:0065004;protein-DNA complex assembly;1.1207773957326e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.13084948323938e-06!GO:0008026;ATP-dependent helicase activity;1.13084948323938e-06!GO:0045259;proton-transporting ATP synthase complex;1.13976902812616e-06!GO:0006084;acetyl-CoA metabolic process;1.34302273646932e-06!GO:0009109;coenzyme catabolic process;1.78370213529814e-06!GO:0022403;cell cycle phase;2.21853090040145e-06!GO:0044427;chromosomal part;2.43036389870167e-06!GO:0051301;cell division;2.62828667289542e-06!GO:0004386;helicase activity;3.26094764362381e-06!GO:0006793;phosphorus metabolic process;3.54832734707862e-06!GO:0006796;phosphate metabolic process;3.54832734707862e-06!GO:0044440;endosomal part;3.82291173292499e-06!GO:0010008;endosome membrane;3.82291173292499e-06!GO:0006752;group transfer coenzyme metabolic process;4.157756083529e-06!GO:0005798;Golgi-associated vesicle;4.21819728037688e-06!GO:0005762;mitochondrial large ribosomal subunit;4.82052554896859e-06!GO:0000315;organellar large ribosomal subunit;4.82052554896859e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.82708452880299e-06!GO:0051170;nuclear import;5.17651862739924e-06!GO:0016853;isomerase activity;7.1461160585859e-06!GO:0006366;transcription from RNA polymerase II promoter;7.55804907963017e-06!GO:0031410;cytoplasmic vesicle;7.62396173714812e-06!GO:0031982;vesicle;7.91557519513122e-06!GO:0000323;lytic vacuole;7.98195460694045e-06!GO:0005764;lysosome;7.98195460694045e-06!GO:0016607;nuclear speck;7.98195460694045e-06!GO:0004298;threonine endopeptidase activity;8.03951309763391e-06!GO:0006333;chromatin assembly or disassembly;8.30952894484174e-06!GO:0031252;leading edge;8.3879590059776e-06!GO:0005525;GTP binding;8.62341255760014e-06!GO:0006606;protein import into nucleus;9.85432633614266e-06!GO:0048522;positive regulation of cellular process;1.08418459464359e-05!GO:0016567;protein ubiquitination;1.10218403337575e-05!GO:0016779;nucleotidyltransferase activity;1.18008257003664e-05!GO:0032446;protein modification by small protein conjugation;1.23199500706477e-05!GO:0016310;phosphorylation;1.42128048394766e-05!GO:0005770;late endosome;1.43262582047161e-05!GO:0009165;nucleotide biosynthetic process;1.55358678027286e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.61435968297554e-05!GO:0045454;cell redox homeostasis;1.73069858815267e-05!GO:0005905;coated pit;1.78489751209749e-05!GO:0005667;transcription factor complex;1.90589589391572e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.1930771341514e-05!GO:0000245;spliceosome assembly;2.26820313385171e-05!GO:0019843;rRNA binding;2.33138132296674e-05!GO:0003697;single-stranded DNA binding;2.53637623321462e-05!GO:0000151;ubiquitin ligase complex;2.56294554040473e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.85411674942057e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.91142538655377e-05!GO:0050657;nucleic acid transport;3.27471748733681e-05!GO:0051236;establishment of RNA localization;3.27471748733681e-05!GO:0050658;RNA transport;3.27471748733681e-05!GO:0006403;RNA localization;3.31760981555483e-05!GO:0030867;rough endoplasmic reticulum membrane;3.32900394929035e-05!GO:0000785;chromatin;3.57996152708525e-05!GO:0006613;cotranslational protein targeting to membrane;3.57996152708525e-05!GO:0015630;microtubule cytoskeleton;3.72330318355498e-05!GO:0005769;early endosome;3.7988892268425e-05!GO:0005048;signal sequence binding;3.85600613099231e-05!GO:0032561;guanyl ribonucleotide binding;4.45225399391446e-05!GO:0019001;guanyl nucleotide binding;4.45225399391446e-05!GO:0006334;nucleosome assembly;4.87257316242314e-05!GO:0031968;organelle outer membrane;4.89701716712745e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.43921368087782e-05!GO:0044262;cellular carbohydrate metabolic process;5.68907365885535e-05!GO:0003714;transcription corepressor activity;6.39792111524428e-05!GO:0043623;cellular protein complex assembly;6.70071661062241e-05!GO:0045786;negative regulation of progression through cell cycle;6.96631117028984e-05!GO:0019867;outer membrane;7.11783650277464e-05!GO:0003899;DNA-directed RNA polymerase activity;7.84428183580766e-05!GO:0031324;negative regulation of cellular metabolic process;0.000120807286672613!GO:0031497;chromatin assembly;0.00012848747062514!GO:0016044;membrane organization and biogenesis;0.00013125804702008!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000138799691884153!GO:0008654;phospholipid biosynthetic process;0.000147163255902867!GO:0030029;actin filament-based process;0.000150166779833243!GO:0003724;RNA helicase activity;0.00015389931549574!GO:0051789;response to protein stimulus;0.000154876268549633!GO:0006986;response to unfolded protein;0.000154876268549633!GO:0043566;structure-specific DNA binding;0.000161840579467837!GO:0007243;protein kinase cascade;0.000206563537982636!GO:0000279;M phase;0.000210294265917857!GO:0003713;transcription coactivator activity;0.000210294265917857!GO:0006612;protein targeting to membrane;0.000217242151766128!GO:0005741;mitochondrial outer membrane;0.000220505956231412!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000223280749699721!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000223585211344586!GO:0050794;regulation of cellular process;0.000236237358639042!GO:0016859;cis-trans isomerase activity;0.000252574292030663!GO:0016568;chromatin modification;0.000274996408084424!GO:0030133;transport vesicle;0.000301896526504724!GO:0016563;transcription activator activity;0.000306453397126362!GO:0000314;organellar small ribosomal subunit;0.000330965432180048!GO:0005763;mitochondrial small ribosomal subunit;0.000330965432180048!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000342080868847655!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000343610317717768!GO:0008250;oligosaccharyl transferase complex;0.00034511583169343!GO:0005885;Arp2/3 protein complex;0.000366352905833228!GO:0051329;interphase of mitotic cell cycle;0.000380849031532849!GO:0016564;transcription repressor activity;0.000408146889741073!GO:0004576;oligosaccharyl transferase activity;0.000414814042659354!GO:0007010;cytoskeleton organization and biogenesis;0.000432480496957937!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000466591866431016!GO:0051028;mRNA transport;0.00049355228423189!GO:0008361;regulation of cell size;0.000503930064793804!GO:0030663;COPI coated vesicle membrane;0.000519404496892039!GO:0030126;COPI vesicle coat;0.000519404496892039!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00057067712330848!GO:0051427;hormone receptor binding;0.00057067712330848!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00057670789236531!GO:0015399;primary active transmembrane transporter activity;0.00057670789236531!GO:0016049;cell growth;0.000579895294840313!GO:0043681;protein import into mitochondrion;0.0006203951287993!GO:0018196;peptidyl-asparagine modification;0.000641393785904447!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000641393785904447!GO:0008092;cytoskeletal protein binding;0.000650849513238875!GO:0006626;protein targeting to mitochondrion;0.000715324848566838!GO:0043021;ribonucleoprotein binding;0.000728636798103646!GO:0009892;negative regulation of metabolic process;0.0007378651683776!GO:0051920;peroxiredoxin activity;0.000805341015194533!GO:0043284;biopolymer biosynthetic process;0.000812530702401145!GO:0005791;rough endoplasmic reticulum;0.000825794264837206!GO:0006950;response to stress;0.000898158907748615!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000901842026724455!GO:0001558;regulation of cell growth;0.000907783538442246!GO:0030176;integral to endoplasmic reticulum membrane;0.000907783538442246!GO:0005813;centrosome;0.000912942110110643!GO:0006891;intra-Golgi vesicle-mediated transport;0.000936467374458454!GO:0006414;translational elongation;0.000964802311712911!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100729476723198!GO:0008632;apoptotic program;0.00101147947375323!GO:0051325;interphase;0.00101591696261118!GO:0030137;COPI-coated vesicle;0.00101591696261118!GO:0048518;positive regulation of biological process;0.00106296307008274!GO:0006818;hydrogen transport;0.00109437573861006!GO:0015992;proton transport;0.00109437573861006!GO:0035257;nuclear hormone receptor binding;0.00112382601239778!GO:0008047;enzyme activator activity;0.00130117966914413!GO:0030132;clathrin coat of coated pit;0.00135872178091539!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00136772634745447!GO:0019899;enzyme binding;0.00146282843850726!GO:0007264;small GTPase mediated signal transduction;0.00158856064574341!GO:0065009;regulation of a molecular function;0.00159047412715555!GO:0006839;mitochondrial transport;0.00161075963714305!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00161617952628087!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00161617952628087!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00161617952628087!GO:0031072;heat shock protein binding;0.00162374732157973!GO:0045045;secretory pathway;0.00173750688077536!GO:0030658;transport vesicle membrane;0.00175324840264456!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00176615197225077!GO:0007006;mitochondrial membrane organization and biogenesis;0.00178428218076401!GO:0005815;microtubule organizing center;0.00178722920401281!GO:0006118;electron transport;0.00182521103255868!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00183770925040852!GO:0008033;tRNA processing;0.0019867922852648!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00206040852351309!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00206040852351309!GO:0048487;beta-tubulin binding;0.00211869991229608!GO:0044452;nucleolar part;0.00214927375805325!GO:0006082;organic acid metabolic process;0.00219576617224371!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00230148258488934!GO:0019752;carboxylic acid metabolic process;0.00230148258488934!GO:0008186;RNA-dependent ATPase activity;0.00249700847135171!GO:0008139;nuclear localization sequence binding;0.00257465762645225!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00265894146475133!GO:0030659;cytoplasmic vesicle membrane;0.00269082980668852!GO:0030880;RNA polymerase complex;0.00271175006667989!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00288922848791747!GO:0015002;heme-copper terminal oxidase activity;0.00288922848791747!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00288922848791747!GO:0004129;cytochrome-c oxidase activity;0.00288922848791747!GO:0000059;protein import into nucleus, docking;0.00289570051081935!GO:0042802;identical protein binding;0.00291986132711297!GO:0022890;inorganic cation transmembrane transporter activity;0.00298635921206489!GO:0030134;ER to Golgi transport vesicle;0.00301752996624079!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0030843332523759!GO:0051168;nuclear export;0.00317776239694089!GO:0006979;response to oxidative stress;0.0033162843513134!GO:0006778;porphyrin metabolic process;0.0034881936512499!GO:0033013;tetrapyrrole metabolic process;0.0034881936512499!GO:0006383;transcription from RNA polymerase III promoter;0.00355797078781239!GO:0046519;sphingoid metabolic process;0.0035837396909294!GO:0030118;clathrin coat;0.00382307286676462!GO:0030027;lamellipodium;0.00385340591230553!GO:0007040;lysosome organization and biogenesis;0.00394206110699343!GO:0005819;spindle;0.00403003291682446!GO:0051540;metal cluster binding;0.00412034380787221!GO:0051536;iron-sulfur cluster binding;0.00412034380787221!GO:0043492;ATPase activity, coupled to movement of substances;0.0041320703035638!GO:0048471;perinuclear region of cytoplasm;0.00431015454119937!GO:0006509;membrane protein ectodomain proteolysis;0.00439423293481144!GO:0033619;membrane protein proteolysis;0.00439423293481144!GO:0048468;cell development;0.00445159015149907!GO:0046474;glycerophospholipid biosynthetic process;0.00460916735400846!GO:0017166;vinculin binding;0.00460976144125395!GO:0046483;heterocycle metabolic process;0.00460976144125395!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00465403186900763!GO:0006595;polyamine metabolic process;0.00468086823245265!GO:0030127;COPII vesicle coat;0.0047004370536082!GO:0012507;ER to Golgi transport vesicle membrane;0.0047004370536082!GO:0042168;heme metabolic process;0.00495397691775393!GO:0030660;Golgi-associated vesicle membrane;0.0049751211390685!GO:0048500;signal recognition particle;0.00537100486654563!GO:0005684;U2-dependent spliceosome;0.0054060146697534!GO:0015631;tubulin binding;0.00564332144205853!GO:0004004;ATP-dependent RNA helicase activity;0.00585098925047316!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00586486542145776!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00610534298385629!GO:0006261;DNA-dependent DNA replication;0.00631142615140497!GO:0016272;prefoldin complex;0.00632975906299221!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00632975906299221!GO:0000428;DNA-directed RNA polymerase complex;0.00632975906299221!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00635938729732368!GO:0044433;cytoplasmic vesicle part;0.00645457550765408!GO:0050662;coenzyme binding;0.0065010991718372!GO:0005774;vacuolar membrane;0.00664908745981979!GO:0006740;NADPH regeneration;0.00668666967240045!GO:0006098;pentose-phosphate shunt;0.00668666967240045!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00674874129723956!GO:0009967;positive regulation of signal transduction;0.00721560186842851!GO:0046467;membrane lipid biosynthetic process;0.00740877212734765!GO:0003729;mRNA binding;0.00748196158969568!GO:0006672;ceramide metabolic process;0.00769193581131185!GO:0016860;intramolecular oxidoreductase activity;0.00769193581131185!GO:0007033;vacuole organization and biogenesis;0.00769193581131185!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00795090694768442!GO:0050789;regulation of biological process;0.00806110228819558!GO:0001726;ruffle;0.00823664886267078!GO:0016481;negative regulation of transcription;0.00836629535181121!GO:0051252;regulation of RNA metabolic process;0.00848035984761847!GO:0035258;steroid hormone receptor binding;0.00874587920137669!GO:0000287;magnesium ion binding;0.00884578342912493!GO:0040008;regulation of growth;0.00906750757999325!GO:0051087;chaperone binding;0.00924936978517922!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00929898135849757!GO:0045941;positive regulation of transcription;0.00935625442888463!GO:0030041;actin filament polymerization;0.0094814734129325!GO:0006897;endocytosis;0.00965831334339384!GO:0010324;membrane invagination;0.00965831334339384!GO:0005096;GTPase activator activity;0.00980765504882699!GO:0003756;protein disulfide isomerase activity;0.00988758287507046!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00988758287507046!GO:0005869;dynactin complex;0.010015246564891!GO:0004177;aminopeptidase activity;0.0100154291291843!GO:0030125;clathrin vesicle coat;0.0100649670437524!GO:0030665;clathrin coated vesicle membrane;0.0100649670437524!GO:0051270;regulation of cell motility;0.0102414473888557!GO:0000786;nucleosome;0.0104386274189357!GO:0006417;regulation of translation;0.0107220419287545!GO:0032940;secretion by cell;0.01094944539585!GO:0016197;endosome transport;0.01100956130485!GO:0051539;4 iron, 4 sulfur cluster binding;0.01132251010696!GO:0031418;L-ascorbic acid binding;0.0114056093438162!GO:0051287;NAD binding;0.0114472458355069!GO:0006007;glucose catabolic process;0.0115895099023674!GO:0046489;phosphoinositide biosynthetic process;0.0117367416261953!GO:0005862;muscle thin filament tropomyosin;0.0119778185680357!GO:0000075;cell cycle checkpoint;0.0119801980980593!GO:0006779;porphyrin biosynthetic process;0.0119900866743891!GO:0033014;tetrapyrrole biosynthetic process;0.0119900866743891!GO:0030521;androgen receptor signaling pathway;0.0121980399689288!GO:0030308;negative regulation of cell growth;0.0122221704336733!GO:0007050;cell cycle arrest;0.0122221704336733!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0123213069503332!GO:0045047;protein targeting to ER;0.0123213069503332!GO:0000082;G1/S transition of mitotic cell cycle;0.0124729775618167!GO:0008610;lipid biosynthetic process;0.0126525651671047!GO:0045792;negative regulation of cell size;0.0126925724889744!GO:0016126;sterol biosynthetic process;0.0130899358264803!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0134113172471881!GO:0045893;positive regulation of transcription, DNA-dependent;0.0134296663555239!GO:0030119;AP-type membrane coat adaptor complex;0.0136027524954496!GO:0007051;spindle organization and biogenesis;0.0137460678060738!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0139794841519681!GO:0003711;transcription elongation regulator activity;0.0140425718493944!GO:0031902;late endosome membrane;0.014108461543898!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0141591544182016!GO:0005832;chaperonin-containing T-complex;0.0141591544182016!GO:0012506;vesicle membrane;0.0146126568995348!GO:0003684;damaged DNA binding;0.0146723782937822!GO:0044437;vacuolar part;0.014734627338641!GO:0008180;signalosome;0.0147796229474673!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0162557854534554!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0164631143494382!GO:0004674;protein serine/threonine kinase activity;0.0166401882230338!GO:0006783;heme biosynthetic process;0.0167645174765474!GO:0003746;translation elongation factor activity;0.0168377697990422!GO:0019206;nucleoside kinase activity;0.0174895878417367!GO:0009116;nucleoside metabolic process;0.0175258433591427!GO:0008312;7S RNA binding;0.0179742112327024!GO:0000049;tRNA binding;0.0181238137748931!GO:0005765;lysosomal membrane;0.0185951655225335!GO:0031901;early endosome membrane;0.0186762945780911!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0186762945780911!GO:0031529;ruffle organization and biogenesis;0.019089438787372!GO:0006807;nitrogen compound metabolic process;0.0191504171914297!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0194367226654096!GO:0009889;regulation of biosynthetic process;0.0194775531872459!GO:0005657;replication fork;0.0195883356781094!GO:0048144;fibroblast proliferation;0.0198654407647301!GO:0048145;regulation of fibroblast proliferation;0.0198654407647301!GO:0031301;integral to organelle membrane;0.020215430437867!GO:0000339;RNA cap binding;0.02046687749593!GO:0043022;ribosome binding;0.0208187854020426!GO:0007021;tubulin folding;0.0210000545798834!GO:0003678;DNA helicase activity;0.0210705622998293!GO:0046426;negative regulation of JAK-STAT cascade;0.0212067805036948!GO:0040011;locomotion;0.0212145129505606!GO:0008094;DNA-dependent ATPase activity;0.0215091040903425!GO:0030131;clathrin adaptor complex;0.0216387114892396!GO:0043488;regulation of mRNA stability;0.02180027512009!GO:0043487;regulation of RNA stability;0.02180027512009!GO:0001666;response to hypoxia;0.0226311239536882!GO:0005637;nuclear inner membrane;0.0229694912400263!GO:0006352;transcription initiation;0.0230613214455859!GO:0008154;actin polymerization and/or depolymerization;0.0230880444228202!GO:0031625;ubiquitin protein ligase binding;0.023167151074216!GO:0016363;nuclear matrix;0.0233458325491424!GO:0005874;microtubule;0.0233458325491424!GO:0051101;regulation of DNA binding;0.0237129820165946!GO:0030031;cell projection biogenesis;0.0238406426563776!GO:0006520;amino acid metabolic process;0.0240081180834815!GO:0030032;lamellipodium biogenesis;0.0241352213620522!GO:0022406;membrane docking;0.0241533136568694!GO:0048278;vesicle docking;0.0241533136568694!GO:0031326;regulation of cellular biosynthetic process;0.0242950742449475!GO:0000209;protein polyubiquitination;0.0244662228494678!GO:0008538;proteasome activator activity;0.0248328697288576!GO:0050681;androgen receptor binding;0.0248858356604785!GO:0008243;plasminogen activator activity;0.0253243307136972!GO:0005092;GDP-dissociation inhibitor activity;0.0255113617070491!GO:0031543;peptidyl-proline dioxygenase activity;0.0261299417573619!GO:0040012;regulation of locomotion;0.0265247219110735!GO:0006220;pyrimidine nucleotide metabolic process;0.0269108611770577!GO:0033673;negative regulation of kinase activity;0.0269750519959635!GO:0006469;negative regulation of protein kinase activity;0.0269750519959635!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0280942107259557!GO:0031124;mRNA 3'-end processing;0.0285474796078307!GO:0005975;carbohydrate metabolic process;0.0285474796078307!GO:0006904;vesicle docking during exocytosis;0.0287129738105866!GO:0007242;intracellular signaling cascade;0.0287129738105866!GO:0030433;ER-associated protein catabolic process;0.0287581320268781!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0287581320268781!GO:0006401;RNA catabolic process;0.0295650255699677!GO:0035035;histone acetyltransferase binding;0.030216647696565!GO:0022408;negative regulation of cell-cell adhesion;0.0303771115174651!GO:0006378;mRNA polyadenylation;0.0304248939958713!GO:0050790;regulation of catalytic activity;0.0304248939958713!GO:0030149;sphingolipid catabolic process;0.0304562142972452!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0305619182796954!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0305619182796954!GO:0009166;nucleotide catabolic process;0.0306644282173695!GO:0006611;protein export from nucleus;0.0307788464749745!GO:0006739;NADP metabolic process;0.0312715928178304!GO:0045936;negative regulation of phosphate metabolic process;0.0312715928178304!GO:0019798;procollagen-proline dioxygenase activity;0.0313986698242928!GO:0051348;negative regulation of transferase activity;0.0321766328221297!GO:0006289;nucleotide-excision repair;0.0324098534639869!GO:0006635;fatty acid beta-oxidation;0.03291461407006!GO:0030145;manganese ion binding;0.033103853784889!GO:0006749;glutathione metabolic process;0.033145333391037!GO:0051272;positive regulation of cell motility;0.033149847388942!GO:0040017;positive regulation of locomotion;0.033149847388942!GO:0043433;negative regulation of transcription factor activity;0.0331779445353926!GO:0005801;cis-Golgi network;0.0332153773777673!GO:0031371;ubiquitin conjugating enzyme complex;0.034064581042787!GO:0050811;GABA receptor binding;0.0341982121395693!GO:0048037;cofactor binding;0.0341982121395693!GO:0004128;cytochrome-b5 reductase activity;0.0342587170263709!GO:0016301;kinase activity;0.034327038614693!GO:0048146;positive regulation of fibroblast proliferation;0.0346594986637641!GO:0006650;glycerophospholipid metabolic process;0.0350602791344869!GO:0009308;amine metabolic process;0.0351313470065819!GO:0030508;thiol-disulfide exchange intermediate activity;0.0351623239088743!GO:0007346;regulation of progression through mitotic cell cycle;0.0351789766791218!GO:0030833;regulation of actin filament polymerization;0.0357268474656079!GO:0005130;granulocyte colony-stimulating factor receptor binding;0.0375454922498143!GO:0006376;mRNA splice site selection;0.0377407322084398!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0377407322084398!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0377578485900087!GO:0007030;Golgi organization and biogenesis;0.0378712158450984!GO:0006769;nicotinamide metabolic process;0.0380405203979471!GO:0009303;rRNA transcription;0.038105940125649!GO:0009112;nucleobase metabolic process;0.0386836325602081!GO:0051271;negative regulation of cell motility;0.0389396108648637!GO:0006402;mRNA catabolic process;0.0390608139809876!GO:0006892;post-Golgi vesicle-mediated transport;0.0394505701702745!GO:0006733;oxidoreduction coenzyme metabolic process;0.039567524574127!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0399207053286247!GO:0005100;Rho GTPase activator activity;0.0401300551476418!GO:0030911;TPR domain binding;0.0401859620895841!GO:0050178;phenylpyruvate tautomerase activity;0.0402556422185509!GO:0006302;double-strand break repair;0.0403547045706226!GO:0006354;RNA elongation;0.0416343844947352!GO:0051052;regulation of DNA metabolic process;0.0418368150946556!GO:0008234;cysteine-type peptidase activity;0.042012758770215!GO:0019318;hexose metabolic process;0.0425357862239106!GO:0007265;Ras protein signal transduction;0.0426904139677614!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0434578268371551!GO:0006308;DNA catabolic process;0.0440367501790309!GO:0006607;NLS-bearing substrate import into nucleus;0.0444617743924301!GO:0006405;RNA export from nucleus;0.0445434016662444!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0447771411773261!GO:0043065;positive regulation of apoptosis;0.0455309556541057!GO:0035267;NuA4 histone acetyltransferase complex;0.0456929673354904!GO:0030518;steroid hormone receptor signaling pathway;0.0458198057107293!GO:0046822;regulation of nucleocytoplasmic transport;0.0458198057107293!GO:0043189;H4/H2A histone acetyltransferase complex;0.0458198057107293!GO:0045926;negative regulation of growth;0.0458198057107293!GO:0001953;negative regulation of cell-matrix adhesion;0.0460081150098672!GO:0000775;chromosome, pericentric region;0.0460153612931626!GO:0005996;monosaccharide metabolic process;0.0470537329014299!GO:0007034;vacuolar transport;0.0474279136418232!GO:0006458;'de novo' protein folding;0.0475852914776199!GO:0051084;'de novo' posttranslational protein folding;0.0475852914776199!GO:0008637;apoptotic mitochondrial changes;0.0477513106059507!GO:0006695;cholesterol biosynthetic process;0.0479052875502592!GO:0000096;sulfur amino acid metabolic process;0.0480710544232623!GO:0015036;disulfide oxidoreductase activity;0.048252624344612!GO:0005784;translocon complex;0.0483670979861742!GO:0046365;monosaccharide catabolic process;0.0483670979861742!GO:0006790;sulfur metabolic process;0.0483670979861742!GO:0031272;regulation of pseudopodium formation;0.0483670979861742!GO:0031269;pseudopodium formation;0.0483670979861742!GO:0031344;regulation of cell projection organization and biogenesis;0.0483670979861742!GO:0031268;pseudopodium organization and biogenesis;0.0483670979861742!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0483670979861742!GO:0031274;positive regulation of pseudopodium formation;0.0483670979861742!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0498393106004338 | |||
|sample_id=11435 | |sample_id=11435 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=coronary artery | |sample_tissue=coronary artery | ||
|top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533 | |top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11435-118H4;search_select_hide=table117:FF:11435-118H4 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Coronary Artery, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12045 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12045
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12045
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.833 |
| 10 | 10 | 0.211 |
| 100 | 100 | 0.816 |
| 101 | 101 | 0.197 |
| 102 | 102 | 0.987 |
| 103 | 103 | 0.143 |
| 104 | 104 | 0.515 |
| 105 | 105 | 0.487 |
| 106 | 106 | 0.351 |
| 107 | 107 | 0.0804 |
| 108 | 108 | 0.28 |
| 109 | 109 | 0.0696 |
| 11 | 11 | 0.116 |
| 110 | 110 | 0.21 |
| 111 | 111 | 0.339 |
| 112 | 112 | 0.783 |
| 113 | 113 | 0.0256 |
| 114 | 114 | 0.536 |
| 115 | 115 | 0.0817 |
| 116 | 116 | 0.039 |
| 117 | 117 | 0.807 |
| 118 | 118 | 0.714 |
| 119 | 119 | 0.159 |
| 12 | 12 | 0.905 |
| 120 | 120 | 0.0329 |
| 121 | 121 | 0.959 |
| 122 | 122 | 0.97 |
| 123 | 123 | 0.0186 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.709 |
| 126 | 126 | 0.699 |
| 127 | 127 | 0.719 |
| 128 | 128 | 0.283 |
| 129 | 129 | 0.704 |
| 13 | 13 | 0.648 |
| 130 | 130 | 0.239 |
| 131 | 131 | 0.791 |
| 132 | 132 | 0.867 |
| 133 | 133 | 0.417 |
| 134 | 134 | 0.238 |
| 135 | 135 | 0.11 |
| 136 | 136 | 0.152 |
| 137 | 137 | 0.632 |
| 138 | 138 | 0.511 |
| 139 | 139 | 0.397 |
| 14 | 14 | 0.755 |
| 140 | 140 | 0.668 |
| 141 | 141 | 0.713 |
| 142 | 142 | 0.426 |
| 143 | 143 | 0.00959 |
| 144 | 144 | 0.903 |
| 145 | 145 | 0.417 |
| 146 | 146 | 0.421 |
| 147 | 147 | 0.184 |
| 148 | 148 | 0.615 |
| 149 | 149 | 0.113 |
| 15 | 15 | 0.687 |
| 150 | 150 | 0.134 |
| 151 | 151 | 0.634 |
| 152 | 152 | 0.00995 |
| 153 | 153 | 0.249 |
| 154 | 154 | 0.418 |
| 155 | 155 | 0.117 |
| 156 | 156 | 0.962 |
| 157 | 157 | 0.407 |
| 158 | 158 | 0.0542 |
| 159 | 159 | 0.486 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.309 |
| 161 | 161 | 0.55 |
| 162 | 162 | 0.902 |
| 163 | 163 | 0.947 |
| 164 | 164 | 0.473 |
| 165 | 165 | 0.534 |
| 166 | 166 | 0.999 |
| 167 | 167 | 0.618 |
| 168 | 168 | 0.976 |
| 169 | 169 | 0.0828 |
| 17 | 17 | 0.128 |
| 18 | 18 | 0.0717 |
| 19 | 19 | 0.227 |
| 2 | 2 | 0.0874 |
| 20 | 20 | 0.365 |
| 21 | 21 | 0.967 |
| 22 | 22 | 0.192 |
| 23 | 23 | 0.12 |
| 24 | 24 | 0.279 |
| 25 | 25 | 0.388 |
| 26 | 26 | 0.214 |
| 27 | 27 | 0.454 |
| 28 | 28 | 0.267 |
| 29 | 29 | 0.481 |
| 3 | 3 | 0.58 |
| 30 | 30 | 0.216 |
| 31 | 31 | 0.587 |
| 32 | 32 | 2.0821e-5 |
| 33 | 33 | 0.891 |
| 34 | 34 | 0.194 |
| 35 | 35 | 0.842 |
| 36 | 36 | 0.289 |
| 37 | 37 | 0.095 |
| 38 | 38 | 0.653 |
| 39 | 39 | 0.552 |
| 4 | 4 | 0.825 |
| 40 | 40 | 0.541 |
| 41 | 41 | 0.283 |
| 42 | 42 | 0.98 |
| 43 | 43 | 0.517 |
| 44 | 44 | 0.161 |
| 45 | 45 | 0.297 |
| 46 | 46 | 0.258 |
| 47 | 47 | 0.588 |
| 48 | 48 | 0.38 |
| 49 | 49 | 0.97 |
| 5 | 5 | 0.924 |
| 50 | 50 | 0.607 |
| 51 | 51 | 0.73 |
| 52 | 52 | 0.901 |
| 53 | 53 | 0.367 |
| 54 | 54 | 0.686 |
| 55 | 55 | 0.325 |
| 56 | 56 | 0.886 |
| 57 | 57 | 0.942 |
| 58 | 58 | 0.4 |
| 59 | 59 | 0.0554 |
| 6 | 6 | 0.989 |
| 60 | 60 | 0.851 |
| 61 | 61 | 0.923 |
| 62 | 62 | 0.898 |
| 63 | 63 | 0.482 |
| 64 | 64 | 0.7 |
| 65 | 65 | 0.0655 |
| 66 | 66 | 0.856 |
| 67 | 67 | 0.429 |
| 68 | 68 | 0.383 |
| 69 | 69 | 0.647 |
| 7 | 7 | 0.879 |
| 70 | 70 | 0.658 |
| 71 | 71 | 0.878 |
| 72 | 72 | 0.728 |
| 73 | 73 | 0.00118 |
| 74 | 74 | 0.56 |
| 75 | 75 | 0.681 |
| 76 | 76 | 0.58 |
| 77 | 77 | 5.83809e-4 |
| 78 | 78 | 0.685 |
| 79 | 79 | 0.146 |
| 8 | 8 | 0.0824 |
| 80 | 80 | 0.875 |
| 81 | 81 | 0.852 |
| 82 | 82 | 0.762 |
| 83 | 83 | 0.927 |
| 84 | 84 | 0.804 |
| 85 | 85 | 0.246 |
| 86 | 86 | 0.599 |
| 87 | 87 | 0.00267 |
| 88 | 88 | 0.712 |
| 89 | 89 | 0.00258 |
| 9 | 9 | 0.246 |
| 90 | 90 | 0.619 |
| 91 | 91 | 0.832 |
| 92 | 92 | 0.307 |
| 93 | 93 | 0.0656 |
| 94 | 94 | 0.592 |
| 95 | 95 | 0.0241 |
| 96 | 96 | 0.653 |
| 97 | 97 | 0.41 |
| 98 | 98 | 0.715 |
| 99 | 99 | 0.0124 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12045
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
