FF:10426-106D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005605 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |accession_numbers=CAGE;DRX007879;DRR008751;DRZ000176;DRZ001561;DRZ011526;DRZ012911 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000997,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0005056,UBERON:0010317,UBERON:0004176,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0100017 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.30!198.14!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.25!175.11!ELF3;;chr3:189507432..189507459,+!p1@TP63!2.22!165.90!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.16!160.61!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.01!100.34!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.97!92.31!SOX7;;chr1:209979411..209979433,-!p2@IRF6!1.94!85.55!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!1.93!84.37!OVOL1;;chr6:1312325..1312340,+!p1@FOXQ1!1.87!116.51!FOXQ1;;chr17:80797886..80797906,-!p1@ZNF750!1.85!70.06!ZNF750;;chr6:126240380..126240430,+!p2@NCOA7!1.80!155.61!NCOA7;;chr14:37131058..37131139,+!p1@PAX9!1.80!62.42!PAX9;;chr2:176969228..176969260,+!p1@HOXD11!1.77!57.33!HOXD11;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.07!ELF3;;chr6:126240442..126240459,+!p4@NCOA7!1.73!67.12!NCOA7;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!56.54!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.64!433.52!KLF5;;chr6:10415484..10415508,-!p3@TFAP2A!1.62!40.47!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.61!44.88!BNC1;;chr8:102504651..102504683,+!p1@GRHL2!1.61!39.69!GRHL2;;chr11:65554563..65554576,+!p2@OVOL1!1.60!39.10!OVOL1;;chr5:134369905..134369972,-!p1@PITX1!1.57!54.19!PITX1;;chr1:6479968..6479986,-!p1@HES2!1.49!30.08!HES2;;chr5:134369879..134369898,-!p2@PITX1!1.49!29.89!PITX1;;chr14:38064429..38064486,-!p1@FOXA1!1.47!28.61!FOXA1;;chr6:126240463..126240489,+!p6@NCOA7!1.45!30.18!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.43!25.67!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.42!447.14!FOSB;;chr7:27205106..27205134,-!p2@HOXA9!1.42!25.58!HOXA9;;chr17:7492684..7492778,-!p2@SOX15!1.40!49.88!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.37!33.81!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.61!TFAP2C;;chr12:52445218..52445237,+!p1@NR4A1!1.36!266.83!NR4A1;;chr15:101069113..101069169,-!p1@CERS3!1.36!21.66!CERS3;;chr8:22550982..22550999,-!p1@EGR3!1.35!58.99!EGR3;;chr11:34642656..34642667,+!p2@EHF!1.35!21.56!EHF;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.28!IRX2;;chr3:189507460..189507471,+!p3@TP63!1.27!17.64!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.26!28.71!TFAP2A;;chr17:46687959..46688007,-!p2@HOXB7!1.26!23.62!HOXB7;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!145.42!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.85!ZBED1;;chr7:27205136..27205164,-!p1@HOXA9!1.21!15.29!HOXA9;;chr11:65667884..65667895,-!p2@FOSL1!1.19!56.25!FOSL1;;chr12:54785054..54785072,-!p4@ZNF385A!1.19!16.36!ZNF385A;;chr6:10419768..10419819,-!p6@TFAP2A!1.19!14.40!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!1.17!84.37!SREBF1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.42!EHF;;chr8:102504979..102505010,+!p2@GRHL2!1.14!12.93!GRHL2;;chr19:48773337..48773339,+!p2@ZNF114!1.14!12.74!ZNF114;;chr15:67418119..67418162,+!p5@SMAD3!1.11!13.33!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!1.10!14.11!NCOA7;;chr8:102504690..102504704,+!p3@GRHL2!1.09!11.37!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.09!11.17!BARX2;;chr2:70142232..70142251,+!p1@MXD1!1.08!62.23!MXD1;;chr1:158979872..158979898,+!p3@IFI16!1.07!33.61!IFI16;;chr11:65667846..65667868,-!p1@FOSL1!1.06!278.20!FOSL1;;chr7:101917447..101917479,+!p4@CUX1!1.05!10.19!CUX1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.24!ARNTL2;;chr17:38256799..38256815,-!p3@NR1D1!1.04!18.42!NR1D1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.97!GATA6;;chr11:65668011..65668020,-!p3@FOSL1!1.02!9.41!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.98!MECOM;;chr3:111314186..111314204,-!p1@ZBED2!1.00!9.11!ZBED2;;chr20:50721803..50721857,-!p2@ZFP64!0.97!13.33!ZFP64;;chr6:10413188..10413249,-!p7@TFAP2A!0.96!8.04!TFAP2A;;chr8:71157595..71157616,-!p13@NCOA2!0.96!8.04!NCOA2;;chr2:172967621..172967637,-!p1@DLX2!0.95!21.85!DLX2;;chr14:75745523..75745537,+!p1@FOS!0.94!959.05!FOS;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.74!BNC1;;chr1:209979375..209979386,-!p4@IRF6!0.94!7.74!IRF6;;chr5:137804405..137804444,+!p3@EGR1!0.93!9.02!EGR1;;chr3:193853927..193853944,+!p1@HES1!0.92!247.33!HES1;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.18!SOX9;;chr15:67418047..67418093,+!p4@SMAD3!0.92!9.41!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.92!7.35!IRF6;;chr2:157189180..157189290,-!p1@NR4A2!0.91!38.41!NR4A2;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.58!C11orf9;;chr17:48072574..48072597,-!p1@DLX3!0.91!7.06!DLX3;;chr17:38256822..38256851,-!p1@NR1D1!0.90!56.93!NR1D1;;chr18:19749386..19749404,+!p2@GATA6!0.90!10.09!GATA6;;chr20:55205825..55205847,+!p2@TFAP2C!0.90!6.96!TFAP2C;;chr1:24645832..24645853,+!p1@GRHL3!0.90!6.86!GRHL3;;chr9:110252035..110252057,-!p1@KLF4!0.89!115.14!KLF4;;chr14:37051798..37051831,-!p1@NKX2-8!0.89!6.76!NKX2-8;;chr5:137801160..137801176,+!p1@EGR1!0.88!685.26!EGR1;;chr6:1389789..1389821,+!p1@FOXF2!0.87!9.11!FOXF2;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.37!TFAP2A;;chr2:10091815..10091864,+!p1@GRHL1!0.86!8.53!GRHL1;;chr10:48355030..48355090,+!p1@ZNF488!0.86!8.13!ZNF488;;chr17:80797863..80797874,-!p2@ZNF750!0.86!6.27!ZNF750;;chr6:28321971..28321995,-!p1@ZNF323!0.86!6.17!ZNF323;;chrX:107018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| 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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aA431.CNhs10743.10426-106D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10426-106D3 | |id=FF:10426-106D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100017 | ||
|name=epidermoid carcinoma | |is_obsolete= | ||
|library_id=CNhs10743 | |||
|library_id_phase_based=2:CNhs10743 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10426 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10426 | |||
|name=epidermoid carcinoma cell line:A431 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10743,LSID692,release008,COMPLETED | |profile_hcage=CNhs10743,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.055963310743525,0,0,0,0,0.0405199926580667,0,-0.120112592277451,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.42583909057772,0,0,-0.153323010348428,0,0,0.0202996665176856,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.691938258352495,0,-0.138840361934628,0,0,0,0,0,0,0,0,-0.00391535459514878,0,0,0,0,0,-0.0105260975808211,0,-0.056393028207234,0,0,-0.0196179689352408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0405993330353711,0,0,0,0,0,0,0,0.0138293369585252,0,0.0053252906502419,0,0,0,0,0.147365895052353,-0.073895488046385,0,0,0.110677702814921,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190281979431107,0.200838022744453,0,0,-0.0634698810296808,-0.202525078816903,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.11192662148705,0.0777256582778561,0,0,0,0,0,0,0,-0.0203350135921329,0,-0.0814093171352994,0.394280026086495,0,0,0.00353331851004349,0,0,0,0,0,0,0,0,0,0.47802109907219,0,-0.00981321855394378,0,0,0,0,-0.0160928087328708,-0.305472230898407,0,-0.060836130302794,0.132493761667085,0,0,0,0,-0.0980067842861058,0,0.0227502635582439,-0.0827201683234173,0,0.0794895964525889,-0.0151131637458108,0,0,0,-0.434997466966147,0.644175983731607,0,0,-0.101480185234188,-0.181349618560659,0,0,-0.391044581551635,0,-0.236192864364026,-0.0361435484997385,0,0.0063616469455979,0,0,0,0,0,0,0,0,0,0.0202996665176856,0,-0.0186306376825086,0.0297829877600005,0,0.375095196626921,0.878837097539213,0.0579782955778623,-0.0100492340467755,0,0,0.232854810068188,0.0680087059188503,0,0.0764688064838132,0,0.123449363567806,0.0088951815785454,0.329057455868262,0.147365895052353,-0.147401849371139,-0.0780550980627973,0.0378509643539882,-0.116583322351342,-0.468644564286345,0.0315836192796587,-0.0886345942438851,0,-0.19020440566207,-0.0516927487737666,0.0405993330353711,0.143629747351985,0,0.260295416551624,0,0.198980563316092,-0.133343130037804,0.15559335963462,0.0114122404865485,0.329487105141962,0.0439779027951345,0.187956984452948,-0.0395325284566706,-0.160787938515742,0.0304919966514439,-0.093632241585223,0,0,0.0282626217762683,-0.00314902930186349,0.436252266471301,0.0761120851738155,0,-0.0744030146209292,0.0752854862746164,0.0405993330353711,-0.118089342470705,-0.253108558832976,0,-0.0133251738751571,0.0864019883822892,0,0.0777256582778561,0,0,0,0.106828649319918,0.16941128599594,-0.0892258142035602,0,0.00266264532512095,0,0.138678116578526,0,0.107265753917348,0.024673100082626,-0.0466941086766482,-0.0749467398413406,0,0.0745431472856205,0.405809408520818,0.207780636410067,-0.14779097609277,-0.0178474937764541,0.107087709077993,-0.0251801509427103,0.263316727499673,-0.142562225498357,0,-0.0881268324752877,0,-0.88354475051838,0.572254239874043,-0.00624154679101507,-0.260341084583637,0,0.39680631635048,0,-0.0496825061372423,0,-0.188027872314376,-0.114594660895521,-0.295659627228702,0.433531794965702,0,-0.152651419739561,0.910806047697045,0.0405993330353711,0.0621940811138806,-0.0237745356810714,0.251380043684644,-0.0384404618475893,0.00280771230638066,-0.0299970952787421,0.019413011264844,0,0.175185594363532,0,0,0.409041007156265,-0.0918462904124041,0,-0.00745270702778225,-0.0358917675062617,-0.14756833177219,0.0276586739170505,0,0,0.709489028790519,0,0,0.0499521028189227,-0.0636048451378017,0.27560981608922,0.1881901946217,0,-0.108622809454255,0,0,0.119120748415677,0,-0.40524610408991,0.0202996665176856,0,0.084573761587848,-0.00338184789874429,0,0,0,0.0330581641537879,0,-0.0589565109853561,0,0,0,0,0.00805140289426989,-0.109090832183603,0.101814379206656,0,0.111753554223418,0,0,0,0,0.173175188536093,0,0,0,0.45546337825265,-0.0175823640804537,0.0778206070680326,0.0388628291389281,0,0.0202996665176856,0,-0.0148853798090218,0.189440339521985,0.0405993330353711,0.205777975906079,0.0777256582778561,0.0388628291389281,0,0,-0.0861409897892114,0,0,0.0202996665176856,0.0202996665176856,-0.057730457053664,-0.201906513030496,0,0,0,-0.27695440160179,0,0,0,0,-0.00651922125197624,0,0,-0.119501325433261,0,0.08921169195941,0.29351331708008,0,0.110000495005844,-0.0818512745623705,0.889799658563588,0,0.296648514380853,-0.261347131789888,0,0,-0.180211945374439,0,0,0,0,0,0,0,0.143629747351985,0.143629747351985,-0.214314512399756,0.0762629772612105,0,0,0,0,0.0405993330353711,0,0,0,0,0,-0.253668556771064,-0.0144983983806543,0.143629747351985,0,0,0,0,0,0,0.183741241752243,0.300598435785387,0,0,0,0.0228054639584742,0,0,0,0,0.229077739155721,0,0,0,0,0,-0.056393028207234,0,0.0405993330353711,0,0.11192662148705,-0.564807121153884,0,0,0.132212314996537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0775189367090051,-0.120112592277451,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.00195775222192712,0,0,0,0.336720151319299,0,0.0405199926580667,0,0,0,0.0388628291389281,0,0.104878615370866,0.148324257190426,0,0,0,0,0,0,0.0777256582778561,0,0,0,0.100419011372227,0,0,0,0.206746385156635,0,-0.209481857695054,-0.0544715792796069,0,0,0.17987554209088,0,0,0,0,0,0,-0.0110407575108415,0,0,0,0,0,0,0,0.055963310743525,0,0,0.0202996665176856,0,0,0,0,0,0,0,0.200838022744453,0,0,0,0,0,0,-0.0199629940287926,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0531699806615981,0,0,0,0,0,0,0.0989077260720806,0.175044405013911,-0.0553886629248341,0,0,0.0405993330353711,-0.054385572482455,0,0,-0.0122442972307292,0,0.106397801117191,0,0,0,0,0,0,0,0,0.143629747351985,0,0,0.0202996665176856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.0718148736759925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0405993330353711,0,0,0,0,0,0,0.105270477235738,0.356771584438969,0,0,0,0,0,0,0.0405993330353711,0.0202996665176856,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.40346875413798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=57.988 | |rna_weight_ug=57.988 | ||
|sample_age=85 | |sample_age=85 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1872 | |sample_cell_catalog=RCB1872 | ||
|sample_cell_line=A431 | |sample_cell_line=A431 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.12226289163117e-254!GO:0043226;organelle;3.8062745397786e-199!GO:0043229;intracellular organelle;1.75798765321573e-198!GO:0043231;intracellular membrane-bound organelle;6.46279625532328e-187!GO:0043227;membrane-bound organelle;6.46279625532328e-187!GO:0005737;cytoplasm;4.90630935483534e-181!GO:0044422;organelle part;5.15191660228305e-147!GO:0044446;intracellular organelle part;2.06308757817699e-145!GO:0044444;cytoplasmic part;3.52472848628662e-107!GO:0032991;macromolecular complex;4.5448709624915e-104!GO:0005634;nucleus;2.79024201476324e-91!GO:0044237;cellular metabolic process;9.62144491590651e-89!GO:0044238;primary metabolic process;1.14735671443655e-88!GO:0043170;macromolecule metabolic process;1.47887228628636e-83!GO:0005515;protein binding;3.07610586308474e-83!GO:0044428;nuclear part;4.16293527431794e-81!GO:0030529;ribonucleoprotein complex;1.38289183441432e-80!GO:0043233;organelle lumen;3.23858538459786e-73!GO:0031974;membrane-enclosed lumen;3.23858538459786e-73!GO:0003723;RNA binding;4.84524505999962e-72!GO:0043234;protein complex;4.74866992914875e-55!GO:0005739;mitochondrion;6.11342837421196e-55!GO:0016043;cellular component organization and biogenesis;5.18852631211821e-51!GO:0043283;biopolymer metabolic process;6.53486773039772e-51!GO:0006412;translation;8.25196081426254e-51!GO:0019538;protein metabolic process;1.16454042090766e-50!GO:0006396;RNA processing;1.88338198984859e-50!GO:0043228;non-membrane-bound organelle;6.25646337317145e-50!GO:0043232;intracellular non-membrane-bound organelle;6.25646337317145e-50!GO:0031981;nuclear lumen;3.39558559973759e-48!GO:0005840;ribosome;1.757692518118e-45!GO:0044267;cellular protein metabolic process;2.94527198626373e-45!GO:0044260;cellular macromolecule metabolic process;1.06513524952462e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.21208174652845e-44!GO:0010467;gene expression;6.85885737884402e-43!GO:0033036;macromolecule localization;6.11394722191657e-42!GO:0016071;mRNA metabolic process;7.83137000321287e-41!GO:0015031;protein transport;2.22413643960355e-40!GO:0003735;structural constituent of ribosome;1.1540639235835e-39!GO:0005829;cytosol;2.8685300807862e-39!GO:0006259;DNA metabolic process;1.5593719512664e-38!GO:0031090;organelle membrane;1.61203423761538e-38!GO:0008104;protein localization;1.4424559489871e-37!GO:0008380;RNA splicing;2.44322906679937e-37!GO:0006996;organelle organization and biogenesis;4.8273002606666e-37!GO:0044249;cellular biosynthetic process;5.06373191102121e-37!GO:0045184;establishment of protein localization;6.63228287804259e-37!GO:0065003;macromolecular complex assembly;3.63278350234756e-36!GO:0009058;biosynthetic process;5.17075312484887e-36!GO:0044429;mitochondrial part;1.29818685294674e-35!GO:0006397;mRNA processing;1.41069324182965e-35!GO:0009059;macromolecule biosynthetic process;1.60350647229852e-35!GO:0033279;ribosomal subunit;2.52252635875998e-35!GO:0007049;cell cycle;2.97562731731111e-35!GO:0031967;organelle envelope;3.79999920234388e-35!GO:0031975;envelope;8.99383587093406e-35!GO:0046907;intracellular transport;2.93018458993815e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.4530787267473e-32!GO:0022607;cellular component assembly;1.09151473398793e-31!GO:0005654;nucleoplasm;2.97182754634569e-31!GO:0006886;intracellular protein transport;6.66241511448319e-29!GO:0000166;nucleotide binding;4.71676967667588e-28!GO:0005681;spliceosome;1.49754497507226e-27!GO:0022402;cell cycle process;4.84158716884655e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.6714928667284e-26!GO:0044451;nucleoplasm part;1.04299448763497e-25!GO:0003676;nucleic acid binding;6.14694767732659e-24!GO:0005694;chromosome;3.18440329490526e-23!GO:0000278;mitotic cell cycle;7.13135167880988e-23!GO:0016462;pyrophosphatase activity;1.77835230889172e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.40955790974589e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.71799692063632e-22!GO:0051649;establishment of cellular localization;5.02348165311294e-22!GO:0051641;cellular localization;5.83179942591592e-22!GO:0017111;nucleoside-triphosphatase activity;6.75356138573272e-22!GO:0006974;response to DNA damage stimulus;8.3690933349326e-22!GO:0044445;cytosolic part;1.29425589181715e-21!GO:0005740;mitochondrial envelope;4.8387659560991e-21!GO:0016874;ligase activity;8.1806838025363e-21!GO:0019866;organelle inner membrane;1.43259301117432e-20!GO:0044427;chromosomal part;3.07874680717074e-20!GO:0032553;ribonucleotide binding;3.41092943824097e-20!GO:0032555;purine ribonucleotide binding;3.41092943824097e-20!GO:0031966;mitochondrial membrane;5.34219446777428e-20!GO:0016070;RNA metabolic process;1.28412618287318e-19!GO:0017076;purine nucleotide binding;1.29098195494179e-19!GO:0022618;protein-RNA complex assembly;1.94000864533444e-19!GO:0006119;oxidative phosphorylation;4.43382340088137e-19!GO:0008134;transcription factor binding;1.11937515739578e-18!GO:0005730;nucleolus;1.578926925306e-18!GO:0005743;mitochondrial inner membrane;2.05393800236582e-18!GO:0015935;small ribosomal subunit;3.7837523424837e-18!GO:0015934;large ribosomal subunit;5.25265021988618e-18!GO:0006512;ubiquitin cycle;6.05546257984245e-18!GO:0051276;chromosome organization and biogenesis;6.07867976826716e-18!GO:0000087;M phase of mitotic cell cycle;7.75087532351277e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.12754640391748e-18!GO:0044265;cellular macromolecule catabolic process;8.70092296081405e-18!GO:0022403;cell cycle phase;9.89529870747747e-18!GO:0006457;protein folding;1.01180186788627e-17!GO:0031980;mitochondrial lumen;1.0833294437603e-17!GO:0005759;mitochondrial matrix;1.0833294437603e-17!GO:0006281;DNA repair;1.23382713938922e-17!GO:0019941;modification-dependent protein catabolic process;1.39796943566335e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.39796943566335e-17!GO:0007067;mitosis;1.46179685421378e-17!GO:0043285;biopolymer catabolic process;2.37283333542469e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.62919939696781e-17!GO:0005524;ATP binding;2.81842313772205e-17!GO:0044257;cellular protein catabolic process;3.03401390541737e-17!GO:0012505;endomembrane system;5.30329839404325e-17!GO:0032559;adenyl ribonucleotide binding;5.30329839404325e-17!GO:0044455;mitochondrial membrane part;6.7014637080043e-17!GO:0006605;protein targeting;2.28269747828056e-16!GO:0048770;pigment granule;2.61884415608841e-16!GO:0042470;melanosome;2.61884415608841e-16!GO:0030554;adenyl nucleotide binding;2.80607007220752e-16!GO:0051301;cell division;5.84002120553184e-16!GO:0012501;programmed cell death;9.72037858886643e-16!GO:0006260;DNA replication;1.00918343245965e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.5534367571468e-15!GO:0000279;M phase;1.58902102299469e-15!GO:0006915;apoptosis;1.81477213649191e-15!GO:0006366;transcription from RNA polymerase II promoter;2.01947187743882e-15!GO:0009719;response to endogenous stimulus;3.31658397253294e-15!GO:0009057;macromolecule catabolic process;3.7152484832543e-15!GO:0008135;translation factor activity, nucleic acid binding;3.73759677441347e-15!GO:0043412;biopolymer modification;4.3145831310454e-15!GO:0005635;nuclear envelope;1.15599661178817e-14!GO:0030163;protein catabolic process;1.16702992429157e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;2.37575074657827e-14!GO:0008219;cell death;2.75680618218053e-14!GO:0016265;death;2.75680618218053e-14!GO:0005783;endoplasmic reticulum;3.5191107113857e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.72409375922075e-14!GO:0000375;RNA splicing, via transesterification reactions;4.72409375922075e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.72409375922075e-14!GO:0042254;ribosome biogenesis and assembly;6.62545952805059e-14!GO:0006323;DNA packaging;1.04116094692084e-13!GO:0051726;regulation of cell cycle;1.07468257234636e-13!GO:0005761;mitochondrial ribosome;1.07468257234636e-13!GO:0000313;organellar ribosome;1.07468257234636e-13!GO:0000074;regulation of progression through cell cycle;1.19840073342069e-13!GO:0006913;nucleocytoplasmic transport;1.43868074859419e-13!GO:0044248;cellular catabolic process;1.66902994187647e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.93096351690971e-13!GO:0006464;protein modification process;3.14489178815961e-13!GO:0005746;mitochondrial respiratory chain;3.24796830261225e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.05375657036583e-13!GO:0051169;nuclear transport;5.2944432716644e-13!GO:0043687;post-translational protein modification;6.27439704491728e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.45963211212798e-13!GO:0016604;nuclear body;7.23548194257151e-13!GO:0031965;nuclear membrane;8.38154664025911e-13!GO:0044453;nuclear membrane part;1.18347414739762e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.19206006741027e-12!GO:0003954;NADH dehydrogenase activity;1.19206006741027e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19206006741027e-12!GO:0051082;unfolded protein binding;1.30755276943256e-12!GO:0016887;ATPase activity;2.92510442441459e-12!GO:0000785;chromatin;3.45514763996478e-12!GO:0006413;translational initiation;5.11124160005928e-12!GO:0042623;ATPase activity, coupled;8.94144673305311e-12!GO:0048523;negative regulation of cellular process;1.02349274212245e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02380672848751e-11!GO:0003743;translation initiation factor activity;1.19910729785624e-11!GO:0005794;Golgi apparatus;1.3276963220393e-11!GO:0003712;transcription cofactor activity;1.3333729480555e-11!GO:0048193;Golgi vesicle transport;1.40776805703821e-11!GO:0006446;regulation of translational initiation;2.24123094114948e-11!GO:0004386;helicase activity;2.57983083839696e-11!GO:0044432;endoplasmic reticulum part;3.70598123878386e-11!GO:0008639;small protein conjugating enzyme activity;4.29788503667769e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.31147141480879e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.37099537834153e-11!GO:0042773;ATP synthesis coupled electron transport;5.37099537834153e-11!GO:0050794;regulation of cellular process;5.62167290767615e-11!GO:0005643;nuclear pore;8.50537131589814e-11!GO:0004842;ubiquitin-protein ligase activity;1.00443902303866e-10!GO:0051186;cofactor metabolic process;1.02908932913396e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.05557105887698e-10!GO:0045271;respiratory chain complex I;1.05557105887698e-10!GO:0005747;mitochondrial respiratory chain complex I;1.05557105887698e-10!GO:0019787;small conjugating protein ligase activity;1.30058689005651e-10!GO:0065004;protein-DNA complex assembly;1.32583912736911e-10!GO:0042981;regulation of apoptosis;1.5925637171387e-10!GO:0043067;regulation of programmed cell death;1.5925637171387e-10!GO:0050657;nucleic acid transport;1.779235608644e-10!GO:0051236;establishment of RNA localization;1.779235608644e-10!GO:0050658;RNA transport;1.779235608644e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.91385522624429e-10!GO:0006403;RNA localization;1.93228310941066e-10!GO:0006333;chromatin assembly or disassembly;2.30810046988925e-10!GO:0006461;protein complex assembly;2.35942277889249e-10!GO:0016607;nuclear speck;2.84427622509473e-10!GO:0006399;tRNA metabolic process;2.85224133893306e-10!GO:0048519;negative regulation of biological process;2.91518841275309e-10!GO:0017038;protein import;3.08146252329232e-10!GO:0016881;acid-amino acid ligase activity;5.70198907564096e-10!GO:0009055;electron carrier activity;5.84805119632203e-10!GO:0051246;regulation of protein metabolic process;9.13548483544373e-10!GO:0016192;vesicle-mediated transport;1.71186698285586e-09!GO:0015630;microtubule cytoskeleton;3.73537092487166e-09!GO:0006732;coenzyme metabolic process;4.04275008915177e-09!GO:0008026;ATP-dependent helicase activity;4.30192533869761e-09!GO:0006364;rRNA processing;5.33989225864105e-09!GO:0016072;rRNA metabolic process;7.25758427702854e-09!GO:0008565;protein transporter activity;7.591853142899e-09!GO:0031324;negative regulation of cellular metabolic process;1.08513326742002e-08!GO:0016568;chromatin modification;1.26556622452056e-08!GO:0005819;spindle;1.35820188954912e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43886048919632e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.49375729877616e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.50369584559642e-08!GO:0046930;pore complex;1.66124084025505e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.66709272182497e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.66709272182497e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.66709272182497e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.7423562769666e-08!GO:0051028;mRNA transport;2.05762467256676e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.31567776058979e-08!GO:0005667;transcription factor complex;2.46700337489668e-08!GO:0065002;intracellular protein transport across a membrane;2.55803314604905e-08!GO:0043038;amino acid activation;2.73796152592759e-08!GO:0006418;tRNA aminoacylation for protein translation;2.73796152592759e-08!GO:0043039;tRNA aminoacylation;2.73796152592759e-08!GO:0043566;structure-specific DNA binding;3.00982990135655e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.23091228920062e-08!GO:0005789;endoplasmic reticulum membrane;3.23091228920062e-08!GO:0032446;protein modification by small protein conjugation;3.39639690332038e-08!GO:0000775;chromosome, pericentric region;3.46065131312873e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.48882029517879e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.76004335640776e-08!GO:0051170;nuclear import;4.84503572149863e-08!GO:0016567;protein ubiquitination;5.48071863550698e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.59208320103661e-08!GO:0003924;GTPase activity;7.03090654111078e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.81772443225184e-08!GO:0006261;DNA-dependent DNA replication;9.10810099667405e-08!GO:0006163;purine nucleotide metabolic process;9.39651383516856e-08!GO:0048475;coated membrane;9.84553227474805e-08!GO:0030117;membrane coat;9.84553227474805e-08!GO:0009259;ribonucleotide metabolic process;1.01473625377415e-07!GO:0016779;nucleotidyltransferase activity;1.05228591872952e-07!GO:0009056;catabolic process;1.1087578082948e-07!GO:0048522;positive regulation of cellular process;1.14021305514597e-07!GO:0051188;cofactor biosynthetic process;1.37575011630041e-07!GO:0006164;purine nucleotide biosynthetic process;1.42439013259312e-07!GO:0006606;protein import into nucleus;1.47780825926263e-07!GO:0043069;negative regulation of programmed cell death;1.52944184208206e-07!GO:0030120;vesicle coat;1.57307695337132e-07!GO:0030662;coated vesicle membrane;1.57307695337132e-07!GO:0015986;ATP synthesis coupled proton transport;1.68705379616662e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.68705379616662e-07!GO:0016787;hydrolase activity;1.97209531723432e-07!GO:0016563;transcription activator activity;2.2473564500124e-07!GO:0007051;spindle organization and biogenesis;2.27326629337677e-07!GO:0009260;ribonucleotide biosynthetic process;2.6261323586614e-07!GO:0043066;negative regulation of apoptosis;3.58321796046807e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.85869399752971e-07!GO:0009892;negative regulation of metabolic process;3.87354064045512e-07!GO:0007005;mitochondrion organization and biogenesis;3.93937256193374e-07!GO:0005813;centrosome;4.0904682121516e-07!GO:0005793;ER-Golgi intermediate compartment;4.38757568460016e-07!GO:0000245;spliceosome assembly;4.80569012068342e-07!GO:0006334;nucleosome assembly;5.49623306684813e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.47527468089482e-07!GO:0009150;purine ribonucleotide metabolic process;6.60848490147952e-07!GO:0031497;chromatin assembly;6.85929073618722e-07!GO:0050789;regulation of biological process;6.86639250254245e-07!GO:0006916;anti-apoptosis;8.05001164080848e-07!GO:0003697;single-stranded DNA binding;8.41256956576068e-07!GO:0005815;microtubule organizing center;8.44688236214384e-07!GO:0005768;endosome;9.52967420187815e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.03762887164819e-06!GO:0009060;aerobic respiration;1.06205962825454e-06!GO:0009108;coenzyme biosynthetic process;1.24830460397122e-06!GO:0003682;chromatin binding;1.65211744349964e-06!GO:0043623;cellular protein complex assembly;1.83439454039616e-06!GO:0019829;cation-transporting ATPase activity;1.95784666900361e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.99663966929604e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.03466043488657e-06!GO:0016481;negative regulation of transcription;2.16493509371099e-06!GO:0004298;threonine endopeptidase activity;2.3202257679221e-06!GO:0016564;transcription repressor activity;2.33033790077588e-06!GO:0006754;ATP biosynthetic process;2.43646438994911e-06!GO:0006753;nucleoside phosphate metabolic process;2.43646438994911e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.46492770036864e-06!GO:0006793;phosphorus metabolic process;2.98024447333775e-06!GO:0006796;phosphate metabolic process;2.98024447333775e-06!GO:0003713;transcription coactivator activity;3.2466646191646e-06!GO:0045786;negative regulation of progression through cell cycle;3.32142222346071e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.14010211645017e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.14010211645017e-06!GO:0009141;nucleoside triphosphate metabolic process;4.45447364935034e-06!GO:0042802;identical protein binding;4.48004939875508e-06!GO:0051427;hormone receptor binding;4.78966615518885e-06!GO:0045333;cellular respiration;4.78966615518885e-06!GO:0005525;GTP binding;4.8123545373382e-06!GO:0000151;ubiquitin ligase complex;5.07159094407988e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43432666068193e-06!GO:0006099;tricarboxylic acid cycle;5.91262169078918e-06!GO:0046356;acetyl-CoA catabolic process;5.91262169078918e-06!GO:0046034;ATP metabolic process;6.46799024599939e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.54051861117432e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.54051861117432e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.58950265922661e-06!GO:0016740;transferase activity;6.76866921547725e-06!GO:0006950;response to stress;7.00805989581246e-06!GO:0006752;group transfer coenzyme metabolic process;7.48865010618052e-06!GO:0035257;nuclear hormone receptor binding;9.39974977569508e-06!GO:0045259;proton-transporting ATP synthase complex;9.40511577970451e-06!GO:0051329;interphase of mitotic cell cycle;1.01301248148091e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02613695898586e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.02613695898586e-05!GO:0003724;RNA helicase activity;1.23713462079762e-05!GO:0005657;replication fork;1.40040121766821e-05!GO:0003899;DNA-directed RNA polymerase activity;1.41515956425646e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.49622826966557e-05!GO:0051168;nuclear export;1.70798945281404e-05!GO:0006084;acetyl-CoA metabolic process;1.8066759536378e-05!GO:0009109;coenzyme catabolic process;2.22463236226045e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32838729710475e-05!GO:0006613;cotranslational protein targeting to membrane;2.35181680462207e-05!GO:0048471;perinuclear region of cytoplasm;2.36943302445647e-05!GO:0003690;double-stranded DNA binding;2.48456918127782e-05!GO:0019222;regulation of metabolic process;2.65479543195676e-05!GO:0016310;phosphorylation;2.89790697329015e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.14892434119145e-05!GO:0007243;protein kinase cascade;3.24630759125749e-05!GO:0051325;interphase;3.25429525256873e-05!GO:0051187;cofactor catabolic process;3.44814531264199e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.67032678011793e-05!GO:0045941;positive regulation of transcription;4.73065559377483e-05!GO:0048518;positive regulation of biological process;5.44134177895528e-05!GO:0005798;Golgi-associated vesicle;5.98014828625727e-05!GO:0006402;mRNA catabolic process;6.2253666780941e-05!GO:0008094;DNA-dependent ATPase activity;6.64247025916659e-05!GO:0031252;leading edge;7.24519211473841e-05!GO:0007264;small GTPase mediated signal transduction;7.24519211473841e-05!GO:0009117;nucleotide metabolic process;7.44759864706661e-05!GO:0009967;positive regulation of signal transduction;8.55099321170649e-05!GO:0032561;guanyl ribonucleotide binding;8.72459561760862e-05!GO:0019001;guanyl nucleotide binding;8.72459561760862e-05!GO:0051052;regulation of DNA metabolic process;9.1952392205285e-05!GO:0000075;cell cycle checkpoint;9.2643035382885e-05!GO:0003714;transcription corepressor activity;9.35314460777258e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000105709939375936!GO:0000315;organellar large ribosomal subunit;0.000105709939375936!GO:0000786;nucleosome;0.000110191573683317!GO:0003729;mRNA binding;0.000119297241245777!GO:0007010;cytoskeleton organization and biogenesis;0.000120094613302787!GO:0044431;Golgi apparatus part;0.000139168739041839!GO:0007052;mitotic spindle organization and biogenesis;0.000139814440457162!GO:0000776;kinetochore;0.000145021968632283!GO:0044440;endosomal part;0.000150928904193749!GO:0010008;endosome membrane;0.000150928904193749!GO:0007059;chromosome segregation;0.00015598183817899!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000156531833455054!GO:0016363;nuclear matrix;0.000163284268556802!GO:0006302;double-strand break repair;0.000163784021261091!GO:0046983;protein dimerization activity;0.000174793788674107!GO:0045454;cell redox homeostasis;0.000177522510980558!GO:0000314;organellar small ribosomal subunit;0.000177522510980558!GO:0005763;mitochondrial small ribosomal subunit;0.000177522510980558!GO:0007088;regulation of mitosis;0.00017907485721464!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000186693125291302!GO:0003702;RNA polymerase II transcription factor activity;0.000189016300760945!GO:0006401;RNA catabolic process;0.000209566496401523!GO:0005856;cytoskeleton;0.000222644968284624!GO:0043021;ribonucleoprotein binding;0.000249308681231821!GO:0006352;transcription initiation;0.000259918605039576!GO:0006417;regulation of translation;0.000275038628091111!GO:0019899;enzyme binding;0.000282297921208234!GO:0005788;endoplasmic reticulum lumen;0.000285327051991371!GO:0008186;RNA-dependent ATPase activity;0.000345112337395031!GO:0006612;protein targeting to membrane;0.000349098192633469!GO:0016251;general RNA polymerase II transcription factor activity;0.000378693329060419!GO:0031988;membrane-bound vesicle;0.000389461428078!GO:0005770;late endosome;0.000392263856468253!GO:0065009;regulation of a molecular function;0.000411194095325531!GO:0016023;cytoplasmic membrane-bound vesicle;0.000518681032972455!GO:0005048;signal sequence binding;0.000565104187644342!GO:0030118;clathrin coat;0.000599263702657749!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000650216010692752!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000663534429036701!GO:0065007;biological regulation;0.000687649638634158!GO:0030867;rough endoplasmic reticulum membrane;0.00072013507948612!GO:0043065;positive regulation of apoptosis;0.00072809268997757!GO:0016491;oxidoreductase activity;0.00075019513490135!GO:0008654;phospholipid biosynthetic process;0.000767807606516601!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000912380496996468!GO:0016853;isomerase activity;0.00091684975539229!GO:0051098;regulation of binding;0.000920784399642894!GO:0048468;cell development;0.000920784399642894!GO:0043068;positive regulation of programmed cell death;0.000934666801439068!GO:0004004;ATP-dependent RNA helicase activity;0.000956452645482411!GO:0005791;rough endoplasmic reticulum;0.000963631929955372!GO:0031326;regulation of cellular biosynthetic process;0.000975736617004597!GO:0045892;negative regulation of transcription, DNA-dependent;0.000979029964192496!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103627782362532!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00108469234893006!GO:0051789;response to protein stimulus;0.00109888630530061!GO:0006986;response to unfolded protein;0.00109888630530061!GO:0030132;clathrin coat of coated pit;0.0011355355606731!GO:0003684;damaged DNA binding;0.00123221619393008!GO:0051252;regulation of RNA metabolic process;0.00125009467095972!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00125009467095972!GO:0009112;nucleobase metabolic process;0.00139183057186138!GO:0008632;apoptotic program;0.00141480177525463!GO:0000139;Golgi membrane;0.00146290804446824!GO:0031323;regulation of cellular metabolic process;0.00152440879329976!GO:0051920;peroxiredoxin activity;0.00155117924027239!GO:0008033;tRNA processing;0.00156693942402682!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00160164275609324!GO:0044452;nucleolar part;0.00160289456452044!GO:0032508;DNA duplex unwinding;0.00161561787425595!GO:0032392;DNA geometric change;0.00161561787425595!GO:0046822;regulation of nucleocytoplasmic transport;0.00171742667596527!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00176850662610066!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00176850662610066!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00176850662610066!GO:0019843;rRNA binding;0.00186657486036106!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00186657486036106!GO:0006405;RNA export from nucleus;0.00190798600348988!GO:0016859;cis-trans isomerase activity;0.00196759530069078!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00197645371857151!GO:0033116;ER-Golgi intermediate compartment membrane;0.00204998391750635!GO:0005684;U2-dependent spliceosome;0.00211562409286452!GO:0005773;vacuole;0.0021502785380148!GO:0003678;DNA helicase activity;0.00215431435337434!GO:0001726;ruffle;0.00217818152718351!GO:0030036;actin cytoskeleton organization and biogenesis;0.00224990408396089!GO:0030133;transport vesicle;0.00230910107143416!GO:0051101;regulation of DNA binding;0.00230910107143416!GO:0046483;heterocycle metabolic process;0.00233817182617615!GO:0005874;microtubule;0.00235684121886238!GO:0006275;regulation of DNA replication;0.00241759519665558!GO:0030658;transport vesicle membrane;0.00242359768661549!GO:0004674;protein serine/threonine kinase activity;0.00242359768661549!GO:0009889;regulation of biosynthetic process;0.00243668358100955!GO:0007017;microtubule-based process;0.00253541447207855!GO:0006268;DNA unwinding during replication;0.00259525377683982!GO:0003711;transcription elongation regulator activity;0.00265974380129522!GO:0005637;nuclear inner membrane;0.00267752387047411!GO:0031982;vesicle;0.00269371048020112!GO:0006310;DNA recombination;0.00270149947994431!GO:0006414;translational elongation;0.00275005367030121!GO:0030119;AP-type membrane coat adaptor complex;0.00275163528140182!GO:0006839;mitochondrial transport;0.00279795600186463!GO:0005885;Arp2/3 protein complex;0.00279795600186463!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302055924861299!GO:0016197;endosome transport;0.00302228312115545!GO:0030031;cell projection biogenesis;0.00306189180310378!GO:0048500;signal recognition particle;0.00306518692591538!GO:0035258;steroid hormone receptor binding;0.00307423237784032!GO:0043488;regulation of mRNA stability;0.00313760149793576!GO:0043487;regulation of RNA stability;0.00313760149793576!GO:0043681;protein import into mitochondrion;0.00316385049481461!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00316526792566077!GO:0030663;COPI coated vesicle membrane;0.0031705774992124!GO:0030126;COPI vesicle coat;0.0031705774992124!GO:0003746;translation elongation factor activity;0.0032421962059412!GO:0043624;cellular protein complex disassembly;0.00332792097571508!GO:0008250;oligosaccharyl transferase complex;0.00334230298662664!GO:0030880;RNA polymerase complex;0.00336403531276213!GO:0008022;protein C-terminus binding;0.00341889840558004!GO:0006383;transcription from RNA polymerase III promoter;0.00346398117672368!GO:0051087;chaperone binding;0.003471943084996!GO:0030131;clathrin adaptor complex;0.00364199449584344!GO:0008361;regulation of cell size;0.00371539985782595!GO:0030521;androgen receptor signaling pathway;0.00378286115654495!GO:0005905;coated pit;0.00402628594723045!GO:0000049;tRNA binding;0.00423441525585176!GO:0032984;macromolecular complex disassembly;0.00424668919263624!GO:0005876;spindle microtubule;0.0043850362891935!GO:0008139;nuclear localization sequence binding;0.00455073070279482!GO:0009116;nucleoside metabolic process;0.00459746738091116!GO:0006611;protein export from nucleus;0.00471840886318303!GO:0031410;cytoplasmic vesicle;0.00483304615578521!GO:0006626;protein targeting to mitochondrion;0.00500145361556996!GO:0042770;DNA damage response, signal transduction;0.00500262276926797!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00502872834802806!GO:0001889;liver development;0.00520612676639992!GO:0000323;lytic vacuole;0.00523213547499122!GO:0005764;lysosome;0.00523213547499122!GO:0016049;cell growth;0.00523213547499122!GO:0000059;protein import into nucleus, docking;0.00527479687525568!GO:0005769;early endosome;0.00539234747975701!GO:0000922;spindle pole;0.00541711154152385!GO:0008312;7S RNA binding;0.00562700783214665!GO:0008283;cell proliferation;0.00563422487249116!GO:0043241;protein complex disassembly;0.00578955150429386!GO:0006270;DNA replication initiation;0.00587692601365583!GO:0001558;regulation of cell growth;0.0058979649543718!GO:0000228;nuclear chromosome;0.006067477156685!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00617988690276648!GO:0006350;transcription;0.00618412943113374!GO:0000082;G1/S transition of mitotic cell cycle;0.00625485252622633!GO:0000792;heterochromatin;0.00632331172281996!GO:0007093;mitotic cell cycle checkpoint;0.00636681980350815!GO:0046966;thyroid hormone receptor binding;0.00661512690473277!GO:0032507;maintenance of cellular protein localization;0.00671615169747203!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00695955408770382!GO:0000428;DNA-directed RNA polymerase complex;0.00695955408770382!GO:0006338;chromatin remodeling;0.00706573349223857!GO:0030660;Golgi-associated vesicle membrane;0.00709968293049162!GO:0015631;tubulin binding;0.00710735640540156!GO:0015980;energy derivation by oxidation of organic compounds;0.00710923052194965!GO:0006607;NLS-bearing substrate import into nucleus;0.00721035639300327!GO:0009893;positive regulation of metabolic process;0.00721035639300327!GO:0031968;organelle outer membrane;0.00728537666168523!GO:0030137;COPI-coated vesicle;0.00762205009322716!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00777093378154122!GO:0031072;heat shock protein binding;0.00777093378154122!GO:0004527;exonuclease activity;0.0080701814704176!GO:0030029;actin filament-based process;0.00829236886117329!GO:0050662;coenzyme binding;0.00843588489476829!GO:0006979;response to oxidative stress;0.00845242400171588!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00845242400171588!GO:0045047;protein targeting to ER;0.00845242400171588!GO:0019867;outer membrane;0.00852252861374818!GO:0007006;mitochondrial membrane organization and biogenesis;0.00864061439745443!GO:0006091;generation of precursor metabolites and energy;0.00870707655527398!GO:0005669;transcription factor TFIID complex;0.00888679131309349!GO:0030134;ER to Golgi transport vesicle;0.00909780420838593!GO:0006144;purine base metabolic process;0.00913823530620051!GO:0030125;clathrin vesicle coat;0.00961123328948149!GO:0030665;clathrin coated vesicle membrane;0.00961123328948149!GO:0008601;protein phosphatase type 2A regulator activity;0.00964246920469809!GO:0031124;mRNA 3'-end processing;0.00964746460502856!GO:0006284;base-excision repair;0.00994491074609716!GO:0004576;oligosaccharyl transferase activity;0.00994491074609716!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0100891846706624!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0100891846706624!GO:0016044;membrane organization and biogenesis;0.0102870015388984!GO:0008234;cysteine-type peptidase activity;0.0103435980652158!GO:0009165;nucleotide biosynthetic process;0.0104071284415878!GO:0046489;phosphoinositide biosynthetic process;0.0104972367191653!GO:0008637;apoptotic mitochondrial changes;0.0105193356985557!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0105213068218522!GO:0015399;primary active transmembrane transporter activity;0.0105213068218522!GO:0043022;ribosome binding;0.0105695955567953!GO:0046982;protein heterodimerization activity;0.01087515489771!GO:0005741;mitochondrial outer membrane;0.0109146575924274!GO:0048037;cofactor binding;0.0109951181968173!GO:0000159;protein phosphatase type 2A complex;0.0110645273919012!GO:0006376;mRNA splice site selection;0.0112394655732776!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0112394655732776!GO:0031625;ubiquitin protein ligase binding;0.0112394655732776!GO:0018196;peptidyl-asparagine modification;0.0112394655732776!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0112394655732776!GO:0030127;COPII vesicle coat;0.0117247312575483!GO:0012507;ER to Golgi transport vesicle membrane;0.0117247312575483!GO:0016584;nucleosome positioning;0.0118633492135617!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.011949977649169!GO:0007346;regulation of progression through mitotic cell cycle;0.012121094007777!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0121947873522346!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0121947873522346!GO:0016272;prefoldin complex;0.0122729343671973!GO:0032200;telomere organization and biogenesis;0.012442715200356!GO:0000723;telomere maintenance;0.012442715200356!GO:0031325;positive regulation of cellular metabolic process;0.0125222247775526!GO:0008629;induction of apoptosis by intracellular signals;0.0125934096874741!GO:0031529;ruffle organization and biogenesis;0.0130670450001035!GO:0048487;beta-tubulin binding;0.0131131431601322!GO:0006520;amino acid metabolic process;0.0132969223991456!GO:0050790;regulation of catalytic activity;0.0133740725387873!GO:0016791;phosphoric monoester hydrolase activity;0.0138746122596465!GO:0050681;androgen receptor binding;0.0144669792300424!GO:0030518;steroid hormone receptor signaling pathway;0.0147648695352484!GO:0051651;maintenance of cellular localization;0.01484654650242!GO:0030027;lamellipodium;0.0148678889523716!GO:0006289;nucleotide-excision repair;0.0151299333506748!GO:0043596;nuclear replication fork;0.015555383991746!GO:0017166;vinculin binding;0.0155952889168653!GO:0010468;regulation of gene expression;0.0155952889168653!GO:0030176;integral to endoplasmic reticulum membrane;0.0160415989494992!GO:0006213;pyrimidine nucleoside metabolic process;0.0162461896851376!GO:0008092;cytoskeletal protein binding;0.0162562311385251!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.016651530719972!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0169115110354441!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0169396291463072!GO:0006354;RNA elongation;0.0169566622196392!GO:0005862;muscle thin filament tropomyosin;0.0176091958723447!GO:0042393;histone binding;0.0176091958723447!GO:0043414;biopolymer methylation;0.0185548549420793!GO:0051540;metal cluster binding;0.0189660909704932!GO:0051536;iron-sulfur cluster binding;0.0189660909704932!GO:0005832;chaperonin-containing T-complex;0.0189741649034068!GO:0006595;polyamine metabolic process;0.0192486439824824!GO:0006818;hydrogen transport;0.0193122648589976!GO:0015992;proton transport;0.0195930474341264!GO:0000096;sulfur amino acid metabolic process;0.0198088966147915!GO:0004518;nuclease activity;0.0198469065193167!GO:0022411;cellular component disassembly;0.0199128274931885!GO:0008168;methyltransferase activity;0.0201610314044301!GO:0000339;RNA cap binding;0.0203390150408876!GO:0045334;clathrin-coated endocytic vesicle;0.0204855768583385!GO:0019752;carboxylic acid metabolic process;0.0204977572123834!GO:0051287;NAD binding;0.0205448553805522!GO:0046467;membrane lipid biosynthetic process;0.0213126091578192!GO:0006509;membrane protein ectodomain proteolysis;0.0213729438946579!GO:0033619;membrane protein proteolysis;0.0213729438946579!GO:0007021;tubulin folding;0.0214048695309464!GO:0007242;intracellular signaling cascade;0.021681907014767!GO:0046474;glycerophospholipid biosynthetic process;0.0217567263567151!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0219579060291905!GO:0016741;transferase activity, transferring one-carbon groups;0.0219892470736083!GO:0006360;transcription from RNA polymerase I promoter;0.0222516954714319!GO:0006082;organic acid metabolic process;0.0227772560251333!GO:0048146;positive regulation of fibroblast proliferation;0.0227772560251333!GO:0022415;viral reproductive process;0.0235493208717084!GO:0000209;protein polyubiquitination;0.0235493208717084!GO:0006892;post-Golgi vesicle-mediated transport;0.0235968794516311!GO:0007050;cell cycle arrest;0.024196498652808!GO:0051223;regulation of protein transport;0.0242982945496395!GO:0009119;ribonucleoside metabolic process;0.0251484510454109!GO:0006984;ER-nuclear signaling pathway;0.0251605165107219!GO:0005149;interleukin-1 receptor binding;0.0251605165107219!GO:0003756;protein disulfide isomerase activity;0.0254000076912217!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0254000076912217!GO:0043189;H4/H2A histone acetyltransferase complex;0.0257681969054287!GO:0008538;proteasome activator activity;0.0259537633556177!GO:0009303;rRNA transcription;0.0260705579689741!GO:0001836;release of cytochrome c from mitochondria;0.026215823303479!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0264607718127542!GO:0015002;heme-copper terminal oxidase activity;0.0264607718127542!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0264607718127542!GO:0004129;cytochrome-c oxidase activity;0.0264607718127542!GO:0047485;protein N-terminus binding;0.0266074535773143!GO:0042026;protein refolding;0.0269342244234746!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0273148109111355!GO:0043601;nuclear replisome;0.0276707195359775!GO:0030894;replisome;0.0276707195359775!GO:0000123;histone acetyltransferase complex;0.0293131238350075!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.030133604785404!GO:0008652;amino acid biosynthetic process;0.0304284582570142!GO:0048144;fibroblast proliferation;0.0304284582570142!GO:0048145;regulation of fibroblast proliferation;0.0304284582570142!GO:0006917;induction of apoptosis;0.0304628192453675!GO:0016311;dephosphorylation;0.0305776442659524!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309273968556479!GO:0043492;ATPase activity, coupled to movement of substances;0.0319498570881585!GO:0007265;Ras protein signal transduction;0.0326402258295905!GO:0006378;mRNA polyadenylation;0.0329849732342065!GO:0000819;sister chromatid segregation;0.0332601708188058!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0334856897372572!GO:0032259;methylation;0.0337635883733423!GO:0008097;5S rRNA binding;0.033962708446863!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0342290399591588!GO:0000790;nuclear chromatin;0.0342883289856257!GO:0000781;chromosome, telomeric region;0.0346955629104809!GO:0030032;lamellipodium biogenesis;0.0346955629104809!GO:0045792;negative regulation of cell size;0.0349828079267338!GO:0035267;NuA4 histone acetyltransferase complex;0.0353483492057471!GO:0030128;clathrin coat of endocytic vesicle;0.0355135999776816!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0355135999776816!GO:0030122;AP-2 adaptor complex;0.0355135999776816!GO:0030100;regulation of endocytosis;0.0355135999776816!GO:0030384;phosphoinositide metabolic process;0.0357207867655776!GO:0008426;protein kinase C inhibitor activity;0.0358866717191612!GO:0022890;inorganic cation transmembrane transporter activity;0.0359907920193305!GO:0000725;recombinational repair;0.0362062611632789!GO:0000724;double-strand break repair via homologous recombination;0.0362062611632789!GO:0031123;RNA 3'-end processing;0.0365533758324338!GO:0008047;enzyme activator activity;0.0369859160139204!GO:0000070;mitotic sister chromatid segregation;0.0385958122324452!GO:0051235;maintenance of localization;0.0386101121872596!GO:0006650;glycerophospholipid metabolic process;0.0386181114612191!GO:0012502;induction of programmed cell death;0.0386205766021071!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0388582665065243!GO:0000178;exosome (RNase complex);0.0389307429776573!GO:0006730;one-carbon compound metabolic process;0.0392985476005021!GO:0004710;MAP/ERK kinase kinase activity;0.0401080551611125!GO:0008243;plasminogen activator activity;0.041226311765385!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0412591442254099!GO:0016126;sterol biosynthetic process;0.0414598587968269!GO:0040008;regulation of growth;0.0416007894566275!GO:0000152;nuclear ubiquitin ligase complex;0.0416007894566275!GO:0008287;protein serine/threonine phosphatase complex;0.041684498632849!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.041684498632849!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0419420067615079!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0419420067615079!GO:0051338;regulation of transferase activity;0.04228895732654!GO:0045947;negative regulation of translational initiation;0.04228895732654!GO:0009081;branched chain family amino acid metabolic process;0.0426554979893915!GO:0051053;negative regulation of DNA metabolic process;0.0427965029933918!GO:0004003;ATP-dependent DNA helicase activity;0.0430729396873944!GO:0030308;negative regulation of cell growth;0.0430729396873944!GO:0044450;microtubule organizing center part;0.0433694601999194!GO:0006564;L-serine biosynthetic process;0.0434514214252553!GO:0051539;4 iron, 4 sulfur cluster binding;0.0446462099277674!GO:0019783;small conjugating protein-specific protease activity;0.0451280581525386!GO:0035035;histone acetyltransferase binding;0.0452771579228053!GO:0006506;GPI anchor biosynthetic process;0.0453180681166658!GO:0004239;methionyl aminopeptidase activity;0.0454505005159534!GO:0033157;regulation of intracellular protein transport;0.0456866019665814!GO:0042306;regulation of protein import into nucleus;0.0456866019665814!GO:0008536;Ran GTPase binding;0.0458848519508602!GO:0008180;signalosome;0.0463293436396227!GO:0031371;ubiquitin conjugating enzyme complex;0.0466923402006565!GO:0004680;casein kinase activity;0.0467781911322582!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0473458795205896!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0475425042728752!GO:0000118;histone deacetylase complex;0.0476098208149778!GO:0005784;translocon complex;0.0476702809009355!GO:0008610;lipid biosynthetic process;0.0477775302771483!GO:0007004;telomere maintenance via telomerase;0.0482079559692204!GO:0006672;ceramide metabolic process;0.04860721242214!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0487031143933964!GO:0046112;nucleobase biosynthetic process;0.0487752330720054!GO:0043154;negative regulation of caspase activity;0.0488474664071101!GO:0030659;cytoplasmic vesicle membrane;0.0493880021359218!GO:0051128;regulation of cellular component organization and biogenesis;0.0495087798582193!GO:0030522;intracellular receptor-mediated signaling pathway;0.0496712308284018 | |||
|sample_id=10426 | |sample_id=10426 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=vulva | |sample_tissue=vulva | ||
|top_motifs=SNAI1..3:1.85527433538;ZEB1:1.74254348003;TBX4,5:1.69212043202;VSX1,2:1.5418234101;TFDP1:1.41410643605;TP53:1.39041472974;ZNF148:1.36352010666;NKX2-3_NKX2-5:1.28396798883;RBPJ:1.2670376809;SP1:1.1638753479;PITX1..3:1.15220608505;IRF7:1.14037271817;NKX2-1,4:1.1130303964;E2F1..5:1.08138405598;POU2F1..3:0.989697279776;ADNP_IRX_SIX_ZHX:0.96694214988;GLI1..3:0.925620185079;FOXN1:0.841328594167;XCPE1{core}:0.838050289909;MYOD1:0.825258239863;POU1F1:0.813692444508;FOS_FOS{B,L1}_JUN{B,D}:0.741329530698;CEBPA,B_DDIT3:0.692430441168;TFCP2:0.672781868457;TBP:0.646273104715;NFY{A,B,C}:0.634867332438;FOXQ1:0.622121387118;FOX{I1,J2}:0.620629622563;ONECUT1,2:0.559410496516;TEAD1:0.555484285;NFE2:0.543305103323;NFIL3:0.520030230519;HSF1,2:0.51317997753;FOX{F1,F2,J1}:0.506985184652;TFAP2{A,C}:0.481351798695;BACH2:0.462411802165;POU5F1:0.408607145104;OCT4_SOX2{dimer}:0.408260491508;IKZF1:0.402554221137;ELK1,4_GABP{A,B1}:0.385708531684;FOSL2:0.371758984305;FOXA2:0.367838335865;FOXP1:0.36403996072;bHLH_family:0.349526736904;PPARG:0.348349944277;HOX{A5,B5}:0.326706261257;POU6F1:0.312854430885;MAZ:0.307960106543;STAT5{A,B}:0.304844055773;CDC5L:0.303200783591;ZNF143:0.302860721686;HOX{A6,A7,B6,B7}:0.289507312226;SOX17:0.279206584993;TLX2:0.273703583852;NANOG:0.253611550229;PAX8:0.24337422701;FOXL1:0.239981666081;NR6A1:0.229662716543;MED-1{core}:0.227060301415;ATF5_CREB3:0.216440026952;MYB:0.209823578848;HAND1,2:0.189344173148;HIF1A:0.183457901705;ARID5B:0.183073287362;NKX6-1,2:0.149576064738;NR5A1,2:0.145667247169;ZNF423:0.115012945136;EN1,2:0.108168428602;PAX2:0.090743608584;PAX1,9:0.0866342594881;IRF1,2:0.0676918144675;NFKB1_REL_RELA:0.0613917332169;CRX:0.0550505698076;RFX2..5_RFXANK_RFXAP:0.0505375898033;FOX{D1,D2}:0.0478534660634;PDX1:0.0417954239831;HLF:0.0292829530956;NRF1:0.0276566272016;RFX1:0.0271254203194;TLX1..3_NFIC{dimer}:0.017906806445;YY1:0.00136843578372;PBX1:-0.00762038446172;T:-0.0157101894292;GFI1B:-0.0285011409774;TFAP2B:-0.0307600387294;ELF1,2,4:-0.0365622721678;POU3F1..4:-0.0379332688208;GFI1:-0.0607230102808;HOXA9_MEIS1:-0.0623559886993;HNF4A_NR2F1,2:-0.0808005015115;MTF1:-0.0984532183735;BREu{core}:-0.100061169763;HOX{A4,D4}:-0.100865118726;PAX4:-0.108868024801;SRF:-0.109141259238;MTE{core}:-0.110265546741;AR:-0.114424230856;PAX3,7:-0.119452343605;FOXM1:-0.128664934396;SOX2:-0.138112722046;RREB1:-0.138585060395;EGR1..3:-0.139337150356;ATF4:-0.140156800345;SOX{8,9,10}:-0.14449362172;TOPORS:-0.150154091417;ATF2:-0.153724647156;NFIX:-0.161397776167;FOXO1,3,4:-0.191390515142;STAT2,4,6:-0.193404862021;LMO2:-0.21350502922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215557366323;GATA6:-0.226682495152;HNF1A:-0.2392222906;HBP1_HMGB_SSRP1_UBTF:-0.241138807469;EBF1:-0.254857067544;ZBTB6:-0.262422975517;TEF:-0.271016477073;JUN:-0.274354994513;MEF2{A,B,C,D}:-0.275807693751;NKX2-2,8:-0.276826662245;LEF1_TCF7_TCF7L1,2:-0.280900274867;GTF2A1,2:-0.289605925114;GTF2I:-0.294157280165;BPTF:-0.295196622101;ZNF384:-0.297425182796;PAX6:-0.324415415162;NFE2L2:-0.334119887165;NKX3-2:-0.357580610505;ZFP161:-0.35795699032;ALX4:-0.364503597545;AHR_ARNT_ARNT2:-0.368520519573;DBP:-0.369400791635;SPIB:-0.37431783061;HIC1:-0.374449967135;CUX2:-0.432760023942;MYBL2:-0.445342262707;SPI1:-0.448040892295;EP300:-0.448928062556;KLF4:-0.456541529892;DMAP1_NCOR{1,2}_SMARC:-0.458271256712;FOXD3:-0.459961113575;CREB1:-0.462613973419;HES1:-0.4682983199;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.473172552406;ETS1,2:-0.491229310075;GZF1:-0.494078909084;ZIC1..3:-0.524600700457;LHX3,4:-0.547695142977;PRRX1,2:-0.554980923643;SOX5:-0.566761222987;MAFB:-0.576802939544;ESRRA:-0.592241778141;CDX1,2,4:-0.6015929;RUNX1..3:-0.618129575305;SMAD1..7,9:-0.642385473127;NKX3-1:-0.659649164236;ZBTB16:-0.660166917021;PRDM1:-0.672699679838;UFEwm:-0.684483465822;NR3C1:-0.706399759054;AIRE:-0.75466182762;NHLH1,2:-0.76947065259;PATZ1:-0.775304339014;FOXP3:-0.787788669285;ZNF238:-0.788479193163;GATA4:-0.789945032388;HMGA1,2:-0.816425237179;RORA:-0.841485739428;REST:-0.841966461012;TAL1_TCF{3,4,12}:-0.863495269237;EVI1:-0.867170482893;SREBF1,2:-0.874704652322;GCM1,2:-0.892939481628;MZF1:-0.893821162241;MYFfamily:-0.903218034422;NR1H4:-0.926552165473;ESR1:-0.94294693694;PAX5:-0.945944937453;TGIF1:-0.956779472654;XBP1:-0.982738338379;ATF6:-0.989980919965;IKZF2:-1.01766893072;NFATC1..3:-1.05009605359;SPZ1:-1.10747780386;TFAP4:-1.11485045485;ALX1:-1.1389617956;RXR{A,B,G}:-1.22198802286;RXRA_VDR{dimer}:-1.26263588443;STAT1,3:-1.30576657873;NANOG{mouse}:-1.35913719189;NFE2L1:-1.38922448718;HMX1:-1.71332960494 | |top_motifs=SNAI1..3:1.85527433538;ZEB1:1.74254348003;TBX4,5:1.69212043202;VSX1,2:1.5418234101;TFDP1:1.41410643605;TP53:1.39041472974;ZNF148:1.36352010666;NKX2-3_NKX2-5:1.28396798883;RBPJ:1.2670376809;SP1:1.1638753479;PITX1..3:1.15220608505;IRF7:1.14037271817;NKX2-1,4:1.1130303964;E2F1..5:1.08138405598;POU2F1..3:0.989697279776;ADNP_IRX_SIX_ZHX:0.96694214988;GLI1..3:0.925620185079;FOXN1:0.841328594167;XCPE1{core}:0.838050289909;MYOD1:0.825258239863;POU1F1:0.813692444508;FOS_FOS{B,L1}_JUN{B,D}:0.741329530698;CEBPA,B_DDIT3:0.692430441168;TFCP2:0.672781868457;TBP:0.646273104715;NFY{A,B,C}:0.634867332438;FOXQ1:0.622121387118;FOX{I1,J2}:0.620629622563;ONECUT1,2:0.559410496516;TEAD1:0.555484285;NFE2:0.543305103323;NFIL3:0.520030230519;HSF1,2:0.51317997753;FOX{F1,F2,J1}:0.506985184652;TFAP2{A,C}:0.481351798695;BACH2:0.462411802165;POU5F1:0.408607145104;OCT4_SOX2{dimer}:0.408260491508;IKZF1:0.402554221137;ELK1,4_GABP{A,B1}:0.385708531684;FOSL2:0.371758984305;FOXA2:0.367838335865;FOXP1:0.36403996072;bHLH_family:0.349526736904;PPARG:0.348349944277;HOX{A5,B5}:0.326706261257;POU6F1:0.312854430885;MAZ:0.307960106543;STAT5{A,B}:0.304844055773;CDC5L:0.303200783591;ZNF143:0.302860721686;HOX{A6,A7,B6,B7}:0.289507312226;SOX17:0.279206584993;TLX2:0.273703583852;NANOG:0.253611550229;PAX8:0.24337422701;FOXL1:0.239981666081;NR6A1:0.229662716543;MED-1{core}:0.227060301415;ATF5_CREB3:0.216440026952;MYB:0.209823578848;HAND1,2:0.189344173148;HIF1A:0.183457901705;ARID5B:0.183073287362;NKX6-1,2:0.149576064738;NR5A1,2:0.145667247169;ZNF423:0.115012945136;EN1,2:0.108168428602;PAX2:0.090743608584;PAX1,9:0.0866342594881;IRF1,2:0.0676918144675;NFKB1_REL_RELA:0.0613917332169;CRX:0.0550505698076;RFX2..5_RFXANK_RFXAP:0.0505375898033;FOX{D1,D2}:0.0478534660634;PDX1:0.0417954239831;HLF:0.0292829530956;NRF1:0.0276566272016;RFX1:0.0271254203194;TLX1..3_NFIC{dimer}:0.017906806445;YY1:0.00136843578372;PBX1:-0.00762038446172;T:-0.0157101894292;GFI1B:-0.0285011409774;TFAP2B:-0.0307600387294;ELF1,2,4:-0.0365622721678;POU3F1..4:-0.0379332688208;GFI1:-0.0607230102808;HOXA9_MEIS1:-0.0623559886993;HNF4A_NR2F1,2:-0.0808005015115;MTF1:-0.0984532183735;BREu{core}:-0.100061169763;HOX{A4,D4}:-0.100865118726;PAX4:-0.108868024801;SRF:-0.109141259238;MTE{core}:-0.110265546741;AR:-0.114424230856;PAX3,7:-0.119452343605;FOXM1:-0.128664934396;SOX2:-0.138112722046;RREB1:-0.138585060395;EGR1..3:-0.139337150356;ATF4:-0.140156800345;SOX{8,9,10}:-0.14449362172;TOPORS:-0.150154091417;ATF2:-0.153724647156;NFIX:-0.161397776167;FOXO1,3,4:-0.191390515142;STAT2,4,6:-0.193404862021;LMO2:-0.21350502922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215557366323;GATA6:-0.226682495152;HNF1A:-0.2392222906;HBP1_HMGB_SSRP1_UBTF:-0.241138807469;EBF1:-0.254857067544;ZBTB6:-0.262422975517;TEF:-0.271016477073;JUN:-0.274354994513;MEF2{A,B,C,D}:-0.275807693751;NKX2-2,8:-0.276826662245;LEF1_TCF7_TCF7L1,2:-0.280900274867;GTF2A1,2:-0.289605925114;GTF2I:-0.294157280165;BPTF:-0.295196622101;ZNF384:-0.297425182796;PAX6:-0.324415415162;NFE2L2:-0.334119887165;NKX3-2:-0.357580610505;ZFP161:-0.35795699032;ALX4:-0.364503597545;AHR_ARNT_ARNT2:-0.368520519573;DBP:-0.369400791635;SPIB:-0.37431783061;HIC1:-0.374449967135;CUX2:-0.432760023942;MYBL2:-0.445342262707;SPI1:-0.448040892295;EP300:-0.448928062556;KLF4:-0.456541529892;DMAP1_NCOR{1,2}_SMARC:-0.458271256712;FOXD3:-0.459961113575;CREB1:-0.462613973419;HES1:-0.4682983199;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.473172552406;ETS1,2:-0.491229310075;GZF1:-0.494078909084;ZIC1..3:-0.524600700457;LHX3,4:-0.547695142977;PRRX1,2:-0.554980923643;SOX5:-0.566761222987;MAFB:-0.576802939544;ESRRA:-0.592241778141;CDX1,2,4:-0.6015929;RUNX1..3:-0.618129575305;SMAD1..7,9:-0.642385473127;NKX3-1:-0.659649164236;ZBTB16:-0.660166917021;PRDM1:-0.672699679838;UFEwm:-0.684483465822;NR3C1:-0.706399759054;AIRE:-0.75466182762;NHLH1,2:-0.76947065259;PATZ1:-0.775304339014;FOXP3:-0.787788669285;ZNF238:-0.788479193163;GATA4:-0.789945032388;HMGA1,2:-0.816425237179;RORA:-0.841485739428;REST:-0.841966461012;TAL1_TCF{3,4,12}:-0.863495269237;EVI1:-0.867170482893;SREBF1,2:-0.874704652322;GCM1,2:-0.892939481628;MZF1:-0.893821162241;MYFfamily:-0.903218034422;NR1H4:-0.926552165473;ESR1:-0.94294693694;PAX5:-0.945944937453;TGIF1:-0.956779472654;XBP1:-0.982738338379;ATF6:-0.989980919965;IKZF2:-1.01766893072;NFATC1..3:-1.05009605359;SPZ1:-1.10747780386;TFAP4:-1.11485045485;ALX1:-1.1389617956;RXR{A,B,G}:-1.22198802286;RXRA_VDR{dimer}:-1.26263588443;STAT1,3:-1.30576657873;NANOG{mouse}:-1.35913719189;NFE2L1:-1.38922448718;HMX1:-1.71332960494 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10426-106D3;search_select_hide=table117:FF:10426-106D3 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | epidermoid carcinoma cell line:A431 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10743 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10743
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10743
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.922 |
| 10 | 10 | 0.551 |
| 100 | 100 | 0.665 |
| 101 | 101 | 0.446 |
| 102 | 102 | 0.397 |
| 103 | 103 | 0.423 |
| 104 | 104 | 0.607 |
| 105 | 105 | 0.23 |
| 106 | 106 | 0.891 |
| 107 | 107 | 0.422 |
| 108 | 108 | 0.898 |
| 109 | 109 | 0.00855 |
| 11 | 11 | 0.305 |
| 110 | 110 | 0.645 |
| 111 | 111 | 0.574 |
| 112 | 112 | 0.482 |
| 113 | 113 | 0.197 |
| 114 | 114 | 0.207 |
| 115 | 115 | 0.846 |
| 116 | 116 | 0.0476 |
| 117 | 117 | 0.456 |
| 118 | 118 | 0.72 |
| 119 | 119 | 0.309 |
| 12 | 12 | 0.807 |
| 120 | 120 | 0.995 |
| 121 | 121 | 0.399 |
| 122 | 122 | 0.188 |
| 123 | 123 | 0.782 |
| 124 | 124 | 0.0764 |
| 125 | 125 | 0.34 |
| 126 | 126 | 0.996 |
| 127 | 127 | 0.68 |
| 128 | 128 | 0.288 |
| 129 | 129 | 0.643 |
| 13 | 13 | 0.00429 |
| 130 | 130 | 0.467 |
| 131 | 131 | 0.588 |
| 132 | 132 | 0.935 |
| 133 | 133 | 0.0101 |
| 134 | 134 | 0.28 |
| 135 | 135 | 0.0104 |
| 136 | 136 | 0.0237 |
| 137 | 137 | 0.127 |
| 138 | 138 | 0.878 |
| 139 | 139 | 0.00253 |
| 14 | 14 | 0.771 |
| 140 | 140 | 0.0569 |
| 141 | 141 | 0.912 |
| 142 | 142 | 0.487 |
| 143 | 143 | 0.0117 |
| 144 | 144 | 0.133 |
| 145 | 145 | 0.863 |
| 146 | 146 | 0.566 |
| 147 | 147 | 0.674 |
| 148 | 148 | 0.258 |
| 149 | 149 | 0.045 |
| 15 | 15 | 0.373 |
| 150 | 150 | 0.251 |
| 151 | 151 | 0.888 |
| 152 | 152 | 0.116 |
| 153 | 153 | 0.873 |
| 154 | 154 | 0.605 |
| 155 | 155 | 0.732 |
| 156 | 156 | 0.802 |
| 157 | 157 | 0.853 |
| 158 | 158 | 0.494 |
| 159 | 159 | 0.836 |
| 16 | 16 | 0.807 |
| 160 | 160 | 0.631 |
| 161 | 161 | 0.95 |
| 162 | 162 | 0.613 |
| 163 | 163 | 0.796 |
| 164 | 164 | 0.997 |
| 165 | 165 | 0.941 |
| 166 | 166 | 0.374 |
| 167 | 167 | 0.572 |
| 168 | 168 | 0.498 |
| 169 | 169 | 0.222 |
| 17 | 17 | 0.372 |
| 18 | 18 | 0.295 |
| 19 | 19 | 0.0665 |
| 2 | 2 | 0.979 |
| 20 | 20 | 0.189 |
| 21 | 21 | 0.82 |
| 22 | 22 | 0.75 |
| 23 | 23 | 0.538 |
| 24 | 24 | 0.117 |
| 25 | 25 | 0.773 |
| 26 | 26 | 0.673 |
| 27 | 27 | 0.415 |
| 28 | 28 | 0.289 |
| 29 | 29 | 0.587 |
| 3 | 3 | 0.789 |
| 30 | 30 | 0.207 |
| 31 | 31 | 0.16 |
| 32 | 32 | 0.00151 |
| 33 | 33 | 0.227 |
| 34 | 34 | 0.58 |
| 35 | 35 | 0.00265 |
| 36 | 36 | 0.984 |
| 37 | 37 | 0.514 |
| 38 | 38 | 0.662 |
| 39 | 39 | 0.694 |
| 4 | 4 | 0.777 |
| 40 | 40 | 0.185 |
| 41 | 41 | 0.131 |
| 42 | 42 | 0.592 |
| 43 | 43 | 0.262 |
| 44 | 44 | 0.652 |
| 45 | 45 | 0.324 |
| 46 | 46 | 0.501 |
| 47 | 47 | 0.689 |
| 48 | 48 | 0.822 |
| 49 | 49 | 0.109 |
| 5 | 5 | 0.349 |
| 50 | 50 | 0.161 |
| 51 | 51 | 0.816 |
| 52 | 52 | 0.305 |
| 53 | 53 | 0.809 |
| 54 | 54 | 0.905 |
| 55 | 55 | 0.852 |
| 56 | 56 | 0.864 |
| 57 | 57 | 0.715 |
| 58 | 58 | 0.881 |
| 59 | 59 | 0.748 |
| 6 | 6 | 0.312 |
| 60 | 60 | 0.352 |
| 61 | 61 | 0.597 |
| 62 | 62 | 0.408 |
| 63 | 63 | 0.589 |
| 64 | 64 | 0.968 |
| 65 | 65 | 0.333 |
| 66 | 66 | 0.0574 |
| 67 | 67 | 0.713 |
| 68 | 68 | 0.0401 |
| 69 | 69 | 0.597 |
| 7 | 7 | 0.487 |
| 70 | 70 | 0.571 |
| 71 | 71 | 0.558 |
| 72 | 72 | 0.986 |
| 73 | 73 | 0.161 |
| 74 | 74 | 0.00309 |
| 75 | 75 | 0.325 |
| 76 | 76 | 0.814 |
| 77 | 77 | 0.826 |
| 78 | 78 | 0.103 |
| 79 | 79 | 1.43895e-4 |
| 8 | 8 | 0.468 |
| 80 | 80 | 0.167 |
| 81 | 81 | 0.0249 |
| 82 | 82 | 0.00232 |
| 83 | 83 | 0.887 |
| 84 | 84 | 0.962 |
| 85 | 85 | 0.0607 |
| 86 | 86 | 0.432 |
| 87 | 87 | 0.025 |
| 88 | 88 | 0.841 |
| 89 | 89 | 0.564 |
| 9 | 9 | 0.353 |
| 90 | 90 | 0.0478 |
| 91 | 91 | 0.0307 |
| 92 | 92 | 0.113 |
| 93 | 93 | 0.663 |
| 94 | 94 | 0.0433 |
| 95 | 95 | 0.106 |
| 96 | 96 | 0.114 |
| 97 | 97 | 0.655 |
| 98 | 98 | 0.144 |
| 99 | 99 | 0.345 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10743
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100017 A-431 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000997 (mammalian vulva)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0005056 (external female genitalia)
0010317 (germ layer / neural crest derived structure)
0004176 (external genitalia)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100017 (A-431 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
