FF:11380-118B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005628 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008279;DRR009151;DRZ000576;DRZ001961;DRZ011926;DRZ013311 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:3128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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:3128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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11380-118B3 | |id=FF:11380-118B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs11996 | |||
|library_id_phase_based=2:CNhs11996 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11380 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11380 | |||
|name=Fibroblast - Periodontal Ligament, donor6 (PLH3) | |name=Fibroblast - Periodontal Ligament, donor6 (PLH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11996,LSID837,release011,COMPLETED | |profile_hcage=CNhs11996,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=18.9838 | |rna_weight_ug=18.9838 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.93457273633327e-214!GO:0005737;cytoplasm;5.4436177661655e-179!GO:0043226;organelle;7.91587905511382e-151!GO:0043229;intracellular organelle;2.30803361141321e-150!GO:0043231;intracellular membrane-bound organelle;5.99681661217249e-150!GO:0043227;membrane-bound organelle;6.74901990076507e-150!GO:0044444;cytoplasmic part;7.5136626676802e-126!GO:0044422;organelle part;1.12475278889561e-107!GO:0044446;intracellular organelle part;4.13413304241633e-106!GO:0005515;protein binding;4.50531599264967e-84!GO:0044238;primary metabolic process;1.78950430186752e-72!GO:0032991;macromolecular complex;3.57890188469101e-72!GO:0044237;cellular metabolic process;5.4089928886738e-71!GO:0043170;macromolecule metabolic process;1.76661164366202e-66!GO:0030529;ribonucleoprotein complex;1.7371003620832e-61!GO:0043233;organelle lumen;1.07520917547508e-52!GO:0031974;membrane-enclosed lumen;1.07520917547508e-52!GO:0005739;mitochondrion;1.40210430552346e-51!GO:0019538;protein metabolic process;5.21136214509209e-51!GO:0003723;RNA binding;2.25616938438863e-50!GO:0005634;nucleus;4.76141671401205e-50!GO:0044428;nuclear part;8.14714698761526e-49!GO:0031090;organelle membrane;2.54475781372922e-47!GO:0016043;cellular component organization and biogenesis;3.79599802096043e-47!GO:0044260;cellular macromolecule metabolic process;6.983010426189e-46!GO:0044267;cellular protein metabolic process;7.0091789458645e-45!GO:0015031;protein transport;6.72136092769975e-41!GO:0033036;macromolecule localization;1.27541219692347e-40!GO:0005840;ribosome;8.49423728707269e-40!GO:0008104;protein localization;2.50031850915583e-38!GO:0006412;translation;2.8706563742194e-38!GO:0045184;establishment of protein localization;3.12671759257678e-38!GO:0043234;protein complex;1.94564228012961e-37!GO:0005829;cytosol;1.53797731967999e-35!GO:0003735;structural constituent of ribosome;6.60976348159345e-35!GO:0009058;biosynthetic process;1.71323461489299e-34!GO:0044429;mitochondrial part;3.81396189261665e-34!GO:0009059;macromolecule biosynthetic process;4.32901741624839e-33!GO:0043283;biopolymer metabolic process;9.72870089405315e-33!GO:0033279;ribosomal subunit;2.6135883172605e-32!GO:0046907;intracellular transport;2.87959943693474e-32!GO:0031967;organelle envelope;1.15518212443456e-31!GO:0031975;envelope;1.8758815497094e-31!GO:0044249;cellular biosynthetic process;2.87661676809342e-31!GO:0031981;nuclear lumen;1.81550282838216e-29!GO:0006396;RNA processing;1.56493563325605e-28!GO:0006886;intracellular protein transport;3.3008209811796e-27!GO:0010467;gene expression;3.44290348632279e-27!GO:0065003;macromolecular complex assembly;3.38358711427634e-26!GO:0016071;mRNA metabolic process;2.88944987330411e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.87047401793324e-25!GO:0022607;cellular component assembly;7.09523007119376e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.76857003725788e-24!GO:0006996;organelle organization and biogenesis;1.10648216898029e-23!GO:0008380;RNA splicing;3.35074617624773e-23!GO:0005740;mitochondrial envelope;8.24502255889176e-23!GO:0005783;endoplasmic reticulum;3.01328389461009e-22!GO:0031966;mitochondrial membrane;1.15816793614262e-21!GO:0051649;establishment of cellular localization;4.2360511496041e-21!GO:0051641;cellular localization;4.64721493553647e-21!GO:0019866;organelle inner membrane;6.79885620402968e-21!GO:0012505;endomembrane system;1.05396035375031e-20!GO:0005794;Golgi apparatus;1.49790379934585e-20!GO:0006397;mRNA processing;1.7721939278979e-20!GO:0043228;non-membrane-bound organelle;2.3342407467203e-20!GO:0043232;intracellular non-membrane-bound organelle;2.3342407467203e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.07308942280912e-20!GO:0005743;mitochondrial inner membrane;1.96175063953684e-19!GO:0048770;pigment granule;1.96175063953684e-19!GO:0042470;melanosome;1.96175063953684e-19!GO:0006119;oxidative phosphorylation;2.79512260359419e-19!GO:0044445;cytosolic part;5.69453866721441e-19!GO:0006457;protein folding;1.74782757316665e-18!GO:0005654;nucleoplasm;2.46366641410747e-18!GO:0016462;pyrophosphatase activity;9.32489833271232e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10427511481626e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.75855511794718e-17!GO:0000166;nucleotide binding;3.03707764865721e-17!GO:0017111;nucleoside-triphosphatase activity;3.32900516624481e-17!GO:0008134;transcription factor binding;3.42838028456197e-17!GO:0015934;large ribosomal subunit;7.1525913943406e-17!GO:0044432;endoplasmic reticulum part;1.06173081732562e-16!GO:0044455;mitochondrial membrane part;1.59254892485139e-16!GO:0015935;small ribosomal subunit;1.95602754684436e-16!GO:0006512;ubiquitin cycle;2.57183669739931e-16!GO:0005681;spliceosome;2.5781052648729e-16!GO:0043285;biopolymer catabolic process;6.37992068970997e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.72907393940255e-16!GO:0019941;modification-dependent protein catabolic process;1.38791979587212e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.38791979587212e-15!GO:0030163;protein catabolic process;1.4160650558748e-15!GO:0044257;cellular protein catabolic process;2.1268201572419e-15!GO:0044451;nucleoplasm part;2.1268201572419e-15!GO:0016874;ligase activity;2.94532687543601e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.40249942567113e-15!GO:0044265;cellular macromolecule catabolic process;5.17423512608909e-15!GO:0022618;protein-RNA complex assembly;1.0748168365092e-14!GO:0007049;cell cycle;1.61865069375457e-14!GO:0012501;programmed cell death;1.84944111375485e-14!GO:0005746;mitochondrial respiratory chain;1.85504610236745e-14!GO:0006259;DNA metabolic process;2.47463318105082e-14!GO:0009057;macromolecule catabolic process;3.24859285594664e-14!GO:0006605;protein targeting;5.83052021069053e-14!GO:0043412;biopolymer modification;6.19408511889167e-14!GO:0006915;apoptosis;6.69967280476873e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.76983484529037e-14!GO:0031980;mitochondrial lumen;8.04167448964424e-14!GO:0005759;mitochondrial matrix;8.04167448964424e-14!GO:0016192;vesicle-mediated transport;8.55433183689189e-14!GO:0000502;proteasome complex (sensu Eukaryota);8.57349742777505e-14!GO:0048193;Golgi vesicle transport;1.4635746584072e-13!GO:0051082;unfolded protein binding;1.84917321083409e-13!GO:0008219;cell death;2.81385380789683e-13!GO:0016265;death;2.81385380789683e-13!GO:0032553;ribonucleotide binding;3.6967521152605e-13!GO:0032555;purine ribonucleotide binding;3.6967521152605e-13!GO:0048523;negative regulation of cellular process;3.84091944978906e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.02067642752909e-13!GO:0003954;NADH dehydrogenase activity;4.02067642752909e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.02067642752909e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.28672628826615e-13!GO:0006464;protein modification process;4.697044930713e-13!GO:0051186;cofactor metabolic process;8.89788319289922e-13!GO:0017076;purine nucleotide binding;8.91562391030043e-13!GO:0008135;translation factor activity, nucleic acid binding;9.22877233891292e-13!GO:0044248;cellular catabolic process;1.52825817579857e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.56102870279875e-12!GO:0003676;nucleic acid binding;4.21164870477555e-12!GO:0005730;nucleolus;5.70499510664351e-12!GO:0005793;ER-Golgi intermediate compartment;5.82855688584569e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.00341022337413e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.07627042813471e-11!GO:0048519;negative regulation of biological process;2.94486565525617e-11!GO:0003712;transcription cofactor activity;3.28842767771453e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.40425318746826e-11!GO:0045271;respiratory chain complex I;3.40425318746826e-11!GO:0005747;mitochondrial respiratory chain complex I;3.40425318746826e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.14177949078043e-11!GO:0042773;ATP synthesis coupled electron transport;4.14177949078043e-11!GO:0005789;endoplasmic reticulum membrane;4.89086621654515e-11!GO:0043687;post-translational protein modification;5.8679554568748e-11!GO:0005761;mitochondrial ribosome;7.38571650421657e-11!GO:0000313;organellar ribosome;7.38571650421657e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05221559440169e-10!GO:0008639;small protein conjugating enzyme activity;1.55791443101858e-10!GO:0022402;cell cycle process;1.77879065429704e-10!GO:0004842;ubiquitin-protein ligase activity;3.41690265530142e-10!GO:0016070;RNA metabolic process;3.68474624959111e-10!GO:0003924;GTPase activity;3.77606014104535e-10!GO:0003743;translation initiation factor activity;3.81260781591251e-10!GO:0006732;coenzyme metabolic process;4.28779162525416e-10!GO:0019787;small conjugating protein ligase activity;4.67040747204182e-10!GO:0006913;nucleocytoplasmic transport;5.23271612714607e-10!GO:0050794;regulation of cellular process;6.91444564305566e-10!GO:0051169;nuclear transport;9.64394654433598e-10!GO:0009055;electron carrier activity;9.83685512619166e-10!GO:0005635;nuclear envelope;1.00140995019408e-09!GO:0005524;ATP binding;1.13014710485722e-09!GO:0006413;translational initiation;1.53017543960844e-09!GO:0032559;adenyl ribonucleotide binding;1.74254170133935e-09!GO:0005768;endosome;2.14336699553529e-09!GO:0043067;regulation of programmed cell death;2.95686053030045e-09!GO:0042981;regulation of apoptosis;3.02414312836281e-09!GO:0006366;transcription from RNA polymerase II promoter;3.40069404103451e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.57137038025264e-09!GO:0006446;regulation of translational initiation;5.04784919702463e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.04807029957534e-09!GO:0030554;adenyl nucleotide binding;5.18168662415732e-09!GO:0044431;Golgi apparatus part;5.49223320674418e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;5.64116454966071e-09!GO:0000375;RNA splicing, via transesterification reactions;5.64116454966071e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.64116454966071e-09!GO:0031965;nuclear membrane;6.03130403264439e-09!GO:0016881;acid-amino acid ligase activity;9.32388153967835e-09!GO:0005788;endoplasmic reticulum lumen;1.0628647214582e-08!GO:0051726;regulation of cell cycle;1.2555828208034e-08!GO:0008565;protein transporter activity;1.3143333301594e-08!GO:0006461;protein complex assembly;1.74730019220273e-08!GO:0017038;protein import;1.8300895856672e-08!GO:0008361;regulation of cell size;1.9347620990492e-08!GO:0000074;regulation of progression through cell cycle;2.21747491263077e-08!GO:0016049;cell growth;2.46477710931551e-08!GO:0009259;ribonucleotide metabolic process;2.84965391156766e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.98529808891406e-08!GO:0009150;purine ribonucleotide metabolic process;3.52984227076117e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.86247416488755e-08!GO:0006163;purine nucleotide metabolic process;4.17219890150746e-08!GO:0009056;catabolic process;4.49671367251076e-08!GO:0000278;mitotic cell cycle;4.50325438657981e-08!GO:0051246;regulation of protein metabolic process;7.30949864967639e-08!GO:0030120;vesicle coat;8.4542569804576e-08!GO:0030662;coated vesicle membrane;8.4542569804576e-08!GO:0019829;cation-transporting ATPase activity;8.5518185656331e-08!GO:0043069;negative regulation of programmed cell death;1.00260937077894e-07!GO:0048522;positive regulation of cellular process;1.08601870764927e-07!GO:0009141;nucleoside triphosphate metabolic process;1.09354693705492e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.09926741167024e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.20139749355546e-07!GO:0005773;vacuole;1.21112764318496e-07!GO:0015986;ATP synthesis coupled proton transport;1.30108483702483e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.30108483702483e-07!GO:0001558;regulation of cell growth;1.30641985956194e-07!GO:0006974;response to DNA damage stimulus;1.38972731399423e-07!GO:0006164;purine nucleotide biosynthetic process;1.4623112423692e-07!GO:0016604;nuclear body;1.50008494889416e-07!GO:0050789;regulation of biological process;1.50552566180575e-07!GO:0006916;anti-apoptosis;1.51194303978293e-07!GO:0043066;negative regulation of apoptosis;1.5185606033426e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.63920359213412e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.94319574557117e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.94319574557117e-07!GO:0044453;nuclear membrane part;2.03936286322714e-07!GO:0042623;ATPase activity, coupled;2.05274370361205e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.07618547845343e-07!GO:0009260;ribonucleotide biosynthetic process;2.37516253186391e-07!GO:0016887;ATPase activity;2.74167126675155e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.92077379370592e-07!GO:0031324;negative regulation of cellular metabolic process;3.13658555441011e-07!GO:0048475;coated membrane;3.47065108881462e-07!GO:0030117;membrane coat;3.47065108881462e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.51040624465197e-07!GO:0016564;transcription repressor activity;3.72529133522637e-07!GO:0046034;ATP metabolic process;4.52405526059294e-07!GO:0031988;membrane-bound vesicle;4.53455916727003e-07!GO:0009117;nucleotide metabolic process;4.8859277320315e-07!GO:0003714;transcription corepressor activity;5.12577158722893e-07!GO:0051276;chromosome organization and biogenesis;5.13735148460943e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.17370064071281e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.17370064071281e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.74487276248939e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.51078417323758e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.77678423709194e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.59818300587572e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.59818300587572e-07!GO:0009060;aerobic respiration;1.02209811689667e-06!GO:0000323;lytic vacuole;1.04357639446488e-06!GO:0005764;lysosome;1.04357639446488e-06!GO:0042254;ribosome biogenesis and assembly;1.05200330817897e-06!GO:0045333;cellular respiration;1.09158921917234e-06!GO:0045786;negative regulation of progression through cell cycle;1.1320050844025e-06!GO:0051188;cofactor biosynthetic process;1.23679587961547e-06!GO:0031982;vesicle;1.25395568802691e-06!GO:0000139;Golgi membrane;1.28062221519317e-06!GO:0031252;leading edge;1.31509190228687e-06!GO:0006323;DNA packaging;1.31990091808716e-06!GO:0016491;oxidoreductase activity;1.77715556593277e-06!GO:0006754;ATP biosynthetic process;1.85813996086688e-06!GO:0006753;nucleoside phosphate metabolic process;1.85813996086688e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.88519484528298e-06!GO:0031410;cytoplasmic vesicle;2.08318242552333e-06!GO:0051789;response to protein stimulus;2.10513441293035e-06!GO:0006986;response to unfolded protein;2.10513441293035e-06!GO:0051170;nuclear import;2.16787478843941e-06!GO:0006793;phosphorus metabolic process;2.25699781208773e-06!GO:0006796;phosphate metabolic process;2.25699781208773e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.3926648296646e-06!GO:0005798;Golgi-associated vesicle;2.61304658402133e-06!GO:0016787;hydrolase activity;2.76463865790684e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.78245315074053e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.78245315074053e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.78245315074053e-06!GO:0006606;protein import into nucleus;2.85025880714836e-06!GO:0005525;GTP binding;3.59368814832572e-06!GO:0000151;ubiquitin ligase complex;3.74073449679228e-06!GO:0009892;negative regulation of metabolic process;3.96007513917957e-06!GO:0044440;endosomal part;4.18840442565939e-06!GO:0010008;endosome membrane;4.18840442565939e-06!GO:0043038;amino acid activation;5.38782021539219e-06!GO:0006418;tRNA aminoacylation for protein translation;5.38782021539219e-06!GO:0043039;tRNA aminoacylation;5.38782021539219e-06!GO:0065004;protein-DNA complex assembly;5.47538710976068e-06!GO:0005770;late endosome;6.49391174802932e-06!GO:0005643;nuclear pore;6.87379891943456e-06!GO:0016607;nuclear speck;6.9975352954518e-06!GO:0048518;positive regulation of biological process;7.5337675991748e-06!GO:0006399;tRNA metabolic process;8.25616993211698e-06!GO:0009719;response to endogenous stimulus;8.74747531947644e-06!GO:0004386;helicase activity;8.9736530452616e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.03545658919812e-06!GO:0016567;protein ubiquitination;9.36743912860205e-06!GO:0032446;protein modification by small protein conjugation;9.57485683639035e-06!GO:0007005;mitochondrion organization and biogenesis;1.49409856850767e-05!GO:0045259;proton-transporting ATP synthase complex;1.53633813207784e-05!GO:0065002;intracellular protein transport across a membrane;1.57951004726354e-05!GO:0007243;protein kinase cascade;1.58790916609623e-05!GO:0030133;transport vesicle;1.63834024262293e-05!GO:0016310;phosphorylation;1.84266753376523e-05!GO:0005667;transcription factor complex;1.9354755849883e-05!GO:0004298;threonine endopeptidase activity;1.94871882756959e-05!GO:0006333;chromatin assembly or disassembly;2.08973378217159e-05!GO:0016481;negative regulation of transcription;2.11678548343114e-05!GO:0006281;DNA repair;2.12829131060658e-05!GO:0008026;ATP-dependent helicase activity;2.16480138579512e-05!GO:0006099;tricarboxylic acid cycle;2.29778011436395e-05!GO:0046356;acetyl-CoA catabolic process;2.29778011436395e-05!GO:0032561;guanyl ribonucleotide binding;2.30768913268754e-05!GO:0019001;guanyl nucleotide binding;2.30768913268754e-05!GO:0005694;chromosome;2.31030613516852e-05!GO:0005769;early endosome;2.31201413930015e-05!GO:0009108;coenzyme biosynthetic process;2.32557036264261e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.58652797489706e-05!GO:0051187;cofactor catabolic process;2.71977889876744e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.73876406883891e-05!GO:0040008;regulation of growth;2.76182878706531e-05!GO:0008654;phospholipid biosynthetic process;3.2220850066028e-05!GO:0003697;single-stranded DNA binding;3.54983829488423e-05!GO:0043566;structure-specific DNA binding;3.89342444368736e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.9091266999056e-05!GO:0006084;acetyl-CoA metabolic process;4.13323121869192e-05!GO:0009109;coenzyme catabolic process;4.39188640751465e-05!GO:0006613;cotranslational protein targeting to membrane;4.86401192650835e-05!GO:0045454;cell redox homeostasis;5.01791734336118e-05!GO:0000245;spliceosome assembly;5.27374115559593e-05!GO:0022403;cell cycle phase;6.01365056852532e-05!GO:0006752;group transfer coenzyme metabolic process;6.1198509547995e-05!GO:0046930;pore complex;6.20095642304096e-05!GO:0044427;chromosomal part;7.52729662250241e-05!GO:0048468;cell development;8.15928040312803e-05!GO:0016740;transferase activity;8.50895021089496e-05!GO:0000785;chromatin;8.54440585795978e-05!GO:0006260;DNA replication;8.64636185777835e-05!GO:0015630;microtubule cytoskeleton;8.89209462390057e-05!GO:0030029;actin filament-based process;9.32658123938203e-05!GO:0005762;mitochondrial large ribosomal subunit;9.38529960035819e-05!GO:0000315;organellar large ribosomal subunit;9.38529960035819e-05!GO:0003713;transcription coactivator activity;9.80244776041637e-05!GO:0065007;biological regulation;9.93853967676231e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101064120179624!GO:0043623;cellular protein complex assembly;0.000107734248544829!GO:0015980;energy derivation by oxidation of organic compounds;0.000111729222204106!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000119469910751994!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000124338897850335!GO:0051301;cell division;0.000138361129568007!GO:0005905;coated pit;0.000149279188046812!GO:0016563;transcription activator activity;0.000167871833527759!GO:0016568;chromatin modification;0.000169360817889257!GO:0005048;signal sequence binding;0.000200003097538561!GO:0019899;enzyme binding;0.000203762659004842!GO:0006403;RNA localization;0.000205500745569209!GO:0005791;rough endoplasmic reticulum;0.000211442923429326!GO:0033116;ER-Golgi intermediate compartment membrane;0.000215860489068715!GO:0044262;cellular carbohydrate metabolic process;0.000218769701384952!GO:0007010;cytoskeleton organization and biogenesis;0.000219802125228669!GO:0006334;nucleosome assembly;0.000221477687441817!GO:0006091;generation of precursor metabolites and energy;0.000221803383985398!GO:0050657;nucleic acid transport;0.000229023772509851!GO:0051236;establishment of RNA localization;0.000229023772509851!GO:0050658;RNA transport;0.000229023772509851!GO:0006364;rRNA processing;0.000269028232267488!GO:0051427;hormone receptor binding;0.000302508240790504!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000322128240548684!GO:0016859;cis-trans isomerase activity;0.000338943730582055!GO:0000087;M phase of mitotic cell cycle;0.000344493343123799!GO:0019843;rRNA binding;0.000353776076167583!GO:0019867;outer membrane;0.000358545854796291!GO:0007067;mitosis;0.000372188701749135!GO:0008250;oligosaccharyl transferase complex;0.000374288031862878!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000380311137925369!GO:0051329;interphase of mitotic cell cycle;0.000390337518900487!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000400624502100125!GO:0008092;cytoskeletal protein binding;0.000410457062362199!GO:0007264;small GTPase mediated signal transduction;0.000415303865923378!GO:0031497;chromatin assembly;0.000420291737750133!GO:0004576;oligosaccharyl transferase activity;0.000422761072538969!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000434387726521281!GO:0031968;organelle outer membrane;0.000455453222373604!GO:0016044;membrane organization and biogenesis;0.000463227765655241!GO:0005885;Arp2/3 protein complex;0.000477759628936297!GO:0016072;rRNA metabolic process;0.000504726546578981!GO:0005813;centrosome;0.000509833526339345!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000545947071200823!GO:0035257;nuclear hormone receptor binding;0.000573268552936258!GO:0005741;mitochondrial outer membrane;0.000674243656062405!GO:0016197;endosome transport;0.000783304671160058!GO:0030663;COPI coated vesicle membrane;0.000801868522375938!GO:0030126;COPI vesicle coat;0.000801868522375938!GO:0051325;interphase;0.000838509379177573!GO:0006612;protein targeting to membrane;0.000920452056072864!GO:0016853;isomerase activity;0.000955605518899812!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00110351586326197!GO:0043021;ribonucleoprotein binding;0.00113350465827245!GO:0030132;clathrin coat of coated pit;0.00116365157918214!GO:0016779;nucleotidyltransferase activity;0.00116441935331412!GO:0009967;positive regulation of signal transduction;0.00116838283050024!GO:0018196;peptidyl-asparagine modification;0.0011779596916516!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011779596916516!GO:0031072;heat shock protein binding;0.00119993634696508!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00121993076002935!GO:0003724;RNA helicase activity;0.00123752155434417!GO:0005815;microtubule organizing center;0.00126546139472004!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00127913899368211!GO:0048471;perinuclear region of cytoplasm;0.00134446786409533!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00139645707190078!GO:0015399;primary active transmembrane transporter activity;0.00139645707190078!GO:0009165;nucleotide biosynthetic process;0.00141611902202738!GO:0045892;negative regulation of transcription, DNA-dependent;0.00142294980013562!GO:0006891;intra-Golgi vesicle-mediated transport;0.00144552084918951!GO:0045941;positive regulation of transcription;0.00144552084918951!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00147254700901315!GO:0030137;COPI-coated vesicle;0.00148661014813651!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001489933215528!GO:0051920;peroxiredoxin activity;0.00150894209392357!GO:0046474;glycerophospholipid biosynthetic process;0.00155824407544239!GO:0007050;cell cycle arrest;0.00156679509154928!GO:0030027;lamellipodium;0.00159041188071878!GO:0007040;lysosome organization and biogenesis;0.00175289047235815!GO:0005520;insulin-like growth factor binding;0.00190633762695873!GO:0045893;positive regulation of transcription, DNA-dependent;0.00191434263927689!GO:0019222;regulation of metabolic process;0.00196534238425627!GO:0006950;response to stress;0.00203778138641748!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00215799709530045!GO:0007033;vacuole organization and biogenesis;0.00219533329956208!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00236138126605897!GO:0043488;regulation of mRNA stability;0.00236255536914466!GO:0043487;regulation of RNA stability;0.00236255536914466!GO:0004177;aminopeptidase activity;0.00237222140735076!GO:0048487;beta-tubulin binding;0.00238175299017889!GO:0007160;cell-matrix adhesion;0.00239883490756514!GO:0043065;positive regulation of apoptosis;0.00239883490756514!GO:0051252;regulation of RNA metabolic process;0.00241607632370397!GO:0051028;mRNA transport;0.00250769979191156!GO:0000314;organellar small ribosomal subunit;0.00254674481141977!GO:0005763;mitochondrial small ribosomal subunit;0.00254674481141977!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00274604469335884!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00274604469335884!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00274604469335884!GO:0043068;positive regulation of programmed cell death;0.00276549863462144!GO:0044420;extracellular matrix part;0.00277247822931318!GO:0031589;cell-substrate adhesion;0.00287027640520086!GO:0001726;ruffle;0.00287027640520086!GO:0030176;integral to endoplasmic reticulum membrane;0.00303777482131802!GO:0006979;response to oxidative stress;0.00320522655583438!GO:0022890;inorganic cation transmembrane transporter activity;0.00324003777349149!GO:0030658;transport vesicle membrane;0.00325220026129406!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0033103584880405!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00333774016389914!GO:0046467;membrane lipid biosynthetic process;0.00371386872981678!GO:0043681;protein import into mitochondrion;0.00386402410516908!GO:0051128;regulation of cellular component organization and biogenesis;0.00398662658928738!GO:0003729;mRNA binding;0.0040737828845918!GO:0030041;actin filament polymerization;0.00410599244683854!GO:0045792;negative regulation of cell size;0.00414736851918298!GO:0000059;protein import into nucleus, docking;0.00418233166543199!GO:0051168;nuclear export;0.0043308887305036!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00440396529299083!GO:0043284;biopolymer biosynthetic process;0.00456797385877213!GO:0008139;nuclear localization sequence binding;0.0047870334661139!GO:0030134;ER to Golgi transport vesicle;0.00480432497482469!GO:0030308;negative regulation of cell growth;0.0048098911312831!GO:0006509;membrane protein ectodomain proteolysis;0.0048098911312831!GO:0033619;membrane protein proteolysis;0.0048098911312831!GO:0030659;cytoplasmic vesicle membrane;0.00482834693163296!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00510542033046772!GO:0042802;identical protein binding;0.0052099511136918!GO:0008154;actin polymerization and/or depolymerization;0.00545720292822618!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00549033159183588!GO:0003690;double-stranded DNA binding;0.00581579068636583!GO:0008632;apoptotic program;0.00600549492296312!GO:0030127;COPII vesicle coat;0.00610512495492151!GO:0012507;ER to Golgi transport vesicle membrane;0.00610512495492151!GO:0004674;protein serine/threonine kinase activity;0.00613012460171267!GO:0006402;mRNA catabolic process;0.00640229328405344!GO:0030145;manganese ion binding;0.00657777620884919!GO:0043492;ATPase activity, coupled to movement of substances;0.00669633615608958!GO:0030118;clathrin coat;0.00670845336051761!GO:0048500;signal recognition particle;0.00686979390006299!GO:0000902;cell morphogenesis;0.00687487699805133!GO:0032989;cellular structure morphogenesis;0.00687487699805133!GO:0006818;hydrogen transport;0.00737694182047333!GO:0017166;vinculin binding;0.00755991089923744!GO:0015992;proton transport;0.00755991089923744!GO:0035258;steroid hormone receptor binding;0.00762108326193155!GO:0005581;collagen;0.00762108326193155!GO:0046489;phosphoinositide biosynthetic process;0.00787785892984171!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00789083314411962!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00796109061533183!GO:0005774;vacuolar membrane;0.00798175456717009!GO:0000082;G1/S transition of mitotic cell cycle;0.00846182507647958!GO:0065009;regulation of a molecular function;0.00889148834196357!GO:0006383;transcription from RNA polymerase III promoter;0.00902245942555112!GO:0000279;M phase;0.00914985952829635!GO:0006650;glycerophospholipid metabolic process;0.0093050378760696!GO:0008186;RNA-dependent ATPase activity;0.00935115221692979!GO:0030660;Golgi-associated vesicle membrane;0.00953191648370827!GO:0046519;sphingoid metabolic process;0.00987650861535767!GO:0003899;DNA-directed RNA polymerase activity;0.0100770431648246!GO:0007242;intracellular signaling cascade;0.0106480933891538!GO:0008047;enzyme activator activity;0.0107558336584957!GO:0008283;cell proliferation;0.0107847319605573!GO:0005583;fibrillar collagen;0.0108648916454955!GO:0051087;chaperone binding;0.0111067882460932!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0111443179079159!GO:0045045;secretory pathway;0.0111443179079159!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111443179079159!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0113067942986087!GO:0006790;sulfur metabolic process;0.0117687500818904!GO:0031625;ubiquitin protein ligase binding;0.0118863970130649!GO:0031901;early endosome membrane;0.0119301095459829!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121518585735693!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121518585735693!GO:0006595;polyamine metabolic process;0.0121518585735693!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121518585735693!GO:0015002;heme-copper terminal oxidase activity;0.0121518585735693!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121518585735693!GO:0004129;cytochrome-c oxidase activity;0.0121518585735693!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0122178395681252!GO:0006414;translational elongation;0.0124202142795935!GO:0044433;cytoplasmic vesicle part;0.0124596428574378!GO:0031418;L-ascorbic acid binding;0.0124596428574378!GO:0012506;vesicle membrane;0.0126686154139895!GO:0008286;insulin receptor signaling pathway;0.0130681714644375!GO:0030833;regulation of actin filament polymerization;0.0131585530451081!GO:0006740;NADPH regeneration;0.0131585530451081!GO:0006098;pentose-phosphate shunt;0.0131585530451081!GO:0030521;androgen receptor signaling pathway;0.0132903031042408!GO:0005819;spindle;0.0132903031042408!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0134703989275942!GO:0019752;carboxylic acid metabolic process;0.0136674876448948!GO:0009966;regulation of signal transduction;0.0139769816332002!GO:0030880;RNA polymerase complex;0.0139769816332002!GO:0006082;organic acid metabolic process;0.0139966265377759!GO:0005869;dynactin complex;0.014211196696768!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0144212298935811!GO:0003746;translation elongation factor activity;0.0144212298935811!GO:0050811;GABA receptor binding;0.0145525089541562!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0146217491521022!GO:0045047;protein targeting to ER;0.0146217491521022!GO:0031543;peptidyl-proline dioxygenase activity;0.0147975781709183!GO:0008484;sulfuric ester hydrolase activity;0.0157883448074432!GO:0006626;protein targeting to mitochondrion;0.0157883448074432!GO:0051287;NAD binding;0.016018308396559!GO:0006917;induction of apoptosis;0.0161922784546884!GO:0005862;muscle thin filament tropomyosin;0.0163148881208214!GO:0030518;steroid hormone receptor signaling pathway;0.0163148881208214!GO:0003779;actin binding;0.0165372210129007!GO:0006984;ER-nuclear signaling pathway;0.0169275083867377!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.016973510641804!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.016973510641804!GO:0006607;NLS-bearing substrate import into nucleus;0.0170088267188018!GO:0008610;lipid biosynthetic process;0.0172127390557715!GO:0033673;negative regulation of kinase activity;0.0173050495080818!GO:0006469;negative regulation of protein kinase activity;0.0173050495080818!GO:0006672;ceramide metabolic process;0.0173050495080818!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0173050495080818!GO:0031529;ruffle organization and biogenesis;0.0175229980218624!GO:0051059;NF-kappaB binding;0.0183037359751973!GO:0006352;transcription initiation;0.0183647959237662!GO:0007034;vacuolar transport;0.0188539200270944!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0193638805222006!GO:0008629;induction of apoptosis by intracellular signals;0.0194998756243988!GO:0051101;regulation of DNA binding;0.0197742809186116!GO:0008637;apoptotic mitochondrial changes;0.0198735552406653!GO:0044437;vacuolar part;0.0199788689824519!GO:0031902;late endosome membrane;0.0203738162372696!GO:0051540;metal cluster binding;0.0203821136181217!GO:0051536;iron-sulfur cluster binding;0.0203821136181217!GO:0033559;unsaturated fatty acid metabolic process;0.0205190557577892!GO:0006636;unsaturated fatty acid biosynthetic process;0.0205190557577892!GO:0051270;regulation of cell motility;0.0205835776167535!GO:0019798;procollagen-proline dioxygenase activity;0.0207671506805041!GO:0015631;tubulin binding;0.0208450743319435!GO:0005765;lysosomal membrane;0.0208723691027292!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0208723691027292!GO:0030125;clathrin vesicle coat;0.0210829172407873!GO:0030665;clathrin coated vesicle membrane;0.0210829172407873!GO:0012502;induction of programmed cell death;0.0211009686946945!GO:0004004;ATP-dependent RNA helicase activity;0.0211051077423854!GO:0008234;cysteine-type peptidase activity;0.021280555071236!GO:0016126;sterol biosynthetic process;0.0214086990045521!GO:0016791;phosphoric monoester hydrolase activity;0.0214173781719196!GO:0045926;negative regulation of growth;0.0214470436600905!GO:0007041;lysosomal transport;0.0215489638972764!GO:0035035;histone acetyltransferase binding;0.021603616535503!GO:0006897;endocytosis;0.0219742555301714!GO:0010324;membrane invagination;0.0219742555301714!GO:0006401;RNA catabolic process;0.0222692623461039!GO:0006611;protein export from nucleus;0.0223046526369812!GO:0030032;lamellipodium biogenesis;0.0230327449116092!GO:0005637;nuclear inner membrane;0.0231808941830233!GO:0006497;protein amino acid lipidation;0.0232309363838215!GO:0006892;post-Golgi vesicle-mediated transport;0.0233102179269073!GO:0004722;protein serine/threonine phosphatase activity;0.0236334571591424!GO:0040029;regulation of gene expression, epigenetic;0.0242025215783707!GO:0006839;mitochondrial transport;0.0244115252173826!GO:0051348;negative regulation of transferase activity;0.0245297609894558!GO:0042158;lipoprotein biosynthetic process;0.0245333502326357!GO:0050681;androgen receptor binding;0.0246274409940887!GO:0016363;nuclear matrix;0.0252106414996774!GO:0006354;RNA elongation;0.025245074645773!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0254602449411534!GO:0000428;DNA-directed RNA polymerase complex;0.0254602449411534!GO:0048144;fibroblast proliferation;0.0255117648502875!GO:0048145;regulation of fibroblast proliferation;0.0255117648502875!GO:0045334;clathrin-coated endocytic vesicle;0.0256044647488981!GO:0004228;gelatinase A activity;0.0256044647488981!GO:0001955;blood vessel maturation;0.0256044647488981!GO:0000049;tRNA binding;0.0256044647488981!GO:0006643;membrane lipid metabolic process;0.0256044647488981!GO:0051235;maintenance of localization;0.0256051658118206!GO:0032906;transforming growth factor-beta2 production;0.0258623321121688!GO:0032909;regulation of transforming growth factor-beta2 production;0.0258623321121688!GO:0007030;Golgi organization and biogenesis;0.025914376985926!GO:0043022;ribosome binding;0.0265037131930714!GO:0005801;cis-Golgi network;0.0270145379198295!GO:0008312;7S RNA binding;0.0272284044908063!GO:0005096;GTPase activator activity;0.0275759262117364!GO:0008383;manganese superoxide dismutase activity;0.0288659823226992!GO:0001315;age-dependent response to reactive oxygen species;0.0288659823226992!GO:0000287;magnesium ion binding;0.0298537642795789!GO:0008180;signalosome;0.0304465204572343!GO:0016584;nucleosome positioning;0.0310441182901547!GO:0030119;AP-type membrane coat adaptor complex;0.0313968927770991!GO:0048146;positive regulation of fibroblast proliferation;0.0321506690418351!GO:0004721;phosphoprotein phosphatase activity;0.0323618686958895!GO:0005832;chaperonin-containing T-complex;0.0326451515449004!GO:0031301;integral to organelle membrane;0.0331771217807604!GO:0008022;protein C-terminus binding;0.0332706833770922!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343958474318004!GO:0022415;viral reproductive process;0.0344456335795073!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0345016432491896!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0346066900951766!GO:0033043;regulation of organelle organization and biogenesis;0.0346066900951766!GO:0004860;protein kinase inhibitor activity;0.034733767112217!GO:0008287;protein serine/threonine phosphatase complex;0.0348444436779764!GO:0030503;regulation of cell redox homeostasis;0.0354757311176864!GO:0045936;negative regulation of phosphate metabolic process;0.0361900060732466!GO:0018193;peptidyl-amino acid modification;0.0368177934374335!GO:0030984;kininogen binding;0.036970202075834!GO:0004213;cathepsin B activity;0.036970202075834!GO:0030384;phosphoinositide metabolic process;0.036970202075834!GO:0003756;protein disulfide isomerase activity;0.0385053039596062!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0385053039596062!GO:0001516;prostaglandin biosynthetic process;0.0385053039596062!GO:0046457;prostanoid biosynthetic process;0.0385053039596062!GO:0005100;Rho GTPase activator activity;0.0390881396070196!GO:0043433;negative regulation of transcription factor activity;0.0406473543604054!GO:0006739;NADP metabolic process;0.040650824016704!GO:0006261;DNA-dependent DNA replication;0.0410662386055702!GO:0016272;prefoldin complex;0.0412014451261678!GO:0000339;RNA cap binding;0.0415639286024476!GO:0005684;U2-dependent spliceosome;0.041684745495404!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0435191420485947!GO:0000786;nucleosome;0.0435191420485947!GO:0051272;positive regulation of cell motility;0.0435992001423377!GO:0040017;positive regulation of locomotion;0.0435992001423377!GO:0030140;trans-Golgi network transport vesicle;0.0438917473417791!GO:0032940;secretion by cell;0.0446068575595522!GO:0051052;regulation of DNA metabolic process;0.0447267142781331!GO:0006518;peptide metabolic process;0.0450464388230058!GO:0007265;Ras protein signal transduction;0.0452742786468887!GO:0006376;mRNA splice site selection;0.0458138619518605!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0458138619518605!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0461776878023334!GO:0005159;insulin-like growth factor receptor binding;0.0462584728631672!GO:0009615;response to virus;0.0466183393722481!GO:0040011;locomotion;0.0479796182339252!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0481082949821831!GO:0005811;lipid particle;0.0481082949821831!GO:0030128;clathrin coat of endocytic vesicle;0.0481082949821831!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0481082949821831!GO:0030122;AP-2 adaptor complex;0.0481082949821831!GO:0046426;negative regulation of JAK-STAT cascade;0.0481082949821831!GO:0007021;tubulin folding;0.0482705330514767!GO:0006778;porphyrin metabolic process;0.0483078600086267!GO:0033013;tetrapyrrole metabolic process;0.0483078600086267!GO:0003684;damaged DNA binding;0.0490379898475837!GO:0030522;intracellular receptor-mediated signaling pathway;0.0494114539099655!GO:0030911;TPR domain binding;0.0494130434625957 | |||
|sample_id=11380 | |sample_id=11380 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=ESR1:1.81258908793;FOXL1:1.79411405024;TFAP4:1.57476926271;GLI1..3:1.53970865509;TFAP2{A,C}:1.53279415637;MAZ:1.42650682166;MYBL2:1.35556688214;ZNF238:1.35278429337;TFCP2:1.27797481;ALX4:1.26680508878;NFATC1..3:1.25498992692;MTE{core}:1.24761247046;TFAP2B:1.23513874702;HMGA1,2:1.23270763891;TFDP1:1.22821192782;RXR{A,B,G}:1.20839160757;UFEwm:1.10846098123;HES1:1.09809480263;XCPE1{core}:1.07745147115;HIC1:1.06747884559;EBF1:1.05401999343;EGR1..3:1.01687026789;PATZ1:1.00454294972;TAL1_TCF{3,4,12}:0.999234253826;TEAD1:0.99187157728;ATF6:0.950897824564;TLX1..3_NFIC{dimer}:0.943277437962;GTF2A1,2:0.94050321117;XBP1:0.928457419934;PPARG:0.890237796416;IRF1,2:0.868901288917;PAX1,9:0.864316897335;SPZ1:0.851571768692;MAFB:0.798765314225;NKX2-2,8:0.787123496694;GZF1:0.77660670058;MZF1:0.774794105647;TP53:0.769284734149;HAND1,2:0.748058419264;EVI1:0.740905215484;ZNF423:0.736502780328;SRF:0.73592943832;MTF1:0.722552709085;KLF4:0.669489033281;GTF2I:0.658203629233;IKZF1:0.644340293542;SP1:0.62971127852;HMX1:0.600538105336;PAX5:0.580030996595;LHX3,4:0.565406302979;SREBF1,2:0.531215357931;ZBTB6:0.525272642149;PAX3,7:0.480090564323;NKX3-1:0.476836169934;ZIC1..3:0.470798843906;NFIX:0.470309263624;ZFP161:0.460274275003;GFI1B:0.44930129825;GCM1,2:0.438194418459;bHLH_family:0.425065695691;MYFfamily:0.420530938758;STAT2,4,6:0.416580919789;NHLH1,2:0.399906121102;RREB1:0.395507597721;NANOG{mouse}:0.394356634091;NFE2L2:0.390703967264;TBP:0.383360504929;MED-1{core}:0.382569843187;PRDM1:0.367730672621;HBP1_HMGB_SSRP1_UBTF:0.360847466593;TBX4,5:0.359346304294;HIF1A:0.3111501651;FOXO1,3,4:0.282165199148;NR6A1:0.263065262451;IRF7:0.231629475723;SOX17:0.205355447499;NR3C1:0.204097962832;EN1,2:0.157997996173;NFE2L1:0.146385728854;JUN:0.128209051497;REST:0.0831292162226;GATA4:0.0541980484215;ZNF148:0.0525741470985;AHR_ARNT_ARNT2:0.0366825079797;CREB1:0.0306654199816;MEF2{A,B,C,D}:0.0292085862461;MYB:0.0273888451052;NKX2-3_NKX2-5:0.0198123884681;HOX{A4,D4}:0.00424051523889;HNF1A:-0.0140745713317;HLF:-0.0149004386423;POU6F1:-0.0338429511092;RXRA_VDR{dimer}:-0.0396326375347;GFI1:-0.0440898218485;POU3F1..4:-0.0489593704553;SOX5:-0.0540835245393;BACH2:-0.0551993079385;FOXD3:-0.0656050158249;CEBPA,B_DDIT3:-0.0663834438326;BREu{core}:-0.0757994914459;FOS_FOS{B,L1}_JUN{B,D}:-0.0820269898019;NFKB1_REL_RELA:-0.0849178018661;CDC5L:-0.0892740437725;ESRRA:-0.11046723953;HOX{A6,A7,B6,B7}:-0.112364589314;NKX2-1,4:-0.114222241147;ATF5_CREB3:-0.130378398082;NKX3-2:-0.130800672367;TOPORS:-0.154379994035;NFE2:-0.18371014283;SMAD1..7,9:-0.191608375695;STAT5{A,B}:-0.201649237327;RUNX1..3:-0.204110662648;HNF4A_NR2F1,2:-0.205029033526;ZNF143:-0.210369995529;FOX{D1,D2}:-0.213903981915;FOXA2:-0.216557034748;TEF:-0.232445157269;FOSL2:-0.232877083637;PAX8:-0.24683395856;NFIL3:-0.26325377271;CRX:-0.269641484399;ADNP_IRX_SIX_ZHX:-0.278699505711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290231127915;E2F1..5:-0.306168162299;FOX{F1,F2,J1}:-0.332114665274;AR:-0.348078679795;DBP:-0.360161695465;LEF1_TCF7_TCF7L1,2:-0.366198572152;RFX1:-0.368683432857;ATF4:-0.378662042937;AIRE:-0.389404399945;HOX{A5,B5}:-0.389546188469;DMAP1_NCOR{1,2}_SMARC:-0.39160591058;ZNF384:-0.403440740608;ELK1,4_GABP{A,B1}:-0.403595730973;NKX6-1,2:-0.418666226807;PITX1..3:-0.459871383472;ONECUT1,2:-0.464371364072;NR1H4:-0.475126418949;PBX1:-0.48057385735;POU5F1:-0.486812278521;ETS1,2:-0.494022104087;PAX4:-0.502646846316;YY1:-0.50452014951;POU1F1:-0.506477823109;PRRX1,2:-0.517963569256;NRF1:-0.519965789659;BPTF:-0.56246010747;SPIB:-0.566151744187;RBPJ:-0.578582106099;HSF1,2:-0.584249821819;SPI1:-0.603816198661;RORA:-0.627875202578;PAX2:-0.632007824049;NR5A1,2:-0.641854507221;T:-0.684891654757;CUX2:-0.699047306477;TGIF1:-0.708821820791;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.719748896265;LMO2:-0.722443724923;RFX2..5_RFXANK_RFXAP:-0.730209996754;ARID5B:-0.735326531844;ATF2:-0.736708867207;ELF1,2,4:-0.752781439842;FOXM1:-0.792518638614;FOX{I1,J2}:-0.79661720491;FOXN1:-0.810532497981;SOX2:-0.827125754047;NFY{A,B,C}:-0.827999490668;MYOD1:-0.830625394649;FOXP1:-0.836038407398;POU2F1..3:-0.899203163349;HOXA9_MEIS1:-0.906050614352;CDX1,2,4:-0.914439182387;GATA6:-0.990848894674;ZEB1:-0.991054636784;TLX2:-0.992086712426;PDX1:-1.00882178133;OCT4_SOX2{dimer}:-1.01364525624;EP300:-1.0310717271;ALX1:-1.03846492152;VSX1,2:-1.04679325986;FOXQ1:-1.05120583352;SOX{8,9,10}:-1.06264776699;FOXP3:-1.06529775922;SNAI1..3:-1.07701684401;STAT1,3:-1.11836011541;IKZF2:-1.17737876432;PAX6:-1.19885326721;ZBTB16:-1.23812233786;NANOG:-1.8010737083 | |top_motifs=ESR1:1.81258908793;FOXL1:1.79411405024;TFAP4:1.57476926271;GLI1..3:1.53970865509;TFAP2{A,C}:1.53279415637;MAZ:1.42650682166;MYBL2:1.35556688214;ZNF238:1.35278429337;TFCP2:1.27797481;ALX4:1.26680508878;NFATC1..3:1.25498992692;MTE{core}:1.24761247046;TFAP2B:1.23513874702;HMGA1,2:1.23270763891;TFDP1:1.22821192782;RXR{A,B,G}:1.20839160757;UFEwm:1.10846098123;HES1:1.09809480263;XCPE1{core}:1.07745147115;HIC1:1.06747884559;EBF1:1.05401999343;EGR1..3:1.01687026789;PATZ1:1.00454294972;TAL1_TCF{3,4,12}:0.999234253826;TEAD1:0.99187157728;ATF6:0.950897824564;TLX1..3_NFIC{dimer}:0.943277437962;GTF2A1,2:0.94050321117;XBP1:0.928457419934;PPARG:0.890237796416;IRF1,2:0.868901288917;PAX1,9:0.864316897335;SPZ1:0.851571768692;MAFB:0.798765314225;NKX2-2,8:0.787123496694;GZF1:0.77660670058;MZF1:0.774794105647;TP53:0.769284734149;HAND1,2:0.748058419264;EVI1:0.740905215484;ZNF423:0.736502780328;SRF:0.73592943832;MTF1:0.722552709085;KLF4:0.669489033281;GTF2I:0.658203629233;IKZF1:0.644340293542;SP1:0.62971127852;HMX1:0.600538105336;PAX5:0.580030996595;LHX3,4:0.565406302979;SREBF1,2:0.531215357931;ZBTB6:0.525272642149;PAX3,7:0.480090564323;NKX3-1:0.476836169934;ZIC1..3:0.470798843906;NFIX:0.470309263624;ZFP161:0.460274275003;GFI1B:0.44930129825;GCM1,2:0.438194418459;bHLH_family:0.425065695691;MYFfamily:0.420530938758;STAT2,4,6:0.416580919789;NHLH1,2:0.399906121102;RREB1:0.395507597721;NANOG{mouse}:0.394356634091;NFE2L2:0.390703967264;TBP:0.383360504929;MED-1{core}:0.382569843187;PRDM1:0.367730672621;HBP1_HMGB_SSRP1_UBTF:0.360847466593;TBX4,5:0.359346304294;HIF1A:0.3111501651;FOXO1,3,4:0.282165199148;NR6A1:0.263065262451;IRF7:0.231629475723;SOX17:0.205355447499;NR3C1:0.204097962832;EN1,2:0.157997996173;NFE2L1:0.146385728854;JUN:0.128209051497;REST:0.0831292162226;GATA4:0.0541980484215;ZNF148:0.0525741470985;AHR_ARNT_ARNT2:0.0366825079797;CREB1:0.0306654199816;MEF2{A,B,C,D}:0.0292085862461;MYB:0.0273888451052;NKX2-3_NKX2-5:0.0198123884681;HOX{A4,D4}:0.00424051523889;HNF1A:-0.0140745713317;HLF:-0.0149004386423;POU6F1:-0.0338429511092;RXRA_VDR{dimer}:-0.0396326375347;GFI1:-0.0440898218485;POU3F1..4:-0.0489593704553;SOX5:-0.0540835245393;BACH2:-0.0551993079385;FOXD3:-0.0656050158249;CEBPA,B_DDIT3:-0.0663834438326;BREu{core}:-0.0757994914459;FOS_FOS{B,L1}_JUN{B,D}:-0.0820269898019;NFKB1_REL_RELA:-0.0849178018661;CDC5L:-0.0892740437725;ESRRA:-0.11046723953;HOX{A6,A7,B6,B7}:-0.112364589314;NKX2-1,4:-0.114222241147;ATF5_CREB3:-0.130378398082;NKX3-2:-0.130800672367;TOPORS:-0.154379994035;NFE2:-0.18371014283;SMAD1..7,9:-0.191608375695;STAT5{A,B}:-0.201649237327;RUNX1..3:-0.204110662648;HNF4A_NR2F1,2:-0.205029033526;ZNF143:-0.210369995529;FOX{D1,D2}:-0.213903981915;FOXA2:-0.216557034748;TEF:-0.232445157269;FOSL2:-0.232877083637;PAX8:-0.24683395856;NFIL3:-0.26325377271;CRX:-0.269641484399;ADNP_IRX_SIX_ZHX:-0.278699505711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290231127915;E2F1..5:-0.306168162299;FOX{F1,F2,J1}:-0.332114665274;AR:-0.348078679795;DBP:-0.360161695465;LEF1_TCF7_TCF7L1,2:-0.366198572152;RFX1:-0.368683432857;ATF4:-0.378662042937;AIRE:-0.389404399945;HOX{A5,B5}:-0.389546188469;DMAP1_NCOR{1,2}_SMARC:-0.39160591058;ZNF384:-0.403440740608;ELK1,4_GABP{A,B1}:-0.403595730973;NKX6-1,2:-0.418666226807;PITX1..3:-0.459871383472;ONECUT1,2:-0.464371364072;NR1H4:-0.475126418949;PBX1:-0.48057385735;POU5F1:-0.486812278521;ETS1,2:-0.494022104087;PAX4:-0.502646846316;YY1:-0.50452014951;POU1F1:-0.506477823109;PRRX1,2:-0.517963569256;NRF1:-0.519965789659;BPTF:-0.56246010747;SPIB:-0.566151744187;RBPJ:-0.578582106099;HSF1,2:-0.584249821819;SPI1:-0.603816198661;RORA:-0.627875202578;PAX2:-0.632007824049;NR5A1,2:-0.641854507221;T:-0.684891654757;CUX2:-0.699047306477;TGIF1:-0.708821820791;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.719748896265;LMO2:-0.722443724923;RFX2..5_RFXANK_RFXAP:-0.730209996754;ARID5B:-0.735326531844;ATF2:-0.736708867207;ELF1,2,4:-0.752781439842;FOXM1:-0.792518638614;FOX{I1,J2}:-0.79661720491;FOXN1:-0.810532497981;SOX2:-0.827125754047;NFY{A,B,C}:-0.827999490668;MYOD1:-0.830625394649;FOXP1:-0.836038407398;POU2F1..3:-0.899203163349;HOXA9_MEIS1:-0.906050614352;CDX1,2,4:-0.914439182387;GATA6:-0.990848894674;ZEB1:-0.991054636784;TLX2:-0.992086712426;PDX1:-1.00882178133;OCT4_SOX2{dimer}:-1.01364525624;EP300:-1.0310717271;ALX1:-1.03846492152;VSX1,2:-1.04679325986;FOXQ1:-1.05120583352;SOX{8,9,10}:-1.06264776699;FOXP3:-1.06529775922;SNAI1..3:-1.07701684401;STAT1,3:-1.11836011541;IKZF2:-1.17737876432;PAX6:-1.19885326721;ZBTB16:-1.23812233786;NANOG:-1.8010737083 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11380-118B3;search_select_hide=table117:FF:11380-118B3 | |||
}} | }} | ||
Latest revision as of 17:56, 4 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor6 (PLH3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11996 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11996
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11996
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0215 |
| 10 | 10 | 0.169 |
| 100 | 100 | 0.436 |
| 101 | 101 | 0.168 |
| 102 | 102 | 0.132 |
| 103 | 103 | 0.382 |
| 104 | 104 | 0.48 |
| 105 | 105 | 0.153 |
| 106 | 106 | 0.988 |
| 107 | 107 | 0.528 |
| 108 | 108 | 0.721 |
| 109 | 109 | 0.348 |
| 11 | 11 | 0.147 |
| 110 | 110 | 0.0619 |
| 111 | 111 | 0.14 |
| 112 | 112 | 0.656 |
| 113 | 113 | 0.183 |
| 114 | 114 | 0.0621 |
| 115 | 115 | 0.0249 |
| 116 | 116 | 0.597 |
| 117 | 117 | 0.0784 |
| 118 | 118 | 0.0575 |
| 119 | 119 | 0.0715 |
| 12 | 12 | 0.26 |
| 120 | 120 | 0.805 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.237 |
| 123 | 123 | 0.00189 |
| 124 | 124 | 0.209 |
| 125 | 125 | 0.859 |
| 126 | 126 | 0.465 |
| 127 | 127 | 0.732 |
| 128 | 128 | 0.483 |
| 129 | 129 | 0.161 |
| 13 | 13 | 0.0431 |
| 130 | 130 | 0.22 |
| 131 | 131 | 0.751 |
| 132 | 132 | 0.398 |
| 133 | 133 | 0.259 |
| 134 | 134 | 0.0514 |
| 135 | 135 | 0.975 |
| 136 | 136 | 0.17 |
| 137 | 137 | 0.993 |
| 138 | 138 | 0.487 |
| 139 | 139 | 0.011 |
| 14 | 14 | 0.361 |
| 140 | 140 | 0.196 |
| 141 | 141 | 0.00279 |
| 142 | 142 | 0.997 |
| 143 | 143 | 0.734 |
| 144 | 144 | 0.487 |
| 145 | 145 | 0.431 |
| 146 | 146 | 0.657 |
| 147 | 147 | 0.287 |
| 148 | 148 | 0.306 |
| 149 | 149 | 0.806 |
| 15 | 15 | 0.134 |
| 150 | 150 | 0.527 |
| 151 | 151 | 0.635 |
| 152 | 152 | 0.0176 |
| 153 | 153 | 0.352 |
| 154 | 154 | 0.94 |
| 155 | 155 | 0.0272 |
| 156 | 156 | 0.641 |
| 157 | 157 | 0.0919 |
| 158 | 158 | 0.0135 |
| 159 | 159 | 0.434 |
| 16 | 16 | 0.684 |
| 160 | 160 | 0.211 |
| 161 | 161 | 0.419 |
| 162 | 162 | 0.792 |
| 163 | 163 | 0.76 |
| 164 | 164 | 0.708 |
| 165 | 165 | 0.643 |
| 166 | 166 | 0.0228 |
| 167 | 167 | 0.206 |
| 168 | 168 | 0.375 |
| 169 | 169 | 0.531 |
| 17 | 17 | 0.662 |
| 18 | 18 | 0.952 |
| 19 | 19 | 0.53 |
| 2 | 2 | 0.563 |
| 20 | 20 | 0.505 |
| 21 | 21 | 0.98 |
| 22 | 22 | 0.864 |
| 23 | 23 | 0.856 |
| 24 | 24 | 0.197 |
| 25 | 25 | 0.139 |
| 26 | 26 | 0.755 |
| 27 | 27 | 0.719 |
| 28 | 28 | 0.297 |
| 29 | 29 | 0.163 |
| 3 | 3 | 0.177 |
| 30 | 30 | 0.302 |
| 31 | 31 | 0.93 |
| 32 | 32 | 1.20706e-8 |
| 33 | 33 | 0.637 |
| 34 | 34 | 0.889 |
| 35 | 35 | 0.121 |
| 36 | 36 | 0.00886 |
| 37 | 37 | 0.468 |
| 38 | 38 | 0.232 |
| 39 | 39 | 0.805 |
| 4 | 4 | 0.288 |
| 40 | 40 | 0.0477 |
| 41 | 41 | 0.335 |
| 42 | 42 | 0.0967 |
| 43 | 43 | 0.37 |
| 44 | 44 | 0.666 |
| 45 | 45 | 0.875 |
| 46 | 46 | 0.267 |
| 47 | 47 | 0.032 |
| 48 | 48 | 0.0834 |
| 49 | 49 | 0.0965 |
| 5 | 5 | 0.421 |
| 50 | 50 | 0.62 |
| 51 | 51 | 0.655 |
| 52 | 52 | 0.639 |
| 53 | 53 | 0.15 |
| 54 | 54 | 0.867 |
| 55 | 55 | 0.878 |
| 56 | 56 | 0.428 |
| 57 | 57 | 0.185 |
| 58 | 58 | 0.199 |
| 59 | 59 | 0.518 |
| 6 | 6 | 0.948 |
| 60 | 60 | 0.643 |
| 61 | 61 | 0.399 |
| 62 | 62 | 0.233 |
| 63 | 63 | 0.865 |
| 64 | 64 | 0.177 |
| 65 | 65 | 0.894 |
| 66 | 66 | 0.365 |
| 67 | 67 | 0.987 |
| 68 | 68 | 0.22 |
| 69 | 69 | 0.933 |
| 7 | 7 | 0.0582 |
| 70 | 70 | 0.301 |
| 71 | 71 | 0.052 |
| 72 | 72 | 0.339 |
| 73 | 73 | 0.33 |
| 74 | 74 | 0.814 |
| 75 | 75 | 0.0711 |
| 76 | 76 | 0.911 |
| 77 | 77 | 0.993 |
| 78 | 78 | 0.0365 |
| 79 | 79 | 0.00651 |
| 8 | 8 | 0.456 |
| 80 | 80 | 0.292 |
| 81 | 81 | 0.312 |
| 82 | 82 | 0.0801 |
| 83 | 83 | 0.372 |
| 84 | 84 | 0.907 |
| 85 | 85 | 0.366 |
| 86 | 86 | 0.742 |
| 87 | 87 | 0.184 |
| 88 | 88 | 0.578 |
| 89 | 89 | 0.654 |
| 9 | 9 | 0.732 |
| 90 | 90 | 0.0663 |
| 91 | 91 | 0.218 |
| 92 | 92 | 0.505 |
| 93 | 93 | 0.394 |
| 94 | 94 | 0.223 |
| 95 | 95 | 0.531 |
| 96 | 96 | 0.214 |
| 97 | 97 | 0.468 |
| 98 | 98 | 0.145 |
| 99 | 99 | 0.06 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11996
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
