FF:11694-123A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005453 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005453 | ||
|accession_numbers=CAGE;DRX008109;DRR008981;DRZ000406;DRZ001791;DRZ011756;DRZ013141 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037064;DRR041430;DRZ007072 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.15!369.27!OSR1;;chr5:153857778..153857794,-!p1@HAND1!2.11!129.25!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.79!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.75!64.36!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.12!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.39!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.52!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.63!41.68!ZBED2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.88!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!179.10!SNAI2;;chr8:102504690..102504704,+!p3@GRHL2!1.48!29.54!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.48!29.01!HAND2;;chr5:2751762..2751784,-!p1@IRX2!1.46!27.70!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.44!26.64!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.65!TFAP2C;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.06!HIF3A;;chr4:188916918..188916942,+!p1@ZFP42!1.40!24.27!ZFP42;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.37!445.77!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.37!60.93!EPAS1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.85!HEY1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.24!CREB3L1;;chr19:46800289..46800327,+!p2@HIF3A!1.21!15.03!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!1.15!13.19!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.19!IRX1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.19!SOX11;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.86!FOXD1;;chr5:153857800..153857812,-!p2@HAND1!1.10!11.61!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.09!11.34!HES2;;chr11:46299539..46299620,+!p2@CREB3L1!1.07!18.20!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.55!IRX1;;chr2:231084820..231084836,-!p5@SP110!1.03!11.34!SP110;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.76!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.02!9.50!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.70!ZNF668;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.44!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.44!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.59!PPP1R13L;;chr17:7492684..7492778,-!p2@SOX15!0.96!17.41!SOX15;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.81!KLF4;;chr16:86612320..86612394,+!p1@FOXL1!0.96!8.18!FOXL1;;chr2:19558327..19558334,-!p2@OSR1!0.96!8.18!OSR1;;chr16:67881588..67881612,-!p2@CENPT!0.95!10.81!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.93!8.97!GATA3;;chr19:926001..926046,+!p1@ARID3A!0.92!26.11!ARID3A;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.44!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr4:299227..299272,-!p1@ZNF732!0.90!6.86!ZNF732;;chr14:75988771..75988826,+!p1@BATF!0.88!8.97!BATF;;chr20:39317868..39317884,-!p1@MAFB!0.87!81.50!MAFB;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.33!OVOL2;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.29!NR2F6;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.07!HOXC4;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.07!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.08!HMGA2;;chr19:926055..926068,+!p2@ARID3A!0.84!13.45!ARID3A;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.70!ZBTB16;;chr5:153857819..153857824,-!p3@HAND1!0.83!5.80!HAND1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.80!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.77!FOXC2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.54!ZFP57;;chr1:209979411..209979433,-!p2@IRF6!0.82!5.54!IRF6;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.33!HEY1;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.76!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.79!7.12!ZFHX3;;chr2:16080659..16080685,+!p1@MYCN!0.78!5.01!MYCN;;chr9:110250697..110250738,-!p2@KLF4!0.77!5.80!KLF4;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.42!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.75!71.48!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.75!7.65!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.91!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr1:209979449..209979460,-!p3@IRF6!0.74!4.48!IRF6;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.18!EPAS1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.33!NR2F2;;chr1:38512457..38512474,-!p1@POU3F1!0.72!4.75!POU3F1;;chr9:110252035..110252057,-!p1@KLF4!0.71!74.91!KLF4;;chr2:60780607..60780624,-!p2@BCL11A!0.69!13.19!BCL11A;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.39!PCBP4;;chr3:52001426..52001447,-!p3@PCBP4!0.68!11.87!PCBP4;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.54!ZNF503;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.75!TBX18;;chrX:56258844..56258882,+!p1@KLF8!0.67!5.28!KLF8;;chr10:77161504..77161530,-!p1@ZNF503!0.66!54.86!ZNF503;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.33!ZBTB16;;chr5:72744445..72744466,-!p2@FOXD1!0.66!6.33!FOXD1;;chr16:73082004..73082033,-!p5@ZFHX3!0.66!6.07!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!0.65!3.96!NR2F2;;chr8:102504932..102504952,+!p4@GRHL2!0.65!3.43!GRHL2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.00!EPAS1;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.16!MLLT11;;chr20:2673383..2673441,+!p1@EBF4!0.63!5.54!EBF4;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS2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| |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.15!369.27!OSR1;;chr5:153857778..153857794,-!p1@HAND1!2.11!129.25!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.79!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.75!64.36!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.12!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.39!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.52!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.63!41.68!ZBED2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.88!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!179.10!SNAI2;;chr8:102504690..102504704,+!p3@GRHL2!1.48!29.54!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.48!29.01!HAND2;;chr5:2751762..2751784,-!p1@IRX2!1.46!27.70!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.44!26.64!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.65!TFAP2C;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.06!HIF3A;;chr4:188916918..188916942,+!p1@ZFP42!1.40!24.27!ZFP42;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.37!445.77!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.37!60.93!EPAS1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.85!HEY1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.24!CREB3L1;;chr19:46800289..46800327,+!p2@HIF3A!1.21!15.03!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!1.15!13.19!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.19!IRX1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.19!SOX11;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.86!FOXD1;;chr5:153857800..153857812,-!p2@HAND1!1.10!11.61!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.09!11.34!HES2;;chr11:46299539..46299620,+!p2@CREB3L1!1.07!18.20!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.55!IRX1;;chr2:231084820..231084836,-!p5@SP110!1.03!11.34!SP110;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.76!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.02!9.50!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.70!ZNF668;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.44!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.44!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.59!PPP1R13L;;chr17:7492684..7492778,-!p2@SOX15!0.96!17.41!SOX15;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.81!KLF4;;chr16:86612320..86612394,+!p1@FOXL1!0.96!8.18!FOXL1;;chr2:19558327..19558334,-!p2@OSR1!0.96!8.18!OSR1;;chr16:67881588..67881612,-!p2@CENPT!0.95!10.81!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.93!8.97!GATA3;;chr19:926001..926046,+!p1@ARID3A!0.92!26.11!ARID3A;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.44!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr4:299227..299272,-!p1@ZNF732!0.90!6.86!ZNF732;;chr14:75988771..75988826,+!p1@BATF!0.88!8.97!BATF;;chr20:39317868..39317884,-!p1@MAFB!0.87!81.50!MAFB;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.33!OVOL2;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.29!NR2F6;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.07!HOXC4;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.07!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.08!HMGA2;;chr19:926055..926068,+!p2@ARID3A!0.84!13.45!ARID3A;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.70!ZBTB16;;chr5:153857819..153857824,-!p3@HAND1!0.83!5.80!HAND1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.80!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.77!FOXC2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.54!ZFP57;;chr1:209979411..209979433,-!p2@IRF6!0.82!5.54!IRF6;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.33!HEY1;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.76!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.79!7.12!ZFHX3;;chr2:16080659..16080685,+!p1@MYCN!0.78!5.01!MYCN;;chr9:110250697..110250738,-!p2@KLF4!0.77!5.80!KLF4;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.42!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.75!71.48!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.75!7.65!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.91!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr1:209979449..209979460,-!p3@IRF6!0.74!4.48!IRF6;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.18!EPAS1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.33!NR2F2;;chr1:38512457..38512474,-!p1@POU3F1!0.72!4.75!POU3F1;;chr9:110252035..110252057,-!p1@KLF4!0.71!74.91!KLF4;;chr2:60780607..60780624,-!p2@BCL11A!0.69!13.19!BCL11A;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.39!PCBP4;;chr3:52001426..52001447,-!p3@PCBP4!0.68!11.87!PCBP4;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.54!ZNF503;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.75!TBX18;;chrX:56258844..56258882,+!p1@KLF8!0.67!5.28!KLF8;;chr10:77161504..77161530,-!p1@ZNF503!0.66!54.86!ZNF503;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.33!ZBTB16;;chr5:72744445..72744466,-!p2@FOXD1!0.66!6.33!FOXD1;;chr16:73082004..73082033,-!p5@ZFHX3!0.66!6.07!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!0.65!3.96!NR2F2;;chr8:102504932..102504952,+!p4@GRHL2!0.65!3.43!GRHL2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.00!EPAS1;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.16!MLLT11;;chr20:2673383..2673441,+!p1@EBF4!0.63!5.54!EBF4;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11694-123A2 | |id=FF:11694-123A2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000009 | ||
|is_obsolete= | |||
|library_id=CNhs12125 | |||
|library_id_phase_based=2:CNhs12125 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11694 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGAAA.11694 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11694 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGAAA.11694 | |||
|name=Amniotic Epithelial Cells, donor3 | |name=Amniotic Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12125,LSID839,release011,COMPLETED | |profile_hcage=CNhs12125,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC7105 | |rna_catalog_number=SC7105 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=123A2 | |rna_tube_id=123A2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GTGAAA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:4229 | |sample_cell_catalog=lot:4229 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=XCPE1{core}:1.53674754509;ZNF148:1.52209059906;GLI1..3:1.51983168826;HOX{A5,B5}:1.48791360227;TBX4,5:1.40573919308;TFAP2{A,C}:1.36466803148;PPARG:1.28786191579;ZNF384:1.18700600414;SNAI1..3:1.16856693471;TEAD1:1.16557186504;HAND1,2:1.15448351;TP53:1.1316013646;GCM1,2:1.12250261649;RXRA_VDR{dimer}:1.06058676707;NKX2-3_NKX2-5:1.0034362069;ZIC1..3:0.998438497153;ZEB1:0.961685713455;ESR1:0.957588297953;ZNF238:0.925954674568;TFCP2:0.925828218554;PAX5:0.851574327757;MAZ:0.814529889232;RORA:0.787188976705;ZNF423:0.743003101218;ONECUT1,2:0.721788499931;EBF1:0.701473310778;GTF2A1,2:0.666635767025;SP1:0.608880259542;RXR{A,B,G}:0.605552690968;EN1,2:0.593833450697;NR3C1:0.593709407667;UFEwm:0.549230857341;HIC1:0.544437571352;TFAP4:0.527575063696;NKX2-1,4:0.520752052723;POU2F1..3:0.511877881684;KLF4:0.492740341906;PAX1,9:0.450436390731;FOXM1:0.408946932193;TEF:0.406642930457;AIRE:0.392252949831;NR6A1:0.385615347069;HMX1:0.363527533386;TLX1..3_NFIC{dimer}:0.335919203689;TFAP2B:0.324368788639;CDC5L:0.320929022798;TOPORS:0.292452193526;LEF1_TCF7_TCF7L1,2:0.288595127876;FOS_FOS{B,L1}_JUN{B,D}:0.282314957258;NKX2-2,8:0.276818880895;AR:0.267271196223;TBP:0.265294886283;GFI1:0.262371449251;BACH2:0.252530877672;HOX{A4,D4}:0.249659532524;PAX8:0.220199126732;SPZ1:0.199450806085;GTF2I:0.196864592596;SOX17:0.195985755573;ESRRA:0.194919850092;LHX3,4:0.184858865004;NR1H4:0.182232179558;EP300:0.173834555565;MYOD1:0.163692968274;PAX4:0.156448122172;PBX1:0.155443867252;FOXL1:0.144270045797;GZF1:0.140051510076;FOSL2:0.134831605829;MTF1:0.120038802132;ZBTB6:0.116901200603;HLF:0.113088384533;DBP:0.104407668854;STAT5{A,B}:0.0878200468676;XBP1:0.0587518567664;ALX4:0.0563700767953;RREB1:0.052565976189;POU6F1:0.0398163359755;JUN:0.0306027373729;POU3F1..4:0.0271250530946;HOX{A6,A7,B6,B7}:0.0101948048975;IKZF1:-0.0195291727023;E2F1..5:-0.0328691369932;NR5A1,2:-0.0397315541223;bHLH_family:-0.0414607877052;SRF:-0.0429405422841;HNF1A:-0.0599697216976;MED-1{core}:-0.0657970741867;GATA6:-0.093709307229;HOXA9_MEIS1:-0.100279750956;NFY{A,B,C}:-0.111508604428;MTE{core}:-0.121433361237;TFDP1:-0.139156179026;TLX2:-0.145681835194;ADNP_IRX_SIX_ZHX:-0.149016191352;SOX5:-0.151067577175;ARID5B:-0.172984766627;PITX1..3:-0.175325967891;NFE2:-0.184605544475;HIF1A:-0.19878144875;EVI1:-0.199174027431;NHLH1,2:-0.211599363006;NFE2L2:-0.21984856909;SOX{8,9,10}:-0.236287061;POU1F1:-0.24717091501;HNF4A_NR2F1,2:-0.252687587502;FOXQ1:-0.256029836923;PATZ1:-0.270406401887;SOX2:-0.284422414623;GFI1B:-0.29914963702;TAL1_TCF{3,4,12}:-0.315014309544;NFKB1_REL_RELA:-0.325404806901;MYB:-0.331993390376;SMAD1..7,9:-0.339148869133;MYBL2:-0.356127366115;MZF1:-0.399006395902;LMO2:-0.400947676061;NANOG:-0.403656972144;ZNF143:-0.423862039431;ATF2:-0.425053957558;EGR1..3:-0.431045400604;MEF2{A,B,C,D}:-0.442219985187;ATF6:-0.445932260271;FOXA2:-0.455500435254;NKX3-2:-0.464268722372;NFIL3:-0.472179505181;YY1:-0.473658015279;REST:-0.483634888438;CRX:-0.485439916459;ETS1,2:-0.500393964222;PAX3,7:-0.504493607401;FOXO1,3,4:-0.509501882895;RFX1:-0.525833091159;OCT4_SOX2{dimer}:-0.541178202365;PAX2:-0.552008857014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.552725509891;HES1:-0.57326997151;RUNX1..3:-0.576928796521;NANOG{mouse}:-0.581306991857;PRDM1:-0.619724380925;PRRX1,2:-0.658694830473;HSF1,2:-0.658713675096;HMGA1,2:-0.661700517696;SPIB:-0.697216570111;SPI1:-0.715836716724;STAT1,3:-0.767347346259;ALX1:-0.770417732673;CEBPA,B_DDIT3:-0.776309424636;NFATC1..3:-0.777762213459;NKX3-1:-0.797280996909;CUX2:-0.828442633748;BPTF:-0.838314724721;GATA4:-0.843601288986;ELF1,2,4:-0.849672329996;PAX6:-0.857834486857;NFE2L1:-0.882576647637;MYFfamily:-0.911995761634;ATF4:-0.915872908765;FOX{F1,F2,J1}:-0.929965779313;STAT2,4,6:-0.951333763112;IRF7:-0.969604906356;FOXP3:-0.971277081219;ZFP161:-0.976687482818;FOXP1:-0.988768634406;FOX{D1,D2}:-0.9911030218;IRF1,2:-0.9962683546;ELK1,4_GABP{A,B1}:-1.01914917802;T:-1.03069711942;BREu{core}:-1.05689508999;PDX1:-1.11381616301;MAFB:-1.11589990084;NRF1:-1.11777604671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11854336393;FOXN1:-1.13912382776;CREB1:-1.14727122929;POU5F1:-1.15589914486;ATF5_CREB3:-1.17973897803;FOX{I1,J2}:-1.18082304304;VSX1,2:-1.1867744281;CDX1,2,4:-1.20128068883;NFIX:-1.22205767616;SREBF1,2:-1.26316140077;FOXD3:-1.27433855325;RFX2..5_RFXANK_RFXAP:-1.36344589014;DMAP1_NCOR{1,2}_SMARC:-1.42352091116;ZBTB16:-1.53171023763;TGIF1:-1.54944332069;AHR_ARNT_ARNT2:-1.67445318792;NKX6-1,2:-1.70836102965;IKZF2:-1.82422795265;HBP1_HMGB_SSRP1_UBTF:-1.83272350626;RBPJ:-1.881991576 | |top_motifs=XCPE1{core}:1.53674754509;ZNF148:1.52209059906;GLI1..3:1.51983168826;HOX{A5,B5}:1.48791360227;TBX4,5:1.40573919308;TFAP2{A,C}:1.36466803148;PPARG:1.28786191579;ZNF384:1.18700600414;SNAI1..3:1.16856693471;TEAD1:1.16557186504;HAND1,2:1.15448351;TP53:1.1316013646;GCM1,2:1.12250261649;RXRA_VDR{dimer}:1.06058676707;NKX2-3_NKX2-5:1.0034362069;ZIC1..3:0.998438497153;ZEB1:0.961685713455;ESR1:0.957588297953;ZNF238:0.925954674568;TFCP2:0.925828218554;PAX5:0.851574327757;MAZ:0.814529889232;RORA:0.787188976705;ZNF423:0.743003101218;ONECUT1,2:0.721788499931;EBF1:0.701473310778;GTF2A1,2:0.666635767025;SP1:0.608880259542;RXR{A,B,G}:0.605552690968;EN1,2:0.593833450697;NR3C1:0.593709407667;UFEwm:0.549230857341;HIC1:0.544437571352;TFAP4:0.527575063696;NKX2-1,4:0.520752052723;POU2F1..3:0.511877881684;KLF4:0.492740341906;PAX1,9:0.450436390731;FOXM1:0.408946932193;TEF:0.406642930457;AIRE:0.392252949831;NR6A1:0.385615347069;HMX1:0.363527533386;TLX1..3_NFIC{dimer}:0.335919203689;TFAP2B:0.324368788639;CDC5L:0.320929022798;TOPORS:0.292452193526;LEF1_TCF7_TCF7L1,2:0.288595127876;FOS_FOS{B,L1}_JUN{B,D}:0.282314957258;NKX2-2,8:0.276818880895;AR:0.267271196223;TBP:0.265294886283;GFI1:0.262371449251;BACH2:0.252530877672;HOX{A4,D4}:0.249659532524;PAX8:0.220199126732;SPZ1:0.199450806085;GTF2I:0.196864592596;SOX17:0.195985755573;ESRRA:0.194919850092;LHX3,4:0.184858865004;NR1H4:0.182232179558;EP300:0.173834555565;MYOD1:0.163692968274;PAX4:0.156448122172;PBX1:0.155443867252;FOXL1:0.144270045797;GZF1:0.140051510076;FOSL2:0.134831605829;MTF1:0.120038802132;ZBTB6:0.116901200603;HLF:0.113088384533;DBP:0.104407668854;STAT5{A,B}:0.0878200468676;XBP1:0.0587518567664;ALX4:0.0563700767953;RREB1:0.052565976189;POU6F1:0.0398163359755;JUN:0.0306027373729;POU3F1..4:0.0271250530946;HOX{A6,A7,B6,B7}:0.0101948048975;IKZF1:-0.0195291727023;E2F1..5:-0.0328691369932;NR5A1,2:-0.0397315541223;bHLH_family:-0.0414607877052;SRF:-0.0429405422841;HNF1A:-0.0599697216976;MED-1{core}:-0.0657970741867;GATA6:-0.093709307229;HOXA9_MEIS1:-0.100279750956;NFY{A,B,C}:-0.111508604428;MTE{core}:-0.121433361237;TFDP1:-0.139156179026;TLX2:-0.145681835194;ADNP_IRX_SIX_ZHX:-0.149016191352;SOX5:-0.151067577175;ARID5B:-0.172984766627;PITX1..3:-0.175325967891;NFE2:-0.184605544475;HIF1A:-0.19878144875;EVI1:-0.199174027431;NHLH1,2:-0.211599363006;NFE2L2:-0.21984856909;SOX{8,9,10}:-0.236287061;POU1F1:-0.24717091501;HNF4A_NR2F1,2:-0.252687587502;FOXQ1:-0.256029836923;PATZ1:-0.270406401887;SOX2:-0.284422414623;GFI1B:-0.29914963702;TAL1_TCF{3,4,12}:-0.315014309544;NFKB1_REL_RELA:-0.325404806901;MYB:-0.331993390376;SMAD1..7,9:-0.339148869133;MYBL2:-0.356127366115;MZF1:-0.399006395902;LMO2:-0.400947676061;NANOG:-0.403656972144;ZNF143:-0.423862039431;ATF2:-0.425053957558;EGR1..3:-0.431045400604;MEF2{A,B,C,D}:-0.442219985187;ATF6:-0.445932260271;FOXA2:-0.455500435254;NKX3-2:-0.464268722372;NFIL3:-0.472179505181;YY1:-0.473658015279;REST:-0.483634888438;CRX:-0.485439916459;ETS1,2:-0.500393964222;PAX3,7:-0.504493607401;FOXO1,3,4:-0.509501882895;RFX1:-0.525833091159;OCT4_SOX2{dimer}:-0.541178202365;PAX2:-0.552008857014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.552725509891;HES1:-0.57326997151;RUNX1..3:-0.576928796521;NANOG{mouse}:-0.581306991857;PRDM1:-0.619724380925;PRRX1,2:-0.658694830473;HSF1,2:-0.658713675096;HMGA1,2:-0.661700517696;SPIB:-0.697216570111;SPI1:-0.715836716724;STAT1,3:-0.767347346259;ALX1:-0.770417732673;CEBPA,B_DDIT3:-0.776309424636;NFATC1..3:-0.777762213459;NKX3-1:-0.797280996909;CUX2:-0.828442633748;BPTF:-0.838314724721;GATA4:-0.843601288986;ELF1,2,4:-0.849672329996;PAX6:-0.857834486857;NFE2L1:-0.882576647637;MYFfamily:-0.911995761634;ATF4:-0.915872908765;FOX{F1,F2,J1}:-0.929965779313;STAT2,4,6:-0.951333763112;IRF7:-0.969604906356;FOXP3:-0.971277081219;ZFP161:-0.976687482818;FOXP1:-0.988768634406;FOX{D1,D2}:-0.9911030218;IRF1,2:-0.9962683546;ELK1,4_GABP{A,B1}:-1.01914917802;T:-1.03069711942;BREu{core}:-1.05689508999;PDX1:-1.11381616301;MAFB:-1.11589990084;NRF1:-1.11777604671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11854336393;FOXN1:-1.13912382776;CREB1:-1.14727122929;POU5F1:-1.15589914486;ATF5_CREB3:-1.17973897803;FOX{I1,J2}:-1.18082304304;VSX1,2:-1.1867744281;CDX1,2,4:-1.20128068883;NFIX:-1.22205767616;SREBF1,2:-1.26316140077;FOXD3:-1.27433855325;RFX2..5_RFXANK_RFXAP:-1.36344589014;DMAP1_NCOR{1,2}_SMARC:-1.42352091116;ZBTB16:-1.53171023763;TGIF1:-1.54944332069;AHR_ARNT_ARNT2:-1.67445318792;NKX6-1,2:-1.70836102965;IKZF2:-1.82422795265;HBP1_HMGB_SSRP1_UBTF:-1.83272350626;RBPJ:-1.881991576 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11694-123A2;search_select_hide=table117:FF:11694-123A2 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Amniotic Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12125 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12125
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12125
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.806 |
| 10 | 10 | 0.781 |
| 100 | 100 | 0.758 |
| 101 | 101 | 0.641 |
| 102 | 102 | 0.75 |
| 103 | 103 | 0.21 |
| 104 | 104 | 0.868 |
| 105 | 105 | 0.252 |
| 106 | 106 | 0.00442 |
| 107 | 107 | 0.0102 |
| 108 | 108 | 0.119 |
| 109 | 109 | 0.0553 |
| 11 | 11 | 0.255 |
| 110 | 110 | 0.138 |
| 111 | 111 | 0.701 |
| 112 | 112 | 0.779 |
| 113 | 113 | 0.00653 |
| 114 | 114 | 0.575 |
| 115 | 115 | 0.567 |
| 116 | 116 | 0.412 |
| 117 | 117 | 0.34 |
| 118 | 118 | 0.433 |
| 119 | 119 | 0.155 |
| 12 | 12 | 0.952 |
| 120 | 120 | 0.191 |
| 121 | 121 | 0.553 |
| 122 | 122 | 0.741 |
| 123 | 123 | 0.664 |
| 124 | 124 | 0.239 |
| 125 | 125 | 0.505 |
| 126 | 126 | 0.407 |
| 127 | 127 | 0.505 |
| 128 | 128 | 0.0847 |
| 129 | 129 | 0.407 |
| 13 | 13 | 0.341 |
| 130 | 130 | 0.631 |
| 131 | 131 | 0.0168 |
| 132 | 132 | 0.177 |
| 133 | 133 | 0.298 |
| 134 | 134 | 0.21 |
| 135 | 135 | 0.496 |
| 136 | 136 | 0.554 |
| 137 | 137 | 0.113 |
| 138 | 138 | 0.616 |
| 139 | 139 | 0.871 |
| 14 | 14 | 0.792 |
| 140 | 140 | 0.282 |
| 141 | 141 | 0.674 |
| 142 | 142 | 0.154 |
| 143 | 143 | 0.828 |
| 144 | 144 | 0.558 |
| 145 | 145 | 0.441 |
| 146 | 146 | 0.113 |
| 147 | 147 | 0.156 |
| 148 | 148 | 0.161 |
| 149 | 149 | 0.0673 |
| 15 | 15 | 0.83 |
| 150 | 150 | 0.221 |
| 151 | 151 | 0.256 |
| 152 | 152 | 0.0272 |
| 153 | 153 | 0.212 |
| 154 | 154 | 0.757 |
| 155 | 155 | 0.467 |
| 156 | 156 | 0.437 |
| 157 | 157 | 0.415 |
| 158 | 158 | 0.723 |
| 159 | 159 | 0.539 |
| 16 | 16 | 0.0677 |
| 160 | 160 | 0.0635 |
| 161 | 161 | 0.307 |
| 162 | 162 | 0.202 |
| 163 | 163 | 0.93 |
| 164 | 164 | 0.708 |
| 165 | 165 | 0.998 |
| 166 | 166 | 0.644 |
| 167 | 167 | 0.273 |
| 168 | 168 | 0.524 |
| 169 | 169 | 0.0468 |
| 17 | 17 | 0.0672 |
| 18 | 18 | 0.147 |
| 19 | 19 | 0.272 |
| 2 | 2 | 0.0957 |
| 20 | 20 | 0.919 |
| 21 | 21 | 0.803 |
| 22 | 22 | 0.159 |
| 23 | 23 | 0.115 |
| 24 | 24 | 0.676 |
| 25 | 25 | 0.96 |
| 26 | 26 | 0.152 |
| 27 | 27 | 0.306 |
| 28 | 28 | 0.915 |
| 29 | 29 | 0.492 |
| 3 | 3 | 0.56 |
| 30 | 30 | 0.22 |
| 31 | 31 | 0.499 |
| 32 | 32 | 1.30338e-6 |
| 33 | 33 | 0.518 |
| 34 | 34 | 0.367 |
| 35 | 35 | 0.359 |
| 36 | 36 | 0.299 |
| 37 | 37 | 0.336 |
| 38 | 38 | 0.436 |
| 39 | 39 | 0.224 |
| 4 | 4 | 0.514 |
| 40 | 40 | 0.0368 |
| 41 | 41 | 0.996 |
| 42 | 42 | 0.83 |
| 43 | 43 | 0.196 |
| 44 | 44 | 0.217 |
| 45 | 45 | 0.138 |
| 46 | 46 | 0.334 |
| 47 | 47 | 0.669 |
| 48 | 48 | 0.201 |
| 49 | 49 | 0.194 |
| 5 | 5 | 0.928 |
| 50 | 50 | 0.404 |
| 51 | 51 | 0.215 |
| 52 | 52 | 0.224 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.226 |
| 55 | 55 | 0.132 |
| 56 | 56 | 0.32 |
| 57 | 57 | 0.459 |
| 58 | 58 | 0.7 |
| 59 | 59 | 0.0605 |
| 6 | 6 | 0.485 |
| 60 | 60 | 0.305 |
| 61 | 61 | 0.709 |
| 62 | 62 | 0.928 |
| 63 | 63 | 0.298 |
| 64 | 64 | 0.139 |
| 65 | 65 | 0.161 |
| 66 | 66 | 0.328 |
| 67 | 67 | 0.429 |
| 68 | 68 | 0.276 |
| 69 | 69 | 0.00233 |
| 7 | 7 | 0.613 |
| 70 | 70 | 0.0572 |
| 71 | 71 | 0.379 |
| 72 | 72 | 0.83 |
| 73 | 73 | 0.0339 |
| 74 | 74 | 0.0741 |
| 75 | 75 | 0.392 |
| 76 | 76 | 0.446 |
| 77 | 77 | 0.0165 |
| 78 | 78 | 0.496 |
| 79 | 79 | 0.0455 |
| 8 | 8 | 0.2 |
| 80 | 80 | 0.909 |
| 81 | 81 | 0.908 |
| 82 | 82 | 0.354 |
| 83 | 83 | 0.756 |
| 84 | 84 | 0.411 |
| 85 | 85 | 0.118 |
| 86 | 86 | 0.657 |
| 87 | 87 | 0.627 |
| 88 | 88 | 0.167 |
| 89 | 89 | 0.129 |
| 9 | 9 | 0.46 |
| 90 | 90 | 0.13 |
| 91 | 91 | 0.0987 |
| 92 | 92 | 0.456 |
| 93 | 93 | 0.5 |
| 94 | 94 | 0.398 |
| 95 | 95 | 0.144 |
| 96 | 96 | 0.918 |
| 97 | 97 | 0.341 |
| 98 | 98 | 0.591 |
| 99 | 99 | 0.00677 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12125
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
