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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000467,UBERON:0001062,UBERON:0003102,UBERON:0002416
|DRA_sample_Accession=CAGE@SAMD00004775
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002620
|accession_numbers=CAGE;DRX008287;DRR009159;DRZ000584;DRZ001969;DRZ011934;DRZ013319
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.48!299.46!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.97!91.94!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.89!76.68!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.85!69.79!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!1.62!40.39!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!176.81!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.83!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.52!86.92!TWIST1;;chr9:132427972..132428056,+!p1@PRRX2!1.51!40.20!PRRX2;;chr7:27224795..27224840,-!p2@HOXA11!1.45!27.36!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.71!HOXA11;;chr2:239756671..239756732,+!p1@TWIST2!1.34!66.07!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.32!33.31!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.43!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.48!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.96!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.20!14.70!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.09!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.08!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.16!13.40!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.21!HOXC5;;chr12:53614115..53614154,-!p1@RARG!1.14!68.68!RARG;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.82!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.84!NPAS1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.77!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.28!IRX2;;chr12:54378923..54378966,+!p1@HOXC10!1.12!12.10!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.54!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.35!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.17!HOXC9;;chr2:19558373..19558392,-!p1@OSR1!1.07!29.96!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.35!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!10.05!RUNX1T1;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.86!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.03!10.42!SHOX2;;chr7:44143925..44143970,+!p1@AEBP1!1.01!208.45!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.42!TCF4;;chr10:28032421..28032494,-!p2@MKX!1.01!9.31!MKX;;chr10:28035133..28035148,-!p3@MKX!1.01!9.12!MKX;;chr1:197886665..197886732,+!p3@LHX9!0.99!8.75!LHX9;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.56!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.97!26.99!AHRR;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.19!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!0.96!8.19!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.82!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.92!46.90!ID4;;chr10:28035112..28035130,-!p5@MKX!0.92!7.26!MKX;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.26!ZIC1;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!8.93!TFAP2C;;chr8:60031934..60031986,-!p6@TOX!0.88!6.51!TOX;;chr12:54380036..54380091,+!p4@HOXC10!0.88!6.51!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.87!37.41!ARID5B;;chr8:60031619..60031676,-!p1@TOX!0.85!13.59!TOX;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.42!FOXD1;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.14!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!0.85!6.14!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.14!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!0.83!10.98!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.83!9.86!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.58!ZNF668;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.40!HOXA9;;chr14:75894714..75894733,+!p1@JDP2!0.80!163.22!JDP2;;chr14:24837368..24837401,+!p1@NFATC4!0.80!13.21!NFATC4;;chr8:67525443..67525459,-!p2@MYBL1!0.79!8.00!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!0.79!5.21!HOXC10;;chr8:60031809..60031835,-!p4@TOX!0.78!6.51!TOX;;chr12:54402790..54402805,+!p2@HOXC8!0.78!5.03!HOXC8;;chr3:147111198..147111225,+!p4@ZIC1!0.78!5.03!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.84!ZIC1;;chr8:60031682..60031710,-!p2@TOX!0.76!8.00!TOX;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.51!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.75!5.96!FOXF1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.65!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.75!4.65!EN1;;chr3:25470156..25470227,+!p2@RARB!0.75!4.65!RARB;;chr4:111558135..111558198,-!p2@PITX2!0.75!4.65!PITX2;;chr15:37392724..37392757,-!p1@MEIS2!0.74!22.71!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.74!20.85!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.73!12.84!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.91!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.73!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.73!5.96!NFIX;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.65!GLIS1;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.15!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.78!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.72!19.73!LRRFIP2;;chr3:147127177..147127194,+!p2@ZIC1!0.72!4.28!ZIC1;;chr10:119302232..119302265,+!p1@EMX2!0.72!4.28!EMX2;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.28!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.71!17.31!SIX1;;chr10:28035155..28035166,-!p8@MKX!0.71!4.09!MKX;;chr1:170632137..170632172,+!p10@PRRX1!0.71!4.09!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.71!4.09!DLX1;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.73!DLX2;;chr16:54320617..54320643,-!p3@IRX3!0.69!5.21!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.84!TBX18;;chr17:46132044..46132080,+!p4@NFE2L1!0.69!3.91!NFE2L1;;chr2:172950227..172950249,+!p2@DLX1!0.69!3.91!DLX1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!88.78!SNAI2;;chr6:85474299..85474324,-!p1@TBX18!0.68!7.26!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.26!NFIX;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.47!BNC1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.67!3.72!RUNX1T1;;chr5:139487608..139487663,+!p3@PURA!0.66!8.38!PURA;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.66!3.54!RUNX1T1;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.54!FOXL1;;chr10:28034395..28034404,-!p9@MKX!0.66!3.54!MKX;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.54!HEYL;;chr2:119604456..119604501,-!p2@EN1!0.66!3.54!EN1;;chr3:147110055..147110129,-!p1@ZIC4!0.66!3.54!ZIC4;;chr15:37392616..37392638,-!p2@MEIS2!0.65!12.28!MEIS2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.58!ZBTB38;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr17:46806067..46806097,-!p1@HOXB13!0.64!3.35!HOXB13;;chr19:13135386..13135435,+!p4@NFIX!0.64!3.35!NFIX;;chr11:46299443..46299459,+!p4@CREB3L1!0.64!3.35!CREB3L1;;chr10:63809106..63809127,+!p1@ARID5B!0.62!50.62!ARID5B;;chr3:178789522..178789564,-!p2@ZMAT3!0.62!27.92!ZMAT3;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.16!ZIC1;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.16!HOXC9;;chr7:27239703..27239715,-!p1@HOXA13!0.62!3.16!HOXA13;;chr8:23564065..23564087,-!p1@NKX2-6!0.62!3.16!NKX2-6;;chr4:4861385..4861398,+!p1@MSX1!0.61!10.42!MSX1;;chr15:37390850..37390909,-!p3@MEIS2!0.61!6.70!MEIS2;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.43!HIF1A;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.65!IRX5;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.91!FOXD1;;chr15:37392593..37392607,-!p13@MEIS2!0.60!3.72!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.60!2.98!ARNT2;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.26!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.59!4.28!MEIS2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.58!34.62!GLIS2;;chr15:57511589..57511608,+!p4@TCF12!0.58!2.79!TCF12;;chr5:139492456..139492489,+!p7@PURA!0.58!2.79!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.79!IRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.58!2.79!HOXA9;;chr8:60031840..60031869,-!p5@TOX!0.58!2.79!TOX;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.79!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.79!HOXC5;;chr2:172967242..172967265,-!p2@DLX2!0.58!2.79!DLX2;;chr2:172967323..172967336,-!p4@DLX2!0.58!2.79!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.57!338.55!EPAS1;;chr12:80085061..80085119,-!p6@PAWR!0.57!4.84!PAWR;;chr19:31840130..31840160,-!p2@TSHZ3!0.57!4.65!TSHZ3;;chr8:60031762..60031803,-!p3@TOX!0.57!4.28!TOX;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.28!SATB2;;chr16:54320101..54320125,-!p4@IRX3!0.56!4.09!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.72!TEAD1;;chr15:37392534..37392562,-!p10@MEIS2!0.56!2.98!MEIS2;;chr12:53625846..53625861,-!p6@RARG!0.56!2.61!RARG;;chr5:142780189..142780223,-!p6@NR3C1!0.56!2.61!NR3C1;;chr1:170632907..170632916,+!p22@PRRX1!0.56!2.61!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.56!2.61!FOXS1;;chr12:53625966..53626012,-!p2@RARG!0.55!8.00!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.33!SATB2;;chr5:43067636..43067674,+!p6@ZNF131!0.55!3.72!ZNF131;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.98!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.54!36.11!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!0.54!18.98!GATA2;;chr10:63809077..63809089,+!p5@ARID5B!0.53!6.14!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.53!5.77!VDR;;chr16:54320646..54320672,-!p2@IRX3!0.53!4.09!IRX3;;chr17:46682321..46682362,-!p1@HOXB6!0.53!2.42!HOXB6;;chr5:2751785..2751808,-!p2@IRX2!0.53!2.42!IRX2;;chr1:119530636..119530653,-!p2@TBX15!0.53!2.42!TBX15;;chr19:33865009..33865090,+!p3@CEBPG!0.52!3.35!CEBPG;;chr19:13106214..13106382,+!p1@NFIX!0.51!67.37!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.51!16.01!CREB3;;chr3:114343768..114343822,-!p1@ZBTB20!0.51!12.47!ZBTB20;;chr19:47922750..47922795,-!p1@MEIS3!0.51!4.09!MEIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.51!2.79!FOXD1;;chr5:3595934..3595957,+!p2@IRX1!0.51!2.23!IRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.51!2.23!RUNX1T1;;chr2:102091144..102091183,-!p2@RFX8!0.51!2.23!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.51!2.23!HOXD3;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.23!MEIS1;;chr11:44331576..44331650,-!p1@ALX4!0.51!2.23!ALX4;;chr19:13135582..13135600,+!p3@NFIX!0.51!2.23!NFIX;;chr19:9609272..9609297,-!p1@ZNF560!0.51!2.23!ZNF560;;chr2:71127699..71127744,+!p1@VAX2!0.50!5.21!VAX2;;chr11:707063..707088,-!p4@DEAF1!0.50!2.98!DEAF1;;chr15: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586!0.15!0.74!ZNF586;;chr16:30798476..30798483,-!p2@ZNF629!0.15!0.74!ZNF629;;chr7:1577111..1577132,+!p4@MAFK!0.15!0.56!MAFK;;chr9:77112244..77112262,+!p1@RORB!0.15!0.56!RORB;;chr22:29196433..29196445,-!p4@XBP1!0.15!0.56!XBP1;;chr12:51157837..51157892,+!p1@ATF1!0.14!26.43!ATF1;;chr14:64971461..64971542,+!p1@ZBTB1!0.14!24.75!ZBTB1;;chr1:150849047..150849082,-!p1@ARNT!0.14!18.80!ARNT;;chr20:39946279..39946356,-!p1@ZHX3!0.14!18.61!ZHX3;;chr6:33285505..33285529,-!p1@ZBTB22!0.14!7.82!ZBTB22;;chr19:52643169..52643199,-!p1@ZNF616!0.14!6.70!ZNF616;;chr8:124286775..124286860,-!p2@ZHX1!0.14!4.65!ZHX1;;chrX:48900899..48900917,-!p2@TFE3!0.14!4.65!TFE3;;chr9:35732561..35732587,+!p3@CREB3!0.14!4.47!CREB3;;chr17:38498402..38498445,+!p3@RARA!0.14!3.72!RARA;;chr1:151043216..151043256,+!p1@GABPB2!0.14!3.54!GABPB2;;chr6:134274295..134274308,+!p2@TBPL1!0.14!3.35!TBPL1;;chr6:43337255..43337329,-!p2@ZNF318!0.14!2.79!ZNF318;;chr8:116681409..116681431,-!p2@TRPS1!0.14!2.61!TRPS1;;chr15:31618903..31618962,+!p3@KLF13!0.14!2.61!KLF13;;chr19:36705547..36705597,-!p1@ZNF565!0.14!2.42!ZNF565;;chr18:51750928..51750942,-!p4@MBD2!0.14!2.23!MBD2;;chr22:46546406..46546440,+!p1@PPARA!0.14!2.23!PPARA;;chr19:56879472..56879529,+!p2@ZNF542!0.14!1.86!ZNF542;;chr1:151043266..151043295,+!p2@GABPB2!0.14!1.86!GABPB2;;chr7:86781778..86781789,+!p4@DMTF1!0.14!1.68!DMTF1;;chr4:146402843..146402864,+!p3@SMAD1!0.14!1.68!SMAD1;;chr14:100705587..100705600,+!p5@YY1!0.14!1.49!YY1;;chr14:24584138..24584192,-!p2@NRL!0.14!1.12!NRL;;chr20:49547554..49547563,-!p6@ADNP!0.14!1.12!ADNP;;chr9:130952713..130952727,-!p3@CIZ1!0.14!1.12!CIZ1;;chrX:106960249..106960260,-!p5@TSC22D3!0.14!1.12!TSC22D3;;chr7:27788205..27788255,+!p2@TAX1BP1!0.14!1.12!TAX1BP1;;chr16:30582888..30582923,-!p3@ZNF688!0.14!1.12!ZNF688;;chr15:66994615..66994630,+!p3@SMAD6!0.14!0.93!SMAD6;;chr17:42297226..42297246,-!p14@UBTF!0.14!0.93!UBTF;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.14!0.93!ZNF497;;chr12:49445907..49445923,-!p2@MLL2!0.14!0.93!MLL2;;chr14:62193465..62193490,+!p7@HIF1A!0.14!0.93!HIF1A;;chr6:31515311..31515330,+!p3@NFKBIL1!0.14!0.93!NFKBIL1;;chr8:116681247..116681261,-!p8@TRPS1!0.14!0.74!TRPS1;;chr22:41697484..41697496,+!p3@ZC3H7B!0.14!0.74!ZC3H7B;;chr2:148779187..148779222,+!p5@MBD5!0.14!0.74!MBD5;;chr3:44626359..44626387,+!p4@ZNF197!0.14!0.74!ZNF197;;chr12:80084137..80084165,-!p10@PAWR!0.14!0.74!PAWR;;chr11:47279248..47279264,+!p3@NR1H3!0.14!0.56!NR1H3;;chr12:80083689..80083706,-!p16@PAWR!0.14!0.56!PAWR;;chr13:73636516..73636532,+!p3@KLF5!0.14!0.56!KLF5;;chr7:74072282..74072287,+!p9@GTF2I!0.14!0.56!GTF2I;;chr22:21355896..21355920,-!p4@THAP7!0.14!0.56!THAP7;;chr2:145274998..145275012,-!p13@ZEB2!0.14!0.56!ZEB2;;chr3:37217544..37217586,-!p6@LRRFIP2!0.14!0.56!LRRFIP2;;chr22:19748231..19748317,+!p1@TBX1!0.14!0.37!TBX1;;chr22:46567171..46567203,+!p6@PPARA!0.14!0.37!PPARA;;chr2:102091478..102091490,-!p3@RFX8!0.14!0.37!RFX8;;chr2:119605233..119605245,-!p8@EN1!0.14!0.37!EN1;;chr2:145147310..145147339,-!p20@ZEB2!0.14!0.37!ZEB2;;chr2:145275982..145276003,-!p7@ZEB2!0.14!0.37!ZEB2;;chr2:145277792..145277808,-!p15@ZEB2!0.14!0.37!ZEB2;;chr2:176969124..176969155,+!p5@HOXD11!0.14!0.37!HOXD11;;chr2:176969179..176969226,+!p2@HOXD11!0.14!0.37!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.14!0.37!HOXD3;;chr2:177001336..177001357,+!p2@HOXD3!0.14!0.37!HOXD3;;chr2:177001366..177001379,+!p4@HOXD3!0.14!0.37!HOXD3;;chr2:177053386..177053402,+!p1@HOXD1!0.14!0.37!HOXD1;;chr2:191885737..191885750,-!p4@STAT1!0.14!0.37!STAT1;;
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.48!299.46!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.97!91.94!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.89!76.68!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.85!69.79!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!1.62!40.39!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!176.81!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.83!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.52!86.92!TWIST1;;chr9:132427972..132428056,+!p1@PRRX2!1.51!40.20!PRRX2;;chr7:27224795..27224840,-!p2@HOXA11!1.45!27.36!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.71!HOXA11;;chr2:239756671..239756732,+!p1@TWIST2!1.34!66.07!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.32!33.31!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.43!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.48!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.96!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.20!14.70!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.09!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.08!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.16!13.40!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.21!HOXC5;;chr12:53614115..53614154,-!p1@RARG!1.14!68.68!RARG;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.82!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.84!NPAS1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.77!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.28!IRX2;;chr12:54378923..54378966,+!p1@HOXC10!1.12!12.10!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.54!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.35!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.17!HOXC9;;chr2:19558373..19558392,-!p1@OSR1!1.07!29.96!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.35!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!10.05!RUNX1T1;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.86!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.03!10.42!SHOX2;;chr7:44143925..44143970,+!p1@AEBP1!1.01!208.45!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.42!TCF4;;chr10:28032421..28032494,-!p2@MKX!1.01!9.31!MKX;;chr10:28035133..28035148,-!p3@MKX!1.01!9.12!MKX;;chr1:197886665..197886732,+!p3@LHX9!0.99!8.75!LHX9;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.56!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.97!26.99!AHRR;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.19!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!0.96!8.19!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.82!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.92!46.90!ID4;;chr10:28035112..28035130,-!p5@MKX!0.92!7.26!MKX;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.26!ZIC1;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!8.93!TFAP2C;;chr8:60031934..60031986,-!p6@TOX!0.88!6.51!TOX;;chr12:54380036..54380091,+!p4@HOXC10!0.88!6.51!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.87!37.41!ARID5B;;chr8:60031619..60031676,-!p1@TOX!0.85!13.59!TOX;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.42!FOXD1;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.14!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!0.85!6.14!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.14!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!0.83!10.98!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.83!9.86!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.58!ZNF668;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.40!HOXA9;;chr14:75894714..75894733,+!p1@JDP2!0.80!163.22!JDP2;;chr14:24837368..24837401,+!p1@NFATC4!0.80!13.21!NFATC4;;chr8:67525443..67525459,-!p2@MYBL1!0.79!8.00!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!0.79!5.21!HOXC10;;chr8:60031809..60031835,-!p4@TOX!0.78!6.51!TOX;;chr12:54402790..54402805,+!p2@HOXC8!0.78!5.03!HOXC8;;chr3:147111198..147111225,+!p4@ZIC1!0.78!5.03!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.84!ZIC1;;chr8:60031682..60031710,-!p2@TOX!0.76!8.00!TOX;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.51!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.75!5.96!FOXF1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.65!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.75!4.65!EN1;;chr3:25470156..25470227,+!p2@RARB!0.75!4.65!RARB;;chr4:111558135..111558198,-!p2@PITX2!0.75!4.65!PITX2;;chr15:37392724..37392757,-!p1@MEIS2!0.74!22.71!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.74!20.85!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.73!12.84!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.91!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.73!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.73!5.96!NFIX;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.65!GLIS1;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.15!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.78!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.72!19.73!LRRFIP2;;chr3:147127177..147127194,+!p2@ZIC1!0.72!4.28!ZIC1;;chr10:119302232..119302265,+!p1@EMX2!0.72!4.28!EMX2;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.28!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.71!17.31!SIX1;;chr10:28035155..28035166,-!p8@MKX!0.71!4.09!MKX;;chr1:170632137..170632172,+!p10@PRRX1!0.71!4.09!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.71!4.09!DLX1;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.73!DLX2;;chr16:54320617..54320643,-!p3@IRX3!0.69!5.21!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.84!TBX18;;chr17:46132044..46132080,+!p4@NFE2L1!0.69!3.91!NFE2L1;;chr2:172950227..172950249,+!p2@DLX1!0.69!3.91!DLX1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!88.78!SNAI2;;chr6:85474299..85474324,-!p1@TBX18!0.68!7.26!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.26!NFIX;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.47!BNC1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.67!3.72!RUNX1T1;;chr5:139487608..139487663,+!p3@PURA!0.66!8.38!PURA;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.66!3.54!RUNX1T1;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.54!FOXL1;;chr10:28034395..28034404,-!p9@MKX!0.66!3.54!MKX;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.54!HEYL;;chr2:119604456..119604501,-!p2@EN1!0.66!3.54!EN1;;chr3:147110055..147110129,-!p1@ZIC4!0.66!3.54!ZIC4;;chr15:37392616..37392638,-!p2@MEIS2!0.65!12.28!MEIS2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.58!ZBTB38;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr17:46806067..46806097,-!p1@HOXB13!0.64!3.35!HOXB13;;chr19:13135386..13135435,+!p4@NFIX!0.64!3.35!NFIX;;chr11:46299443..46299459,+!p4@CREB3L1!0.64!3.35!CREB3L1;;chr10:63809106..63809127,+!p1@ARID5B!0.62!50.62!ARID5B;;chr3:178789522..178789564,-!p2@ZMAT3!0.62!27.92!ZMAT3;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.16!ZIC1;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.16!HOXC9;;chr7:27239703..27239715,-!p1@HOXA13!0.62!3.16!HOXA13;;chr8:23564065..23564087,-!p1@NKX2-6!0.62!3.16!NKX2-6;;chr4:4861385..4861398,+!p1@MSX1!0.61!10.42!MSX1;;chr15:37390850..37390909,-!p3@MEIS2!0.61!6.70!MEIS2;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.43!HIF1A;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.65!IRX5;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.91!FOXD1;;chr15:37392593..37392607,-!p13@MEIS2!0.60!3.72!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.60!2.98!ARNT2;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.26!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.59!4.28!MEIS2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.58!34.62!GLIS2;;chr15:57511589..57511608,+!p4@TCF12!0.58!2.79!TCF12;;chr5:139492456..139492489,+!p7@PURA!0.58!2.79!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.79!IRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.58!2.79!HOXA9;;chr8:60031840..60031869,-!p5@TOX!0.58!2.79!TOX;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.79!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.79!HOXC5;;chr2:172967242..172967265,-!p2@DLX2!0.58!2.79!DLX2;;chr2:172967323..172967336,-!p4@DLX2!0.58!2.79!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.57!338.55!EPAS1;;chr12:80085061..80085119,-!p6@PAWR!0.57!4.84!PAWR;;chr19:31840130..31840160,-!p2@TSHZ3!0.57!4.65!TSHZ3;;chr8:60031762..60031803,-!p3@TOX!0.57!4.28!TOX;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.28!SATB2;;chr16:54320101..54320125,-!p4@IRX3!0.56!4.09!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.72!TEAD1;;chr15:37392534..37392562,-!p10@MEIS2!0.56!2.98!MEIS2;;chr12:53625846..53625861,-!p6@RARG!0.56!2.61!RARG;;chr5:142780189..142780223,-!p6@NR3C1!0.56!2.61!NR3C1;;chr1:170632907..170632916,+!p22@PRRX1!0.56!2.61!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.56!2.61!FOXS1;;chr12:53625966..53626012,-!p2@RARG!0.55!8.00!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.33!SATB2;;chr5:43067636..43067674,+!p6@ZNF131!0.55!3.72!ZNF131;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.98!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.54!36.11!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!0.54!18.98!GATA2;;chr10:63809077..63809089,+!p5@ARID5B!0.53!6.14!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.53!5.77!VDR;;chr16:54320646..54320672,-!p2@IRX3!0.53!4.09!IRX3;;chr17:46682321..46682362,-!p1@HOXB6!0.53!2.42!HOXB6;;chr5:2751785..2751808,-!p2@IRX2!0.53!2.42!IRX2;;chr1:119530636..119530653,-!p2@TBX15!0.53!2.42!TBX15;;chr19:33865009..33865090,+!p3@CEBPG!0.52!3.35!CEBPG;;chr19:13106214..13106382,+!p1@NFIX!0.51!67.37!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.51!16.01!CREB3;;chr3:114343768..114343822,-!p1@ZBTB20!0.51!12.47!ZBTB20;;chr19:47922750..47922795,-!p1@MEIS3!0.51!4.09!MEIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.51!2.79!FOXD1;;chr5:3595934..3595957,+!p2@IRX1!0.51!2.23!IRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.51!2.23!RUNX1T1;;chr2:102091144..102091183,-!p2@RFX8!0.51!2.23!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.51!2.23!HOXD3;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.23!MEIS1;;chr11:44331576..44331650,-!p1@ALX4!0.51!2.23!ALX4;;chr19:13135582..13135600,+!p3@NFIX!0.51!2.23!NFIX;;chr19:9609272..9609297,-!p1@ZNF560!0.51!2.23!ZNF560;;chr2:71127699..71127744,+!p1@VAX2!0.50!5.21!VAX2;;chr11:707063..707088,-!p4@DEAF1!0.50!2.98!DEAF1;;chr15: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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1.CNhs11351.11553-120C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1.CNhs11351.11553-120C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1.CNhs11351.11553-120C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1.CNhs11351.11553-120C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1.CNhs11351.11553-120C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11553-120C5
|id=FF:11553-120C5
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000250
|is_a=EFO:0002091;;FF:0000250
|is_obsolete=
|library_id=CNhs11351
|library_id_phase_based=2:CNhs11351
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11553
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11553
|name=Fibroblast - skin normal, donor1
|name=Fibroblast - skin normal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11351,LSID769,release014,COMPLETED
|profile_hcage=CNhs11351,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
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|rna_catalog_number=custom
Line 57: Line 79:
|rna_weight_ug=132.7752
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|sample_age=25 year old
|sample_age=25 year old
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 77: Line 100:
|sample_tissue=skin
|sample_tissue=skin
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|top_motifs=GZF1:1.72731329843;ZNF238:1.69779817184;XBP1:1.52173227758;NR3C1:1.51822045134;ESR1:1.50978060698;NKX3-2:1.36523592818;NKX3-1:1.35982519421;TP53:1.35322484255;HAND1,2:1.30159537643;HMGA1,2:1.30073687297;TEAD1:1.26362484381;FOXL1:1.25662518092;GTF2A1,2:1.2016625179;NKX2-2,8:1.15111139135;RXR{A,B,G}:1.14882578611;TFAP4:1.11096092924;TAL1_TCF{3,4,12}:1.10947651161;KLF4:1.08558616876;HES1:1.05788917799;MYBL2:1.05301805467;NFIX:1.04262721766;UFEwm:1.02044062231;SRF:1.00447414234;TFCP2:0.996850172426;ATF6:0.991935065218;ALX4:0.9806648371;HBP1_HMGB_SSRP1_UBTF:0.95733334614;GFI1B:0.936242231406;SOX17:0.902004933487;EBF1:0.890327159403;GATA4:0.88308670832;PDX1:0.86897736396;IKZF1:0.864457278846;NFE2L1:0.808333311189;MAZ:0.805526104995;AIRE:0.804524782974;FOXD3:0.80000773078;SMAD1..7,9:0.799593602427;NFATC1..3:0.784369760964;HSF1,2:0.781797095782;HOX{A5,B5}:0.780027950245;GTF2I:0.774473175459;GCM1,2:0.746581259098;HMX1:0.723432580694;PRDM1:0.711117479619;MAFB:0.700555022902;GLI1..3:0.674874835052;TFAP2{A,C}:0.670130207571;TBX4,5:0.655754269781;ZNF384:0.655064584441;LHX3,4:0.648551059993;RXRA_VDR{dimer}:0.640289025934;TLX1..3_NFIC{dimer}:0.627521637472;TEF:0.613206535099;NANOG{mouse}:0.61247933079;MZF1:0.603090290715;NKX2-3_NKX2-5:0.588556732432;MTE{core}:0.572313729286;HIF1A:0.562492855506;HOX{A4,D4}:0.557253423937;PRRX1,2:0.526337387718;NR6A1:0.499061250565;EP300:0.493121080419;ZNF148:0.459037874562;EN1,2:0.443209428493;HLF:0.434288299455;EVI1:0.421119334888;SPZ1:0.409693150566;HOX{A6,A7,B6,B7}:0.406709970942;PPARG:0.394690456202;PAX5:0.389894643671;ZIC1..3:0.383456872693;GFI1:0.374942875398;MTF1:0.354970337876;CDC5L:0.353354726224;TFAP2B:0.339791045409;NFE2L2:0.336439617419;XCPE1{core}:0.334248800446;YY1:0.333141129239;PATZ1:0.28705632381;HIC1:0.240302607392;RREB1:0.236850433455;TBP:0.234402462843;FOXO1,3,4:0.227778141547;MEF2{A,B,C,D}:0.226934798356;ZNF423:0.199410871699;AHR_ARNT_ARNT2:0.192583727989;BACH2:0.182837997594;NHLH1,2:0.182818204003;TFDP1:0.174226439035;ADNP_IRX_SIX_ZHX:0.171074288271;NR1H4:0.170084174868;LEF1_TCF7_TCF7L1,2:0.140470869632;CEBPA,B_DDIT3:0.126397960253;MYFfamily:0.112520508744;CRX:0.111128347125;STAT5{A,B}:0.106932564145;ELK1,4_GABP{A,B1}:0.10094199862;PAX8:0.0613947315898;ZBTB6:0.0534827721736;POU1F1:0.0422950579113;EGR1..3:0.0255692501908;NKX2-1,4:0.0218692186758;NFE2:0.0214496409683;POU5F1:0.0117027551189;T:-0.0193286163477;PAX1,9:-0.0206975635621;IRF1,2:-0.0306675182101;TOPORS:-0.0387327416439;FOXA2:-0.0554630402226;DMAP1_NCOR{1,2}_SMARC:-0.0668790301024;HNF1A:-0.0673934507897;NRF1:-0.0810256907677;SP1:-0.0837303590386;RUNX1..3:-0.086682841047;RFX1:-0.105522230447;DBP:-0.115662822227;STAT1,3:-0.121091200041;FOS_FOS{B,L1}_JUN{B,D}:-0.125492885403;ONECUT1,2:-0.152144553345;ARID5B:-0.1830006699;ZNF143:-0.199391298539;SOX5:-0.205552123286;POU3F1..4:-0.209084313428;NKX6-1,2:-0.226655303317;MYB:-0.232914330586;STAT2,4,6:-0.233894765049;MED-1{core}:-0.245314016382;REST:-0.264986213089;FOSL2:-0.267497222099;ZFP161:-0.292404528584;PAX3,7:-0.305402517217;POU6F1:-0.307686958279;TGIF1:-0.333355168541;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.334202886865;bHLH_family:-0.352805814071;RBPJ:-0.366382080641;HNF4A_NR2F1,2:-0.373239592021;ALX1:-0.377530242004;FOXM1:-0.382842918413;NFKB1_REL_RELA:-0.401477551935;FOX{D1,D2}:-0.420920457536;SPI1:-0.440075269726;ETS1,2:-0.440552698934;ELF1,2,4:-0.441019381309;JUN:-0.489531514277;CREB1:-0.493471761592;NFIL3:-0.500346144089;PAX6:-0.505570732998;SREBF1,2:-0.527116252176;BPTF:-0.532600749165;ATF4:-0.544979641726;ATF2:-0.547866145417;SPIB:-0.56127952985;PAX2:-0.577643191106;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.58728636954;FOX{I1,J2}:-0.589603118557;CUX2:-0.598508941881;FOXP3:-0.603869246726;IRF7:-0.606753889749;RFX2..5_RFXANK_RFXAP:-0.624006178136;SOX2:-0.624757237333;AR:-0.64051837017;FOXN1:-0.657299565583;ATF5_CREB3:-0.662820983489;E2F1..5:-0.664480743353;SNAI1..3:-0.671688766106;FOXQ1:-0.681559552201;PAX4:-0.688248091306;ZEB1:-0.737850098801;OCT4_SOX2{dimer}:-0.811665513314;ZBTB16:-0.849297401956;BREu{core}:-0.853359026085;TLX2:-0.87734619452;ESRRA:-0.887155527937;NR5A1,2:-0.909807485109;PITX1..3:-0.921988830283;NFY{A,B,C}:-0.925165097024;FOX{F1,F2,J1}:-0.95651917376;SOX{8,9,10}:-0.972616299805;FOXP1:-0.980321539752;LMO2:-0.984867113065;NANOG:-0.996789689064;VSX1,2:-1.0062009977;GATA6:-1.01183379133;HOXA9_MEIS1:-1.04368351566;PBX1:-1.05873059243;RORA:-1.0593271516;CDX1,2,4:-1.07129980382;POU2F1..3:-1.16716450481;MYOD1:-1.22897031064;IKZF2:-1.30267950024
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11553-120C5;search_select_hide=table117:FF:11553-120C5
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Fibroblast - skin normal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11351
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age25 year old
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004775
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11351 CAGE DRX008287 DRR009159
Accession ID Hg19

Library idBAMCTSS
CNhs11351 DRZ000584 DRZ001969
Accession ID Hg38

Library idBAMCTSS
CNhs11351 DRZ011934 DRZ013319
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.114
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.638
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0907
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.102
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0741
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.344
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.104
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.06
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.427
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.0741
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.429
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.484
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.242
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.164
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0741
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.396
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.326
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.705
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.274
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.638
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.484
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11351

Jaspar motifP-value
MA0002.20.869
MA0003.10.359
MA0004.10.00671
MA0006.10.103
MA0007.10.715
MA0009.10.215
MA0014.10.459
MA0017.10.494
MA0018.21.17856e-6
MA0019.10.554
MA0024.11.16242e-7
MA0025.10.0335
MA0027.10.529
MA0028.10.249
MA0029.10.686
MA0030.10.117
MA0031.10.207
MA0035.20.00657
MA0038.10.0426
MA0039.20.172
MA0040.10.276
MA0041.10.495
MA0042.10.602
MA0043.11.03909e-5
MA0046.10.674
MA0047.20.643
MA0048.10.187
MA0050.10.18
MA0051.10.5
MA0052.10.787
MA0055.10.952
MA0057.10.113
MA0058.10.00161
MA0059.10.118
MA0060.17.8537e-9
MA0061.10.0547
MA0062.22.00716e-4
MA0065.20.219
MA0066.10.34
MA0067.10.00191
MA0068.10.976
MA0069.10.0222
MA0070.10.566
MA0071.10.513
MA0072.10.598
MA0073.10.992
MA0074.10.913
MA0076.10.192
MA0077.10.268
MA0078.10.685
MA0079.20.994
MA0080.22.51023e-7
MA0081.10.0173
MA0083.10.0262
MA0084.10.443
MA0087.10.867
MA0088.10.898
MA0090.15.67698e-6
MA0091.10.151
MA0092.10.104
MA0093.10.0158
MA0099.20.293
MA0100.10.237
MA0101.14.01735e-4
MA0102.20.0692
MA0103.12.20978e-4
MA0104.28.12367e-4
MA0105.10.192
MA0106.10.0158
MA0107.10.00226
MA0108.20.0938
MA0111.10.099
MA0112.20.0315
MA0113.10.93
MA0114.10.414
MA0115.10.0768
MA0116.10.893
MA0117.10.305
MA0119.11
MA0122.10.686
MA0124.10.531
MA0125.10.322
MA0131.10.393
MA0135.10.828
MA0136.11.035e-8
MA0137.20.528
MA0138.20.347
MA0139.10.612
MA0140.10.0657
MA0141.10.395
MA0142.10.0281
MA0143.10.998
MA0144.10.898
MA0145.10.309
MA0146.10.633
MA0147.10.00536
MA0148.10.641
MA0149.10.321
MA0150.10.0573
MA0152.10.0349
MA0153.10.334
MA0154.10.505
MA0155.10.414
MA0156.11.21863e-4
MA0157.10.622
MA0159.10.83
MA0160.10.107
MA0162.10.0856
MA0163.10.197
MA0164.10.613
MA0258.10.969
MA0259.10.143



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11351

Novel motifP-value
10.385
100.472
1000.581
1010.594
1020.0342
1030.655
1040.719
1050.615
1060.935
1070.563
1080.96
1090.474
110.74
1100.891
1110.535
1120.697
1137.25794e-4
1140.569
1150.315
1160.109
1170.268
1180.618
1190.523
120.586
1200.896
1210.712
1220.651
1236.87201e-5
1240.629
1250.826
1260.883
1270.74
1280.998
1290.431
130.361
1300.113
1310.786
1320.222
1330.537
1340.513
1350.135
1360.0712
1370.406
1380.409
1390.743
140.37
1400.35
1410.193
1420.81
1430.854
1440.754
1450.951
1460.984
1470.0511
1480.514
1490.00511
150.366
1500.341
1510.698
1520.0568
1530.2
1540.882
1550.00862
1560.795
1570.236
1580.00668
1590.707
160.105
1600.579
1610.34
1620.775
1630.804
1640.687
1650.532
1660.0488
1670.279
1680.301
1690.0551
170.905
180.144
190.0118
20.215
200.226
210.0464
220.261
230.302
240.358
250.3
260.515
270.595
280.283
290.716
30.802
300.131
310.776
322.26669e-11
330.433
340.834
350.556
360.0489
370.213
380.492
390.167
40.663
400.235
410.669
420.387
430.734
440.701
450.677
460.897
470.583
480.729
490.325
50.488
500.432
510.667
520.88
530.177
540.796
550.204
560.791
570.837
580.25
590.158
60.986
600.629
610.26
620.649
630.724
640.538
650.8
660.337
670.937
680.744
690.989
70.169
700.674
710.794
720.82
730.0577
740.48
750.319
760.44
770.0575
780.0926
790.0727
80.77
800.955
810.749
820.122
830.108
840.207
850.86
860.518
870.378
880.636
890.113
90.498
900.245
910.713
920.231
930.701
940.789
950.905
960.879
970.592
980.425
990.0107



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11351


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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