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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000995,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005329
|accession_numbers=CAGE;DRX007917;DRR008789;DRZ000214;DRZ001599;DRZ011564;DRZ012949
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000
|ancestors_in_cell_lineage_facet=CL:0000000
|ancestors_in_disease_facet=DOID:4,DOID:14566,DOID:0060072,DOID:0060084,DOID:127
|ancestors_in_disease_facet=DOID:4,DOID:14566,DOID:0060072,DOID:0060084,DOID:127
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102694
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.20!158.72!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.73!89.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.56!35.27!HOXA11;;chr9:77112244..77112262,+!p1@RORB!1.52!36.25!RORB;;chr7:27224795..27224840,-!p2@HOXA11!1.49!29.72!HOXA11;;chr19:13134772..13134822,+!p2@NFIX!1.48!42.46!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.41!ZBED1;;chr4:174450089..174450153,-!p2@HAND2!1.43!25.80!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.35!95.04!DRAP1;;chr2:176973498..176973524,+!p1@HOXD10!1.35!21.23!HOXD10;;chr11:46299539..46299620,+!p2@CREB3L1!1.32!33.31!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!1.32!25.15!DRAP1;;chr3:141150883..141150961,+!p6@ZBTB38!1.31!19.27!ZBTB38;;chr2:19558373..19558392,-!p1@OSR1!1.29!50.29!OSR1;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.56!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!1.23!16.00!EMX2;;chr4:174451350..174451363,-!p3@HAND2!1.23!16.00!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.22!463.75!HMGA1;;chr3:141151009..141151033,+!p10@ZBTB38!1.19!14.37!ZBTB38;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.02!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.40!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.11!36.90!TBX2;;chr11:32457075..32457095,-!p1@WT1!1.09!11.43!WT1;;chr2:239756671..239756732,+!p1@TWIST2!1.06!34.29!TWIST2;;chr19:13135582..13135600,+!p3@NFIX!1.05!10.12!NFIX;;chr15:96876966..96877017,+!p12@NR2F2!1.02!13.72!NR2F2;;chr3:69811882..69811898,+!p6@MITF!1.02!9.47!MITF;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.72!SATB2;;chr3:138665937..138665968,-!p1@FOXL2!1.01!9.14!FOXL2;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.60!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!1.00!12.41!DRAP1;;chr2:176981499..176981522,+!p2@HOXD10!0.99!8.82!HOXD10;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.43!GATA6;;chr10:119302232..119302265,+!p1@EMX2!0.96!8.16!EMX2;;chr6:34205372..34205412,+!p5@HMGA1!0.95!41.15!HMGA1;;chr19:13136241..13136258,+!p7@NFIX!0.95!10.78!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.84!SALL1;;chr6:28321971..28321995,-!p1@ZNF323!0.95!7.84!ZNF323;;chr11:65687158..65687216,+!p4@DRAP1!0.94!45.72!DRAP1;;chr17:7492684..7492778,-!p2@SOX15!0.94!16.66!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.78!NR2F2;;chr3:138665969..138665993,-!p2@FOXL2!0.93!7.51!FOXL2;;chr11:8102846..8102892,+!p1@TUB!0.92!10.45!TUB;;chr19:13134457..13134462,+!p5@NFIX!0.90!12.74!NFIX;;chr10:119302645..119302712,+!p3@EMX2!0.90!6.86!EMX2;;chr7:27239703..27239715,-!p1@HOXA13!0.90!6.86!HOXA13;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.62!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.87!8.82!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.85!10.78!TWIST2;;chr5:72743793..72743855,-!p4@FOXD1!0.85!7.18!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!71.20!MLLT11;;chr9:35732647..35732678,+!p2@CREB3!0.82!33.64!CREB3;;chr1:170632959..170632987,+!p4@PRRX1!0.82!6.21!PRRX1;;chr7:27196267..27196311,-!p1@HOXA7!0.82!5.55!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.55!HOXA10;;chr6:19837592..19837621,+!p1@ID4!0.80!35.27!ID4;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.04!FOXC2;;chrX:66763856..66763896,+!p1@AR!0.80!7.84!AR;;chr17:59477275..59477286,+!p3@TBX2!0.80!7.18!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.79!10.45!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.05!DRAP1;;chr4:26322267..26322334,+!p3@RBPJ!0.78!13.06!RBPJ;;chr8:67525443..67525459,-!p2@MYBL1!0.77!7.51!MYBL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.55!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!0.77!4.90!CREB3L1;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.90!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.77!4.90!HOXA3;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.90!BNC2;;chr2:85981073..85981091,+!p5@ATOH8!0.77!4.90!ATOH8;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.99!HMGA2;;chr15:96874244..96874259,+!p5@NR2F2!0.76!12.41!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.76!6.53!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.55!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.55!DRAP1;;chr10:119302508..119302559,+!p5@EMX2!0.75!4.57!EMX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.57!CREB3L1;;chr3:69811858..69811881,+!p5@MITF!0.75!4.57!MITF;;chr12:66218255..66218304,+!p3@HMGA2!0.74!13.06!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.74!5.88!MEIS2;;chr20:55204351..55204377,+!p1@TFAP2C!0.74!5.88!TFAP2C;;chr12:124873357..124873401,-!p1@NCOR2!0.73!56.50!NCOR2;;chr1:164528410..164528428,+!p1@PBX1!0.72!35.60!PBX1;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.55!FOXD1;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.35!ENO1;;chr7:27205136..27205164,-!p1@HOXA9!0.72!4.25!HOXA9;;chr7:27239740..27239759,-!p2@HOXA13!0.72!4.25!HOXA13;;chr11:32457103..32457123,-!p3@WT1!0.72!4.25!WT1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.25!ZNF668;;chr15:37392724..37392757,-!p1@MEIS2!0.71!21.23!MEIS2;;chr17:38256799..38256815,-!p3@NR1D1!0.70!7.84!NR1D1;;chr12:53614115..53614154,-!p1@RARG!0.69!23.84!RARG;;chr3:141121847..141121868,+!p5@ZBTB38!0.69!6.21!ZBTB38;;chr1:170633262..170633285,+!p3@PRRX1!0.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|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.20!158.72!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.73!89.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.56!35.27!HOXA11;;chr9:77112244..77112262,+!p1@RORB!1.52!36.25!RORB;;chr7:27224795..27224840,-!p2@HOXA11!1.49!29.72!HOXA11;;chr19:13134772..13134822,+!p2@NFIX!1.48!42.46!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.41!ZBED1;;chr4:174450089..174450153,-!p2@HAND2!1.43!25.80!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.35!95.04!DRAP1;;chr2:176973498..176973524,+!p1@HOXD10!1.35!21.23!HOXD10;;chr11:46299539..46299620,+!p2@CREB3L1!1.32!33.31!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!1.32!25.15!DRAP1;;chr3:141150883..141150961,+!p6@ZBTB38!1.31!19.27!ZBTB38;;chr2:19558373..19558392,-!p1@OSR1!1.29!50.29!OSR1;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.56!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!1.23!16.00!EMX2;;chr4:174451350..174451363,-!p3@HAND2!1.23!16.00!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.22!463.75!HMGA1;;chr3:141151009..141151033,+!p10@ZBTB38!1.19!14.37!ZBTB38;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.02!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.40!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.11!36.90!TBX2;;chr11:32457075..32457095,-!p1@WT1!1.09!11.43!WT1;;chr2:239756671..239756732,+!p1@TWIST2!1.06!34.29!TWIST2;;chr19:13135582..13135600,+!p3@NFIX!1.05!10.12!NFIX;;chr15:96876966..96877017,+!p12@NR2F2!1.02!13.72!NR2F2;;chr3:69811882..69811898,+!p6@MITF!1.02!9.47!MITF;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.72!SATB2;;chr3:138665937..138665968,-!p1@FOXL2!1.01!9.14!FOXL2;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.60!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!1.00!12.41!DRAP1;;chr2:176981499..176981522,+!p2@HOXD10!0.99!8.82!HOXD10;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.43!GATA6;;chr10:119302232..119302265,+!p1@EMX2!0.96!8.16!EMX2;;chr6:34205372..34205412,+!p5@HMGA1!0.95!41.15!HMGA1;;chr19:13136241..13136258,+!p7@NFIX!0.95!10.78!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.84!SALL1;;chr6:28321971..28321995,-!p1@ZNF323!0.95!7.84!ZNF323;;chr11:65687158..65687216,+!p4@DRAP1!0.94!45.72!DRAP1;;chr17:7492684..7492778,-!p2@SOX15!0.94!16.66!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.78!NR2F2;;chr3:138665969..138665993,-!p2@FOXL2!0.93!7.51!FOXL2;;chr11:8102846..8102892,+!p1@TUB!0.92!10.45!TUB;;chr19:13134457..13134462,+!p5@NFIX!0.90!12.74!NFIX;;chr10:119302645..119302712,+!p3@EMX2!0.90!6.86!EMX2;;chr7:27239703..27239715,-!p1@HOXA13!0.90!6.86!HOXA13;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.62!FOSL1;;chr1:170633348..170633399,+!p2@PRRX1!0.87!8.82!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.85!10.78!TWIST2;;chr5:72743793..72743855,-!p4@FOXD1!0.85!7.18!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!71.20!MLLT11;;chr9:35732647..35732678,+!p2@CREB3!0.82!33.64!CREB3;;chr1:170632959..170632987,+!p4@PRRX1!0.82!6.21!PRRX1;;chr7:27196267..27196311,-!p1@HOXA7!0.82!5.55!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.55!HOXA10;;chr6:19837592..19837621,+!p1@ID4!0.80!35.27!ID4;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.04!FOXC2;;chrX:66763856..66763896,+!p1@AR!0.80!7.84!AR;;chr17:59477275..59477286,+!p3@TBX2!0.80!7.18!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.79!10.45!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.05!DRAP1;;chr4:26322267..26322334,+!p3@RBPJ!0.78!13.06!RBPJ;;chr8:67525443..67525459,-!p2@MYBL1!0.77!7.51!MYBL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.55!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!0.77!4.90!CREB3L1;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.90!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.77!4.90!HOXA3;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.90!BNC2;;chr2:85981073..85981091,+!p5@ATOH8!0.77!4.90!ATOH8;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.99!HMGA2;;chr15:96874244..96874259,+!p5@NR2F2!0.76!12.41!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.76!6.53!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.55!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.55!DRAP1;;chr10:119302508..119302559,+!p5@EMX2!0.75!4.57!EMX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.57!CREB3L1;;chr3:69811858..69811881,+!p5@MITF!0.75!4.57!MITF;;chr12:66218255..66218304,+!p3@HMGA2!0.74!13.06!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.74!5.88!MEIS2;;chr20:55204351..55204377,+!p1@TFAP2C!0.74!5.88!TFAP2C;;chr12:124873357..124873401,-!p1@NCOR2!0.73!56.50!NCOR2;;chr1:164528410..164528428,+!p1@PBX1!0.72!35.60!PBX1;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.55!FOXD1;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.35!ENO1;;chr7:27205136..27205164,-!p1@HOXA9!0.72!4.25!HOXA9;;chr7:27239740..27239759,-!p2@HOXA13!0.72!4.25!HOXA13;;chr11:32457103..32457123,-!p3@WT1!0.72!4.25!WT1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.25!ZNF668;;chr15:37392724..37392757,-!p1@MEIS2!0.71!21.23!MEIS2;;chr17:38256799..38256815,-!p3@NR1D1!0.70!7.84!NR1D1;;chr12:53614115..53614154,-!p1@RARG!0.69!23.84!RARG;;chr3:141121847..141121868,+!p5@ZBTB38!0.69!6.21!ZBTB38;;chr1:170633262..170633285,+!p3@PRRX1!0.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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
|fonse_cell_line=FF:0102694
|fonse_cell_line=FF:0102694
|fonse_cell_line_closure=FF:0102694
|fonse_cell_line_closure=FF:0102694
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg38.nobarcode.ctss.bed.gz
|id=FF:10571-108B4
|id=FF:10571-108B4
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102694
|is_a=EFO:0002091;;FF:0000210;;FF:0102694
|is_obsolete=
|library_id=CNhs11724
|library_id_phase_based=2:CNhs11724
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10571
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10571
|name=leiomyoma cell line:15425
|name=leiomyoma cell line:15425
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11724,LSID819,release009,COMPLETED
|profile_hcage=CNhs11724,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 57: Line 78:
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Line 77: Line 99:
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|sample_tissue=uterus
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|top_motifs=ALX4:2.42969087505;UFEwm:2.32288555903;GCM1,2:1.89672317179;NR1H4:1.88449861668;ZIC1..3:1.86129216636;PPARG:1.82517544446;ESR1:1.72068822763;CDC5L:1.68425431673;KLF4:1.68371941464;HSF1,2:1.68222879975;EN1,2:1.62596621742;NKX2-2,8:1.56773638643;GZF1:1.55122173736;NFE2L1:1.53088054997;NKX3-1:1.51882291584;ZBTB6:1.50624615654;NR3C1:1.42889709808;HOX{A4,D4}:1.41233907387;RXR{A,B,G}:1.30547646199;ZNF238:1.27284877334;XBP1:1.21350690293;TBX4,5:1.1421010979;HMX1:1.05866706865;HES1:1.05218236136;ARID5B:1.0447786045;TLX1..3_NFIC{dimer}:0.969148553023;RXRA_VDR{dimer}:0.964152070585;SMAD1..7,9:0.94938085499;TFAP4:0.926281350486;POU3F1..4:0.896201279036;MAFB:0.880432718593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.858981050436;SPZ1:0.844389981197;POU6F1:0.789821236297;NKX3-2:0.775013893653;ESRRA:0.755875819896;MYFfamily:0.754023237827;HOX{A5,B5}:0.742724005849;ATF6:0.709245547236;IKZF1:0.69656126563;GLI1..3:0.69553466623;TFCP2:0.645979425418;NKX6-1,2:0.613303841104;HAND1,2:0.60609161179;SRF:0.600565984109;PRDM1:0.598948720324;TEAD1:0.550070201694;GATA4:0.534708722399;NANOG{mouse}:0.530033963987;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.520328773131;GFI1B:0.518575718691;TBP:0.514166977449;NFIX:0.464216665374;TP53:0.459546518704;YY1:0.434422373234;NFE2L2:0.404120447245;PDX1:0.385654190117;ALX1:0.379278748586;MYBL2:0.360112445061;BACH2:0.351930989796;ONECUT1,2:0.335131258297;EBF1:0.319178677278;CDX1,2,4:0.313854041094;CRX:0.292956855264;PAX4:0.284582601432;LMO2:0.281594297972;GTF2I:0.271583496392;HIC1:0.255069538691;EVI1:0.251888431573;TAL1_TCF{3,4,12}:0.222981665099;PAX5:0.2229209209;MTE{core}:0.222178183262;TEF:0.219515796785;FOS_FOS{B,L1}_JUN{B,D}:0.20498970105;AIRE:0.18292395324;FOXD3:0.180185390347;ELK1,4_GABP{A,B1}:0.175915775795;GFI1:0.175533368526;ZNF148:0.158532193181;MZF1:0.153986007103;PBX1:0.144556168926;FOSL2:0.143192929029;TOPORS:0.13725636901;FOXM1:0.0922334996731;ZNF423:0.0792692684324;ZBTB16:0.0751695723366;PATZ1:0.0550116756065;GTF2A1,2:0.0530786596884;TFAP2{A,C}:0.0391305119537;RFX1:-0.00086749320932;NKX2-1,4:-0.00602621957209;T:-0.0228265555645;HNF1A:-0.0239031725996;NR6A1:-0.0323192148184;HLF:-0.0428466115284;REST:-0.0575505681696;NRF1:-0.0880336296415;NFATC1..3:-0.0974914540894;XCPE1{core}:-0.100727856332;HOXA9_MEIS1:-0.101208059697;NR5A1,2:-0.138646136478;bHLH_family:-0.138721677489;EGR1..3:-0.141849341148;AR:-0.149646135043;LHX3,4:-0.152145715656;MAZ:-0.165866068373;NHLH1,2:-0.190365527492;HMGA1,2:-0.194494026287;DBP:-0.199771826919;PAX6:-0.235194916865;TFAP2B:-0.252164535794;ZNF384:-0.255876189959;SREBF1,2:-0.256438734982;JUN:-0.277010748993;FOXL1:-0.287894540383;NFE2:-0.290149575435;DMAP1_NCOR{1,2}_SMARC:-0.303567362762;PAX1,9:-0.313448480951;RFX2..5_RFXANK_RFXAP:-0.326315564887;RREB1:-0.327198754861;ZNF143:-0.349474212999;CEBPA,B_DDIT3:-0.369957855448;HOX{A6,A7,B6,B7}:-0.380335792514;PAX3,7:-0.400182218478;HNF4A_NR2F1,2:-0.415694681109;TGIF1:-0.432685703221;RUNX1..3:-0.434020951434;ZFP161:-0.438241263482;SPI1:-0.460732057272;IRF1,2:-0.49568663683;FOX{I1,J2}:-0.496157079492;NFKB1_REL_RELA:-0.513629184075;LEF1_TCF7_TCF7L1,2:-0.52015742875;SOX17:-0.522487805798;FOXN1:-0.533731407249;MYB:-0.550708656006;E2F1..5:-0.551661740527;PAX2:-0.568129319586;PAX8:-0.577544718424;SP1:-0.578714532214;FOXO1,3,4:-0.585587602433;SOX5:-0.595360113984;HBP1_HMGB_SSRP1_UBTF:-0.597231921934;MTF1:-0.598744047207;AHR_ARNT_ARNT2:-0.601472664419;PRRX1,2:-0.622504780978;MED-1{core}:-0.626770888315;OCT4_SOX2{dimer}:-0.626820837641;NKX2-3_NKX2-5:-0.64004031102;STAT2,4,6:-0.649065097868;SNAI1..3:-0.651610666125;SPIB:-0.660364121356;FOXP3:-0.666488860748;ETS1,2:-0.707001552699;MEF2{A,B,C,D}:-0.728567087738;NFIL3:-0.728862168815;CREB1:-0.732778737835;IRF7:-0.755293493025;ATF2:-0.757834882391;VSX1,2:-0.758758112376;NANOG:-0.791438835848;HIF1A:-0.809178585958;IKZF2:-0.812166075401;ELF1,2,4:-0.815513273704;SOX2:-0.841171717727;FOX{D1,D2}:-0.84619388766;NFY{A,B,C}:-0.879580165605;MYOD1:-0.89468957909;GATA6:-0.89708432844;ZEB1:-0.996946733147;ATF5_CREB3:-1.00814748028;TFDP1:-1.01001551778;POU5F1:-1.02087074853;STAT5{A,B}:-1.03073787462;TLX2:-1.08363871561;ATF4:-1.11390192587;POU1F1:-1.16949466403;BREu{core}:-1.22428910063;FOXQ1:-1.24183128649;FOXP1:-1.25070233871;PITX1..3:-1.2537911716;CUX2:-1.27417042236;EP300:-1.31933457234;STAT1,3:-1.36007748689;SOX{8,9,10}:-1.37037121358;BPTF:-1.39426137823;POU2F1..3:-1.48893445639;RORA:-1.62939761267;ADNP_IRX_SIX_ZHX:-1.70180523989;FOX{F1,F2,J1}:-1.75039566092;FOXA2:-2.15687273058;RBPJ:-2.18581182609
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10571-108B4;search_select_hide=table117:FF:10571-108B4
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:leiomyoma cell line:15425
Species:Human (Homo sapiens)
Library ID:CNhs11724
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stageNA
sexfemale
ageNA
cell typesmooth muscle cell
cell lineNA
companyCoriell
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.2

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005329
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11724 CAGE DRX007917 DRR008789
Accession ID Hg19

Library idBAMCTSS
CNhs11724 DRZ000214 DRZ001599
Accession ID Hg38

Library idBAMCTSS
CNhs11724 DRZ011564 DRZ012949
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-1.60234e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.217
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.193
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.297
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0822
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.135
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.108
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.929
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00508
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0612
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.17
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.123
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.297
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.802
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.771
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.33
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.471
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.123
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.595
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11724

Jaspar motifP-value
MA0002.20.797
MA0003.10.36
MA0004.10.415
MA0006.10.0829
MA0007.10.379
MA0009.10.762
MA0014.10.468
MA0017.10.763
MA0018.22.31418e-7
MA0019.10.39
MA0024.17.72143e-5
MA0025.14.066e-4
MA0027.10.795
MA0028.10.162
MA0029.10.444
MA0030.10.0134
MA0031.10.0441
MA0035.20.129
MA0038.10.0204
MA0039.20.0764
MA0040.10.939
MA0041.10.691
MA0042.10.832
MA0043.16.1377e-8
MA0046.10.302
MA0047.20.18
MA0048.10.651
MA0050.12.52663e-4
MA0051.10.0167
MA0052.10.0029
MA0055.10.142
MA0057.10.0559
MA0058.10.252
MA0059.10.999
MA0060.11.42354e-7
MA0061.10.684
MA0062.23.49812e-4
MA0065.20.369
MA0066.10.0976
MA0067.10.00173
MA0068.10.599
MA0069.10.126
MA0070.10.39
MA0071.10.87
MA0072.10.83
MA0073.10.947
MA0074.10.281
MA0076.10.185
MA0077.10.067
MA0078.10.592
MA0079.20.537
MA0080.21.36817e-6
MA0081.10.0574
MA0083.10.219
MA0084.10.544
MA0087.10.931
MA0088.10.846
MA0090.10.262
MA0091.10.664
MA0092.10.58
MA0093.10.378
MA0099.20.42
MA0100.10.405
MA0101.10.00237
MA0102.27.73373e-4
MA0103.10.221
MA0104.20.093
MA0105.10.0124
MA0106.10.0764
MA0107.10.00228
MA0108.20.0898
MA0111.10.519
MA0112.20.00171
MA0113.10.84
MA0114.10.691
MA0115.10.936
MA0116.10.0417
MA0117.10.806
MA0119.10.113
MA0122.10.849
MA0124.10.00124
MA0125.10.428
MA0131.10.357
MA0135.10.432
MA0136.14.2878e-9
MA0137.20.00307
MA0138.20.309
MA0139.10.197
MA0140.10.109
MA0141.10.409
MA0142.10.101
MA0143.10.358
MA0144.10.156
MA0145.10.115
MA0146.10.512
MA0147.10.24
MA0148.10.961
MA0149.10.959
MA0150.10.467
MA0152.10.886
MA0153.10.268
MA0154.10.569
MA0155.10.277
MA0156.14.11115e-6
MA0157.10.364
MA0159.10.225
MA0160.10.524
MA0162.10.125
MA0163.14.16385e-4
MA0164.10.557
MA0258.10.271
MA0259.10.425



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11724

Novel motifP-value
10.212
100.384
1000.586
1010.628
1020.662
1030.0993
1040.927
1050.0723
1060.135
1070.0448
1080.289
1090.143
110.124
1100.199
1110.83
1120.193
1130.0314
1140.0723
1150.00422
1160.0652
1170.575
1180.415
1190.485
120.34
1200.052
1210.296
1220.149
1230.0179
1240.971
1250.0784
1260.942
1270.97
1280.191
1290.579
130.881
1300.468
1310.648
1320.661
1330.569
1340.295
1350.702
1360.276
1370.496
1380.668
1390.634
140.477
1400.585
1410.561
1420.794
1430.147
1440.298
1450.503
1460.382
1470.113
1480.15
1490.00105
150.858
1500.622
1510.826
1520.0909
1530.516
1540.584
1550.179
1560.712
1570.762
1580.00594
1590.158
160.00697
1600.553
1610.904
1620.465
1630.27
1640.355
1650.743
1660.118
1670.59
1680.68
1690.0114
170.388
180.121
190.0167
20.331
200.429
210.164
220.115
230.235
240.753
250.63
260.34
270.138
280.416
290.314
30.23
300.475
310.382
323.09885e-6
330.665
341
350.373
360.0197
370.0546
380.953
390.29
40.451
400.574
410.478
420.905
430.276
440.00573
450.746
460.0651
470.569
480.525
490.926
50.9
500.912
510.59
520.793
530.145
540.741
550.182
560.433
570.846
580.656
590.0242
60.852
600.56
610.762
620.758
630.491
640.485
650.411
660.607
670.341
680.325
690.187
70.363
700.115
710.101
720.934
730.0541
740.698
750.295
760.603
770.00559
780.637
798.63998e-4
80.0399
800.182
810.274
820.0675
830.564
840.567
850.14
860.482
870.0548
880.76
890.00762
90.331
900.522
910.463
920.0834
930.779
940.638
950.397
960.873
970.973
980.847
990.0126



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11724


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)

DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)
0060072 (benign neoplasm)
0060084 (cell type benign neoplasm)
127 (leiomyoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102694 (leiomyoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

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