FF:10417-106C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005399 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |accession_numbers=CAGE;DRX007982;DRR008854;DRZ000279;DRZ001664;DRZ011629;DRZ013014 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002108,UBERON:0000160,UBERON:0002394,UBERON:0004913,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003703,UBERON:0003928,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0002294,UBERON:0001173,UBERON:0002423,UBERON:0001174,UBERON:0004914 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:4929 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:4929 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.65!448.74!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.52!530.36!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!2.06!114.14!ELF3;;chr3:111314186..111314204,-!p1@ZBED2!2.05!110.60!ZBED2;;chr17:46682321..46682362,-!p1@HOXB6!1.87!73.34!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.80!62.10!ELF5;;chr11:61520075..61520136,+!p1@C11orf9!1.79!125.53!C11orf9;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr11:34535297..34535317,-!p1@ELF5!1.69!48.20!ELF5;;chr12:66218598..66218645,+!p2@HMGA2!1.60!172.55!HMGA2;;chr17:38020392..38020477,-!p1@IKZF3!1.59!37.70!IKZF3;;chr1:201979703..201979721,+!p2@ELF3!1.59!37.56!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.50!30.31!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.56!IRF6;;chr14:38064429..38064486,-!p1@FOXA1!1.49!30.16!FOXA1;;chr11:34642656..34642667,+!p2@EHF!1.48!29.28!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.47!509.07!FOSB;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.24!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.46!27.94!EHF;;chr12:66218003..66218018,+!p9@HMGA2!1.45!32.97!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.42!88.57!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.42!30.46!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.42!28.98!PPARG;;chr17:70117153..70117174,+!p1@SOX9!1.39!231.99!SOX9;;chr11:65554528..65554546,+!p1@OVOL1!1.37!22.33!OVOL1;;chr20:56195474..56195506,-!p1@ZBP1!1.35!21.44!ZBP1;;chr13:73633131..73633149,+!p1@KLF5!1.34!214.39!KLF5;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.48!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.01!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.52!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.31!19.22!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!164.86!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.00!ZBED1;;chr17:46655704..46655718,-!p2@HOXB4!1.25!25.14!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!1.25!18.93!HOXB2;;chr7:99680193..99680204,-!p2@ZNF3!1.23!15.97!ZNF3;;chr15:67418119..67418162,+!p5@SMAD3!1.22!17.15!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.52!HOXA3;;chr6:1312155..1312187,+!p2@FOXQ1!1.21!15.23!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.20!37.85!NCOA7;;chr6:34524093..34524135,-!p1@SPDEF!1.18!14.19!SPDEF;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.71!NR4A2;;chr19:12551785..12551823,-!p1@ZNF443!1.17!22.03!ZNF443;;chr12:66218836..66218888,+!p1@HMGA2!1.16!125.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.59!HOXB7;;chr7:99156249..99156311,+!p1@ZNF655!1.13!281.22!ZNF655;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!55.00!ZBTB20;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.63!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.13!12.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!1.12!15.52!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.12!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!1.10!1299.65!HMGA1;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.97!EGR3;;chr3:114343826..114343869,-!p4@ZBTB20!1.10!23.07!ZBTB20;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.91!FOSL1;;chr12:96588219..96588263,+!p2@ELK3!1.08!80.29!ELK3;;chr7:99613212..99613236,+!p1@ZKSCAN1!1.07!372.15!ZKSCAN1;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.65!HOXB9;;chr12:52445218..52445237,+!p1@NR4A1!1.04!128.49!NR4A1;;chr15:67357924..67357952,+!p2@SMAD3!1.04!67.72!SMAD3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.04!29.72!ZKSCAN1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.06!ARNTL2;;chr17:74137321..74137337,-!p1@FOXJ1!1.04!9.91!FOXJ1;;chr7:100076765..100076861,-!p1@TSC22D4!1.03!335.04!TSC22D4;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.50!PRDM1;;chr7:99679324..99679368,-!p1@ZNF3!1.02!134.25!ZNF3;;chr19:12476443..12476467,-!p1@ZNF442!1.02!15.82!ZNF442;;chr2:61108808..61108821,+!p3@REL!1.02!12.12!REL;;chr11:65554563..65554576,+!p2@OVOL1!1.02!9.46!OVOL1;;chr12:66218378..66218401,+!p6@HMGA2!1.01!14.34!HMGA2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.27!BATF;;chr3:170076314..170076334,+!p2@SKIL!1.01!12.12!SKIL;;chr6:126240442..126240459,+!p4@NCOA7!1.00!11.53!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.99!23.80!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.52!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.99!14.49!MECOM;;chr6:34524025..34524045,-!p3@SPDEF!0.99!8.87!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!89.45!ZBTB38;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.15!GLIS3;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.49!ETV4;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.07!JARID2;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.13!EGR4;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.95!17.15!ZKSCAN1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.27!ETV4;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.84!SPDEF;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.84!PRDM16;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.76!SOX4;;chr6:106534230..106534254,+!p2@PRDM1!0.94!19.81!PRDM1;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.36!NR1D1;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.36!ZNF92;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!31.20!ZBTB38;;chr12: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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.65!448.74!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.52!530.36!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!2.06!114.14!ELF3;;chr3:111314186..111314204,-!p1@ZBED2!2.05!110.60!ZBED2;;chr17:46682321..46682362,-!p1@HOXB6!1.87!73.34!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.80!62.10!ELF5;;chr11:61520075..61520136,+!p1@C11orf9!1.79!125.53!C11orf9;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr11:34535297..34535317,-!p1@ELF5!1.69!48.20!ELF5;;chr12:66218598..66218645,+!p2@HMGA2!1.60!172.55!HMGA2;;chr17:38020392..38020477,-!p1@IKZF3!1.59!37.70!IKZF3;;chr1:201979703..201979721,+!p2@ELF3!1.59!37.56!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.50!30.31!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.56!IRF6;;chr14:38064429..38064486,-!p1@FOXA1!1.49!30.16!FOXA1;;chr11:34642656..34642667,+!p2@EHF!1.48!29.28!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.47!509.07!FOSB;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.24!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.46!27.94!EHF;;chr12:66218003..66218018,+!p9@HMGA2!1.45!32.97!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.42!88.57!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.42!30.46!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.42!28.98!PPARG;;chr17:70117153..70117174,+!p1@SOX9!1.39!231.99!SOX9;;chr11:65554528..65554546,+!p1@OVOL1!1.37!22.33!OVOL1;;chr20:56195474..56195506,-!p1@ZBP1!1.35!21.44!ZBP1;;chr13:73633131..73633149,+!p1@KLF5!1.34!214.39!KLF5;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.48!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.01!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.52!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.31!19.22!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!164.86!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.00!ZBED1;;chr17:46655704..46655718,-!p2@HOXB4!1.25!25.14!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!1.25!18.93!HOXB2;;chr7:99680193..99680204,-!p2@ZNF3!1.23!15.97!ZNF3;;chr15:67418119..67418162,+!p5@SMAD3!1.22!17.15!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.52!HOXA3;;chr6:1312155..1312187,+!p2@FOXQ1!1.21!15.23!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.20!37.85!NCOA7;;chr6:34524093..34524135,-!p1@SPDEF!1.18!14.19!SPDEF;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.71!NR4A2;;chr19:12551785..12551823,-!p1@ZNF443!1.17!22.03!ZNF443;;chr12:66218836..66218888,+!p1@HMGA2!1.16!125.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.59!HOXB7;;chr7:99156249..99156311,+!p1@ZNF655!1.13!281.22!ZNF655;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!55.00!ZBTB20;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.63!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.13!12.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!1.12!15.52!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.12!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!1.10!1299.65!HMGA1;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.97!EGR3;;chr3:114343826..114343869,-!p4@ZBTB20!1.10!23.07!ZBTB20;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.91!FOSL1;;chr12:96588219..96588263,+!p2@ELK3!1.08!80.29!ELK3;;chr7:99613212..99613236,+!p1@ZKSCAN1!1.07!372.15!ZKSCAN1;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.65!HOXB9;;chr12:52445218..52445237,+!p1@NR4A1!1.04!128.49!NR4A1;;chr15:67357924..67357952,+!p2@SMAD3!1.04!67.72!SMAD3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.04!29.72!ZKSCAN1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.06!ARNTL2;;chr17:74137321..74137337,-!p1@FOXJ1!1.04!9.91!FOXJ1;;chr7:100076765..100076861,-!p1@TSC22D4!1.03!335.04!TSC22D4;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.50!PRDM1;;chr7:99679324..99679368,-!p1@ZNF3!1.02!134.25!ZNF3;;chr19:12476443..12476467,-!p1@ZNF442!1.02!15.82!ZNF442;;chr2:61108808..61108821,+!p3@REL!1.02!12.12!REL;;chr11:65554563..65554576,+!p2@OVOL1!1.02!9.46!OVOL1;;chr12:66218378..66218401,+!p6@HMGA2!1.01!14.34!HMGA2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.27!BATF;;chr3:170076314..170076334,+!p2@SKIL!1.01!12.12!SKIL;;chr6:126240442..126240459,+!p4@NCOA7!1.00!11.53!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.99!23.80!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.52!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.99!14.49!MECOM;;chr6:34524025..34524045,-!p3@SPDEF!0.99!8.87!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!89.45!ZBTB38;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.15!GLIS3;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.49!ETV4;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.07!JARID2;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.13!EGR4;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.95!17.15!ZKSCAN1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.27!ETV4;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.84!SPDEF;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.84!PRDM16;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.76!SOX4;;chr6:106534230..106534254,+!p2@PRDM1!0.94!19.81!PRDM1;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.36!NR1D1;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.36!ZNF92;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!31.20!ZBTB38;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!27.94!BHLHE41;;chr2:121493492..121493537,+!p2@GLI2!0.93!12.57!GLI2;;chr6:34204921..34204939,+!p3@HMGA1!0.92!227.85!HMGA1;;chr20:50159198..50159299,-!p1@NFATC2!0.92!10.94!NFATC2;;chr20:55204351..55204377,+!p1@TFAP2C!0.92!9.46!TFAP2C;;chr12:66218152..66218174,+!p10@HMGA2!0.91!7.69!HMGA2;;chr17:46622205..46622218,-!p3@HOXB2!0.90!8.13!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.90!6.95!HOXC10;;chr8:11561684..11561751,+!p1@GATA4!0.90!6.95!GATA4;;chr12:96588143..96588185,+!p1@ELK3!0.89!87.38!ELK3;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.53!TFAP2A;;chr19:12512015..12512044,-!p2@ZNF799!0.89!10.05!ZNF799;;chr17:46703212..46703238,-!p2@HOXB9!0.89!6.80!HOXB9;;chr13:28543285..28543314,-!p2@CDX2!0.89!6.80!CDX2;;chr8:76319876..76319926,+!p1@HNF4G!0.88!6.65!HNF4G;;chr6:106546808..106546833,+!p3@PRDM1!0.87!8.28!PRDM1;;chr15:67418177..67418204,+!p9@SMAD3!0.87!6.36!SMAD3;;chr12:96588368..96588394,+!p3@ELK3!0.86!17.74!ELK3;;chr18:55102598..55102623,+!p1@ONECUT2!0.86!6.21!ONECUT2;;chr10:114709999..114710031,+!p1@TCF7L2!0.85!152.74!TCF7L2;;chr12:77459306..77459365,-!p1@E2F7!0.85!80.73!E2F7;;chr19:12405606..12405629,-!p2@ZNF44!0.85!12.27!ZNF44;;chr11:65667846..65667868,-!p1@FOSL1!0.84!166.63!FOSL1;;chr14:61191018..61191048,-!p1@SIX4!0.84!13.60!SIX4;;chr1:158985493..158985535,+!p4@IFI16!0.84!9.31!IFI16;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.91!HOXC10;;chr16:86612320..86612394,+!p1@FOXL1!0.84!5.91!FOXL1;;chr17:36105042..36105060,-!p1@HNF1B!0.83!5.77!HNF1B;;chr17:46703942..46703964,-!p4@HOXB9!0.83!5.77!HOXB9;;chr11:31832658..31832681,-!p1@PAX6!0.83!5.77!PAX6;;chr7:26191809..26191890,+!p1@NFE2L3!0.82!29.42!NFE2L3;;chr9:3525727..3525828,-!p2@RFX3!0.82!15.23!RFX3;;chr10:64576105..64576133,-!p1@EGR2!0.82!12.12!EGR2;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.61!SOX4;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.84!FOXF2;;chr2:61108695..61108753,+!p1@REL!0.81!40.51!REL;;chr12:124873852..124873881,-!p3@NCOR2!0.81!35.78!NCOR2;;chr7:99679311..99679322,-!p3@ZNF3!0.81!6.51!ZNF3;;chr3:170075436..170075520,+!p1@SKIL!0.80!126.42!SKIL;;chr12:124873357..124873401,-!p1@NCOR2!0.80!66.54!NCOR2;;chr10:114710098..114710130,+!p2@TCF7L2!0.80!43.03!TCF7L2;;chr12:80084303..80084332,-!p1@PAWR!0.80!33.56!PAWR;;chr1:158985469..158985489,+!p7@IFI16!0.80!6.36!IFI16;;chr7:99680302..99680329,-!p5@ZNF3!0.80!5.32!ZNF3;;chr12:80084737..80084763,-!p3@PAWR!0.79!21.00!PAWR;;chr17:46655730..46655791,-!p1@HOXB4!0.79!13.75!HOXB4;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.28!PITX1;;chr10:48355030..48355090,+!p1@ZNF488!0.79!6.80!ZNF488;;chr17:46622229..46622257,-!p6@HOXB2!0.79!6.21!HOXB2;;chr12:66218420..66218439,+!p12@HMGA2!0.79!5.17!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!0.79!5.17!FOXA3;;chr9:110252035..110252057,-!p1@KLF4!0.78!88.71!KLF4;;chr12:96588279..96588299,+!p4@ELK3!0.78!25.58!ELK3;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.66!BRCA1;;chr6:45390025..45390076,+!p2@RUNX2!0.78!13.01!RUNX2;;chr17:38256799..38256815,-!p3@NR1D1!0.78!9.61!NR1D1;;chr17:45928521..45928539,-!p1@SP6!0.78!5.03!SP6;;chr17:7197911..7197964,-!p1@YBX2!0.78!5.03!YBX2;;chr6:28048343..28048354,+!p1@ZNF165!0.78!5.03!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.78!5.03!HOXC10;;chr19:48773337..48773339,+!p2@ZNF114!0.78!5.03!ZNF114;;chr6:21593973..21593988,+!p1@SOX4!0.77!192.80!SOX4;;chr1:212782094..212782109,+!p1@ATF3!0.77!145.79!ATF3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.77!53.97!GLIS2;;chr17:46621937..46621966,-!p2@HOXB2!0.77!14.34!HOXB2;;chr6:126240356..126240379,+!p7@NCOA7!0.77!6.06!NCOA7;;chr2:122042770..122042785,-!p1@TFCP2L1!0.77!4.88!TFCP2L1;;chr2:70142232..70142251,+!p1@MXD1!0.76!29.28!MXD1;;chr7:99156314..99156372,+!p4@ZNF655!0.76!17.30!ZNF655;;chr7:99647411..99647433,+!p2@ZSCAN21!0.76!13.75!ZSCAN21;;chr17:46675619..46675642,-!p5@HOXB6!0.76!4.73!HOXB6;;chr18:55102628..55102646,+!p2@ONECUT2!0.76!4.73!ONECUT2;;chr19:53193731..53193767,-!p1@ZNF83!0.75!45.54!ZNF83;;chr7:99156434..99156510,+!p2@ZNF655!0.75!30.90!ZNF655;;chr5:133450365..133450444,+!p1@TCF7!0.75!23.21!TCF7;;chr17:46655672..46655697,-!p3@HOXB4!0.75!4.58!HOXB4;;chr17:56065729..56065781,-!p2@VEZF1!0.74!21.59!VEZF1;;chr3:71632864..71632885,-!p4@FOXP1!0.74!16.71!FOXP1;;chr11:129245526..129245553,+!p1@BARX2!0.74!4.44!BARX2;;chr17:46690839..46690884,-!p1@HOXB8!0.74!4.44!HOXB8;;chr6:168227552..168227609,+!p1@MLLT4!0.73!40.22!MLLT4;;chr5:72744594..72744609,-!p1@FOXD1!0.73!21.88!FOXD1;;chr7:99647389..99647410,+!p1@ZSCAN21!0.73!17.45!ZSCAN21;;chr4:87857474..87857489,+!p7@AFF1!0.73!7.98!AFF1;;chr20:2673383..2673441,+!p1@EBF4!0.73!7.39!EBF4;;chr8:99956662..99956684,+!p1@OSR2!0.73!7.10!OSR2;;chr19:12551849..12551868,-!p4@ZNF443!0.73!5.03!ZNF443;;chr12:27485785..27485816,+!p1@ARNTL2!0.72!32.68!ARNTL2;;chr7:99156212..99156244,+!p3@ZNF655!0.72!18.19!ZNF655;;chr3:32023232..32023273,+!p1@ZNF860!0.72!6.36!ZNF860;;chr12:26277817..26277863,-!p2@BHLHE41!0.72!5.91!BHLHE41;;chr8:102504979..102505010,+!p2@GRHL2!0.72!4.29!GRHL2;;chr14:65569101..65569119,-!p3@MAX!0.71!14.49!MAX;;chr3:10154682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!0.24!93.74!MAX;;chr2:37458692..37458745,-!p1@CEBPZ!0.24!59.73!CEBPZ;;chr2:169312725..169312810,+!p1@CERS6!0.24!38.29!CERS6;;chr2:48541789..48541874,+!p1@FOXN2!0.24!34.89!FOXN2;;chr19:52772832..52772861,+!p1@ZNF766!0.24!15.52!ZNF766;;chr19:53400852..53400962,-!p1@ZNF320!0.24!15.23!ZNF320;;chr6:157098775..157098820,+!p1@ARID1B!0.24!12.86!ARID1B;;chr11:67007477..67007493,+!p2@KDM2A!0.24!12.86!KDM2A;;chr11:76092097..76092183,-!p1@PRKRIR!0.24!12.12!PRKRIR;;chr18:72265084..72265143,+!p1@ZNF407!0.24!11.24!ZNF407;;chr12:3068544..3068597,+!p1@TEAD4!0.24!8.87!TEAD4;;chr6:151712673..151712709,-!p1@ZBTB2!0.24!8.43!ZBTB2;;chr13:41635512..41635539,-!p2@ELF1!0.24!8.13!ELF1;;chr16:67596498..67596520,+!p2@CTCF!0.24!5.03!CTCF;;chr9:129622904..129622956,+!p1@ZBTB34!0.24!4.88!ZBTB34;;chr6:12011943..12012015,+!p2@HIVEP1!0.24!4.29!HIVEP1;;chr16:67596384..67596411,+!p3@CTCF!0.24!3.10!CTCF;;chr1:8763296..8763339,-!p9@RERE!0.24!3.10!RERE;;chr3:44754126..44754171,+!p1@ZNF502!0.24!3.10!ZNF502;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.24!2.96!ZKSCAN5;;chr11:58346585..58346607,+!p2@ZFP91!0.24!2.96!ZFP91;;chr1:151319654..151319698,-!p2@RFX5!0.24!2.66!RFX5;;chr6:7108179..7108199,+!p4@RREB1!0.24!2.37!RREB1;;chr12:122516678..122516687,+!p3@MLXIP!0.24!2.22!MLXIP;;chr18:77867121..77867138,+!p2@ADNP2!0.24!2.07!ADNP2;;chr8:67525524..67525543,-!p3@MYBL1!0.24!1.77!MYBL1;;chr9:110252074..110252079,-!p3@KLF4!0.24!1.77!KLF4;;chr9:35732312..35732324,+!p4@CREB3!0.24!1.77!CREB3;;chr9:32550965..32551031,-!p4@TOPORS!0.24!1.63!TOPORS;;chr11:6947647..6947698,+!p2@ZNF215!0.24!1.33!ZNF215;;chr6:45390343..45390388,+!p10@RUNX2!0.24!1.33!RUNX2;;chr1:33004996..33005017,+!p3@ZBTB8A!0.24!1.33!ZBTB8A;;chr19:50431973..50431998,+!p5@ATF5!0.24!1.18!ATF5;;chr14:75746722..75746777,+!p2@FOS!0.24!1.18!FOS;;chr4:81104958..81104981,+!p5@PRDM8!0.24!1.03!PRDM8;;chr5:92918860..92918871,+!p10@NR2F1!0.24!0.89!NR2F1;;chr6:134273586..134273611,+!p5@TBPL1!0.24!0.89!TBPL1;;chr6:10412576..10412599,-!p5@TFAP2A!0.24!0.74!TFAP2A;;chr6:1312688..1312701,+!p3@FOXQ1!0.24!0.74!FOXQ1;;chr6:1389824..1389840,+!p3@FOXF2!0.24!0.74!FOXF2;;chr7:138666186..138666213,-!p2@KIAA1549!0.24!0.74!KIAA1549;;chr15:90294087..90294115,-!p1@MESP1!0.24!0.74!MESP1;;chr15:96869165..96869183,+!p20@NR2F2!0.24!0.74!NR2F2;;chr16:86612149..86612161,+!p2@FOXL1!0.24!0.74!FOXL1;;chr17:38020481..38020506,-!p7@IKZF3!0.24!0.74!IKZF3;;chr17:38256872..38256874,-!p10@NR1D1!0.24!0.74!NR1D1;;chr17:38501500..38501517,+!p13@RARA!0.24!0.74!RARA;;chr17:41622982..41623001,-!p11@ETV4!0.24!0.74!ETV4;;chr17:46675608..46675618,-!p10@HOXB6!0.24!0.74!HOXB6;;chr18:56532079..56532095,+!p8@ZNF532!0.24!0.74!ZNF532;;chr19:45977697..45977713,+!p4@FOSB!0.24!0.74!FOSB;;chr19:52408192..52408200,-!p4@ZNF649!0.24!0.74!ZNF649;;chr1:2461692..2461710,-!p1@HES5!0.24!0.74!HES5;;chr1:3569135..3569150,+!p3@TP73!0.24!0.74!TP73;;chr1:42801540..42801562,-!p4@FOXJ3!0.24!0.74!FOXJ3;;chr20:50418972..50419029,-!p1@SALL4!0.24!0.74!SALL4;;chr21:36421401..36421414,-!p16@RUNX1!0.24!0.74!RUNX1;;chr2:10091783..10091811,+!p2@GRHL1!0.24!0.74!GRHL1;;chr2:70165961..70165981,+!p8@MXD1!0.24!0.74!MXD1;;chr3:114477832..114477843,-!p25@ZBTB20!0.24!0.74!ZBTB20;;chr3:114819101..114819121,-!p7@ZBTB20!0.24!0.74!ZBTB20;;chr4:109089901..109089930,-!p3@LEF1!0.24!0.74!LEF1;;chr10:45495946..45495976,+!p2@ZNF22!0.24!0.74!ZNF22;;chr11:129245780..129245785,+!p5@BARX2!0.24!0.74!BARX2;;chr11:2292226..2292270,-!p1@ASCL2!0.24!0.74!ASCL2;;chr11:31832207..31832226,-!p12@PAX6!0.24!0.74!PAX6;;chr11:34645764..34645775,+!p9@EHF!0.24!0.74!EHF;;chr12:11802957..11802964,+!p8@ETV6!0.24!0.74!ETV6;;chr12:125003168..125003180,-!p15@NCOR2!0.24!0.74!NCOR2;;chr12:54378864..54378884,+!p6@HOXC10!0.24!0.74!HOXC10;;chr12:54379915..54379935,+!p8@HOXC10!0.24!0.74!HOXC10;;chr12:66218413..66218418,+!p17@HMGA2!0.24!0.74!HMGA2;; | ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10417-106C3 | |id=FF:10417-106C3 | ||
|is_a=DOID:3119;;DOID:4929;;EFO:0002091 | |is_a=DOID:3119;;DOID:4929;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0004913 | ||
|is_obsolete= | |||
|library_id=CNhs10734 | |||
|library_id_phase_based=2:CNhs10734 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10417 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10417 | |||
|name=papillotubular adenocarcinoma cell line:TGBC18TKB | |name=papillotubular adenocarcinoma cell line:TGBC18TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10734,LSID691,release008,COMPLETED | |profile_hcage=CNhs10734,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.100430588783759,0,-0.16232475948514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.093435569045801,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.308562835056776,0,-0.261699791505672,0,0,0,0,0,0,0,0,0.0882935176081166,0,0,0,0,0,0,0,0.0155161774783457,0,0,0.0620936969611468,0,0,0,0,0,0,0,0,0.0598874413026267,0,0,0,0,0.0598874413026267,0,0,0,0,0,0,0.0598874413026267,0,0,0,0.0607391646168496,0,0,0,0.131112260886405,-0.056915985167481,0.0299437206513134,0,0.120184805335463,0,0.0144731874832445,-0.0822229314404195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22538679344715,0,0,0,-0.0975258942903476,-0.302326053386769,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=61.70925 | |rna_weight_ug=61.70925 | ||
|sample_age=79 | |sample_age=79 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1169 | |sample_cell_catalog=RCB1169 | ||
|sample_cell_line=TGBC18TKB | |sample_cell_line=TGBC18TKB | ||
| Line 77: | Line 99: | ||
|sample_tissue=duodenum | |sample_tissue=duodenum | ||
|top_motifs=ZEB1:2.26168819449;SNAI1..3:2.1952217586;TBX4,5:1.71711635278;XCPE1{core}:1.56906695764;MYOD1:1.38445816239;bHLH_family:1.36299975277;HSF1,2:1.3397460595;NKX2-3_NKX2-5:1.24965211417;TEAD1:1.21220295422;ADNP_IRX_SIX_ZHX:1.11773218672;PITX1..3:1.07132645351;SP1:1.05940524979;LEF1_TCF7_TCF7L1,2:1.03196169385;ZNF148:1.02852142088;SOX2:1.01247230703;NR1H4:0.985211819982;FOXN1:0.984443896586;NKX2-1,4:0.91655802395;E2F1..5:0.816287976809;POU2F1..3:0.814404272429;PPARG:0.813868812189;FOXQ1:0.793879682578;FOX{D1,D2}:0.791274499756;TLX2:0.782786576072;LMO2:0.777280058421;VSX1,2:0.770949749294;ELK1,4_GABP{A,B1}:0.653191319019;POU1F1:0.649725382837;FOXO1,3,4:0.580663437599;FOS_FOS{B,L1}_JUN{B,D}:0.563287308401;GLI1..3:0.53810222938;TFDP1:0.533909708795;BACH2:0.531052442893;RXRA_VDR{dimer}:0.530490640726;TFCP2:0.50502905435;ZNF423:0.492676258299;FOX{I1,J2}:0.485088590582;TFAP2{A,C}:0.48417743688;FOXP1:0.484109758283;NANOG:0.477004623336;FOXM1:0.476553270113;MAZ:0.47369714411;IRF7:0.444596882776;RREB1:0.439843602772;FOXD3:0.437141564931;EGR1..3:0.434623646524;PAX8:0.375807180688;HNF4A_NR2F1,2:0.368128857654;ONECUT1,2:0.336370570145;PDX1:0.308221362976;NFE2:0.291991379263;ZFP161:0.288245734194;PBX1:0.276652784718;FOX{F1,F2,J1}:0.273700905507;MYB:0.271718456994;NFKB1_REL_RELA:0.268506537572;FOSL2:0.267594825939;MED-1{core}:0.248484016509;JUN:0.244913086944;HNF1A:0.243045540631;NFY{A,B,C}:0.215244483848;TEF:0.208094037072;HBP1_HMGB_SSRP1_UBTF:0.19678650108;RFX2..5_RFXANK_RFXAP:0.185320804973;ATF4:0.183858821719;TP53:0.182299521625;MTF1:0.179825145953;TLX1..3_NFIC{dimer}:0.177084601484;BPTF:0.140365117666;RFX1:0.136788940628;ELF1,2,4:0.130213613844;CDC5L:0.127255030593;ATF5_CREB3:0.118385609205;TOPORS:0.11306989016;HOX{A6,A7,B6,B7}:0.107806795318;IRF1,2:0.0984841914913;SOX17:0.0764365041309;PAX5:0.0312898675791;FOXA2:0.00365287638767;SOX{8,9,10}:-0.0055784225567;OCT4_SOX2{dimer}:-0.00779319979674;TBP:-0.0237046081115;NR6A1:-0.0413137994595;AHR_ARNT_ARNT2:-0.0508799425037;ARID5B:-0.0696740594332;STAT2,4,6:-0.0708542188165;STAT5{A,B}:-0.0713761136714;ESRRA:-0.0715435662916;NKX6-1,2:-0.0761876131981;TFAP2B:-0.0810585677972;IKZF1:-0.0857579291721;STAT1,3:-0.0901112117205;LHX3,4:-0.125716524499;EBF1:-0.153866846455;ZNF143:-0.155662098288;PAX2:-0.158694014209;NRF1:-0.180293971064;ETS1,2:-0.183997640651;MZF1:-0.190349173357;GATA6:-0.20734740127;GTF2A1,2:-0.213338426373;ZNF384:-0.22495408725;SRF:-0.235781069953;CEBPA,B_DDIT3:-0.240990483355;HLF:-0.245370795202;MTE{core}:-0.247431045766;CUX2:-0.249979975602;ATF6:-0.255925533047;ATF2:-0.257988517379;HOX{A5,B5}:-0.264350667401;ESR1:-0.271854814108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.273448329331;RBPJ:-0.294163862599;ZBTB16:-0.3152467669;MEF2{A,B,C,D}:-0.332811702362;HIC1:-0.342757806344;ALX1:-0.349119269036;DMAP1_NCOR{1,2}_SMARC:-0.356034723721;SPI1:-0.359201807695;IKZF2:-0.359218297558;RORA:-0.366915252009;GTF2I:-0.377778502323;PRRX1,2:-0.380474239722;PRDM1:-0.389549686185;NR3C1:-0.402494895327;RUNX1..3:-0.403600208912;PATZ1:-0.414735735188;SREBF1,2:-0.421430523065;EN1,2:-0.421595968041;ALX4:-0.470229826413;NANOG{mouse}:-0.485774847624;TAL1_TCF{3,4,12}:-0.499541059068;NR5A1,2:-0.500732050111;SPIB:-0.502317076198;HES1:-0.510280741713;AIRE:-0.510428405923;GFI1B:-0.513559719472;FOXL1:-0.519230721669;GFI1:-0.521930127716;CREB1:-0.533790087239;NKX3-2:-0.537025838158;BREu{core}:-0.571997604966;HAND1,2:-0.582653210704;EVI1:-0.593532683823;CRX:-0.595966929185;MYBL2:-0.59760222146;POU5F1:-0.610289527115;SOX5:-0.634431380448;SPZ1:-0.646255088;ZBTB6:-0.692976938881;NFIL3:-0.693778619397;NFE2L2:-0.6961422118;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.716694336209;REST:-0.737529346224;NFIX:-0.742028095182;NKX3-1:-0.757025050995;HMGA1,2:-0.764910628387;ZIC1..3:-0.808071027284;MYFfamily:-0.824667707099;KLF4:-0.837752182666;HOX{A4,D4}:-0.845591032987;RXR{A,B,G}:-0.862208704209;POU3F1..4:-0.862716994972;NHLH1,2:-0.876999475969;AR:-0.878893359396;EP300:-0.889295768634;PAX3,7:-0.893950890381;DBP:-0.940313475503;UFEwm:-0.94186791327;NFATC1..3:-0.948084459863;XBP1:-0.975538148577;HOXA9_MEIS1:-1.00127764264;ZNF238:-1.00750950481;YY1:-1.0159004996;POU6F1:-1.02169069972;T:-1.0356930203;CDX1,2,4:-1.07297632377;PAX4:-1.07784562918;NFE2L1:-1.12104947787;SMAD1..7,9:-1.12694900054;MAFB:-1.13726001911;GZF1:-1.15712235772;HMX1:-1.19081340893;HIF1A:-1.19166379867;PAX6:-1.25776111925;PAX1,9:-1.26976165112;TFAP4:-1.27153031387;GATA4:-1.34025492871;TGIF1:-1.3948312769;GCM1,2:-1.45454534924;FOXP3:-1.52981405157;NKX2-2,8:-1.62591917495 | |top_motifs=ZEB1:2.26168819449;SNAI1..3:2.1952217586;TBX4,5:1.71711635278;XCPE1{core}:1.56906695764;MYOD1:1.38445816239;bHLH_family:1.36299975277;HSF1,2:1.3397460595;NKX2-3_NKX2-5:1.24965211417;TEAD1:1.21220295422;ADNP_IRX_SIX_ZHX:1.11773218672;PITX1..3:1.07132645351;SP1:1.05940524979;LEF1_TCF7_TCF7L1,2:1.03196169385;ZNF148:1.02852142088;SOX2:1.01247230703;NR1H4:0.985211819982;FOXN1:0.984443896586;NKX2-1,4:0.91655802395;E2F1..5:0.816287976809;POU2F1..3:0.814404272429;PPARG:0.813868812189;FOXQ1:0.793879682578;FOX{D1,D2}:0.791274499756;TLX2:0.782786576072;LMO2:0.777280058421;VSX1,2:0.770949749294;ELK1,4_GABP{A,B1}:0.653191319019;POU1F1:0.649725382837;FOXO1,3,4:0.580663437599;FOS_FOS{B,L1}_JUN{B,D}:0.563287308401;GLI1..3:0.53810222938;TFDP1:0.533909708795;BACH2:0.531052442893;RXRA_VDR{dimer}:0.530490640726;TFCP2:0.50502905435;ZNF423:0.492676258299;FOX{I1,J2}:0.485088590582;TFAP2{A,C}:0.48417743688;FOXP1:0.484109758283;NANOG:0.477004623336;FOXM1:0.476553270113;MAZ:0.47369714411;IRF7:0.444596882776;RREB1:0.439843602772;FOXD3:0.437141564931;EGR1..3:0.434623646524;PAX8:0.375807180688;HNF4A_NR2F1,2:0.368128857654;ONECUT1,2:0.336370570145;PDX1:0.308221362976;NFE2:0.291991379263;ZFP161:0.288245734194;PBX1:0.276652784718;FOX{F1,F2,J1}:0.273700905507;MYB:0.271718456994;NFKB1_REL_RELA:0.268506537572;FOSL2:0.267594825939;MED-1{core}:0.248484016509;JUN:0.244913086944;HNF1A:0.243045540631;NFY{A,B,C}:0.215244483848;TEF:0.208094037072;HBP1_HMGB_SSRP1_UBTF:0.19678650108;RFX2..5_RFXANK_RFXAP:0.185320804973;ATF4:0.183858821719;TP53:0.182299521625;MTF1:0.179825145953;TLX1..3_NFIC{dimer}:0.177084601484;BPTF:0.140365117666;RFX1:0.136788940628;ELF1,2,4:0.130213613844;CDC5L:0.127255030593;ATF5_CREB3:0.118385609205;TOPORS:0.11306989016;HOX{A6,A7,B6,B7}:0.107806795318;IRF1,2:0.0984841914913;SOX17:0.0764365041309;PAX5:0.0312898675791;FOXA2:0.00365287638767;SOX{8,9,10}:-0.0055784225567;OCT4_SOX2{dimer}:-0.00779319979674;TBP:-0.0237046081115;NR6A1:-0.0413137994595;AHR_ARNT_ARNT2:-0.0508799425037;ARID5B:-0.0696740594332;STAT2,4,6:-0.0708542188165;STAT5{A,B}:-0.0713761136714;ESRRA:-0.0715435662916;NKX6-1,2:-0.0761876131981;TFAP2B:-0.0810585677972;IKZF1:-0.0857579291721;STAT1,3:-0.0901112117205;LHX3,4:-0.125716524499;EBF1:-0.153866846455;ZNF143:-0.155662098288;PAX2:-0.158694014209;NRF1:-0.180293971064;ETS1,2:-0.183997640651;MZF1:-0.190349173357;GATA6:-0.20734740127;GTF2A1,2:-0.213338426373;ZNF384:-0.22495408725;SRF:-0.235781069953;CEBPA,B_DDIT3:-0.240990483355;HLF:-0.245370795202;MTE{core}:-0.247431045766;CUX2:-0.249979975602;ATF6:-0.255925533047;ATF2:-0.257988517379;HOX{A5,B5}:-0.264350667401;ESR1:-0.271854814108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.273448329331;RBPJ:-0.294163862599;ZBTB16:-0.3152467669;MEF2{A,B,C,D}:-0.332811702362;HIC1:-0.342757806344;ALX1:-0.349119269036;DMAP1_NCOR{1,2}_SMARC:-0.356034723721;SPI1:-0.359201807695;IKZF2:-0.359218297558;RORA:-0.366915252009;GTF2I:-0.377778502323;PRRX1,2:-0.380474239722;PRDM1:-0.389549686185;NR3C1:-0.402494895327;RUNX1..3:-0.403600208912;PATZ1:-0.414735735188;SREBF1,2:-0.421430523065;EN1,2:-0.421595968041;ALX4:-0.470229826413;NANOG{mouse}:-0.485774847624;TAL1_TCF{3,4,12}:-0.499541059068;NR5A1,2:-0.500732050111;SPIB:-0.502317076198;HES1:-0.510280741713;AIRE:-0.510428405923;GFI1B:-0.513559719472;FOXL1:-0.519230721669;GFI1:-0.521930127716;CREB1:-0.533790087239;NKX3-2:-0.537025838158;BREu{core}:-0.571997604966;HAND1,2:-0.582653210704;EVI1:-0.593532683823;CRX:-0.595966929185;MYBL2:-0.59760222146;POU5F1:-0.610289527115;SOX5:-0.634431380448;SPZ1:-0.646255088;ZBTB6:-0.692976938881;NFIL3:-0.693778619397;NFE2L2:-0.6961422118;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.716694336209;REST:-0.737529346224;NFIX:-0.742028095182;NKX3-1:-0.757025050995;HMGA1,2:-0.764910628387;ZIC1..3:-0.808071027284;MYFfamily:-0.824667707099;KLF4:-0.837752182666;HOX{A4,D4}:-0.845591032987;RXR{A,B,G}:-0.862208704209;POU3F1..4:-0.862716994972;NHLH1,2:-0.876999475969;AR:-0.878893359396;EP300:-0.889295768634;PAX3,7:-0.893950890381;DBP:-0.940313475503;UFEwm:-0.94186791327;NFATC1..3:-0.948084459863;XBP1:-0.975538148577;HOXA9_MEIS1:-1.00127764264;ZNF238:-1.00750950481;YY1:-1.0159004996;POU6F1:-1.02169069972;T:-1.0356930203;CDX1,2,4:-1.07297632377;PAX4:-1.07784562918;NFE2L1:-1.12104947787;SMAD1..7,9:-1.12694900054;MAFB:-1.13726001911;GZF1:-1.15712235772;HMX1:-1.19081340893;HIF1A:-1.19166379867;PAX6:-1.25776111925;PAX1,9:-1.26976165112;TFAP4:-1.27153031387;GATA4:-1.34025492871;TGIF1:-1.3948312769;GCM1,2:-1.45454534924;FOXP3:-1.52981405157;NKX2-2,8:-1.62591917495 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10417-106C3;search_select_hide=table117:FF:10417-106C3 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | papillotubular adenocarcinoma cell line:TGBC18TKB |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10734 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10734
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10734
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.434 |
| 10 | 10 | 0.908 |
| 100 | 100 | 0.928 |
| 101 | 101 | 0.0737 |
| 102 | 102 | 0.56 |
| 103 | 103 | 0.165 |
| 104 | 104 | 0.875 |
| 105 | 105 | 0.632 |
| 106 | 106 | 0.368 |
| 107 | 107 | 0.877 |
| 108 | 108 | 0.788 |
| 109 | 109 | 0.279 |
| 11 | 11 | 0.172 |
| 110 | 110 | 0.758 |
| 111 | 111 | 0.259 |
| 112 | 112 | 0.308 |
| 113 | 113 | 0.24 |
| 114 | 114 | 0.119 |
| 115 | 115 | 0.456 |
| 116 | 116 | 0.154 |
| 117 | 117 | 0.0207 |
| 118 | 118 | 0.931 |
| 119 | 119 | 0.65 |
| 12 | 12 | 0.564 |
| 120 | 120 | 0.631 |
| 121 | 121 | 0.289 |
| 122 | 122 | 0.354 |
| 123 | 123 | 0.855 |
| 124 | 124 | 0.0194 |
| 125 | 125 | 0.244 |
| 126 | 126 | 0.834 |
| 127 | 127 | 0.965 |
| 128 | 128 | 0.105 |
| 129 | 129 | 0.236 |
| 13 | 13 | 0.0816 |
| 130 | 130 | 0.64 |
| 131 | 131 | 0.0709 |
| 132 | 132 | 0.394 |
| 133 | 133 | 0.125 |
| 134 | 134 | 0.499 |
| 135 | 135 | 0.0183 |
| 136 | 136 | 0.0881 |
| 137 | 137 | 0.112 |
| 138 | 138 | 0.0936 |
| 139 | 139 | 0.205 |
| 14 | 14 | 0.878 |
| 140 | 140 | 0.244 |
| 141 | 141 | 0.042 |
| 142 | 142 | 0.765 |
| 143 | 143 | 0.0145 |
| 144 | 144 | 0.11 |
| 145 | 145 | 0.804 |
| 146 | 146 | 0.361 |
| 147 | 147 | 0.576 |
| 148 | 148 | 0.831 |
| 149 | 149 | 0.344 |
| 15 | 15 | 0.647 |
| 150 | 150 | 0.245 |
| 151 | 151 | 0.552 |
| 152 | 152 | 0.0165 |
| 153 | 153 | 0.311 |
| 154 | 154 | 0.488 |
| 155 | 155 | 0.913 |
| 156 | 156 | 0.33 |
| 157 | 157 | 0.429 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.246 |
| 16 | 16 | 0.83 |
| 160 | 160 | 0.49 |
| 161 | 161 | 0.302 |
| 162 | 162 | 0.56 |
| 163 | 163 | 0.922 |
| 164 | 164 | 0.987 |
| 165 | 165 | 0.892 |
| 166 | 166 | 0.26 |
| 167 | 167 | 0.627 |
| 168 | 168 | 0.958 |
| 169 | 169 | 0.135 |
| 17 | 17 | 0.443 |
| 18 | 18 | 0.0414 |
| 19 | 19 | 0.25 |
| 2 | 2 | 0.83 |
| 20 | 20 | 0.0896 |
| 21 | 21 | 0.794 |
| 22 | 22 | 0.738 |
| 23 | 23 | 0.705 |
| 24 | 24 | 0.918 |
| 25 | 25 | 0.748 |
| 26 | 26 | 0.737 |
| 27 | 27 | 0.485 |
| 28 | 28 | 0.5 |
| 29 | 29 | 0.858 |
| 3 | 3 | 0.534 |
| 30 | 30 | 0.151 |
| 31 | 31 | 0.219 |
| 32 | 32 | 4.06977e-5 |
| 33 | 33 | 0.0571 |
| 34 | 34 | 0.66 |
| 35 | 35 | 0.00335 |
| 36 | 36 | 0.972 |
| 37 | 37 | 0.642 |
| 38 | 38 | 0.529 |
| 39 | 39 | 0.865 |
| 4 | 4 | 0.563 |
| 40 | 40 | 0.423 |
| 41 | 41 | 0.0949 |
| 42 | 42 | 0.942 |
| 43 | 43 | 0.151 |
| 44 | 44 | 0.348 |
| 45 | 45 | 0.255 |
| 46 | 46 | 0.182 |
| 47 | 47 | 0.546 |
| 48 | 48 | 0.617 |
| 49 | 49 | 0.176 |
| 5 | 5 | 0.394 |
| 50 | 50 | 0.192 |
| 51 | 51 | 0.767 |
| 52 | 52 | 0.447 |
| 53 | 53 | 0.833 |
| 54 | 54 | 0.927 |
| 55 | 55 | 0.788 |
| 56 | 56 | 0.711 |
| 57 | 57 | 0.706 |
| 58 | 58 | 0.789 |
| 59 | 59 | 0.544 |
| 6 | 6 | 0.357 |
| 60 | 60 | 0.618 |
| 61 | 61 | 0.254 |
| 62 | 62 | 0.317 |
| 63 | 63 | 0.287 |
| 64 | 64 | 0.362 |
| 65 | 65 | 0.98 |
| 66 | 66 | 0.317 |
| 67 | 67 | 0.359 |
| 68 | 68 | 0.0365 |
| 69 | 69 | 0.294 |
| 7 | 7 | 0.646 |
| 70 | 70 | 0.911 |
| 71 | 71 | 0.371 |
| 72 | 72 | 0.752 |
| 73 | 73 | 0.0106 |
| 74 | 74 | 0.0323 |
| 75 | 75 | 0.389 |
| 76 | 76 | 0.842 |
| 77 | 77 | 0.425 |
| 78 | 78 | 0.0324 |
| 79 | 79 | 0.276 |
| 8 | 8 | 0.0909 |
| 80 | 80 | 0.601 |
| 81 | 81 | 0.00459 |
| 82 | 82 | 7.7262e-4 |
| 83 | 83 | 0.367 |
| 84 | 84 | 0.897 |
| 85 | 85 | 0.254 |
| 86 | 86 | 0.779 |
| 87 | 87 | 0.0677 |
| 88 | 88 | 0.684 |
| 89 | 89 | 0.442 |
| 9 | 9 | 0.554 |
| 90 | 90 | 0.186 |
| 91 | 91 | 0.104 |
| 92 | 92 | 0.337 |
| 93 | 93 | 0.847 |
| 94 | 94 | 0.036 |
| 95 | 95 | 0.0637 |
| 96 | 96 | 0.556 |
| 97 | 97 | 0.383 |
| 98 | 98 | 0.0574 |
| 99 | 99 | 0.76 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10734
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3119 gastrointestinal system cancer
DOID:4929 tubular adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
UBERON:0004913 hepatopancreatic ampulla
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
4929 (tubular adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002108 (small intestine)
0000160 (intestine)
0002394 (bile duct)
0004913 (hepatopancreatic ampulla)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003703 (extrahepatic bile duct)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002114 (duodenum)
0005409 (gastrointestinal system)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)
0001174 (common bile duct)
0004914 (duodenal papilla)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
