FF:10470-106I2: Difference between revisions

Latest revision as of 14:25, 3 June 2020

Name:	gall bladder carcinoma cell line:TGBC14TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs11256
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gall bladder
dev stage	NA
sex	female
age	unknown
cell type	unclassifiable
cell line	TGBC14TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005108

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11256		CAGE		DRX007888		DRR008760

Accession ID Hg19

Library id		BAM		CTSS
CNhs11256		DRZ000185		DRZ001570

Accession ID Hg38

Library id		BAM		CTSS
CNhs11256		DRZ011535		DRZ012920

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0699
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.529
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0776
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0291
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0699
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0886
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0791
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.441
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0776
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.435
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.143
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.107
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0486
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	1.077
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11256

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.75861e-5
MA0003.1	MA0003.1	0.941
MA0004.1	MA0004.1	0.821
MA0006.1	MA0006.1	0.341
MA0007.1	MA0007.1	0.554
MA0009.1	MA0009.1	0.736
MA0014.1	MA0014.1	0.155
MA0017.1	MA0017.1	0.519
MA0018.2	MA0018.2	0.44
MA0019.1	MA0019.1	0.929
MA0024.1	MA0024.1	2.10024e-6
MA0025.1	MA0025.1	0.998
MA0027.1	MA0027.1	0.441
MA0028.1	MA0028.1	0.00222
MA0029.1	MA0029.1	0.895
MA0030.1	MA0030.1	0.127
MA0031.1	MA0031.1	0.501
MA0035.2	MA0035.2	0.97
MA0038.1	MA0038.1	0.0135
MA0039.2	MA0039.2	7.42152e-4
MA0040.1	MA0040.1	0.00823
MA0041.1	MA0041.1	0.183
MA0042.1	MA0042.1	0.19
MA0043.1	MA0043.1	0.336
MA0046.1	MA0046.1	0.23
MA0047.2	MA0047.2	0.547
MA0048.1	MA0048.1	0.856
MA0050.1	MA0050.1	9.0097e-7
MA0051.1	MA0051.1	4.78796e-5
MA0052.1	MA0052.1	0.221
MA0055.1	MA0055.1	0.00463
MA0057.1	MA0057.1	0.941
MA0058.1	MA0058.1	0.552
MA0059.1	MA0059.1	0.154
MA0060.1	MA0060.1	7.00746e-10
MA0061.1	MA0061.1	8.93618e-4
MA0062.2	MA0062.2	0.00509
MA0065.2	MA0065.2	0.42
MA0066.1	MA0066.1	0.258
MA0067.1	MA0067.1	0.143
MA0068.1	MA0068.1	0.0522
MA0069.1	MA0069.1	0.408
MA0070.1	MA0070.1	0.24
MA0071.1	MA0071.1	0.699
MA0072.1	MA0072.1	0.695
MA0073.1	MA0073.1	0.77
MA0074.1	MA0074.1	0.806
MA0076.1	MA0076.1	0.00228
MA0077.1	MA0077.1	0.65
MA0078.1	MA0078.1	0.444
MA0079.2	MA0079.2	0.88
MA0080.2	MA0080.2	1.02071e-6
MA0081.1	MA0081.1	0.0105
MA0083.1	MA0083.1	0.117
MA0084.1	MA0084.1	0.036
MA0087.1	MA0087.1	0.373
MA0088.1	MA0088.1	0.547
MA0090.1	MA0090.1	0.0416
MA0091.1	MA0091.1	0.00187
MA0092.1	MA0092.1	0.232
MA0093.1	MA0093.1	0.845
MA0099.2	MA0099.2	9.2937e-7
MA0100.1	MA0100.1	0.922
MA0101.1	MA0101.1	0.0557
MA0102.2	MA0102.2	0.815
MA0103.1	MA0103.1	4.53539e-6
MA0104.2	MA0104.2	0.684
MA0105.1	MA0105.1	6.74548e-6
MA0106.1	MA0106.1	0.837
MA0107.1	MA0107.1	0.0229
MA0108.2	MA0108.2	0.317
MA0111.1	MA0111.1	0.75
MA0112.2	MA0112.2	0.102
MA0113.1	MA0113.1	0.199
MA0114.1	MA0114.1	0.288
MA0115.1	MA0115.1	0.0932
MA0116.1	MA0116.1	0.0115
MA0117.1	MA0117.1	0.16
MA0119.1	MA0119.1	0.578
MA0122.1	MA0122.1	0.691
MA0124.1	MA0124.1	0.943
MA0125.1	MA0125.1	0.0326
MA0131.1	MA0131.1	0.825
MA0135.1	MA0135.1	0.0242
MA0136.1	MA0136.1	1.09066e-4
MA0137.2	MA0137.2	0.171
MA0138.2	MA0138.2	0.00166
MA0139.1	MA0139.1	0.401
MA0140.1	MA0140.1	0.362
MA0141.1	MA0141.1	0.131
MA0142.1	MA0142.1	0.348
MA0143.1	MA0143.1	0.0801
MA0144.1	MA0144.1	0.88
MA0145.1	MA0145.1	0.746
MA0146.1	MA0146.1	0.0604
MA0147.1	MA0147.1	0.508
MA0148.1	MA0148.1	0.279
MA0149.1	MA0149.1	0.41
MA0150.1	MA0150.1	0.00375
MA0152.1	MA0152.1	0.173
MA0153.1	MA0153.1	0.0358
MA0154.1	MA0154.1	0.00784
MA0155.1	MA0155.1	0.593
MA0156.1	MA0156.1	0.0832
MA0157.1	MA0157.1	0.151
MA0159.1	MA0159.1	0.677
MA0160.1	MA0160.1	0.695
MA0162.1	MA0162.1	0.352
MA0163.1	MA0163.1	0.195
MA0164.1	MA0164.1	0.265
MA0258.1	MA0258.1	0.216
MA0259.1	MA0259.1	0.895

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11256

Novel motif	Logo	P-value
1	1	0.419
10	10	0.677
100	100	0.43
101	101	0.785
102	102	0.796
103	103	0.062
104	104	0.61
105	105	0.738
106	106	0.0467
107	107	0.183
108	108	0.711
109	109	0.451
11	11	0.0928
110	110	0.811
111	111	0.264
112	112	0.219
113	113	0.28
114	114	0.0219
115	115	0.999
116	116	0.561
117	117	0.412
118	118	0.85
119	119	0.429
12	12	0.343
120	120	0.33
121	121	0.366
122	122	0.807
123	123	0.193
124	124	0.114
125	125	0.573
126	126	0.755
127	127	0.369
128	128	0.0127
129	129	0.998
13	13	0.0715
130	130	0.613
131	131	0.313
132	132	0.474
133	133	0.00822
134	134	0.334
135	135	0.00902
136	136	0.0255
137	137	0.216
138	138	0.0625
139	139	0.0117
14	14	0.754
140	140	0.735
141	141	0.822
142	142	0.995
143	143	0.00352
144	144	0.193
145	145	0.48
146	146	0.552
147	147	0.884
148	148	0.078
149	149	0.144
15	15	0.25
150	150	0.402
151	151	0.297
152	152	0.915
153	153	0.111
154	154	0.671
155	155	0.182
156	156	0.612
157	157	0.93
158	158	0.712
159	159	0.133
16	16	0.593
160	160	0.242
161	161	0.418
162	162	0.369
163	163	0.607
164	164	0.957
165	165	0.567
166	166	0.663
167	167	0.653
168	168	0.589
169	169	0.966
17	17	0.72
18	18	0.032
19	19	0.142
2	2	0.608
20	20	0.349
21	21	0.903
22	22	0.724
23	23	0.0611
24	24	0.599
25	25	0.831
26	26	0.662
27	27	0.644
28	28	0.836
29	29	0.711
3	3	0.292
30	30	0.711
31	31	0.185
32	32	0.0182
33	33	0.256
34	34	0.402
35	35	0.0409
36	36	0.941
37	37	0.327
38	38	0.851
39	39	0.601
4	4	0.866
40	40	0.325
41	41	0.00856
42	42	0.553
43	43	0.159
44	44	0.948
45	45	0.81
46	46	0.107
47	47	0.938
48	48	0.946
49	49	0.0967
5	5	0.33
50	50	0.381
51	51	0.544
52	52	0.915
53	53	0.544
54	54	0.597
55	55	0.999
56	56	0.664
57	57	0.796
58	58	0.464
59	59	0.113
6	6	0.458
60	60	0.292
61	61	0.594
62	62	0.105
63	63	0.643
64	64	0.549
65	65	0.0558
66	66	0.221
67	67	0.35
68	68	0.129
69	69	0.47
7	7	0.579
70	70	0.264
71	71	0.522
72	72	0.826
73	73	0.983
74	74	0.0374
75	75	0.935
76	76	0.644
77	77	0.655
78	78	0.659
79	79	0.133
8	8	0.0874
80	80	0.0343
81	81	0.0748
82	82	0.00109
83	83	0.594
84	84	0.589
85	85	0.00516
86	86	0.403
87	87	0.508
88	88	0.716
89	89	0.0741
9	9	0.187
90	90	0.0593
91	91	0.24
92	92	0.16
93	93	0.409
94	94	0.257
95	95	0.826
96	96	0.151
97	97	0.65
98	98	0.0575
99	99	0.621

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11256

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:1000415 epithelial cell of gall bladder
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000415 (epithelial cell of gall bladder)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002110 (gallbladder)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002110,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005911,UBERON:0005423,UBERON:0002553,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005291,UBERON:0002323,UBERON:0003929,UBERON:0005177,UBERON:0003104,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0005256,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0003886,UBERON:0009497,UBERON:0005173,UBERON:0000015,UBERON:0002532,UBERON:0001555,UBERON:0002417,UBERON:0007026,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423,UBERON:0009142,UBERON:0006235,UBERON:0004912,UBERON:0006595,UBERON:0006603,UBERON:0004161,UBERON:0006242
+|DRA_sample_Accession=CAGE@SAMD00005108
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000255,CL:1000415
+|accession_numbers=CAGE;DRX007888;DRR008760;DRZ000185;DRZ001570;DRZ011535;DRZ012920
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002110,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000415
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.10!123.98!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.02!103.25!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.95!87.80!ELF3;;chr17:7493405..7493419,-!p1@SOX15!1.95!87.22!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!1.91!100.51!TFAP2C;;chr17:46682321..46682362,-!p1@HOXB6!1.91!80.76!HOXB6;;chr6:10415484..10415508,-!p3@TFAP2A!1.74!54.56!TFAP2A;;chr17:74137321..74137337,-!p1@FOXJ1!1.68!46.54!FOXJ1;;chr6:126240442..126240459,+!p4@NCOA7!1.64!53.97!NCOA7;;chr2:16080659..16080685,+!p1@MYCN!1.64!43.02!MYCN;;chr3:12330560..12330579,+!p1@PPARG!1.58!42.24!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.24!ZBED1;;chr14:38064429..38064486,-!p1@FOXA1!1.51!31.09!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.45!27.38!GRHL2;;chr19:22193731..22193751,-!p1@ZNF208!1.42!25.23!ZNF208;;chr6:126240380..126240430,+!p2@NCOA7!1.40!61.79!NCOA7;;chr11:34642656..34642667,+!p2@EHF!1.40!24.05!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.72!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.62!IRF6;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!36.57!TFAP2A;;chr6:126240463..126240489,+!p6@NCOA7!1.37!25.03!NCOA7;;chr5:149546334..149546364,+!p1@CDX1!1.32!19.75!CDX1;;chr19:45971246..45971265,+!p1@FOSB!1.30!345.73!FOSB;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.58!HOXC5;;chr17:48072574..48072597,-!p1@DLX3!1.28!18.19!DLX3;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.01!HOXD11;;chr2:231084639..231084654,-!p2@SP110!1.25!27.96!SP110;;chr11:34645791..34645836,+!p3@EHF!1.25!16.82!EHF;;chr6:28321909..28321965,-!p3@ZNF323!1.25!16.82!ZNF323;;chr6:10419768..10419819,-!p6@TFAP2A!1.25!16.62!TFAP2A;;chr2:176969179..176969226,+!p2@HOXD11!1.24!16.43!HOXD11;;chr6:1312325..1312340,+!p1@FOXQ1!1.21!24.84!FOXQ1;;chr9:96717629..96717644,-!p1@BARX1!1.20!14.86!BARX1;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.78!NR4A1;;chr15:96869511..96869525,+!p16@NR2F2!1.18!15.64!NR2F2;;chr19:20278043..20278054,+!p2@ZNF486!1.15!13.10!ZNF486;;chr14:75988771..75988826,+!p1@BATF!1.12!16.43!BATF;;chr6:10415276..10415341,-!p2@TFAP2A!1.12!15.06!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!1.12!12.32!BARX2;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!1.12!12.12!ZNF663;;chr5:134369905..134369972,-!p1@PITX1!1.10!17.99!PITX1;;chr6:28321971..28321995,-!p1@ZNF323!1.10!11.73!ZNF323;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.15!HOXC10;;chr1:164528410..164528428,+!p1@PBX1!1.07!82.13!PBX1;;chr9:100615499..100615519,+!p1@FOXE1!1.07!10.76!FOXE1;;chrX:129244655..129244697,-!p4@ELF4!1.06!18.77!ELF4;;chr12:54785074..54785122,-!p2@ZNF385A!1.06!16.04!ZNF385A;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.56!PITX1;;chr3:128206762..128206781,-!p2@GATA2!1.04!62.58!GATA2;;chr16:54320675..54320715,-!p1@IRX3!1.04!21.71!IRX3;;chr11:615570..615721,-!p2@IRF7!1.04!19.95!IRF7;;chr8:102504690..102504704,+!p3@GRHL2!1.04!9.97!GRHL2;;chr11:615942..615957,-!p1@IRF7!1.03!94.26!IRF7;;chr17:7492684..7492778,-!p2@SOX15!1.03!20.92!SOX15;;chr2:10091815..10091864,+!p1@GRHL1!1.03!13.10!GRHL1;;chr19:20278012..20278034,+!p1@ZNF486!1.02!81.35!ZNF486;;chr3:32023232..32023273,+!p1@ZNF860!1.02!13.49!ZNF860;;chrX:24169518..24169522,+!p8@ZFX!1.02!9.58!ZFX;;chr12:54348655..54348693,+!p1@HOXC12!1.02!9.39!HOXC12;;chr1:24645921..24645973,+!p2@GRHL3!1.02!9.39!GRHL3;;chr16:54320646..54320672,-!p2@IRX3!1.01!14.28!IRX3;;chr16:54320617..54320643,-!p3@IRX3!1.01!11.93!IRX3;;chr19:52956798..52956843,+!p1@ZNF578!1.00!18.19!ZNF578;;chr1:164528445..164528459,+!p2@PBX1!0.99!28.16!PBX1;;chr6:126240356..126240379,+!p7@NCOA7!0.99!10.95!NCOA7;;chr7:73038839..73038862,-!p1@MLXIPL!0.99!8.80!MLXIPL;;chr1:935398..935465,-!p2@HES4!0.98!18.19!HES4;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.73!DNMT3A;;chr12:54785054..54785072,-!p4@ZNF385A!0.98!9.78!ZNF385A;;chr17:45928521..45928539,-!p1@SP6!0.98!8.60!SP6;;chr17:41739283..41739297,-!p1@MEOX1!0.97!8.41!MEOX1;;chr17:46688334..46688385,-!p1@HOXB7!0.96!11.93!HOXB7;;chr6:28048343..28048354,+!p1@ZNF165!0.96!8.21!ZNF165;;chr10:97889464..97889494,+!p3@ZNF518A!0.95!15.25!ZNF518A;;chr13:73636252..73636307,+!p2@KLF5!0.95!9.39!KLF5;;chr1:6479968..6479986,-!p1@HES2!0.95!7.82!HES2;;chr14:75745523..75745537,+!p1@FOS!0.94!955.66!FOS;;chr17:4981745..4981810,+!p1@ZFP3!0.94!39.50!ZFP3;;chr19:20188776..20188826,+!p1@ZNF90!0.92!20.34!ZNF90;;chr2:231084820..231084836,-!p5@SP110!0.92!8.41!SP110;;chr9:126774018..126774055,+!p1@LHX2!0.92!7.24!LHX2;;chr1:164528384..164528409,+!p3@PBX1!0.91!23.27!PBX1;;chr1:41827095..41827155,+!p1@FOXO6!0.91!9.78!FOXO6;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr5:142780189..142780223,-!p6@NR3C1!0.91!7.04!NR3C1;;chr2:214015343..214015366,-!p3@IKZF2!0.91!7.04!IKZF2;;chr14:37131058..37131139,+!p1@PAX9!0.91!7.04!PAX9;;chr20:50159198..50159299,-!p1@NFATC2!0.89!9.97!NFATC2;;chr19:24097706..24097731,+!p2@ZNF726!0.88!12.91!ZNF726;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.65!OVOL2;;chr5:142780237..142780261,-!p7@NR3C1!0.88!6.65!NR3C1;;chr3:101575889..101575903,+!p3@NFKBIZ!0.88!6.65!NFKBIZ;;chr3:181429704..181429722,+!p1@SOX2!0.88!6.65!SOX2;;chr19:57183114..57183145,-!p1@ZNF835!0.87!7.24!ZNF835;;chr20:50418128..50418147,-!p2@SALL4!0.87!6.45!SALL4;;chr3:147111198..147111225,+!p4@ZIC1!0.87!6.45!ZIC1;;chrX:131623044..131623089,-!p1@MBNL3!0.86!27.38!MBNL3;;chr19:52839515..52839572,+!p1@ZNF610!0.86!14.08!ZNF610;;chr2:121493492..121493537,+!p2@GLI2!0.86!10.56!GLI2;;chr17:46667594..46667619,-!p1@HOXB3!0.86!6.26!HOXB3;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.86!6.26!ZNF676;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.26!OVOL1;;chr14:24630902..24630948,+!p2@IRF9!0.85!7.43!IRF9;;chr14:38064590..38064606,-!p2@FOXA1!0.85!6.06!FOXA1;;chr3:101575172..101575195,+!p5@NFKBIZ!0.85!6.06!NFKBIZ;;chr12:53625966..53626012,-!p2@RARG!0.84!16.43!RARG;;chr1:164528687..164528711,+!p6@PBX1!0.84!7.04!PBX1;;chr1:24646002..24646013,+!p3@GRHL3!0.84!5.87!GRHL3;;chr20:42295745..42295765,+!p1@MYBL2!0.83!100.90!MYBL2;;chr2:71127699..71127744,+!p1@VAX2!0.83!12.32!VAX2;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.04!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.83!6.84!MECOM;;chr19:53758058..53758088,-!p2@ZNF677!0.82!19.56!ZNF677;;chr13:73636516..73636532,+!p3@KLF5!0.82!6.45!KLF5;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.82!5.67!HOXC5;;chr2:16080635..16080650,+!p4@MYCN!0.82!5.67!MYCN;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.82!HOXB7;;chr6:36355513..36355578,-!p2@ETV7!0.81!7.04!ETV7;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.48!HOXA3;;chr14:37051798..37051831,-!p1@NKX2-8!0.81!5.48!NKX2-8;;chr3:128207349..128207386,-!p3@GATA2!0.81!5.48!GATA2;;chr12:80084737..80084763,-!p3@PAWR!0.80!21.12!PAWR;;chr19:48774586..48774670,+!p1@ZNF114!0.80!6.84!ZNF114;;chr1:42801540..42801562,-!p4@FOXJ3!0.80!5.28!FOXJ3;;chr20:55205825..55205847,+!p2@TFAP2C!0.80!5.28!TFAP2C;;chr6:126240490..126240501,+!p11@NCOA7!0.80!5.28!NCOA7;;chr3:181429741..181429767,+!p2@SOX2!0.80!5.28!SOX2;;chr19:24097675..24097699,+!p1@ZNF726!0.79!18.38!ZNF726;;chr15:41913690..41913753,+!p2@MGA!0.79!13.30!MGA;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.84!SKIL;;chr19:58326246..58326262,-!p2@ZNF552!0.78!12.71!ZNF552;;chr2:121493425..121493474,+!p1@GLI2!0.78!11.73!GLI2;;chr1:164528588..164528610,+!p8@PBX1!0.78!8.02!PBX1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.77!281.40!NFKBIZ;;chr9:99180617..99180658,-!p1@ZNF367!0.77!11.34!ZNF367;;chrX:107018969..107019024,-!p6@TSC22D3!0.77!7.04!TSC22D3;;chr21:38071430..38071456,+!p1@SIM2!0.77!4.89!SIM2;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.89!GATA4;;chr1:153939955..153940009,+!p2@CREB3L4!0.76!11.73!CREB3L4;;chr3:24536253..24536328,-!p1@THRB!0.76!9.39!THRB;;chr2:122042770..122042785,-!p1@TFCP2L1!0.76!4.69!TFCP2L1;;chr2:238592039..238592054,+!p4@LRRFIP1!0.76!4.69!LRRFIP1;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.69!ZIC1;;chr1:50889103..50889145,-!p1@DMRTA2!0.76!4.69!DMRTA2;;chr11:31832658..31832681,-!p1@PAX6!0.76!4.69!PAX6;;chr12:54332652..54332671,+!p2@HOXC13!0.76!4.69!HOXC13;;chr6:126240542..126240553,+!p14@NCOA7!0.76!4.69!NCOA7;;chr1:164528340..164528379,+!p4@PBX1!0.75!12.32!PBX1;;chr20:45142154..45142227,-!p1@ZNF334!0.75!9.78!ZNF334;;chr19:22235279..22235301,+!p1@ZNF257!0.75!9.19!ZNF257;;chr19:38042240..38042309,+!p2@ZNF540!0.75!7.43!ZNF540;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.72!MYBL2;;chr1:247171316..247171336,-!p3@ZNF695!0.74!7.04!ZNF695;;chr1:151804244..151804310,-!p1@RORC!0.74!4.50!RORC;;chr16:85932760..85932775,+!p1@IRF8!0.74!4.50!IRF8;;chr19:44952635..44952668,-!p1@ZNF229!0.72!23.47!ZNF229;;chr19:53360870..53360873,-!p1@ZNF468!0.72!17.40!ZNF468;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.04!ZFP64;;chr1:2461692..2461710,-!p1@HES5!0.72!4.30!HES5;;chr1:24645832..24645853,+!p1@GRHL3!0.72!4.30!GRHL3;;chr1:3569072..3569093,+!p1@TP73!0.72!4.30!TP73;;chr5:172662197..172662216,-!p1@NKX2-5!0.72!4.30!NKX2-5;;chr6:10419824..10419840,-!p9@TFAP2A!0.72!4.30!TFAP2A;;chr3:40547564..40547616,+!p1@ZNF620!0.71!6.06!ZNF620;;chr11:62369806..62369837,-!p8@MTA2!0.71!5.48!MTA2;;chr10:23481233..23481249,+!p1@PTF1A!0.71!4.11!PTF1A;;chr11:65554563..65554576,+!p2@OVOL1!0.71!4.11!OVOL1;;chr12:54348702..54348715,+!p2@HOXC12!0.71!4.11!HOXC12;;chr14:36989940..36989957,-!p2@NKX2-1!0.71!4.11!NKX2-1;;chr4:8873545..8873583,-!p1@HMX1!0.71!4.11!HMX1;;chr8:102504979..102505010,+!p2@GRHL2!0.71!4.11!GRHL2;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.11!SIX2;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.41!TCF19;;chr6:21597514..21597578,+!p4@SOX4!0.70!7.24!SOX4;;chrX:129244840..129244881,-!p2@ELF4!0.69!16.82!ELF4;;chr19:53636125..53636178,-!p1@ZNF415!0.69!12.12!ZNF415;;chr19:20150268..20150298,-!p2@ZNF682!0.69!8.02!ZNF682;;chr19:37997812..37997866,+!p1@ZNF793!0.69!7.04!ZNF793;;chr16:54320158..54320200,-!p5@IRX3!0.69!5.87!IRX3;;chr2:191878812..191878823,-!p2@STAT1!0.69!5.08!STAT1;;chr22:24093154..24093183,-!p2@ZNF70!0.69!3.91!ZNF70;;chr2:63277948..63277974,+!p1@OTX1!0.69!3.91!OTX1;;chr9:100616439..100616476,+!p3@FOXE1!0.69!3.91!FOXE1;;chr12:54332608..54332636,+!p1@HOXC13!0.69!3.91!HOXC13;;chr13:73636310..73636330,+!p5@KLF5!0.69!3.91!KLF5;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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC14TKB.CNhs11256.10470-106I2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10470-106I2
 |is_a=CL:1000415;;EFO:0002091;;FF:0000210;;FF:0100297
 |is_obsolete=
+|library_id=CNhs11256
+|library_id_phase_based=2:CNhs11256
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10470
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10470
 |name=gall bladder carcinoma cell line:TGBC14TKB
 |namespace=FANTOM5
@@ Line 43: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11256,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 58: / Line 77: @@
 |rna_weight_ug=59.78775
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB1186
 |sample_cell_line=TGBC14TKB
@@ Line 79: / Line 99: @@
 |top_motifs=SNAI1..3:2.22120353154;ZEB1:1.86001396966;LMO2:1.79188260922;PITX1..3:1.79019404893;FOXQ1:1.70907573582;HOX{A6,A7,B6,B7}:1.68003878907;STAT1,3:1.6273791309;IRF7:1.60474538523;ZNF384:1.49226191444;E2F1..5:1.47558735266;FOXL1:1.45662552213;NKX2-3_NKX2-5:1.40482923189;NFY{A,B,C}:1.35887815356;XCPE1{core}:1.29917739316;TEF:1.28226466195;ZBTB16:1.26883090327;CDC5L:1.24588938401;TFDP1:1.14586032772;POU2F1..3:1.03488356771;SP1:1.01682452928;MYOD1:1.0067427355;TEAD1:1.00168584339;NKX6-1,2:0.989903751639;PAX1,9:0.988270872125;FOXD3:0.969478246211;NKX2-1,4:0.904749658281;FOXM1:0.903774436216;EVI1:0.891103334038;LHX3,4:0.871884211067;STAT5{A,B}:0.858344501973;RBPJ:0.851017270892;EP300:0.847721252816;NRF1:0.831195752007;PAX4:0.830651591536;RORA:0.82790415798;FOXP1:0.827506908906;FOXN1:0.819951556065;LEF1_TCF7_TCF7L1,2:0.778754444596;ELK1,4_GABP{A,B1}:0.758342252481;IRF1,2:0.753091972984;ZNF148:0.752888746689;PDX1:0.667270811225;ONECUT1,2:0.633478667769;GFI1:0.586233421427;ZNF143:0.578029735917;RFX2..5_RFXANK_RFXAP:0.530205173176;IKZF2:0.518203123452;FOX{I1,J2}:0.512277101966;HMGA1,2:0.511932698033;RFX1:0.505618388898;CDX1,2,4:0.462238103157;SOX{8,9,10}:0.460493785471;NR6A1:0.44761727899;AIRE:0.447140403288;HOXA9_MEIS1:0.422265812071;DBP:0.413892601168;TBX4,5:0.37847097059;VSX1,2:0.367765350128;HNF1A:0.344552083323;ADNP_IRX_SIX_ZHX:0.306534434155;FOXO1,3,4:0.298605823724;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282209057789;FOX{D1,D2}:0.280849134512;PAX8:0.274146220429;RREB1:0.265616375823;TAL1_TCF{3,4,12}:0.245677807756;PAX5:0.205649363392;PBX1:0.19701514668;MTF1:0.195326531332;TFAP2{A,C}:0.130222891213;MED-1{core}:0.127282391168;TOPORS:0.124811240292;GZF1:0.11939590837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.107173953635;BREu{core}:0.102153752525;HOX{A4,D4}:0.100580868638;ZNF423:0.096422288613;MTE{core}:0.0949548458551;HNF4A_NR2F1,2:0.0801982488239;ARID5B:0.0516888797497;ZFP161:0.0365888444006;MYB:0.0320930767077;TFAP2B:0.00706132942081;ATF4:0.0037897731093;BPTF:0.00117242841381;NKX3-1:-0.0315615209672;POU1F1:-0.039083088081;CUX2:-0.0675889736445;HBP1_HMGB_SSRP1_UBTF:-0.0708899075429;PAX3,7:-0.0730258742859;NFE2L2:-0.0737783806579;FOXA2:-0.088553760859;OCT4_SOX2{dimer}:-0.098194003611;PRRX1,2:-0.115158531196;IKZF1:-0.156579762819;MEF2{A,B,C,D}:-0.161107730942;ATF2:-0.168230192766;TP53:-0.171264145619;TBP:-0.172474089474;YY1:-0.177093504251;SOX5:-0.179544413917;HIF1A:-0.179570217296;T:-0.181512206751;ALX4:-0.192201642312;TLX1..3_NFIC{dimer}:-0.193378546636;STAT2,4,6:-0.196646078762;KLF4:-0.204723203457;bHLH_family:-0.20899979715;UFEwm:-0.218570054634;FOS_FOS{B,L1}_JUN{B,D}:-0.221297640762;ZBTB6:-0.226474836958;SOX2:-0.226756069413;HSF1,2:-0.234536595581;PRDM1:-0.245705363886;ATF5_CREB3:-0.251328576492;FOXP3:-0.262347793027;PATZ1:-0.262491884265;EBF1:-0.265969022878;ESR1:-0.278584462699;POU5F1:-0.282125017381;MYBL2:-0.291406246342;NKX3-2:-0.291791625368;JUN:-0.306982274885;FOSL2:-0.308213613408;NFKB1_REL_RELA:-0.318351527615;REST:-0.322240118323;NFIX:-0.333718741561;ELF1,2,4:-0.334490772659;HIC1:-0.357549941556;GATA4:-0.35926125027;MAZ:-0.366639166119;ESRRA:-0.37097540886;HAND1,2:-0.378244075014;BACH2:-0.379232470467;EN1,2:-0.391352806334;TFAP4:-0.393963558033;CREB1:-0.426723692931;NR1H4:-0.448687595049;GTF2I:-0.460083186138;GLI1..3:-0.469096697959;GCM1,2:-0.487865545387;GATA6:-0.52453158627;PPARG:-0.541616549906;NFIL3:-0.562983035943;DMAP1_NCOR{1,2}_SMARC:-0.571011534276;ZIC1..3:-0.57147076715;HLF:-0.578908329348;CEBPA,B_DDIT3:-0.579648499782;SPIB:-0.583732674113;NR5A1,2:-0.586372038117;NFE2:-0.58981526833;ALX1:-0.600678922106;AR:-0.615031228207;TFCP2:-0.615555738216;SREBF1,2:-0.619248590516;RXRA_VDR{dimer}:-0.62744170939;HOX{A5,B5}:-0.633323821004;HES1:-0.639819333418;CRX:-0.666171825536;SRF:-0.669526506705;TLX2:-0.673392940566;PAX2:-0.680091826182;EGR1..3:-0.730371462997;SOX17:-0.734952112022;NANOG:-0.741562719041;SPI1:-0.74686620387;ETS1,2:-0.75596835585;TGIF1:-0.794862028964;MZF1:-0.803767064998;FOX{F1,F2,J1}:-0.848766476443;MYFfamily:-0.870840505459;SPZ1:-0.887243619195;NHLH1,2:-0.893119929448;RUNX1..3:-0.909653565417;GFI1B:-0.914267766526;MAFB:-0.965144749969;POU6F1:-1.01001029466;NFE2L1:-1.0100633765;AHR_ARNT_ARNT2:-1.01477418024;GTF2A1,2:-1.02051304809;ATF6:-1.1402303813;RXR{A,B,G}:-1.17230778248;POU3F1..4:-1.18070064095;NR3C1:-1.19243993398;NKX2-2,8:-1.33016381443;PAX6:-1.35082586387;XBP1:-1.41814537024;ZNF238:-1.66861534056;HMX1:-2.01018337396;NFATC1..3:-2.04340242309;NANOG{mouse}:-2.24697790537;SMAD1..7,9:-2.51377167375
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10470-106I2;search_select_hide=table117:FF:10470-106I2
 }}

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FF:10470-106I2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0