FF:10721-110A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005185 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005185 | |||
|accession_numbers=CAGE;DRX007914;DRR008786;DRZ000211;DRZ001596;DRZ011561;DRZ012946 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057137;DRR062896;DRZ007972 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:7 | |ancestors_in_disease_facet=DOID:4,DOID:7 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192,FF:0100678 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!1.83!66.62!HAND1;;chr12:54694758..54694805,-!p1@NFE2!1.78!70.69!NFE2;;chr15:42749722..42749739,-!p2@ZFP106!1.73!92.30!ZFP106;;chr18:6414884..6414942,-!p1@L3MBTL4!1.68!57.72!L3MBTL4;;chr1:170633348..170633399,+!p2@PRRX1!1.66!59.75!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.94!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.55!91.28!OSR1;;chr9:4117869..4117882,-!p12@GLIS3!1.54!33.31!GLIS3;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.77!PRRX1;;chr10:114889016..114889037,+!p15@TCF7L2!1.48!29.24!TCF7L2;;chr10:114889045..114889074,+!p12@TCF7L2!1.47!28.22!TCF7L2;;chr17:41739283..41739297,-!p1@MEOX1!1.43!25.68!MEOX1;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.73!PRRX1;;chr9:4300050..4300118,-!p1@GLIS3!1.41!154.34!GLIS3;;chr5:137804405..137804444,+!p3@EGR1!1.40!28.99!EGR1;;chr10:119302645..119302712,+!p3@EMX2!1.38!23.14!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.38!23.14!HOXC9;;chr15:96869255..96869291,+!p6@NR2F2!1.37!40.17!NR2F2;;chr12:54694807..54694832,-!p3@NFE2!1.37!22.63!NFE2;;chr22:19748231..19748317,+!p1@TBX1!1.35!21.61!TBX1;;chr2:66662797..66662818,+!p10@MEIS1!1.30!18.82!MEIS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.82!HOXC5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.56!ZBED1;;chr10:119303078..119303169,+!p2@EMX2!1.29!18.31!EMX2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.39!NR2F2;;chr17:8027418..8027432,-!p1@HES7!1.23!16.02!HES7;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.26!HOXC8;;chr2:66666432..66666462,+!p7@MEIS1!1.19!14.49!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!1.18!14.24!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.48!PRRX1;;chr4:54966328..54966335,+!p1@GSX2!1.15!13.22!GSX2;;chr15:96880438..96880445,+!p23@NR2F2!1.15!13.22!NR2F2;;chr18:6414849..6414876,-!p2@L3MBTL4!1.15!12.97!L3MBTL4;;chr2:121493492..121493537,+!p2@GLI2!1.14!21.10!GLI2;;chr6:19837592..19837621,+!p1@ID4!1.13!77.04!ID4;;chr5:137801160..137801176,+!p1@EGR1!1.10!1135.82!EGR1;;chr16:73093174..73093209,-!p3@ZFHX3!1.10!15.76!ZFHX3;;chr15:96869222..96869251,+!p18@NR2F2!1.09!13.22!NR2F2;;chr12:3068634..3068656,+!p5@TEAD4!1.09!11.44!TEAD4;;chr1:170632439..170632465,+!p11@PRRX1!1.09!11.19!PRRX1;;chr5:137804357..137804390,+!p4@EGR1!1.08!12.97!EGR1;;chr10:114886405..114886424,+!p26@TCF7L2!1.06!10.43!TCF7L2;;chr12:54785054..54785072,-!p4@ZNF385A!1.04!11.44!ZNF385A;;chr2:121493425..121493474,+!p1@GLI2!1.03!21.61!GLI2;;chr15:96869114..96869160,+!p11@NR2F2!1.03!13.22!NR2F2;;chr10:119302232..119302265,+!p1@EMX2!1.03!9.66!EMX2;;chr12:54694653..54694672,-!p2@NFE2!1.03!9.66!NFE2;;chr12:54772960..54773015,-!p3@ZNF385A!1.02!46.79!ZNF385A;;chr15:96874244..96874259,+!p5@NR2F2!1.02!23.14!NR2F2;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.75!ZNF385A;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.32!DNMT3B;;chr8:99956662..99956684,+!p1@OSR2!1.01!14.24!OSR2;;chr1:23885981..23886002,-!p1@ID3!0.99!1551.29!ID3;;chr15:96869292..96869320,+!p15@NR2F2!0.98!12.46!NR2F2;;chr10:114886551..114886601,+!p11@TCF7L2!0.98!8.65!TCF7L2;;chr2:66662281..66662308,+!p1@MEIS1!0.97!29.24!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.96!17.04!VAX2;;chr19:45971246..45971265,+!p1@FOSB!0.95!151.29!FOSB;;chr11:63684602..63684664,-!p1@RCOR2!0.95!16.02!RCOR2;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.22!SOX4;;chr15:96874145..96874166,+!p7@NR2F2!0.94!15.26!NR2F2;;chr19:22817119..22817145,+!p1@ZNF492!0.94!13.22!ZNF492;;chr7:63505799..63505904,+!p1@ZNF727!0.94!7.63!ZNF727;;chr15:96874012..96874042,+!p2@NR2F2!0.93!70.69!NR2F2;;chr10:114710098..114710130,+!p2@TCF7L2!0.93!58.23!TCF7L2;;chr16:29818199..29818216,+!p11@MAZ!0.93!12.46!MAZ;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.90!E2F2;;chr15:96874216..96874236,+!p13@NR2F2!0.92!11.44!NR2F2;;chr8:67525443..67525459,-!p2@MYBL1!0.92!11.19!MYBL1;;chr10:114886387..114886398,+!p36@TCF7L2!0.92!7.37!TCF7L2;;chr10:114886432..114886455,+!p20@TCF7L2!0.92!7.37!TCF7L2;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.37!PRRX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.91!7.12!SEBOX;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.63!PRRX1;;chr1:40367668..40367684,-!p2@MYCL1!0.90!6.87!MYCL1;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.70!SOX9;;chr15:96869165..96869183,+!p20@NR2F2!0.88!6.61!NR2F2;;chr12:3068668..3068689,+!p7@TEAD4!0.88!6.61!TEAD4;;chr1:935467..935484,-!p1@HES4!0.87!29.75!HES4;;chr10:119302268..119302282,+!p4@EMX2!0.87!6.36!EMX2;;chr12:57853634..57853662,+!p2@GLI1!0.87!6.36!GLI1;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.88!MEIS1;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.38!NR4A1;;chr9:4299979..4299996,-!p3@GLIS3!0.85!10.17!GLIS3;;chr10:119302508..119302559,+!p5@EMX2!0.85!6.10!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.10!HOXC5;;chr12:54402790..54402805,+!p2@HOXC8!0.84!5.85!HOXC8;;chr2:66662510..66662521,+!p6@MEIS1!0.84!5.85!MEIS1;;chr9:4300016..4300039,-!p2@GLIS3!0.83!10.17!GLIS3;;chr10:70320074..70320106,+!p1@TET1!0.82!11.95!TET1;;chr14:75745523..75745537,+!p1@FOS!0.81!710.17!FOS;;chr12:3068544..3068597,+!p1@TEAD4!0.81!35.34!TEAD4;;chr8:128748308..128748324,+!p2@MYC!0.80!161.71!MYC;;chr1:151032860..151032918,+!p1@MLLT11!0.80!67.89!MLLT11;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.12!EGR1;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.70!SMARCD3;;chr6:43140095..43140145,+!p5@SRF!0.79!6.61!SRF;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.85!ISL2;;chr22:19746969..19746987,+!p2@TBX1!0.78!5.09!TBX1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.41!MYCL1;;chr3:52001448..52001478,-!p2@PCBP4!0.76!73.74!PCBP4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.67!MYBL2;;chr7:74072135..74072171,+!p2@GTF2I!0.75!15.76!GTF2I;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.14!MLLT11;;chr9:14314476..14314487,-!p9@NFIB!0.75!4.58!NFIB;;chr6:21593973..21593988,+!p1@SOX4!0.74!182.31!SOX4;;chr7:150974206..150974255,-!p1@SMARCD3!0.74!31.02!SMARCD3;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.10!TEAD1;;chr7:149470641..149470694,-!p1@ZNF467!0.73!21.87!ZNF467;;chr20:50179368..50179392,-!p2@NFATC2!0.73!5.85!NFATC2;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.32!PRRX1;;chr1:26496459..26496470,+!p2@ZNF593!0.72!8.65!ZNF593;;chr1:23857698..23857733,-!p1@E2F2!0.72!8.39!E2F2;;chr16:73092791..73092831,-!p4@ZFHX3!0.72!8.14!ZFHX3;;chr9:4299959..4299974,-!p4@GLIS3!0.72!7.12!GLIS3;;chr19:49864746..49864780,-!p2@TEAD2!0.72!6.10!TEAD2;;chr5:138609782..138609826,+!p5@MATR3!0.71!29.75!MATR3;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.46!MYBL2;;chr2:121493717..121493755,+!p3@GLI2!0.71!4.58!GLI2;;chr12:2986206..2986258,-!p2@FOXM1!0.70!27.21!FOXM1;;chr1:8763296..8763339,-!p9@RERE!0.70!10.68!RERE;;chr12:54694738..54694749,-!p5@NFE2!0.70!4.07!NFE2;;chr17:42295682..42295731,-!p17@UBTF!0.70!4.07!UBTF;;chr8:49833948..49833973,-!p2@SNAI2!0.69!27.97!SNAI2;;chr9:3525910..3525955,-!p4@RFX3!0.69!12.97!RFX3;;chr10:44070016..44070069,-!p1@ZNF239!0.68!12.71!ZNF239;;chr12:80084167..80084197,-!p5@PAWR!0.68!9.66!PAWR;;chr2:19558327..19558334,-!p2@OSR1!0.68!3.81!OSR1;;chr2:42721205..42721307,+!p4@MTA3!0.68!3.81!MTA3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.68!3.81!SEBOX;;chr12:77459306..77459365,-!p1@E2F7!0.67!52.89!E2F7;;chr15:96874063..96874074,+!p10@NR2F2!0.67!7.37!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.44!PCBP4;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.56!HEYL;;chr20:25062773..25062779,-!p3@VSX1!0.66!3.56!VSX1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.66!3.56!LHX1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.65!420.31!ZFP36L1;;chr15:96873921..96873946,+!p1@NR2F2!0.65!115.18!NR2F2;;chr8:103667935..103667960,-!p1@KLF10!0.64!177.99!KLF10;;chr20:306489..306564,+!p1@SOX12!0.64!42.72!SOX12;;chr4:121843844..121843904,-!p1@PRDM5!0.63!8.65!PRDM5;;chr1:247171347..247171366,-!p2@ZNF695!0.63!6.61!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.63!4.07!POU2F3;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.31!HOXC8;;chr10:114709999..114710031,+!p1@TCF7L2!0.62!91.03!TCF7L2;;chr19:49865646..49865718,-!p1@TEAD2!0.62!32.29!TEAD2;;chr2:157189180..157189290,-!p1@NR4A2!0.62!19.32!NR4A2;;chr1:205600919..205600982,-!p3@ELK4!0.62!13.73!ELK4;;chr9:14314522..14314556,-!p3@NFIB!0.62!8.39!NFIB;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.66!MXD3;;chr17:41277372..41277418,-!p1@BRCA1!0.61!12.97!BRCA1;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.88!MYBL1;;chr1:935398..935465,-!p2@HES4!0.61!7.12!HES4;;chr9:14314106..14314119,-!p5@NFIB!0.61!6.10!NFIB;;chr17:42297092..42297112,-!p11@UBTF!0.61!5.34!UBTF;;chr15:96869206..96869220,+!p21@NR2F2!0.61!3.05!NR2F2;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.05!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.05!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.05!PRRX1;;chr14:21566731..21566836,-!p1@ZNF219!0.60!38.39!ZNF219;;chr19:12721790..12721810,+!p2@ZNF791!0.60!9.41!ZNF791;;chr11:46299539..46299620,+!p2@CREB3L1!0.60!5.59!CREB3L1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.60!4.58!TGIF2;;chr10:3827371..3827386,-!p2@KLF6!0.59!29.75!KLF6;;chr19:57183114..57183145,-!p1@ZNF835!0.59!3.31!ZNF835;;chr6:21597765..21597779,+!p2@SOX4!0.58!27.46!SOX4;;chr9:14314131..14314147,-!p2@NFIB!0.58!18.82!NFIB;;chr12:7079780..7079791,-!p2@PHB2!0.58!17.54!PHB2;;chr17:42298615..42298692,-!p2@UBTF!0.58!17.29!UBTF;;chr6:43140149..43140177,+!p8@SRF!0.58!3.05!SRF;;chr12:54402694..54402705,+!p5@HOXC8!0.58!2.80!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.80!HOXC5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.58!2.80!ZSCAN1;;chr1:40105347..40105358,-!p2@HEYL!0.58!2.80!HEYL;;chrX:129402768..129402796,-!p2@ZNF280C!0.57!9.92!ZNF280C;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.41!MAZ;;chr1:33721900..33721921,+!p2@ZNF362!0.57!7.63!ZNF362;;chr11:12696002..12696022,+!p2@TEAD1!0.57!7.63!TEAD1;;chr7:149470540..149470596,-!p2@ZNF467!0.57!3.81!ZNF467;;chr1:90460661..90460745,+!p1@ZNF326!0.56!93.06!ZNF326;;chr7:74072021..74072119,+!p1@GTF2I!0.56!86.20!GTF2I;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.65!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.56!16.78!CREB3L1;;chr12:53625966..53626012,-!p2@RARG!0.56!8.14!RARG;;chr20:62462566..62462631,-!p1@ZBTB46!0.56!5.59!ZBTB46;;chr19:58373157..5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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!1.83!66.62!HAND1;;chr12:54694758..54694805,-!p1@NFE2!1.78!70.69!NFE2;;chr15:42749722..42749739,-!p2@ZFP106!1.73!92.30!ZFP106;;chr18:6414884..6414942,-!p1@L3MBTL4!1.68!57.72!L3MBTL4;;chr1:170633348..170633399,+!p2@PRRX1!1.66!59.75!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.94!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.55!91.28!OSR1;;chr9:4117869..4117882,-!p12@GLIS3!1.54!33.31!GLIS3;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.77!PRRX1;;chr10:114889016..114889037,+!p15@TCF7L2!1.48!29.24!TCF7L2;;chr10:114889045..114889074,+!p12@TCF7L2!1.47!28.22!TCF7L2;;chr17:41739283..41739297,-!p1@MEOX1!1.43!25.68!MEOX1;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.73!PRRX1;;chr9:4300050..4300118,-!p1@GLIS3!1.41!154.34!GLIS3;;chr5:137804405..137804444,+!p3@EGR1!1.40!28.99!EGR1;;chr10:119302645..119302712,+!p3@EMX2!1.38!23.14!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.38!23.14!HOXC9;;chr15:96869255..96869291,+!p6@NR2F2!1.37!40.17!NR2F2;;chr12:54694807..54694832,-!p3@NFE2!1.37!22.63!NFE2;;chr22:19748231..19748317,+!p1@TBX1!1.35!21.61!TBX1;;chr2:66662797..66662818,+!p10@MEIS1!1.30!18.82!MEIS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.82!HOXC5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.56!ZBED1;;chr10:119303078..119303169,+!p2@EMX2!1.29!18.31!EMX2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.39!NR2F2;;chr17:8027418..8027432,-!p1@HES7!1.23!16.02!HES7;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.26!HOXC8;;chr2:66666432..66666462,+!p7@MEIS1!1.19!14.49!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!1.18!14.24!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.48!PRRX1;;chr4:54966328..54966335,+!p1@GSX2!1.15!13.22!GSX2;;chr15:96880438..96880445,+!p23@NR2F2!1.15!13.22!NR2F2;;chr18:6414849..6414876,-!p2@L3MBTL4!1.15!12.97!L3MBTL4;;chr2:121493492..121493537,+!p2@GLI2!1.14!21.10!GLI2;;chr6:19837592..19837621,+!p1@ID4!1.13!77.04!ID4;;chr5:137801160..137801176,+!p1@EGR1!1.10!1135.82!EGR1;;chr16:73093174..73093209,-!p3@ZFHX3!1.10!15.76!ZFHX3;;chr15:96869222..96869251,+!p18@NR2F2!1.09!13.22!NR2F2;;chr12:3068634..3068656,+!p5@TEAD4!1.09!11.44!TEAD4;;chr1:170632439..170632465,+!p11@PRRX1!1.09!11.19!PRRX1;;chr5:137804357..137804390,+!p4@EGR1!1.08!12.97!EGR1;;chr10:114886405..114886424,+!p26@TCF7L2!1.06!10.43!TCF7L2;;chr12:54785054..54785072,-!p4@ZNF385A!1.04!11.44!ZNF385A;;chr2:121493425..121493474,+!p1@GLI2!1.03!21.61!GLI2;;chr15:96869114..96869160,+!p11@NR2F2!1.03!13.22!NR2F2;;chr10:119302232..119302265,+!p1@EMX2!1.03!9.66!EMX2;;chr12:54694653..54694672,-!p2@NFE2!1.03!9.66!NFE2;;chr12:54772960..54773015,-!p3@ZNF385A!1.02!46.79!ZNF385A;;chr15:96874244..96874259,+!p5@NR2F2!1.02!23.14!NR2F2;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.75!ZNF385A;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.32!DNMT3B;;chr8:99956662..99956684,+!p1@OSR2!1.01!14.24!OSR2;;chr1:23885981..23886002,-!p1@ID3!0.99!1551.29!ID3;;chr15:96869292..96869320,+!p15@NR2F2!0.98!12.46!NR2F2;;chr10:114886551..114886601,+!p11@TCF7L2!0.98!8.65!TCF7L2;;chr2:66662281..66662308,+!p1@MEIS1!0.97!29.24!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.96!17.04!VAX2;;chr19:45971246..45971265,+!p1@FOSB!0.95!151.29!FOSB;;chr11:63684602..63684664,-!p1@RCOR2!0.95!16.02!RCOR2;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.22!SOX4;;chr15:96874145..96874166,+!p7@NR2F2!0.94!15.26!NR2F2;;chr19:22817119..22817145,+!p1@ZNF492!0.94!13.22!ZNF492;;chr7:63505799..63505904,+!p1@ZNF727!0.94!7.63!ZNF727;;chr15:96874012..96874042,+!p2@NR2F2!0.93!70.69!NR2F2;;chr10:114710098..114710130,+!p2@TCF7L2!0.93!58.23!TCF7L2;;chr16:29818199..29818216,+!p11@MAZ!0.93!12.46!MAZ;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.90!E2F2;;chr15:96874216..96874236,+!p13@NR2F2!0.92!11.44!NR2F2;;chr8:67525443..67525459,-!p2@MYBL1!0.92!11.19!MYBL1;;chr10:114886387..114886398,+!p36@TCF7L2!0.92!7.37!TCF7L2;;chr10:114886432..114886455,+!p20@TCF7L2!0.92!7.37!TCF7L2;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.37!PRRX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.91!7.12!SEBOX;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.63!PRRX1;;chr1:40367668..40367684,-!p2@MYCL1!0.90!6.87!MYCL1;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.70!SOX9;;chr15:96869165..96869183,+!p20@NR2F2!0.88!6.61!NR2F2;;chr12:3068668..3068689,+!p7@TEAD4!0.88!6.61!TEAD4;;chr1:935467..935484,-!p1@HES4!0.87!29.75!HES4;;chr10:119302268..119302282,+!p4@EMX2!0.87!6.36!EMX2;;chr12:57853634..57853662,+!p2@GLI1!0.87!6.36!GLI1;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.88!MEIS1;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.38!NR4A1;;chr9:4299979..4299996,-!p3@GLIS3!0.85!10.17!GLIS3;;chr10:119302508..119302559,+!p5@EMX2!0.85!6.10!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.10!HOXC5;;chr12:54402790..54402805,+!p2@HOXC8!0.84!5.85!HOXC8;;chr2:66662510..66662521,+!p6@MEIS1!0.84!5.85!MEIS1;;chr9:4300016..4300039,-!p2@GLIS3!0.83!10.17!GLIS3;;chr10:70320074..70320106,+!p1@TET1!0.82!11.95!TET1;;chr14:75745523..75745537,+!p1@FOS!0.81!710.17!FOS;;chr12:3068544..3068597,+!p1@TEAD4!0.81!35.34!TEAD4;;chr8:128748308..128748324,+!p2@MYC!0.80!161.71!MYC;;chr1:151032860..151032918,+!p1@MLLT11!0.80!67.89!MLLT11;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.12!EGR1;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.70!SMARCD3;;chr6:43140095..43140145,+!p5@SRF!0.79!6.61!SRF;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.85!ISL2;;chr22:19746969..19746987,+!p2@TBX1!0.78!5.09!TBX1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.41!MYCL1;;chr3:52001448..52001478,-!p2@PCBP4!0.76!73.74!PCBP4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.67!MYBL2;;chr7:74072135..74072171,+!p2@GTF2I!0.75!15.76!GTF2I;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.14!MLLT11;;chr9:14314476..14314487,-!p9@NFIB!0.75!4.58!NFIB;;chr6:21593973..21593988,+!p1@SOX4!0.74!182.31!SOX4;;chr7:150974206..150974255,-!p1@SMARCD3!0.74!31.02!SMARCD3;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.10!TEAD1;;chr7:149470641..149470694,-!p1@ZNF467!0.73!21.87!ZNF467;;chr20:50179368..50179392,-!p2@NFATC2!0.73!5.85!NFATC2;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.32!PRRX1;;chr1:26496459..26496470,+!p2@ZNF593!0.72!8.65!ZNF593;;chr1:23857698..23857733,-!p1@E2F2!0.72!8.39!E2F2;;chr16:73092791..73092831,-!p4@ZFHX3!0.72!8.14!ZFHX3;;chr9:4299959..4299974,-!p4@GLIS3!0.72!7.12!GLIS3;;chr19:49864746..49864780,-!p2@TEAD2!0.72!6.10!TEAD2;;chr5:138609782..138609826,+!p5@MATR3!0.71!29.75!MATR3;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.46!MYBL2;;chr2:121493717..121493755,+!p3@GLI2!0.71!4.58!GLI2;;chr12:2986206..2986258,-!p2@FOXM1!0.70!27.21!FOXM1;;chr1:8763296..8763339,-!p9@RERE!0.70!10.68!RERE;;chr12:54694738..54694749,-!p5@NFE2!0.70!4.07!NFE2;;chr17:42295682..42295731,-!p17@UBTF!0.70!4.07!UBTF;;chr8:49833948..49833973,-!p2@SNAI2!0.69!27.97!SNAI2;;chr9:3525910..3525955,-!p4@RFX3!0.69!12.97!RFX3;;chr10:44070016..44070069,-!p1@ZNF239!0.68!12.71!ZNF239;;chr12:80084167..80084197,-!p5@PAWR!0.68!9.66!PAWR;;chr2:19558327..19558334,-!p2@OSR1!0.68!3.81!OSR1;;chr2:42721205..42721307,+!p4@MTA3!0.68!3.81!MTA3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.68!3.81!SEBOX;;chr12:77459306..77459365,-!p1@E2F7!0.67!52.89!E2F7;;chr15:96874063..96874074,+!p10@NR2F2!0.67!7.37!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.44!PCBP4;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.56!HEYL;;chr20:25062773..25062779,-!p3@VSX1!0.66!3.56!VSX1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.66!3.56!LHX1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.65!420.31!ZFP36L1;;chr15:96873921..96873946,+!p1@NR2F2!0.65!115.18!NR2F2;;chr8:103667935..103667960,-!p1@KLF10!0.64!177.99!KLF10;;chr20:306489..306564,+!p1@SOX12!0.64!42.72!SOX12;;chr4:121843844..121843904,-!p1@PRDM5!0.63!8.65!PRDM5;;chr1:247171347..247171366,-!p2@ZNF695!0.63!6.61!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.63!4.07!POU2F3;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.31!HOXC8;;chr10:114709999..114710031,+!p1@TCF7L2!0.62!91.03!TCF7L2;;chr19:49865646..49865718,-!p1@TEAD2!0.62!32.29!TEAD2;;chr2:157189180..157189290,-!p1@NR4A2!0.62!19.32!NR4A2;;chr1:205600919..205600982,-!p3@ELK4!0.62!13.73!ELK4;;chr9:14314522..14314556,-!p3@NFIB!0.62!8.39!NFIB;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.66!MXD3;;chr17:41277372..41277418,-!p1@BRCA1!0.61!12.97!BRCA1;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.88!MYBL1;;chr1:935398..935465,-!p2@HES4!0.61!7.12!HES4;;chr9:14314106..14314119,-!p5@NFIB!0.61!6.10!NFIB;;chr17:42297092..42297112,-!p11@UBTF!0.61!5.34!UBTF;;chr15:96869206..96869220,+!p21@NR2F2!0.61!3.05!NR2F2;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.05!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.05!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.05!PRRX1;;chr14:21566731..21566836,-!p1@ZNF219!0.60!38.39!ZNF219;;chr19:12721790..12721810,+!p2@ZNF791!0.60!9.41!ZNF791;;chr11:46299539..46299620,+!p2@CREB3L1!0.60!5.59!CREB3L1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.60!4.58!TGIF2;;chr10:3827371..3827386,-!p2@KLF6!0.59!29.75!KLF6;;chr19:57183114..57183145,-!p1@ZNF835!0.59!3.31!ZNF835;;chr6:21597765..21597779,+!p2@SOX4!0.58!27.46!SOX4;;chr9:14314131..14314147,-!p2@NFIB!0.58!18.82!NFIB;;chr12:7079780..7079791,-!p2@PHB2!0.58!17.54!PHB2;;chr17:42298615..42298692,-!p2@UBTF!0.58!17.29!UBTF;;chr6:43140149..43140177,+!p8@SRF!0.58!3.05!SRF;;chr12:54402694..54402705,+!p5@HOXC8!0.58!2.80!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.80!HOXC5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.58!2.80!ZSCAN1;;chr1:40105347..40105358,-!p2@HEYL!0.58!2.80!HEYL;;chrX:129402768..129402796,-!p2@ZNF280C!0.57!9.92!ZNF280C;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.41!MAZ;;chr1:33721900..33721921,+!p2@ZNF362!0.57!7.63!ZNF362;;chr11:12696002..12696022,+!p2@TEAD1!0.57!7.63!TEAD1;;chr7:149470540..149470596,-!p2@ZNF467!0.57!3.81!ZNF467;;chr1:90460661..90460745,+!p1@ZNF326!0.56!93.06!ZNF326;;chr7:74072021..74072119,+!p1@GTF2I!0.56!86.20!GTF2I;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.65!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.56!16.78!CREB3L1;;chr12:53625966..53626012,-!p2@RARG!0.56!8.14!RARG;;chr20:62462566..62462631,-!p1@ZBTB46!0.56!5.59!ZBTB46;;chr19:58373157..5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| ||
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687 | |||
|fonse_cell_line=FF:0100067 | |fonse_cell_line=FF:0100067 | ||
|fonse_cell_line_closure=FF:0100067 | |fonse_cell_line_closure=FF:0100067 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10721-110A1 | |id=FF:10721-110A1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100678 | |is_a=EFO:0002091;;FF:0000210;;FF:0100678 | ||
|is_obsolete= | |is_obsolete= | ||
|name=leiomyoblastoma | |library_id=CNhs11848 | ||
|library_id_phase_based=2:CNhs11848 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10721 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10721 | |||
|name=leiomyoblastoma cell line:G-402 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED | |profile_hcage=CNhs11848,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.0983905284693096,0,0.0182379582094833,0,-0.136300494454532,-0.104262228958362,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290703001705771,0,0.45476515266029,0,0,0,-0.0979578962680575,0,0,0.0455993985170071,0,0,0,0,0,0,0,0,0,0,0.0983905284693096,0,0.0563454592099166,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.149212063438208,0,0,0.0812123610827724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0215729120337236,0,0,0,0,0.0691146182529763,0.230141382987665,0,0,0,0,0.000355177231603152,0.162766343158091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304658680247626,0.178555988295869,0,0,0,-0.0496384083715535,0,0,0,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_tube_id=110A1 | |rna_tube_id=110A1 | ||
|rna_weight_ug=47.09071 | |rna_weight_ug=47.09071 | ||
|rnaseq_library_id=RDhi10080 | |||
|sample_age=9 months | |sample_age=9 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-1440 | |sample_cell_catalog=CRL-1440 | ||
|sample_cell_line=G-402 | |sample_cell_line=G-402 | ||
| Line 79: | Line 103: | ||
|top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896 | |top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10721-110A1;search_select_hide=table117:FF:10721-110A1 | |||
}} | }} | ||
Latest revision as of 15:01, 3 June 2020
| Name: | leiomyoblastoma cell line:G-402 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11848 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11848
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11848
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.338 |
| 10 | 10 | 0.33 |
| 100 | 100 | 0.0639 |
| 101 | 101 | 0.647 |
| 102 | 102 | 0.998 |
| 103 | 103 | 0.222 |
| 104 | 104 | 0.504 |
| 105 | 105 | 0.834 |
| 106 | 106 | 3.09753e-6 |
| 107 | 107 | 0.0152 |
| 108 | 108 | 0.989 |
| 109 | 109 | 0.0133 |
| 11 | 11 | 0.366 |
| 110 | 110 | 0.208 |
| 111 | 111 | 0.536 |
| 112 | 112 | 0.34 |
| 113 | 113 | 0.0145 |
| 114 | 114 | 0.493 |
| 115 | 115 | 0.932 |
| 116 | 116 | 0.584 |
| 117 | 117 | 0.11 |
| 118 | 118 | 0.837 |
| 119 | 119 | 0.134 |
| 12 | 12 | 0.434 |
| 120 | 120 | 0.717 |
| 121 | 121 | 0.0811 |
| 122 | 122 | 0.815 |
| 123 | 123 | 0.218 |
| 124 | 124 | 0.838 |
| 125 | 125 | 0.931 |
| 126 | 126 | 0.837 |
| 127 | 127 | 0.583 |
| 128 | 128 | 0.00116 |
| 129 | 129 | 0.702 |
| 13 | 13 | 0.0359 |
| 130 | 130 | 0.959 |
| 131 | 131 | 0.351 |
| 132 | 132 | 0.542 |
| 133 | 133 | 0.00657 |
| 134 | 134 | 0.356 |
| 135 | 135 | 0.125 |
| 136 | 136 | 0.0497 |
| 137 | 137 | 0.622 |
| 138 | 138 | 0.513 |
| 139 | 139 | 0.151 |
| 14 | 14 | 0.395 |
| 140 | 140 | 0.24 |
| 141 | 141 | 0.538 |
| 142 | 142 | 0.807 |
| 143 | 143 | 0.0619 |
| 144 | 144 | 0.697 |
| 145 | 145 | 0.492 |
| 146 | 146 | 0.295 |
| 147 | 147 | 0.408 |
| 148 | 148 | 0.545 |
| 149 | 149 | 0.0339 |
| 15 | 15 | 0.498 |
| 150 | 150 | 0.0915 |
| 151 | 151 | 0.265 |
| 152 | 152 | 0.975 |
| 153 | 153 | 0.118 |
| 154 | 154 | 0.967 |
| 155 | 155 | 0.316 |
| 156 | 156 | 0.786 |
| 157 | 157 | 0.643 |
| 158 | 158 | 0.331 |
| 159 | 159 | 0.251 |
| 16 | 16 | 0.648 |
| 160 | 160 | 0.928 |
| 161 | 161 | 0.644 |
| 162 | 162 | 0.153 |
| 163 | 163 | 0.0499 |
| 164 | 164 | 0.972 |
| 165 | 165 | 0.315 |
| 166 | 166 | 0.163 |
| 167 | 167 | 0.761 |
| 168 | 168 | 0.0146 |
| 169 | 169 | 0.721 |
| 17 | 17 | 0.399 |
| 18 | 18 | 0.206 |
| 19 | 19 | 0.421 |
| 2 | 2 | 0.0938 |
| 20 | 20 | 0.123 |
| 21 | 21 | 0.885 |
| 22 | 22 | 0.936 |
| 23 | 23 | 0.00211 |
| 24 | 24 | 0.956 |
| 25 | 25 | 0.633 |
| 26 | 26 | 0.564 |
| 27 | 27 | 0.243 |
| 28 | 28 | 0.966 |
| 29 | 29 | 0.475 |
| 3 | 3 | 0.504 |
| 30 | 30 | 0.302 |
| 31 | 31 | 0.27 |
| 32 | 32 | 0.877 |
| 33 | 33 | 0.974 |
| 34 | 34 | 0.477 |
| 35 | 35 | 0.597 |
| 36 | 36 | 0.0774 |
| 37 | 37 | 0.815 |
| 38 | 38 | 0.484 |
| 39 | 39 | 0.389 |
| 4 | 4 | 0.912 |
| 40 | 40 | 0.00932 |
| 41 | 41 | 0.0906 |
| 42 | 42 | 0.0875 |
| 43 | 43 | 0.247 |
| 44 | 44 | 0.481 |
| 45 | 45 | 0.0512 |
| 46 | 46 | 0.681 |
| 47 | 47 | 0.0347 |
| 48 | 48 | 0.182 |
| 49 | 49 | 0.983 |
| 5 | 5 | 0.184 |
| 50 | 50 | 0.9 |
| 51 | 51 | 0.945 |
| 52 | 52 | 0.123 |
| 53 | 53 | 0.575 |
| 54 | 54 | 0.595 |
| 55 | 55 | 0.737 |
| 56 | 56 | 0.687 |
| 57 | 57 | 0.383 |
| 58 | 58 | 0.0919 |
| 59 | 59 | 0.0937 |
| 6 | 6 | 0.895 |
| 60 | 60 | 0.0592 |
| 61 | 61 | 0.361 |
| 62 | 62 | 0.202 |
| 63 | 63 | 0.961 |
| 64 | 64 | 0.536 |
| 65 | 65 | 0.0291 |
| 66 | 66 | 0.0563 |
| 67 | 67 | 0.927 |
| 68 | 68 | 0.116 |
| 69 | 69 | 0.468 |
| 7 | 7 | 0.372 |
| 70 | 70 | 0.767 |
| 71 | 71 | 0.918 |
| 72 | 72 | 0.138 |
| 73 | 73 | 0.442 |
| 74 | 74 | 0.161 |
| 75 | 75 | 0.0847 |
| 76 | 76 | 0.809 |
| 77 | 77 | 0.477 |
| 78 | 78 | 0.933 |
| 79 | 79 | 0.18 |
| 8 | 8 | 0.112 |
| 80 | 80 | 0.0228 |
| 81 | 81 | 0.617 |
| 82 | 82 | 0.711 |
| 83 | 83 | 0.706 |
| 84 | 84 | 0.982 |
| 85 | 85 | 0.0406 |
| 86 | 86 | 0.581 |
| 87 | 87 | 0.105 |
| 88 | 88 | 0.0904 |
| 89 | 89 | 0.651 |
| 9 | 9 | 0.281 |
| 90 | 90 | 0.944 |
| 91 | 91 | 0.0494 |
| 92 | 92 | 0.0604 |
| 93 | 93 | 0.753 |
| 94 | 94 | 0.984 |
| 95 | 95 | 0.00165 |
| 96 | 96 | 0.855 |
| 97 | 97 | 0.823 |
| 98 | 98 | 0.408 |
| 99 | 99 | 0.601 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11848
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100678 G-402 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0100678 (G-402 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
