FF:10416-106C2: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	chronic lymphocytic leukemia (T-CLL) cell line:SKW-3
Species:	Human (Homo sapiens)
Library ID:	CNhs11714
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	27 year old adult
sex	male
age	27
cell type	t cell
cell line	SKW-3
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00006003

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11714		CAGE		DRX007852		DRR008724

Accession ID Hg19

Library id		BAM		CTSS
CNhs11714		DRZ000149		DRZ001534

Accession ID Hg38

Library id		BAM		CTSS
CNhs11714		DRZ011499		DRZ012884

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.066
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.658
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.221
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0762
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.212
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.379
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.205
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.751
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.483
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11714

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.59318e-4
MA0003.1	MA0003.1	0.982
MA0004.1	MA0004.1	0.395
MA0006.1	MA0006.1	0.493
MA0007.1	MA0007.1	0.667
MA0009.1	MA0009.1	0.9
MA0014.1	MA0014.1	0.691
MA0017.1	MA0017.1	0.114
MA0018.2	MA0018.2	9.84657e-4
MA0019.1	MA0019.1	0.192
MA0024.1	MA0024.1	2.82884e-7
MA0025.1	MA0025.1	0.32
MA0027.1	MA0027.1	0.399
MA0028.1	MA0028.1	0.00979
MA0029.1	MA0029.1	0.687
MA0030.1	MA0030.1	0.0071
MA0031.1	MA0031.1	0.138
MA0035.2	MA0035.2	5.0818e-4
MA0038.1	MA0038.1	0.783
MA0039.2	MA0039.2	0.312
MA0040.1	MA0040.1	0.142
MA0041.1	MA0041.1	0.113
MA0042.1	MA0042.1	0.265
MA0043.1	MA0043.1	0.00187
MA0046.1	MA0046.1	0.0342
MA0047.2	MA0047.2	0.595
MA0048.1	MA0048.1	0.956
MA0050.1	MA0050.1	0.756
MA0051.1	MA0051.1	0.756
MA0052.1	MA0052.1	0.0285
MA0055.1	MA0055.1	0.509
MA0057.1	MA0057.1	0.747
MA0058.1	MA0058.1	0.506
MA0059.1	MA0059.1	0.00354
MA0060.1	MA0060.1	7.88823e-4
MA0061.1	MA0061.1	0.564
MA0062.2	MA0062.2	2.9811e-5
MA0065.2	MA0065.2	0.00788
MA0066.1	MA0066.1	0.132
MA0067.1	MA0067.1	0.04
MA0068.1	MA0068.1	0.432
MA0069.1	MA0069.1	0.472
MA0070.1	MA0070.1	0.868
MA0071.1	MA0071.1	0.188
MA0072.1	MA0072.1	0.28
MA0073.1	MA0073.1	0.766
MA0074.1	MA0074.1	0.901
MA0076.1	MA0076.1	0.00146
MA0077.1	MA0077.1	0.541
MA0078.1	MA0078.1	0.759
MA0079.2	MA0079.2	0.177
MA0080.2	MA0080.2	7.95428e-4
MA0081.1	MA0081.1	0.133
MA0083.1	MA0083.1	7.1531e-5
MA0084.1	MA0084.1	0.969
MA0087.1	MA0087.1	0.285
MA0088.1	MA0088.1	0.00757
MA0090.1	MA0090.1	4.06942e-4
MA0091.1	MA0091.1	0.342
MA0092.1	MA0092.1	0.375
MA0093.1	MA0093.1	0.485
MA0099.2	MA0099.2	2.37246e-6
MA0100.1	MA0100.1	0.0181
MA0101.1	MA0101.1	0.167
MA0102.2	MA0102.2	0.0191
MA0103.1	MA0103.1	0.0196
MA0104.2	MA0104.2	0.00228
MA0105.1	MA0105.1	0.00313
MA0106.1	MA0106.1	0.352
MA0107.1	MA0107.1	0.0457
MA0108.2	MA0108.2	1.55921e-8
MA0111.1	MA0111.1	0.188
MA0112.2	MA0112.2	0.0523
MA0113.1	MA0113.1	0.902
MA0114.1	MA0114.1	0.124
MA0115.1	MA0115.1	0.18
MA0116.1	MA0116.1	5.63041e-5
MA0117.1	MA0117.1	0.686
MA0119.1	MA0119.1	0.445
MA0122.1	MA0122.1	0.879
MA0124.1	MA0124.1	0.369
MA0125.1	MA0125.1	0.364
MA0131.1	MA0131.1	0.403
MA0135.1	MA0135.1	0.0883
MA0136.1	MA0136.1	8.9519e-5
MA0137.2	MA0137.2	0.0217
MA0138.2	MA0138.2	0.702
MA0139.1	MA0139.1	0.172
MA0140.1	MA0140.1	4.67122e-4
MA0141.1	MA0141.1	0.0637
MA0142.1	MA0142.1	0.623
MA0143.1	MA0143.1	0.375
MA0144.1	MA0144.1	0.187
MA0145.1	MA0145.1	0.574
MA0146.1	MA0146.1	0.73
MA0147.1	MA0147.1	3.32843e-4
MA0148.1	MA0148.1	0.357
MA0149.1	MA0149.1	0.0351
MA0150.1	MA0150.1	0.499
MA0152.1	MA0152.1	0.278
MA0153.1	MA0153.1	0.0422
MA0154.1	MA0154.1	0.0294
MA0155.1	MA0155.1	0.948
MA0156.1	MA0156.1	6.38343e-5
MA0157.1	MA0157.1	0.95
MA0159.1	MA0159.1	0.0973
MA0160.1	MA0160.1	0.381
MA0162.1	MA0162.1	0.454
MA0163.1	MA0163.1	2.19565e-14
MA0164.1	MA0164.1	0.864
MA0258.1	MA0258.1	0.0439
MA0259.1	MA0259.1	0.0504

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11714

Novel motif	Logo	P-value
1	1	0.0365
10	10	0.0182
100	100	0.25
101	101	0.499
102	102	0.467
103	103	0.056
104	104	0.442
105	105	0.946
106	106	0.844
107	107	0.853
108	108	0.837
109	109	0.0164
11	11	0.0369
110	110	0.222
111	111	0.108
112	112	0.515
113	113	0.803
114	114	0.0892
115	115	0.196
116	116	0.231
117	117	0.0281
118	118	0.982
119	119	0.318
12	12	0.597
120	120	0.246
121	121	0.458
122	122	0.769
123	123	0.0215
124	124	0.0779
125	125	0.00422
126	126	0.618
127	127	0.363
128	128	0.756
129	129	0.226
13	13	0.126
130	130	0.235
131	131	0.654
132	132	0.813
133	133	0.203
134	134	0.483
135	135	0.885
136	136	0.547
137	137	0.942
138	138	0.429
139	139	0.308
14	14	0.874
140	140	0.181
141	141	0.101
142	142	0.219
143	143	3.53499e-5
144	144	0.934
145	145	0.317
146	146	0.432
147	147	0.503
148	148	0.281
149	149	0.497
15	15	0.0885
150	150	0.558
151	151	0.964
152	152	0.0506
153	153	0.882
154	154	0.754
155	155	0.109
156	156	0.874
157	157	0.237
158	158	0.969
159	159	0.205
16	16	0.36
160	160	0.0747
161	161	0.0901
162	162	0.979
163	163	0.397
164	164	0.208
165	165	0.431
166	166	0.957
167	167	0.0501
168	168	0.821
169	169	0.84
17	17	0.74
18	18	0.551
19	19	0.964
2	2	0.95
20	20	0.79
21	21	0.107
22	22	0.81
23	23	0.378
24	24	0.305
25	25	0.17
26	26	0.0222
27	27	0.248
28	28	0.861
29	29	0.00763
3	3	0.211
30	30	0.326
31	31	0.835
32	32	0.35
33	33	0.485
34	34	0.587
35	35	0.0857
36	36	0.0204
37	37	0.4
38	38	0.499
39	39	0.735
4	4	0.226
40	40	0.228
41	41	0.444
42	42	0.18
43	43	0.249
44	44	0.0807
45	45	0.508
46	46	0.0672
47	47	0.00606
48	48	0.071
49	49	0.0597
5	5	0.322
50	50	0.759
51	51	0.732
52	52	0.193
53	53	0.676
54	54	0.688
55	55	0.912
56	56	0.653
57	57	0.332
58	58	0.266
59	59	0.499
6	6	0.446
60	60	0.973
61	61	0.393
62	62	0.108
63	63	0.344
64	64	0.116
65	65	0.631
66	66	0.0252
67	67	0.715
68	68	0.534
69	69	0.37
7	7	0.223
70	70	0.218
71	71	0.00993
72	72	0.934
73	73	0.691
74	74	0.284
75	75	0.0196
76	76	0.389
77	77	0.77
78	78	0.243
79	79	0.478
8	8	0.104
80	80	0.33
81	81	0.196
82	82	0.372
83	83	0.646
84	84	0.958
85	85	0.743
86	86	0.487
87	87	0.271
88	88	0.689
89	89	0.232
9	9	0.954
90	90	0.135
91	91	0.983
92	92	0.714
93	93	0.107
94	94	0.172
95	95	0.124
96	96	0.0839
97	97	0.36
98	98	0.224
99	99	0.561

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11714

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103505 T-cell chronic lymphocytic leukemia cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0103505 (T-cell chronic lymphocytic leukemia cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00006003
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000084,CL:0000838,CL:0002031,CL:0000827,CL:0000037,CL:0000566,CL:0000837,CL:0000051
+|accession_numbers=CAGE;DRX007852;DRR008724;DRZ000149;DRZ001534;DRZ011499;DRZ012884
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0103505
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.18!149.20!TCF7;;chr9:77112244..77112262,+!p1@RORB!1.98!106.28!RORB;;chr4:109087445..109087463,-!p1@LEF1!1.97!93.00!LEF1;;chr8:60031619..60031676,-!p1@TOX!1.78!125.70!TOX;;chr12:54694653..54694672,-!p2@NFE2!1.78!59.27!NFE2;;chr4:109090075..109090095,-!p2@LEF1!1.76!56.21!LEF1;;chr1:23857698..23857733,-!p1@E2F2!1.75!98.11!E2F2;;chr6:135502501..135502546,+!p1@MYB!1.71!59.27!MYB;;chr6:135502408..135502459,+!p2@MYB!1.61!45.99!MYB;;chr2:74741569..74741620,+!p1@TLX2!1.59!37.81!TLX2;;chr10:8096772..8096787,+!p2@GATA3!1.56!41.90!GATA3;;chr5:133450365..133450444,+!p1@TCF7!1.49!131.83!TCF7;;chr2:100759010..100759035,-!p1@AFF3!1.46!27.59!AFF3;;chr2:68592406..68592424,+!p1@PLEK!1.44!26.57!PLEK;;chr4:109086281..109086319,-!p9@LEF1!1.44!26.57!LEF1;;chr14:99738138..99738163,-!p1@BCL11B!1.44!26.57!BCL11B;;chr4:109089901..109089930,-!p3@LEF1!1.42!25.55!LEF1;;chr1:23857674..23857685,-!p3@E2F2!1.39!23.50!E2F2;;chr1:158978768..158978800,+!p8@IFI16!1.35!21.46!IFI16;;chr19:19779619..19779670,+!p1@ZNF101!1.34!57.23!ZNF101;;chr7:50348268..50348366,+!p4@IKZF1!1.33!20.44!IKZF1;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.50!SATB1;;chr14:75988771..75988826,+!p1@BATF!1.29!24.53!BATF;;chr1:151798546..151798590,-!p2@RORC!1.29!18.39!RORC;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.39!KDM5D;;chr4:109088940..109089037,-!p4@LEF1!1.29!18.39!LEF1;;chrX:131624056..131624069,-!p2@MBNL3!1.28!24.53!MBNL3;;chr17:42295682..42295731,-!p17@UBTF!1.26!17.37!UBTF;;chr2:214014959..214015006,-!p4@IKZF2!1.24!16.35!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.21!54.16!RUNX1;;chr14:23588242..23588262,-!p1@CEBPE!1.21!15.33!CEBPE;;chr3:141747459..141747475,-!p1@TFDP2!1.19!118.54!TFDP2;;chr12:54694758..54694805,-!p1@NFE2!1.19!17.37!NFE2;;chr2:100759037..100759058,-!p2@AFF3!1.18!14.31!AFF3;;chr6:135502472..135502489,+!p3@MYB!1.18!14.31!MYB;;chr3:141747441..141747452,-!p4@TFDP2!1.15!18.39!TFDP2;;chr3:27763807..27763822,-!p1@EOMES!1.15!13.29!EOMES;;chr14:23588816..23588836,-!p4@CEBPE!1.15!13.29!CEBPE;;chr14:99737850..99737852,-!p3@BCL11B!1.15!13.29!BCL11B;;chr20:42295745..42295765,+!p1@MYBL2!1.13!203.36!MYBL2;;chr4:109088814..109088831,-!p18@LEF1!1.12!12.26!LEF1;;chr6:135513595..135513617,+!p4@MYB!1.12!12.26!MYB;;chr17:7197911..7197964,-!p1@YBX2!1.12!12.26!YBX2;;chr5:176738887..176738934,-!p1@MXD3!1.11!79.71!MXD3;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.62!ELF1;;chr2:100759076..100759088,-!p10@AFF3!1.09!11.24!AFF3;;chr2:242556900..242556916,-!p6@THAP4!1.09!11.24!THAP4;;chr19:19779686..19779697,+!p3@ZNF101!1.06!12.26!ZNF101;;chr17:42295777..42295816,-!p7@UBTF!1.05!12.26!UBTF;;chr1:151032922..151032951,+!p2@MLLT11!1.03!16.35!MLLT11;;chr3:71355163..71355209,-!p5@FOXP1!1.02!13.29!FOXP1;;chr2:74741642..74741658,+!p2@TLX2!1.01!9.20!TLX2;;chr4:109090054..109090073,-!p7@LEF1!1.01!9.20!LEF1;;chr5:142814241..142814278,-!p12@NR3C1!1.01!9.20!NR3C1;;chr1:8934931..8934947,-!p4@ENO1!0.98!28.61!ENO1;;chr2:192015701..192015743,-!p1@STAT4!0.96!11.24!STAT4;;chr4:109087906..109087928,-!p12@LEF1!0.96!8.18!LEF1;;chr4:109088089..109088101,-!p11@LEF1!0.96!8.18!LEF1;;chr10:8100691..8100732,+!p5@GATA3!0.96!8.18!GATA3;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.18!ZFY;;chr1:92949331..92949377,-!p2@GFI1!0.96!8.18!GFI1;;chr21:36421347..36421380,-!p8@RUNX1!0.96!8.18!RUNX1;;chr7:50343634..50343717,+!p2@IKZF1!0.96!8.18!IKZF1;;chr7:50343895..50343936,+!p5@IKZF1!0.96!8.18!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!0.95!22.48!AKNA;;chr3:141868293..141868355,-!p2@TFDP2!0.94!69.49!TFDP2;;chr6:91006518..91006570,-!p1@BACH2!0.92!17.37!BACH2;;chr8:37963466..37963506,+!p3@ASH2L!0.92!9.20!ASH2L;;chr8:102217679..102217719,-!p2@ZNF706!0.91!25.55!ZNF706;;chr2:214015343..214015366,-!p3@IKZF2!0.91!7.15!IKZF2;;chr2:68592394..68592405,+!p2@PLEK!0.91!7.15!PLEK;;chr4:109087885..109087899,-!p23@LEF1!0.91!7.15!LEF1;;chr4:109088863..109088887,-!p24@LEF1!0.91!7.15!LEF1;;chrX:131623982..131624011,-!p6@MBNL3!0.90!10.22!MBNL3;;chr21:36231861..36231877,-!p12@RUNX1!0.90!9.20!RUNX1;;chr6:21597283..21597312,+!p7@SOX4!0.89!9.20!SOX4;;chr11:128563948..128564003,+!p1@FLI1!0.88!83.80!FLI1;;chr6:21597765..21597779,+!p2@SOX4!0.88!56.21!SOX4;;chr1:158979686..158979745,+!p1@IFI16!0.87!220.74!IFI16;;chr19:24097675..24097699,+!p1@ZNF726!0.87!22.48!ZNF726;;chr16:54320675..54320715,-!p1@IRX3!0.87!14.31!IRX3;;chr12:53856284..53856299,+!p3@PCBP2!0.85!18.39!PCBP2;;chr10:8095593..8095625,+!p3@GATA3!0.85!7.15!GATA3;;chr13:41593493..41593506,-!p8@ELF1!0.85!6.13!ELF1;;chr16:29819558..29819572,+!p28@MAZ!0.85!6.13!MAZ;;chr16:85936412..85936431,+!p2@IRF8!0.85!6.13!IRF8;;chr17:38020392..38020477,-!p1@IKZF3!0.85!6.13!IKZF3;;chr7:50343800..50343811,+!p8@IKZF1!0.85!6.13!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.85!6.13!RUNX1;;chr4:109089573..109089585,-!p8@LEF1!0.85!6.13!LEF1;;chr4:109089996..109090012,-!p5@LEF1!0.85!6.13!LEF1;;chr4:109090408..109090441,-!p21@LEF1!0.85!6.13!LEF1;;chr16:29819446..29819471,+!p9@MAZ!0.84!18.39!MAZ;;chr16:54320646..54320672,-!p2@IRX3!0.84!9.20!IRX3;;chr1: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+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 36: / Line 41: @@
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520lymphocytic%2520leukemia%2520%2528T-CLL%2529%2520cell%2520line%253aSKW-3.CNhs11714.10416-106C2.hg19.ctss.bed.gz
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520lymphocytic%2520leukemia%2520%2528T-CLL%2529%2520cell%2520line%253aSKW-3.CNhs11714.10416-106C2.hg38.nobarcode.bam
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 |id=FF:10416-106C2
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 |name=chronic lymphocytic leukemia (T-CLL) cell line:SKW-3
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
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@@ Line 59: / Line 78: @@
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 |sample_cell_line=SKW-3
@@ Line 80: / Line 100: @@
 |top_motifs=E2F1..5:2.18656627694;NR5A1,2:2.05440719568;MYB:1.91786819862;IKZF2:1.63702527573;ARID5B:1.43342916442;POU3F1..4:1.40568950014;AIRE:1.39721679203;YY1:1.3926356171;DMAP1_NCOR{1,2}_SMARC:1.37024124685;T:1.2475298909;POU6F1:1.19605429116;PAX6:1.108809533;HOXA9_MEIS1:1.10668285571;NFY{A,B,C}:1.1063863711;ELF1,2,4:1.08301414533;POU2F1..3:1.07519852031;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.04365575483;GATA6:1.04194235123;RUNX1..3:1.0206255079;CDX1,2,4:1.00064056931;SPZ1:0.964373234292;ZBTB16:0.910309451829;GFI1:0.885624218328;PBX1:0.870717813437;ZNF143:0.83932535285;RORA:0.774736693632;SNAI1..3:0.759536757479;NRF1:0.720343663789;SPI1:0.663553746771;HES1:0.660016224213;TLX2:0.648055281235;BREu{core}:0.647131986928;TFDP1:0.588051567877;FOXA2:0.564684921103;FOXP3:0.551173125945;STAT5{A,B}:0.523475151704;LMO2:0.499531684781;ESRRA:0.485803227728;SPIB:0.483104154886;ETS1,2:0.480498799223;ELK1,4_GABP{A,B1}:0.479526012782;TEF:0.442607225238;MYOD1:0.414864744763;SOX{8,9,10}:0.410525150371;ZNF148:0.400884465443;ONECUT1,2:0.393748581701;CDC5L:0.360231253434;PITX1..3:0.341147386046;RBPJ:0.33438749151;UFEwm:0.309411865147;NANOG:0.280726796911;NKX6-1,2:0.273455050846;bHLH_family:0.231505232085;ZEB1:0.212169031222;EVI1:0.162774590865;POU1F1:0.15294120578;NKX3-1:0.151724674599;FOXD3:0.150084621608;HAND1,2:0.130837698016;PAX8:0.112377881167;FOXP1:0.111475667478;BPTF:0.103309442862;RFX2..5_RFXANK_RFXAP:0.0804964736763;TGIF1:0.0752688041258;NFE2L1:0.0732660539716;NANOG{mouse}:0.0588092432905;ALX1:0.0572066932118;HOX{A6,A7,B6,B7}:-0.032297544846;NKX2-2,8:-0.0479295963529;PDX1:-0.0753106366731;FOXM1:-0.0758664601767;IRF1,2:-0.0908234178193;CUX2:-0.091015213607;NKX2-1,4:-0.0957446431547;HNF4A_NR2F1,2:-0.121062930993;IRF7:-0.121063387702;KLF4:-0.12234595867;FOX{F1,F2,J1}:-0.126724399567;VSX1,2:-0.153310960424;HSF1,2:-0.17895238759;PAX4:-0.185771730497;LHX3,4:-0.195403363324;AR:-0.198221618408;RXRA_VDR{dimer}:-0.208105641487;OCT4_SOX2{dimer}:-0.227367081886;EN1,2:-0.254980357812;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.258733932935;HOX{A4,D4}:-0.288395528577;FOX{I1,J2}:-0.307220390676;HNF1A:-0.309303315257;LEF1_TCF7_TCF7L1,2:-0.309754936998;NFKB1_REL_RELA:-0.315951928744;ATF5_CREB3:-0.325239700403;HOX{A5,B5}:-0.32634695662;NR3C1:-0.363120276398;GZF1:-0.365915535975;TAL1_TCF{3,4,12}:-0.373790741703;SOX17:-0.374523742791;SOX5:-0.385358121549;NFIL3:-0.446367414505;RFX1:-0.453428180841;FOXO1,3,4:-0.465394658905;MYFfamily:-0.477760146537;PAX5:-0.479123472022;MEF2{A,B,C,D}:-0.48379998039;PRRX1,2:-0.486154022691;PAX2:-0.486285296261;PPARG:-0.491909576351;CRX:-0.496330401125;GFI1B:-0.519208963331;HBP1_HMGB_SSRP1_UBTF:-0.532539397364;ZNF423:-0.536112553461;CEBPA,B_DDIT3:-0.555801043885;GATA4:-0.586615240695;NKX2-3_NKX2-5:-0.588828158625;NFE2L2:-0.626259385206;ZIC1..3:-0.626376462794;ZNF384:-0.632549697256;PAX3,7:-0.635727894912;NFE2:-0.645436029192;NR1H4:-0.664505266105;SOX2:-0.676307474469;DBP:-0.690655013049;MYBL2:-0.707153692411;NR6A1:-0.712981782286;ZBTB6:-0.719062929714;FOS_FOS{B,L1}_JUN{B,D}:-0.724618897329;SMAD1..7,9:-0.72604773704;HMX1:-0.75056246749;PAX1,9:-0.758914730259;TFAP4:-0.76473448344;NFIX:-0.768956498855;ZNF238:-0.771951692503;POU5F1:-0.784672392001;REST:-0.785102829238;STAT1,3:-0.809538946549;HLF:-0.823521140812;FOXN1:-0.83571771984;BACH2:-0.83938648594;TBP:-0.843638777033;NHLH1,2:-0.869362090275;FOSL2:-0.870363942483;CREB1:-0.877003662766;FOXQ1:-0.881854333622;EBF1:-0.883954558964;GTF2A1,2:-0.940476114734;RXR{A,B,G}:-0.966814504907;GCM1,2:-0.971239031375;MTF1:-0.980084800607;STAT2,4,6:-0.999787513861;NKX3-2:-1.00664103826;JUN:-1.01757400107;AHR_ARNT_ARNT2:-1.05457521726;MED-1{core}:-1.0608999852;PRDM1:-1.06654814473;ATF4:-1.07169848517;ALX4:-1.08938188915;RREB1:-1.09781870164;TOPORS:-1.0997369855;SREBF1,2:-1.12485537268;TP53:-1.12588396843;NFATC1..3:-1.15208772956;ATF6:-1.18598515883;IKZF1:-1.18811335413;TBX4,5:-1.19216302613;SRF:-1.21000503094;HIF1A:-1.23064606546;ESR1:-1.23774402903;FOXL1:-1.25891612764;MZF1:-1.28311567617;MTE{core}:-1.33696863584;ZFP161:-1.39485914215;GTF2I:-1.42980073787;TEAD1:-1.47873305437;ADNP_IRX_SIX_ZHX:-1.4818855424;HMGA1,2:-1.57195577734;EP300:-1.58209677858;XBP1:-1.65866128396;HIC1:-1.71821530907;FOX{D1,D2}:-1.74135401747;GLI1..3:-1.75150060856;TFAP2B:-1.79120171203;TLX1..3_NFIC{dimer}:-1.7967534544;MAZ:-1.81115452799;ATF2:-1.86762551307;PATZ1:-1.98150667199;TFCP2:-2.15345661856;MAFB:-2.1600979744;EGR1..3:-2.2940773233;XCPE1{core}:-2.39954428826;TFAP2{A,C}:-2.4948043587;SP1:-2.51744175804
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10416-106C2;search_select_hide=table117:FF:10416-106C2
 }}

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FF:10416-106C2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0