FF:10593-108D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991 | |DRA_sample_Accession=CAGE@SAMD00005150 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005150 | ||
|accession_numbers=CAGE;DRX008024;DRR008896;DRZ000321;DRZ001706;DRZ011671;DRZ013056 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057131;DRR062890;DRZ007966 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!2.56!364.91!ZNF676;;chr21:45681774..45681821,-!p1@DNMT3L!2.53!334.59!DNMT3L;;chr8:145701192..145701241,-!p1@FOXH1!2.47!294.71!FOXH1;;chr19:22193731..22193751,-!p1@ZNF208!2.26!181.22!ZNF208;;chr21:45705752..45705767,+!p1@AIRE!2.24!173.41!AIRE;;chr10:135043702..135043729,+!p1@UTF1!2.22!163.39!UTF1;;chr4:188916918..188916942,+!p1@ZFP42!2.19!153.19!ZFP42;;chr6:29648890..29648944,-!p1@ZFP57!2.18!150.43!ZFP57;;chr19:22469236..22469266,+!p1@ZNF729!2.18!149.15!ZNF729;;chr20:31350184..31350200,+!p1@DNMT3B!2.09!247.47!DNMT3B;;chr10:70320074..70320106,+!p1@TET1!2.09!235.89!TET1;;chr19:20188776..20188826,+!p1@ZNF90!2.00!255.56!ZNF90;;chr21:45681737..45681760,-!p2@DNMT3L!1.98!95.30!DNMT3L;;chr6:31138439..31138475,-!p1@POU5F1!1.98!94.47!POU5F1;;chr1:201979743..201979762,+!p1@ELF3!1.91!80.32!ELF3;;chr19:20278043..20278054,+!p2@ZNF486!1.91!80.22!ZNF486;;chr3:181429704..181429722,+!p1@SOX2!1.90!79.03!SOX2;;chr2:16081912..16081931,+!p2@MYCN!1.88!74.62!MYCN;;chr17:7493405..7493419,-!p1@SOX15!1.87!73.42!SOX15;;chr16:3149278..3149305,-!p1@ZSCAN10!1.85!70.02!ZSCAN10;;chr2:16080659..16080685,+!p1@MYCN!1.85!69.56!MYCN;;chr1:201979703..201979721,+!p2@ELF3!1.83!67.27!ELF3;;chr2:88752207..88752218,-!p1@FOXI3!1.80!62.76!FOXI3;;chr7:63505799..63505904,+!p1@ZNF727!1.80!62.03!ZNF727;;chr17:41622925..41622976,-!p3@ETV4!1.77!84.27!ETV4;;chr8:70983476..70983493,-!p1@PRDM14!1.76!56.06!PRDM14;;chr8:145701166..145701187,-!p2@FOXH1!1.69!48.15!FOXH1;;chr17:46622205..46622218,-!p3@HOXB2!1.68!53.85!HOXB2;;chr17:41622834..41622883,-!p6@ETV4!1.65!52.93!ETV4;;chr12:7941989..7942014,+!p1@NANOG!1.65!43.65!NANOG;;chr8:37963466..37963506,+!p3@ASH2L!1.64!53.12!ASH2L;;chr19:22469215..22469229,+!p2@ZNF729!1.64!42.91!ZNF729;;chr8:73921136..73921151,+!p2@TERF1!1.63!62.30!TERF1;;chr10:135043493..135043510,+!p2@UTF1!1.63!42.09!UTF1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.62!40.25!TFCP2L1;;chr12:19556998..19557013,+!p6@AEBP2!1.61!39.97!AEBP2;;chr1:44584485..44584512,+!p2@KLF17!1.59!37.95!KLF17;;chr19:20278012..20278034,+!p1@ZNF486!1.57!292.41!ZNF486;;chr12:8044970..8044999,+!p@chr12:8044970..8044999,+!1.57!36.21!NANOGP1;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.64!ZNF483;;chr21:45682241..45682265,-!p3@DNMT3L!1.54!33.73!DNMT3L;;chr19:20188831..20188844,+!p2@ZNF90!1.51!31.24!ZNF90;;chr19:22605097..22605121,-!p2@ZNF98!1.50!30.88!ZNF98;;chr8:37963407..37963454,+!p2@ASH2L!1.49!86.93!ASH2L;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.68!IRX2;;chr8:70983443..70983460,-!p2@PRDM14!1.49!29.68!PRDM14;;chr1:247171347..247171366,-!p2@ZNF695!1.48!52.10!ZNF695;;chr5:149546334..149546364,+!p1@CDX1!1.48!29.22!CDX1;;chr10:126138597..126138612,-!p1@NKX1-2!1.47!28.58!NKX1-2;;chr2:25475094..25475112,-!p3@DNMT3A!1.47!28.49!DNMT3A;;chr19:22193706..22193717,-!p2@ZNF208!1.47!28.30!ZNF208;;chr12:3069037..3069119,+!p2@TEAD4!1.45!91.16!TEAD4;;chr19:23869970..23869991,-!p1@ZNF675!1.44!97.13!ZNF675;;chr2:25475120..25475176,-!p2@DNMT3A!1.44!35.10!DNMT3A;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!1.44!26.83!ZNF676;;chr17:41622765..41622821,-!p2@ETV4!1.41!37.59!ETV4;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.63!SOX2;;chr19:22605136..22605154,-!p1@ZNF98!1.40!24.35!ZNF98;;chr14:57272369..57272391,-!p2@OTX2!1.40!24.35!OTX2;;chr7:14028743..14028799,-!p3@ETV1!1.39!29.50!ETV1;;chr1:247171316..247171336,-!p3@ZNF695!1.38!33.91!ZNF695;;chr3:185797712..185797746,-!p6@ETV5!1.38!22.97!ETV5;;chr19:22817119..22817145,+!p1@ZNF492!1.37!36.85!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.67!TFAP2C;;chr10:70320115..70320126,+!p3@TET1!1.37!22.61!TET1;;chr21:45681768..45681773,-!p4@DNMT3L!1.37!22.33!DNMT3L;;chr6:34204672..34204692,+!p1@HMGA1!1.36!2376.86!HMGA1;;chr17:38256799..38256815,-!p3@NR1D1!1.35!38.23!NR1D1;;chr7:64254834..64254854,+!p2@ZNF138!1.34!36.94!ZNF138;;chr19:22235279..22235301,+!p1@ZNF257!1.33!38.14!ZNF257;;chr19:45579725..45579743,-!p1@ZNF296!1.32!88.22!ZNF296;;chr2:16082155..16082169,+!p3@MYCN!1.32!19.67!MYCN;;chr19:20011775..20011800,+!p2@ZNF93!1.30!33.54!ZNF93;;chr20:50418972..50419029,-!p1@SALL4!1.30!19.02!SALL4;;chr19:23433144..23433204,-!p1@ZNF724P!1.29!81.69!ZNF724P;;chr7:27135591..27135658,-!p1@HOXA1!1.29!35.29!HOXA1;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.77!IRF6;;chr4:299227..299272,-!p1@ZNF732!1.29!18.29!ZNF732;;chr12:8045012..8045024,+!p@chr12:8045012..8045024,+!1.29!18.29!NANOGP1;;chr20:55205825..55205847,+!p2@TFAP2C!1.26!17.37!TFAP2C;;chr12:19556960..19556982,+!p10@AEBP2!1.24!16.27!AEBP2;;chr19:22966893..22966924,-!p2@ZNF99!1.24!16.27!ZNF99;;chr6:15246200..15246214,+!p2@JARID2!1.23!43.37!JARID2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.23!15.90!PEG3;;chr17:38256822..38256851,-!p1@NR1D1!1.22!120.38!NR1D1;;chr10:70320041..70320065,+!p2@TET1!1.22!15.62!TET1;;chr5:2751785..2751808,-!p2@IRX2!1.22!15.53!IRX2;;chr12:3068544..3068597,+!p1@TEAD4!1.21!89.97!TEAD4;;chr19:23941647..23941672,-!p2@ZNF681!1.21!25.18!ZNF681;;chr19:37464453..37464515,+!p4@ZNF568!1.21!15.07!ZNF568;;chr19:52408227..52408243,-!p2@ZNF649!1.20!32.81!ZNF649;;chr1:41827095..41827155,+!p1@FOXO6!1.20!20.03!FOXO6;;chr17:46622229..46622257,-!p6@HOXB2!1.20!17.28!HOXB2;;chr1:8938709..8938720,-!p3@ENO1!1.19!684.53!ENO1;;chr19:23941680..23941704,-!p1@ZNF681!1.19!41.90!ZNF681;;chr12:80084167..80084197,-!p5@PAWR!1.19!33.63!PAWR;;chr19:21950332..21950356,-!p2@ZNF100!1.19!30.78!ZNF100;;chr19:37464063..37464127,+!p2@ZNF568!1.19!19.11!ZNF568;;chr12:80084137..80084165,-!p10@PAWR!1.19!18.47!PAWR;;chr20:42295745..42295765,+!p1@MYBL2!1.18!227.90!MYBL2;;chr7:64363638..64363667,+!p1@ZNF273!1.17!68.46!ZNF273;;chr7:64023410..64023428,-!p2@ZNF680!1.17!21.87!ZNF680;;chr1:44584568..44584585,+!p3@KLF17!1.15!13.23!KLF17;;chr1:63788229..63788250,+!p1@FOXD3!1.14!12.68!FOXD3;;chr15:74833584..74833626,+!p1@ARID3B!1.13!28.95!ARID3B;;chr19:19729477..19729542,-!p1@PBX4!1.13!26.93!PBX4;;chr19:20150268..20150298,-!p2@ZNF682!1.13!23.71!ZNF682;;chr1:50889103..50889145,-!p1@DMRTA2!1.13!12.59!DMRTA2;;chr5:3595977..3595999,+!p1@IRX1!1.13!12.59!IRX1;;chr19:53289995..53290050,-!p1@ZNF600!1.12!49.62!ZNF600;;chr4:206390..206444,+!p1@ZNF876P!1.11!21.14!ZNF876P;;chr19:38042240..38042309,+!p2@ZNF540!1.11!18.38!ZNF540;;chr12:12764995..12765017,+!p3@CREBL2!1.11!16.72!CREBL2;;chr2:176957443..176957457,+!p1@HOXD13!1.11!11.95!HOXD13;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.85!TBX20;;chr19:22966925..22966958,-!p1@ZNF99!1.11!11.85!ZNF99;;chr19:20011744..20011770,+!p1@ZNF93!1.10!45.40!ZNF93;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.99!ZNF43;;chr7:64126535..64126559,+!p2@ZNF107!1.09!24.35!ZNF107;;chr1:211432784..211432796,+!p8@RCOR3!1.09!13.97!RCOR3;;chr20:55205791..55205817,+!p3@TFAP2C!1.09!11.30!TFAP2C;;chr7:64126503..64126528,+!p1@ZNF107!1.08!78.20!ZNF107;;chr21:45705733..45705743,+!p2@AIRE!1.08!11.12!AIRE;;chr8:40755333..40755352,-!p1@ZMAT4!1.07!10.75!ZMAT4;;chr10:135043750..135043761,+!p6@UTF1!1.06!10.48!UTF1;;chr8:70983506..70983522,-!p3@PRDM14!1.06!10.38!PRDM14;;chr1:211433151..211433191,+!p5@RCOR3!1.05!21.78!RCOR3;;chr1:40367668..40367684,-!p2@MYCL1!1.05!10.11!MYCL1;;chr19:12708091..12708102,-!p5@ZNF490!1.05!10.11!ZNF490;;chr12:6798692..6798723,-!p5@ZNF384!1.04!16.54!ZNF384;;chr17:41623009..41623053,-!p4@ETV4!1.04!16.45!ETV4;;chr19:20959098..20959117,+!p1@ZNF66P!1.03!40.43!ZNF66P;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.20!KLF5;;chrX:136648643..136648711,+!p2@ZIC3!1.02!9.37!ZIC3;;chr12:51566562..51566584,-!p2@TFCP2!1.01!26.47!TFCP2;;chr12:80084120..80084136,-!p15@PAWR!1.01!9.28!PAWR;;chr14:55493763..55493824,-!p1@WDHD1!1.00!68.83!WDHD1;;chr10:104154246..104154347,+!p3@NFKB2!1.00!56.61!NFKB2;;chr12:80084303..80084332,-!p1@PAWR!1.00!54.68!PAWR;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.00!20.12!SOHLH2;;chr8:144371739..144371750,+!p4@ZNF696!1.00!9.10!ZNF696;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.99!85.37!ZNF595;;chr10:21823243..21823290,+!p2@MLLT10!0.99!39.24!MLLT10;;chr17:38256877..38256900,-!p2@NR1D1!0.99!28.95!NR1D1;;chr12:12764947..12764986,+!p2@CREBL2!0.99!17.28!CREBL2;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.73!BARX1;;chrX:134477924..134477988,-!p1@ZNF75D!0.98!33.08!ZNF75D;;chr15:41913690..41913753,+!p2@MGA!0.98!21.23!MGA;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.20!GATA3;;chr3:57234000..57234014,-!p1@HESX1!0.98!8.64!HESX1;;chr12:8045030..8045044,+!p@chr12:8045030..8045044,+!0.98!8.55!NANOGP1;;chr12:54694653..54694672,-!p2@NFE2!0.98!8.45!NFE2;;chr17:41622901..41622913,-!p16@ETV4!0.98!8.45!ETV4;;chr8:128428066..128428078,+!p1@POU5F1B!0.97!8.36!POU5F1B;;chr12:85673977..85674015,+!p1@ALX1!0.97!8.36!ALX1;;chr10:104155455..104155479,+!p1@NFKB2!0.96!123.14!NFKB2;;chr7:26191809..26191890,+!p1@NFE2L3!0.96!41.08!NFE2L3;;chr2:37458749..37458766,-!p2@CEBPZ!0.96!17.64!CEBPZ;;chr11:63684602..63684664,-!p1@RCOR2!0.96!16.54!RCOR2;;chr17:41622982..41623001,-!p11@ETV4!0.96!8.18!ETV4;;chr12:57914286..57914304,-!p1@DDIT3!0.95!294.71!DDIT3;;chr1:59165724..59165751,-!p1@MYSM1!0.95!186.45!MYSM1;;chr19:52408257..52408278,-!p1@ZNF649!0.95!52.84!ZNF649;;chr12:6798731..6798751,-!p4@ZNF384!0.95!12.31!ZNF384;;chr19:12163769..12163798,-!p1@ZNF878!0.95!10.29!ZNF878;;chr16:67198683..67198698,+!p2@HSF4!0.95!7.90!HSF4;;chr1:204042233..204042249,+!p1@SOX13!0.94!50.27!SOX13;;chr12:12764917..12764931,+!p4@CREBL2!0.94!10.11!CREBL2;;chr7:148844205..148844236,+!p5@ZNF398!0.94!9.37!ZNF398;;chr6:126070769..126070801,+!p1@HEY2!0.94!9.01!HEY2;;chrX:131547625..131547644,-!p4@MBNL3!0.94!7.72!MBNL3;;chr2:176969228..176969260,+!p1@HOXD11!0.94!7.72!HOXD11;;chr12:6798616..6798684,-!p2@ZNF384!0.93!52.56!ZNF384;;chr20:42295713..42295738,+!p2@MYBL2!0.93!46.59!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.20!ZNF92;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.10!GATA3;;chr2:88752231..88752245,-!p2@FOXI3!0.93!7.54!FOXI3;;chr17:41622731..41622764,-!p5@ETV4!0.93!7.54!ETV4;;chr2:42795745..42795824,+!p1@MTA3!0.92!70.30!MTA3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.92!34.64!TAL1;;chr19:52408192..52408200,-!p4@ZNF649!0.92!7.35!ZNF649;;chr8:11561684..11561751,+!p1@GA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| |expression_enrichment_score=chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!2.56!364.91!ZNF676;;chr21:45681774..45681821,-!p1@DNMT3L!2.53!334.59!DNMT3L;;chr8:145701192..145701241,-!p1@FOXH1!2.47!294.71!FOXH1;;chr19:22193731..22193751,-!p1@ZNF208!2.26!181.22!ZNF208;;chr21:45705752..45705767,+!p1@AIRE!2.24!173.41!AIRE;;chr10:135043702..135043729,+!p1@UTF1!2.22!163.39!UTF1;;chr4:188916918..188916942,+!p1@ZFP42!2.19!153.19!ZFP42;;chr6:29648890..29648944,-!p1@ZFP57!2.18!150.43!ZFP57;;chr19:22469236..22469266,+!p1@ZNF729!2.18!149.15!ZNF729;;chr20:31350184..31350200,+!p1@DNMT3B!2.09!247.47!DNMT3B;;chr10:70320074..70320106,+!p1@TET1!2.09!235.89!TET1;;chr19:20188776..20188826,+!p1@ZNF90!2.00!255.56!ZNF90;;chr21:45681737..45681760,-!p2@DNMT3L!1.98!95.30!DNMT3L;;chr6:31138439..31138475,-!p1@POU5F1!1.98!94.47!POU5F1;;chr1:201979743..201979762,+!p1@ELF3!1.91!80.32!ELF3;;chr19:20278043..20278054,+!p2@ZNF486!1.91!80.22!ZNF486;;chr3:181429704..181429722,+!p1@SOX2!1.90!79.03!SOX2;;chr2:16081912..16081931,+!p2@MYCN!1.88!74.62!MYCN;;chr17:7493405..7493419,-!p1@SOX15!1.87!73.42!SOX15;;chr16:3149278..3149305,-!p1@ZSCAN10!1.85!70.02!ZSCAN10;;chr2:16080659..16080685,+!p1@MYCN!1.85!69.56!MYCN;;chr1:201979703..201979721,+!p2@ELF3!1.83!67.27!ELF3;;chr2:88752207..88752218,-!p1@FOXI3!1.80!62.76!FOXI3;;chr7:63505799..63505904,+!p1@ZNF727!1.80!62.03!ZNF727;;chr17:41622925..41622976,-!p3@ETV4!1.77!84.27!ETV4;;chr8:70983476..70983493,-!p1@PRDM14!1.76!56.06!PRDM14;;chr8:145701166..145701187,-!p2@FOXH1!1.69!48.15!FOXH1;;chr17:46622205..46622218,-!p3@HOXB2!1.68!53.85!HOXB2;;chr17:41622834..41622883,-!p6@ETV4!1.65!52.93!ETV4;;chr12:7941989..7942014,+!p1@NANOG!1.65!43.65!NANOG;;chr8:37963466..37963506,+!p3@ASH2L!1.64!53.12!ASH2L;;chr19:22469215..22469229,+!p2@ZNF729!1.64!42.91!ZNF729;;chr8:73921136..73921151,+!p2@TERF1!1.63!62.30!TERF1;;chr10:135043493..135043510,+!p2@UTF1!1.63!42.09!UTF1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.62!40.25!TFCP2L1;;chr12:19556998..19557013,+!p6@AEBP2!1.61!39.97!AEBP2;;chr1:44584485..44584512,+!p2@KLF17!1.59!37.95!KLF17;;chr19:20278012..20278034,+!p1@ZNF486!1.57!292.41!ZNF486;;chr12:8044970..8044999,+!p@chr12:8044970..8044999,+!1.57!36.21!NANOGP1;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.64!ZNF483;;chr21:45682241..45682265,-!p3@DNMT3L!1.54!33.73!DNMT3L;;chr19:20188831..20188844,+!p2@ZNF90!1.51!31.24!ZNF90;;chr19:22605097..22605121,-!p2@ZNF98!1.50!30.88!ZNF98;;chr8:37963407..37963454,+!p2@ASH2L!1.49!86.93!ASH2L;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.68!IRX2;;chr8:70983443..70983460,-!p2@PRDM14!1.49!29.68!PRDM14;;chr1:247171347..247171366,-!p2@ZNF695!1.48!52.10!ZNF695;;chr5:149546334..149546364,+!p1@CDX1!1.48!29.22!CDX1;;chr10:126138597..126138612,-!p1@NKX1-2!1.47!28.58!NKX1-2;;chr2:25475094..25475112,-!p3@DNMT3A!1.47!28.49!DNMT3A;;chr19:22193706..22193717,-!p2@ZNF208!1.47!28.30!ZNF208;;chr12:3069037..3069119,+!p2@TEAD4!1.45!91.16!TEAD4;;chr19:23869970..23869991,-!p1@ZNF675!1.44!97.13!ZNF675;;chr2:25475120..25475176,-!p2@DNMT3A!1.44!35.10!DNMT3A;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!1.44!26.83!ZNF676;;chr17:41622765..41622821,-!p2@ETV4!1.41!37.59!ETV4;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.63!SOX2;;chr19:22605136..22605154,-!p1@ZNF98!1.40!24.35!ZNF98;;chr14:57272369..57272391,-!p2@OTX2!1.40!24.35!OTX2;;chr7:14028743..14028799,-!p3@ETV1!1.39!29.50!ETV1;;chr1:247171316..247171336,-!p3@ZNF695!1.38!33.91!ZNF695;;chr3:185797712..185797746,-!p6@ETV5!1.38!22.97!ETV5;;chr19:22817119..22817145,+!p1@ZNF492!1.37!36.85!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!1.37!28.67!TFAP2C;;chr10:70320115..70320126,+!p3@TET1!1.37!22.61!TET1;;chr21:45681768..45681773,-!p4@DNMT3L!1.37!22.33!DNMT3L;;chr6:34204672..34204692,+!p1@HMGA1!1.36!2376.86!HMGA1;;chr17:38256799..38256815,-!p3@NR1D1!1.35!38.23!NR1D1;;chr7:64254834..64254854,+!p2@ZNF138!1.34!36.94!ZNF138;;chr19:22235279..22235301,+!p1@ZNF257!1.33!38.14!ZNF257;;chr19:45579725..45579743,-!p1@ZNF296!1.32!88.22!ZNF296;;chr2:16082155..16082169,+!p3@MYCN!1.32!19.67!MYCN;;chr19:20011775..20011800,+!p2@ZNF93!1.30!33.54!ZNF93;;chr20:50418972..50419029,-!p1@SALL4!1.30!19.02!SALL4;;chr19:23433144..23433204,-!p1@ZNF724P!1.29!81.69!ZNF724P;;chr7:27135591..27135658,-!p1@HOXA1!1.29!35.29!HOXA1;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.77!IRF6;;chr4:299227..299272,-!p1@ZNF732!1.29!18.29!ZNF732;;chr12:8045012..8045024,+!p@chr12:8045012..8045024,+!1.29!18.29!NANOGP1;;chr20:55205825..55205847,+!p2@TFAP2C!1.26!17.37!TFAP2C;;chr12:19556960..19556982,+!p10@AEBP2!1.24!16.27!AEBP2;;chr19:22966893..22966924,-!p2@ZNF99!1.24!16.27!ZNF99;;chr6:15246200..15246214,+!p2@JARID2!1.23!43.37!JARID2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.23!15.90!PEG3;;chr17:38256822..38256851,-!p1@NR1D1!1.22!120.38!NR1D1;;chr10:70320041..70320065,+!p2@TET1!1.22!15.62!TET1;;chr5:2751785..2751808,-!p2@IRX2!1.22!15.53!IRX2;;chr12:3068544..3068597,+!p1@TEAD4!1.21!89.97!TEAD4;;chr19:23941647..23941672,-!p2@ZNF681!1.21!25.18!ZNF681;;chr19:37464453..37464515,+!p4@ZNF568!1.21!15.07!ZNF568;;chr19:52408227..52408243,-!p2@ZNF649!1.20!32.81!ZNF649;;chr1:41827095..41827155,+!p1@FOXO6!1.20!20.03!FOXO6;;chr17:46622229..46622257,-!p6@HOXB2!1.20!17.28!HOXB2;;chr1:8938709..8938720,-!p3@ENO1!1.19!684.53!ENO1;;chr19:23941680..23941704,-!p1@ZNF681!1.19!41.90!ZNF681;;chr12:80084167..80084197,-!p5@PAWR!1.19!33.63!PAWR;;chr19:21950332..21950356,-!p2@ZNF100!1.19!30.78!ZNF100;;chr19:37464063..37464127,+!p2@ZNF568!1.19!19.11!ZNF568;;chr12:80084137..80084165,-!p10@PAWR!1.19!18.47!PAWR;;chr20:42295745..42295765,+!p1@MYBL2!1.18!227.90!MYBL2;;chr7:64363638..64363667,+!p1@ZNF273!1.17!68.46!ZNF273;;chr7:64023410..64023428,-!p2@ZNF680!1.17!21.87!ZNF680;;chr1:44584568..44584585,+!p3@KLF17!1.15!13.23!KLF17;;chr1:63788229..63788250,+!p1@FOXD3!1.14!12.68!FOXD3;;chr15:74833584..74833626,+!p1@ARID3B!1.13!28.95!ARID3B;;chr19:19729477..19729542,-!p1@PBX4!1.13!26.93!PBX4;;chr19:20150268..20150298,-!p2@ZNF682!1.13!23.71!ZNF682;;chr1:50889103..50889145,-!p1@DMRTA2!1.13!12.59!DMRTA2;;chr5:3595977..3595999,+!p1@IRX1!1.13!12.59!IRX1;;chr19:53289995..53290050,-!p1@ZNF600!1.12!49.62!ZNF600;;chr4:206390..206444,+!p1@ZNF876P!1.11!21.14!ZNF876P;;chr19:38042240..38042309,+!p2@ZNF540!1.11!18.38!ZNF540;;chr12:12764995..12765017,+!p3@CREBL2!1.11!16.72!CREBL2;;chr2:176957443..176957457,+!p1@HOXD13!1.11!11.95!HOXD13;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.85!TBX20;;chr19:22966925..22966958,-!p1@ZNF99!1.11!11.85!ZNF99;;chr19:20011744..20011770,+!p1@ZNF93!1.10!45.40!ZNF93;;chr19:22034809..22034878,-!p2@ZNF43!1.10!40.99!ZNF43;;chr7:64126535..64126559,+!p2@ZNF107!1.09!24.35!ZNF107;;chr1:211432784..211432796,+!p8@RCOR3!1.09!13.97!RCOR3;;chr20:55205791..55205817,+!p3@TFAP2C!1.09!11.30!TFAP2C;;chr7:64126503..64126528,+!p1@ZNF107!1.08!78.20!ZNF107;;chr21:45705733..45705743,+!p2@AIRE!1.08!11.12!AIRE;;chr8:40755333..40755352,-!p1@ZMAT4!1.07!10.75!ZMAT4;;chr10:135043750..135043761,+!p6@UTF1!1.06!10.48!UTF1;;chr8:70983506..70983522,-!p3@PRDM14!1.06!10.38!PRDM14;;chr1:211433151..211433191,+!p5@RCOR3!1.05!21.78!RCOR3;;chr1:40367668..40367684,-!p2@MYCL1!1.05!10.11!MYCL1;;chr19:12708091..12708102,-!p5@ZNF490!1.05!10.11!ZNF490;;chr12:6798692..6798723,-!p5@ZNF384!1.04!16.54!ZNF384;;chr17:41623009..41623053,-!p4@ETV4!1.04!16.45!ETV4;;chr19:20959098..20959117,+!p1@ZNF66P!1.03!40.43!ZNF66P;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.20!KLF5;;chrX:136648643..136648711,+!p2@ZIC3!1.02!9.37!ZIC3;;chr12:51566562..51566584,-!p2@TFCP2!1.01!26.47!TFCP2;;chr12:80084120..80084136,-!p15@PAWR!1.01!9.28!PAWR;;chr14:55493763..55493824,-!p1@WDHD1!1.00!68.83!WDHD1;;chr10:104154246..104154347,+!p3@NFKB2!1.00!56.61!NFKB2;;chr12:80084303..80084332,-!p1@PAWR!1.00!54.68!PAWR;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.00!20.12!SOHLH2;;chr8:144371739..144371750,+!p4@ZNF696!1.00!9.10!ZNF696;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.99!85.37!ZNF595;;chr10:21823243..21823290,+!p2@MLLT10!0.99!39.24!MLLT10;;chr17:38256877..38256900,-!p2@NR1D1!0.99!28.95!NR1D1;;chr12:12764947..12764986,+!p2@CREBL2!0.99!17.28!CREBL2;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.73!BARX1;;chrX:134477924..134477988,-!p1@ZNF75D!0.98!33.08!ZNF75D;;chr15:41913690..41913753,+!p2@MGA!0.98!21.23!MGA;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.20!GATA3;;chr3:57234000..57234014,-!p1@HESX1!0.98!8.64!HESX1;;chr12:8045030..8045044,+!p@chr12:8045030..8045044,+!0.98!8.55!NANOGP1;;chr12:54694653..54694672,-!p2@NFE2!0.98!8.45!NFE2;;chr17:41622901..41622913,-!p16@ETV4!0.98!8.45!ETV4;;chr8:128428066..128428078,+!p1@POU5F1B!0.97!8.36!POU5F1B;;chr12:85673977..85674015,+!p1@ALX1!0.97!8.36!ALX1;;chr10:104155455..104155479,+!p1@NFKB2!0.96!123.14!NFKB2;;chr7:26191809..26191890,+!p1@NFE2L3!0.96!41.08!NFE2L3;;chr2:37458749..37458766,-!p2@CEBPZ!0.96!17.64!CEBPZ;;chr11:63684602..63684664,-!p1@RCOR2!0.96!16.54!RCOR2;;chr17:41622982..41623001,-!p11@ETV4!0.96!8.18!ETV4;;chr12:57914286..57914304,-!p1@DDIT3!0.95!294.71!DDIT3;;chr1:59165724..59165751,-!p1@MYSM1!0.95!186.45!MYSM1;;chr19:52408257..52408278,-!p1@ZNF649!0.95!52.84!ZNF649;;chr12:6798731..6798751,-!p4@ZNF384!0.95!12.31!ZNF384;;chr19:12163769..12163798,-!p1@ZNF878!0.95!10.29!ZNF878;;chr16:67198683..67198698,+!p2@HSF4!0.95!7.90!HSF4;;chr1:204042233..204042249,+!p1@SOX13!0.94!50.27!SOX13;;chr12:12764917..12764931,+!p4@CREBL2!0.94!10.11!CREBL2;;chr7:148844205..148844236,+!p5@ZNF398!0.94!9.37!ZNF398;;chr6:126070769..126070801,+!p1@HEY2!0.94!9.01!HEY2;;chrX:131547625..131547644,-!p4@MBNL3!0.94!7.72!MBNL3;;chr2:176969228..176969260,+!p1@HOXD11!0.94!7.72!HOXD11;;chr12:6798616..6798684,-!p2@ZNF384!0.93!52.56!ZNF384;;chr20:42295713..42295738,+!p2@MYBL2!0.93!46.59!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.20!ZNF92;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.10!GATA3;;chr2:88752231..88752245,-!p2@FOXI3!0.93!7.54!FOXI3;;chr17:41622731..41622764,-!p5@ETV4!0.93!7.54!ETV4;;chr2:42795745..42795824,+!p1@MTA3!0.92!70.30!MTA3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.92!34.64!TAL1;;chr19:52408192..52408200,-!p4@ZNF649!0.92!7.35!ZNF649;;chr8:11561684..11561751,+!p1@GA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317!0.41!22.42!ZNF317;;chr9:99540335..99540388,-!p1@ZNF510!0.41!16.82!ZNF510;;chr20:49547691..49547724,-!p2@ADNP!0.41!13.88!ADNP;;chr19:56652643..56652683,+!p1@ZNF444!0.41!12.22!ZNF444;;chr19:53836985..53837024,+!p1@ZNF845!0.41!10.94!ZNF845;;chr12:57400261..57400344,-!p1@ZBTB39!0.41!10.57!ZBTB39;;chr9:117160738..117160782,-!p2@AKNA!0.41!9.01!AKNA;;chr6:28411241..28411284,-!p1@ZSCAN23!0.41!6.62!ZSCAN23;;chr17:4890695..4890773,-!p2@CAMTA2!0.41!6.62!CAMTA2;;chr1:211433275..211433335,+!p2@RCOR3!0.41!6.52!RCOR3;;chr19:21203481..21203504,+!p2@ZNF430!0.41!4.69!ZNF430;;chr1:211432887..211432903,+!p4@RCOR3!0.41!4.59!RCOR3;;chr7:74072256..74072279,+!p3@GTF2I!0.41!4.04!GTF2I;;chr12:57400227..57400245,-!p2@ZBTB39!0.41!3.77!ZBTB39;;chr18:56532100..56532130,+!p1@ZNF532!0.41!3.58!ZNF532;;chr19:12075844..12075880,+!p3@ZNF763!0.41!3.22!ZNF763;;chr8:57123873..57123894,-!p2@PLAG1!0.41!2.57!PLAG1;;chr3:44754176..44754196,+!p2@ZNF502!0.41!2.48!ZNF502;;chr1:211432872..211432883,+!p7@RCOR3!0.41!2.30!RCOR3;;chr1:93811637..93811648,+!p6@DR1!0.41!2.02!DR1;;chr9:110250697..110250738,-!p2@KLF4!0.41!2.02!KLF4;;chr18:3447572..3447603,+!p17@TGIF1!0.41!1.93!TGIF1;;chr12:3068196..3068232,+!p9@TEAD4!0.41!1.75!TEAD4;;chr12:10870927..10870966,-!p5@CSDA!0.41!1.56!CSDA;;chr14:37131058..37131139,+!p1@PAX9!0.41!1.56!PAX9;;chr5:124082548..124082571,-!p9@ZNF608!0.41!1.56!ZNF608;;chr5:134369643..134369675,-!p4@PITX1!0.41!1.56!PITX1;;chr6:100061724..100061753,+!p1@PRDM13!0.41!1.56!PRDM13;;chr8:93115274..93115323,-!p4@RUNX1T1!0.41!1.56!RUNX1T1;;chr2:171571931..171571959,+!p3@SP5!0.41!1.56!SP5;;chr2:176957417..176957431,+!p2@HOXD13!0.41!1.56!HOXD13;;chr3:138665937..138665968,-!p1@FOXL2!0.41!1.56!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.41!1.56!FOXL2;;chr15:67458861..67458879,+!p17@SMAD3!0.41!1.56!SMAD3;;chr19:12267577..12267593,-!p3@ZNF625!0.41!1.56!ZNF625;;chr1:3607228..3607250,+!p8@TP73!0.41!1.56!TP73;;chr19:12721725..12721758,+!p1@ZNF791!0.40!39.88!ZNF791;;chr19:21688387..21688432,+!p1@ZNF429!0.40!13.32!ZNF429;;chr6:7107999..7108031,+!p2@RREB1!0.40!11.58!RREB1;;chr19:58694742..58694800,+!p2@ZNF274!0.40!8.55!ZNF274;;chr1:43148792..43148849,+!p2@YBX1!0.40!8.09!YBX1;;chr19:37178482..37178520,+!p1@ZNF567!0.40!5.42!ZNF567;;chr6:43337375..43337410,-!p3@ZNF318!0.40!4.59!ZNF318;;chr5:132299008..132299026,-!p5@AFF4!0.40!4.41!AFF4;;chr3:185826814..185826825,-!p3@ETV5!0.40!3.49!ETV5;;chr20:48807779..48807802,+!p10@CEBPB!0.40!3.03!CEBPB;;chr18:47814010..47814021,-!p3@CXXC1!0.40!3.03!CXXC1;;chr3:48282607..48282618,+!p3@ZNF589!0.40!2.30!ZNF589;;chrX:119384749..119384763,+!p4@ZBTB33!0.40!2.21!ZBTB33;;chr6:15245797..15245818,+!p8@JARID2!0.40!2.02!JARID2;;chr18:3447617..3447633,+!p20@TGIF1!0.40!1.75!TGIF1;;chr19:21324829..21324855,+!p1@ZNF431!0.39!35.56!ZNF431;;chr17:79885576..79885624,-!p1@MAFG!0.39!25.09!MAFG;;chr4:95128999..95129056,+!p2@SMARCAD1!0.39!23.16!SMARCAD1;;chr19:52598958..52599026,-!p1@ZNF841!0.39!20.77!ZNF841;;chr1:205601093..205601158,-!p1@ELK4!0.39!19.48!ELK4;;chr18:77867139..77867176,+!p1@ADNP2!0.39!16.54!ADNP2;;chr21:47063625..47063658,+!p1@PCBP3!0.39!9.19!PCBP3;;chr19:37096194..37096235,+!p1@ZNF382!0.39!6.43!ZNF382;;chr19:53636125..53636178,-!p1@ZNF415!0.39!5.61!ZNF415;;chr3:44754126..44754171,+!p1@ZNF502!0.39!4.78!ZNF502;;chrX:70586082..70586093,+!p2@TAF1!0.39!3.31!TAF1;;chr17:47439354..47439383,-!p3@ZNF652!0.39!2.85!ZNF652;;chr1:247242107..247242120,-!p2@ZNF670!0.39!2.76!ZNF670;;chr8:81398682..81398697,+!p6@ZBTB10!0.39!2.21!ZBTB10;;chr12:80083807..80083859,-!p11@PAWR!0.39!2.02!PAWR;;chr10:102989206..102989222,-!p1@LBX1!0.39!1.47!LBX1;;chr12:57504069..57504090,-!p7@STAT6!0.39!1.47!STAT6;;chr13:112721490..112721504,+!p2@SOX1!0.39!1.47!SOX1;;chr7:35293665..35293680,-!p2@TBX20!0.39!1.47!TBX20;;chr15:67458491..67458505,+!p18@SMAD3!0.39!1.47!SMAD3;;chr16:51185318..51185348,-!p2@SALL1!0.39!1.47!SALL1;;chr16:51185363..51185381,-!p4@SALL1!0.39!1.47!SALL1;;chrX:56258900..56258917,+!p4@KLF8!0.39!1.47!KLF8;;chr9:127358120..127358170,-!p3@NR6A1!0.39!1.47!NR6A1;;chr1:24645921..24645973,+!p2@GRHL3!0.39!1.47!GRHL3;;chr1:44584530..44584537,+!p6@KLF17!0.39!1.47!KLF17;;chr7:64467057..64467078,-!p1@ZNF117!0.38!39.88!ZNF117;;chr16:3162557..3162600,+!p1@ZNF205!0.38!18.01!ZNF205;;chr19:37064145..37064216,-!p1@ZNF529!0.38!17.83!ZNF529;;chr7:1570322..1570360,+!p1@MAFK!0.38!17.83!MAFK;;chr15:60884706..60884743,-!p1@RORA!0.38!10.57!RORA;;chr19:53758094..53758147,-!p1@ZNF677!0.38!7.63!ZNF677;;chr19:53758058..53758088,-!p2@ZNF677!0.38!6.52!ZNF677;;chr19:58220517..58220583,-!p1@ZNF154!0.38!6.25!ZNF154;;chr21:27107726..27107772,+!p4@GABPA!0.38!6.16!GABPA;;chr12:133613937..133613994,+!p2@ZNF84!0.38!4.50!ZNF84;;chr6:42419514..42419606,-!p1@TRERF1!0.38!4.14!TRERF1;;chr12:53574338..53574358,+!p2@ZNF740!0.38!3.49!ZNF740;;chr18:3449527..3449582,+!p6@TGIF1!0.38!3.40!TGIF1;;chr1:26496459..26496470,+!p2@ZNF593!0.38!3.40!ZNF593;;chr17:79885633..79885645,-!p4@MAFG!0.38!2.94!MAFG;;chr16:29818199..29818216,+!p11@MAZ!0.38!2.85!MAZ;;chr6:28367481..28367506,-!p2@ZSCAN12!0.38!2.66!ZSCAN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| ||
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC15.CNhs12362.10593-108D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10593-108D8 | |id=FF:10593-108D8 | ||
|is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922 | |is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12362 | |||
|library_id_phase_based=2:CNhs12362 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10593 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10593 | |||
|name=testicular germ cell embryonal carcinoma cell line:NEC15 | |name=testicular germ cell embryonal carcinoma cell line:NEC15 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12362,LSID914,release011,COMPLETED | |profile_hcage=CNhs12362,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.0381808373167472,0,-0.160318030086386,0,-0.0866469120276698,0.189302524543779,0,0,0,0,0,0,0,0,1.19087476249875,0,0.135952613269937,0.0732745932580414,0,-0.11514217303168,0,0,0,0,0,0.294795035622949,0,0,0.150106841791889,0,0,0,0,0,0,0,0,0,0,0,0,-0.199218508893755,0.0732745932580414,0,0,0.0381808373167472,0,0,0,0,0.426179660084483,0,0,0,0,0,0,0,0.0389602520273319,0,0,-0.0591627898963497,0,0,0,0,0.164196510686744,0,0,0,0.0381808373167472,0,0,0,0,0,0,0,0,0,0,0,0.135952613269937,0,0,0,0.0381808373167472,0,0.359176636688202,0.0381808373167472,0.186970298735158,-0.092461850723476,0,0,0,0,0.00770799510886032,0.342208559799926,0,0,0,0.831830031683254,0,0,0.105743346346567,0,0,0,0.3130818420957,0.0381808373167472,0,0,0,0,0,0.46727295928901,0.105743346346567,0,0,-0.0764506620704105,-0.22631311524936,0.0381808373167472,0,0.105743346346567,0,0,0 | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 79: | ||
|rna_tube_id=108D8 | |rna_tube_id=108D8 | ||
|rna_weight_ug=102.42 | |rna_weight_ug=102.42 | ||
|rnaseq_library_id=RDhi10074 | |||
|sample_age=20 | |sample_age=20 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0494 | |sample_cell_catalog=RCB0494 | ||
|sample_cell_line=NEC15 | |sample_cell_line=NEC15 | ||
| Line 80: | Line 103: | ||
|top_motifs=OCT4_SOX2{dimer}:3.56068307166;bHLH_family:1.9493681649;TP53:1.88128485793;STAT1,3:1.75301395896;SNAI1..3:1.59097311849;NKX2-3_NKX2-5:1.46327795477;MYOD1:1.42838913823;XCPE1{core}:1.37443948952;CUX2:1.34804887517;TOPORS:1.27737718048;ZEB1:1.26425372882;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.24992690641;SP1:1.22130237533;SREBF1,2:1.18118898111;PATZ1:1.11340499721;PITX1..3:1.10132004395;MTF1:1.04461402359;TFAP2{A,C}:1.02546210018;ONECUT1,2:0.991054658472;NRF1:0.970251937648;RORA:0.955560187804;LEF1_TCF7_TCF7L1,2:0.94825766056;MAZ:0.942451578888;NFY{A,B,C}:0.890100090752;PAX2:0.888562268643;SOX2:0.850609146901;TBX4,5:0.823817728314;STAT5{A,B}:0.761486170838;ZNF143:0.742698865576;VSX1,2:0.689390254441;HIF1A:0.672272653459;ELK1,4_GABP{A,B1}:0.598930322855;LMO2:0.595882435555;RBPJ:0.586120563519;FOXN1:0.579715432065;ESRRA:0.567421712254;ATF4:0.54178685191;IKZF2:0.506792386864;TFAP2B:0.504722261145;FOXM1:0.480269381063;PAX8:0.475814775246;E2F1..5:0.475506668986;ALX1:0.44113080362;PAX1,9:0.440070281537;TEAD1:0.439551367156;MZF1:0.414051432529;SOX17:0.39607954821;GFI1:0.393184208559;TFDP1:0.384600131111;GTF2I:0.363524809997;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.340346987031;FOXQ1:0.329807075879;SOX{8,9,10}:0.320538204569;HSF1,2:0.284712443067;ZBTB16:0.270355188051;MYB:0.267050720077;POU5F1:0.245483839283;ZFP161:0.230773227286;FOX{F1,F2,J1}:0.201951578807;EGR1..3:0.200621987836;BREu{core}:0.199231151919;FOXP1:0.194845261738;EBF1:0.185860408227;CDX1,2,4:0.177322601746;TLX2:0.15560480819;ZNF384:0.133533930748;CDC5L:0.112696857267;RREB1:0.111822948509;ATF5_CREB3:0.0855566051543;HNF4A_NR2F1,2:0.0787095770348;NKX6-1,2:0.06404215009;GZF1:0.0512549305056;FOXD3:0.0124209723512;PRRX1,2:0.00884470640299;GATA6:0.00790462977337;POU2F1..3:-0.00810695593372;ADNP_IRX_SIX_ZHX:-0.0215550358257;ZBTB6:-0.038648762649;MED-1{core}:-0.0549693507103;TBP:-0.0806637282628;YY1:-0.0970193377142;NFE2L2:-0.121190903351;NANOG:-0.146563133945;CRX:-0.153743280474;ZNF148:-0.166611005299;CREB1:-0.174986614859;AIRE:-0.187702609909;FOS_FOS{B,L1}_JUN{B,D}:-0.195897089745;FOSL2:-0.200479631804;HNF1A:-0.222336488463;NFIX:-0.22884033212;EVI1:-0.244514674749;PRDM1:-0.248256132074;PBX1:-0.252261809739;KLF4:-0.255460569356;AHR_ARNT_ARNT2:-0.256283059534;NHLH1,2:-0.257458825531;REST:-0.264626077724;EP300:-0.26771481251;HOX{A4,D4}:-0.278241786189;BACH2:-0.279405594309;NKX2-1,4:-0.318742024244;NFE2:-0.329009453679;ZIC1..3:-0.340766404149;MYFfamily:-0.354343616202;ATF2:-0.377295819615;NFKB1_REL_RELA:-0.388320756125;TFCP2:-0.391648553158;T:-0.423007322986;UFEwm:-0.430716364262;HMX1:-0.439548597572;AR:-0.441066440204;MAFB:-0.442629080218;HOX{A5,B5}:-0.447295166547;NR5A1,2:-0.447915511762;FOXO1,3,4:-0.458442526383;POU1F1:-0.47615841823;CEBPA,B_DDIT3:-0.485562775923;SPZ1:-0.48672921735;FOXP3:-0.487513026745;TEF:-0.487896052744;HLF:-0.49112977273;SPI1:-0.502325485006;GATA4:-0.522409849995;HOX{A6,A7,B6,B7}:-0.529449384305;FOXA2:-0.543210880993;GCM1,2:-0.544603349346;ZNF423:-0.546719967595;LHX3,4:-0.580563259598;MYBL2:-0.5867960301;TFAP4:-0.601245179599;ARID5B:-0.604209807252;ETS1,2:-0.60451559583;FOX{D1,D2}:-0.634577151622;SPIB:-0.635473653499;RFX1:-0.67187892183;RFX2..5_RFXANK_RFXAP:-0.677671109053;MTE{core}:-0.696587122114;NKX3-2:-0.715773700675;MEF2{A,B,C,D}:-0.718408296105;PAX5:-0.718941197635;GFI1B:-0.719221690609;FOX{I1,J2}:-0.723524470722;IKZF1:-0.745714101926;POU6F1:-0.750083488702;ELF1,2,4:-0.751656933103;TLX1..3_NFIC{dimer}:-0.774362552992;EN1,2:-0.780874512501;SOX5:-0.84843299568;NANOG{mouse}:-0.858433414682;RXR{A,B,G}:-0.87113622455;XBP1:-0.891721857063;NFIL3:-0.902732328863;TGIF1:-0.908391432709;DMAP1_NCOR{1,2}_SMARC:-0.920410752609;HOXA9_MEIS1:-0.934637812436;RUNX1..3:-0.936612560363;IRF7:-0.948081603177;HES1:-0.948731473965;PAX3,7:-0.973707697887;NFATC1..3:-0.97946309235;JUN:-0.984814150695;SRF:-0.995954907782;BPTF:-1.0025780827;HIC1:-1.00271725066;PAX4:-1.00968672723;PDX1:-1.09530747636;NR6A1:-1.13214577174;STAT2,4,6:-1.13784002986;POU3F1..4:-1.1741070198;HAND1,2:-1.18135635893;HMGA1,2:-1.19246850347;TAL1_TCF{3,4,12}:-1.20470741256;SMAD1..7,9:-1.21928485322;NR3C1:-1.25307614997;ESR1:-1.29449502297;HBP1_HMGB_SSRP1_UBTF:-1.34108455234;DBP:-1.37104112116;NR1H4:-1.3751473157;ZNF238:-1.38454763301;ATF6:-1.41127364597;IRF1,2:-1.51539214946;NKX2-2,8:-1.54058690524;PPARG:-1.54598015561;GTF2A1,2:-1.57012334534;GLI1..3:-1.59649688711;NKX3-1:-1.71374231308;RXRA_VDR{dimer}:-1.74717507009;FOXL1:-1.77929415866;ALX4:-1.83957223847;NFE2L1:-2.12287476155;PAX6:-2.15639830872 | |top_motifs=OCT4_SOX2{dimer}:3.56068307166;bHLH_family:1.9493681649;TP53:1.88128485793;STAT1,3:1.75301395896;SNAI1..3:1.59097311849;NKX2-3_NKX2-5:1.46327795477;MYOD1:1.42838913823;XCPE1{core}:1.37443948952;CUX2:1.34804887517;TOPORS:1.27737718048;ZEB1:1.26425372882;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.24992690641;SP1:1.22130237533;SREBF1,2:1.18118898111;PATZ1:1.11340499721;PITX1..3:1.10132004395;MTF1:1.04461402359;TFAP2{A,C}:1.02546210018;ONECUT1,2:0.991054658472;NRF1:0.970251937648;RORA:0.955560187804;LEF1_TCF7_TCF7L1,2:0.94825766056;MAZ:0.942451578888;NFY{A,B,C}:0.890100090752;PAX2:0.888562268643;SOX2:0.850609146901;TBX4,5:0.823817728314;STAT5{A,B}:0.761486170838;ZNF143:0.742698865576;VSX1,2:0.689390254441;HIF1A:0.672272653459;ELK1,4_GABP{A,B1}:0.598930322855;LMO2:0.595882435555;RBPJ:0.586120563519;FOXN1:0.579715432065;ESRRA:0.567421712254;ATF4:0.54178685191;IKZF2:0.506792386864;TFAP2B:0.504722261145;FOXM1:0.480269381063;PAX8:0.475814775246;E2F1..5:0.475506668986;ALX1:0.44113080362;PAX1,9:0.440070281537;TEAD1:0.439551367156;MZF1:0.414051432529;SOX17:0.39607954821;GFI1:0.393184208559;TFDP1:0.384600131111;GTF2I:0.363524809997;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.340346987031;FOXQ1:0.329807075879;SOX{8,9,10}:0.320538204569;HSF1,2:0.284712443067;ZBTB16:0.270355188051;MYB:0.267050720077;POU5F1:0.245483839283;ZFP161:0.230773227286;FOX{F1,F2,J1}:0.201951578807;EGR1..3:0.200621987836;BREu{core}:0.199231151919;FOXP1:0.194845261738;EBF1:0.185860408227;CDX1,2,4:0.177322601746;TLX2:0.15560480819;ZNF384:0.133533930748;CDC5L:0.112696857267;RREB1:0.111822948509;ATF5_CREB3:0.0855566051543;HNF4A_NR2F1,2:0.0787095770348;NKX6-1,2:0.06404215009;GZF1:0.0512549305056;FOXD3:0.0124209723512;PRRX1,2:0.00884470640299;GATA6:0.00790462977337;POU2F1..3:-0.00810695593372;ADNP_IRX_SIX_ZHX:-0.0215550358257;ZBTB6:-0.038648762649;MED-1{core}:-0.0549693507103;TBP:-0.0806637282628;YY1:-0.0970193377142;NFE2L2:-0.121190903351;NANOG:-0.146563133945;CRX:-0.153743280474;ZNF148:-0.166611005299;CREB1:-0.174986614859;AIRE:-0.187702609909;FOS_FOS{B,L1}_JUN{B,D}:-0.195897089745;FOSL2:-0.200479631804;HNF1A:-0.222336488463;NFIX:-0.22884033212;EVI1:-0.244514674749;PRDM1:-0.248256132074;PBX1:-0.252261809739;KLF4:-0.255460569356;AHR_ARNT_ARNT2:-0.256283059534;NHLH1,2:-0.257458825531;REST:-0.264626077724;EP300:-0.26771481251;HOX{A4,D4}:-0.278241786189;BACH2:-0.279405594309;NKX2-1,4:-0.318742024244;NFE2:-0.329009453679;ZIC1..3:-0.340766404149;MYFfamily:-0.354343616202;ATF2:-0.377295819615;NFKB1_REL_RELA:-0.388320756125;TFCP2:-0.391648553158;T:-0.423007322986;UFEwm:-0.430716364262;HMX1:-0.439548597572;AR:-0.441066440204;MAFB:-0.442629080218;HOX{A5,B5}:-0.447295166547;NR5A1,2:-0.447915511762;FOXO1,3,4:-0.458442526383;POU1F1:-0.47615841823;CEBPA,B_DDIT3:-0.485562775923;SPZ1:-0.48672921735;FOXP3:-0.487513026745;TEF:-0.487896052744;HLF:-0.49112977273;SPI1:-0.502325485006;GATA4:-0.522409849995;HOX{A6,A7,B6,B7}:-0.529449384305;FOXA2:-0.543210880993;GCM1,2:-0.544603349346;ZNF423:-0.546719967595;LHX3,4:-0.580563259598;MYBL2:-0.5867960301;TFAP4:-0.601245179599;ARID5B:-0.604209807252;ETS1,2:-0.60451559583;FOX{D1,D2}:-0.634577151622;SPIB:-0.635473653499;RFX1:-0.67187892183;RFX2..5_RFXANK_RFXAP:-0.677671109053;MTE{core}:-0.696587122114;NKX3-2:-0.715773700675;MEF2{A,B,C,D}:-0.718408296105;PAX5:-0.718941197635;GFI1B:-0.719221690609;FOX{I1,J2}:-0.723524470722;IKZF1:-0.745714101926;POU6F1:-0.750083488702;ELF1,2,4:-0.751656933103;TLX1..3_NFIC{dimer}:-0.774362552992;EN1,2:-0.780874512501;SOX5:-0.84843299568;NANOG{mouse}:-0.858433414682;RXR{A,B,G}:-0.87113622455;XBP1:-0.891721857063;NFIL3:-0.902732328863;TGIF1:-0.908391432709;DMAP1_NCOR{1,2}_SMARC:-0.920410752609;HOXA9_MEIS1:-0.934637812436;RUNX1..3:-0.936612560363;IRF7:-0.948081603177;HES1:-0.948731473965;PAX3,7:-0.973707697887;NFATC1..3:-0.97946309235;JUN:-0.984814150695;SRF:-0.995954907782;BPTF:-1.0025780827;HIC1:-1.00271725066;PAX4:-1.00968672723;PDX1:-1.09530747636;NR6A1:-1.13214577174;STAT2,4,6:-1.13784002986;POU3F1..4:-1.1741070198;HAND1,2:-1.18135635893;HMGA1,2:-1.19246850347;TAL1_TCF{3,4,12}:-1.20470741256;SMAD1..7,9:-1.21928485322;NR3C1:-1.25307614997;ESR1:-1.29449502297;HBP1_HMGB_SSRP1_UBTF:-1.34108455234;DBP:-1.37104112116;NR1H4:-1.3751473157;ZNF238:-1.38454763301;ATF6:-1.41127364597;IRF1,2:-1.51539214946;NKX2-2,8:-1.54058690524;PPARG:-1.54598015561;GTF2A1,2:-1.57012334534;GLI1..3:-1.59649688711;NKX3-1:-1.71374231308;RXRA_VDR{dimer}:-1.74717507009;FOXL1:-1.77929415866;ALX4:-1.83957223847;NFE2L1:-2.12287476155;PAX6:-2.15639830872 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10593-108D8;search_select_hide=table117:FF:10593-108D8 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | testicular germ cell embryonal carcinoma cell line:NEC15 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12362 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12362
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12362
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0827 |
| 10 | 10 | 0.0576 |
| 100 | 100 | 0.749 |
| 101 | 101 | 0.351 |
| 102 | 102 | 0.408 |
| 103 | 103 | 0.0222 |
| 104 | 104 | 0.46 |
| 105 | 105 | 0.622 |
| 106 | 106 | 0.00432 |
| 107 | 107 | 0.112 |
| 108 | 108 | 0.876 |
| 109 | 109 | 0.087 |
| 11 | 11 | 0.12 |
| 110 | 110 | 0.1 |
| 111 | 111 | 0.0104 |
| 112 | 112 | 0.483 |
| 113 | 113 | 0.143 |
| 114 | 114 | 0.0184 |
| 115 | 115 | 0.856 |
| 116 | 116 | 0.319 |
| 117 | 117 | 0.481 |
| 118 | 118 | 0.995 |
| 119 | 119 | 0.0508 |
| 12 | 12 | 0.993 |
| 120 | 120 | 0.1 |
| 121 | 121 | 0.923 |
| 122 | 122 | 0.76 |
| 123 | 123 | 0.613 |
| 124 | 124 | 0.0148 |
| 125 | 125 | 0.306 |
| 126 | 126 | 0.839 |
| 127 | 127 | 0.27 |
| 128 | 128 | 0.189 |
| 129 | 129 | 0.381 |
| 13 | 13 | 0.553 |
| 130 | 130 | 0.983 |
| 131 | 131 | 0.68 |
| 132 | 132 | 0.897 |
| 133 | 133 | 0.00303 |
| 134 | 134 | 0.0734 |
| 135 | 135 | 0.0604 |
| 136 | 136 | 0.288 |
| 137 | 137 | 0.565 |
| 138 | 138 | 0.0498 |
| 139 | 139 | 0.0843 |
| 14 | 14 | 0.929 |
| 140 | 140 | 0.489 |
| 141 | 141 | 0.42 |
| 142 | 142 | 0.529 |
| 143 | 143 | 6.61868e-4 |
| 144 | 144 | 0.205 |
| 145 | 145 | 0.0564 |
| 146 | 146 | 0.214 |
| 147 | 147 | 0.783 |
| 148 | 148 | 5.23473e-4 |
| 149 | 149 | 0.00262 |
| 15 | 15 | 0.0366 |
| 150 | 150 | 0.383 |
| 151 | 151 | 0.0701 |
| 152 | 152 | 0.947 |
| 153 | 153 | 0.791 |
| 154 | 154 | 0.469 |
| 155 | 155 | 0.395 |
| 156 | 156 | 0.0161 |
| 157 | 157 | 0.879 |
| 158 | 158 | 0.594 |
| 159 | 159 | 0.593 |
| 16 | 16 | 0.318 |
| 160 | 160 | 0.18 |
| 161 | 161 | 0.673 |
| 162 | 162 | 0.767 |
| 163 | 163 | 0.676 |
| 164 | 164 | 0.804 |
| 165 | 165 | 0.674 |
| 166 | 166 | 0.35 |
| 167 | 167 | 0.104 |
| 168 | 168 | 0.564 |
| 169 | 169 | 0.05 |
| 17 | 17 | 0.395 |
| 18 | 18 | 0.443 |
| 19 | 19 | 0.0663 |
| 2 | 2 | 0.835 |
| 20 | 20 | 0.892 |
| 21 | 21 | 0.55 |
| 22 | 22 | 0.476 |
| 23 | 23 | 0.21 |
| 24 | 24 | 0.799 |
| 25 | 25 | 0.578 |
| 26 | 26 | 0.234 |
| 27 | 27 | 0.973 |
| 28 | 28 | 0.495 |
| 29 | 29 | 0.467 |
| 3 | 3 | 0.048 |
| 30 | 30 | 0.921 |
| 31 | 31 | 0.723 |
| 32 | 32 | 9.69948e-4 |
| 33 | 33 | 0.473 |
| 34 | 34 | 0.747 |
| 35 | 35 | 0.194 |
| 36 | 36 | 0.144 |
| 37 | 37 | 0.395 |
| 38 | 38 | 0.608 |
| 39 | 39 | 0.248 |
| 4 | 4 | 0.998 |
| 40 | 40 | 0.489 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.293 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.49 |
| 45 | 45 | 0.759 |
| 46 | 46 | 0.113 |
| 47 | 47 | 0.984 |
| 48 | 48 | 0.601 |
| 49 | 49 | 0.0984 |
| 5 | 5 | 0.0541 |
| 50 | 50 | 0.599 |
| 51 | 51 | 0.8 |
| 52 | 52 | 0.766 |
| 53 | 53 | 0.987 |
| 54 | 54 | 0.836 |
| 55 | 55 | 0.269 |
| 56 | 56 | 0.92 |
| 57 | 57 | 0.54 |
| 58 | 58 | 0.072 |
| 59 | 59 | 0.278 |
| 6 | 6 | 0.91 |
| 60 | 60 | 0.119 |
| 61 | 61 | 0.637 |
| 62 | 62 | 0.0288 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.365 |
| 65 | 65 | 0.225 |
| 66 | 66 | 0.448 |
| 67 | 67 | 0.534 |
| 68 | 68 | 0.169 |
| 69 | 69 | 0.986 |
| 7 | 7 | 0.588 |
| 70 | 70 | 0.022 |
| 71 | 71 | 0.0166 |
| 72 | 72 | 0.305 |
| 73 | 73 | 0.299 |
| 74 | 74 | 0.728 |
| 75 | 75 | 0.349 |
| 76 | 76 | 0.972 |
| 77 | 77 | 0.294 |
| 78 | 78 | 0.828 |
| 79 | 79 | 0.19 |
| 8 | 8 | 0.0134 |
| 80 | 80 | 0.3 |
| 81 | 81 | 0.0995 |
| 82 | 82 | 0.0281 |
| 83 | 83 | 0.194 |
| 84 | 84 | 0.806 |
| 85 | 85 | 0.268 |
| 86 | 86 | 0.699 |
| 87 | 87 | 0.129 |
| 88 | 88 | 0.19 |
| 89 | 89 | 0.0547 |
| 9 | 9 | 0.156 |
| 90 | 90 | 0.0745 |
| 91 | 91 | 0.16 |
| 92 | 92 | 0.174 |
| 93 | 93 | 0.904 |
| 94 | 94 | 0.507 |
| 95 | 95 | 0.813 |
| 96 | 96 | 0.0241 |
| 97 | 97 | 0.685 |
| 98 | 98 | 0.265 |
| 99 | 99 | 0.695 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12362
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000586 germ cell
DOID:3095 germ cell and embryonal cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
UBERON:0000473 testis
UBERON:0000922 embryo
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
