FF:11302-117B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005050 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005050 | ||
|accession_numbers=CAGE;DRX008294;DRR009166;DRZ000591;DRZ001976;DRZ011941;DRZ013326 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037167;DRR041533;DRZ007175 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000254 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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2F2!0.13!0.82!NR2F2;;chr12:80083722..80083766,-!p12@PAWR!0.13!0.82!PAWR;;chr13:41635486..41635497,-!p11@ELF1!0.13!0.82!ELF1;;chr2:176033027..176033050,-!p3@ATF2!0.13!0.82!ATF2;;chr2:192015701..192015743,-!p1@STAT4!0.13!0.82!STAT4;;chr3:170075124..170075136,+!p4@SKIL!0.13!0.82!SKIL;;chr2:176033054..176033065,-!p4@ATF2!0.13!0.55!ATF2;;chr4:81105027..81105039,+!p3@PRDM8!0.13!0.55!PRDM8;;chr20:44600184..44600198,-!p6@ZNF335!0.13!0.55!ZNF335;;chr10:3824229..3824253,-!p7@KLF6!0.13!0.55!KLF6;;chr11:65430535..65430549,-!p4@RELA!0.13!0.55!RELA;;chr6:20402070..20402082,+!p5@E2F3!0.13!0.55!E2F3;;chr6:44355325..44355340,+!p4@CDC5L!0.13!0.55!CDC5L;;chr7:99679311..99679322,-!p3@ZNF3!0.13!0.55!ZNF3;;chr12:56753869..56753930,-!p1@STAT2!0.12!52.91!STAT2;;chr2:176032843..176032941,-!p1@ATF2!0.12!48.28!ATF2;;chr14:24630465..24630531,+!p1@IRF9!0.12!45.55!IRF9;;chrX:53254373..53254406,-!p1@KDM5C!0.12!43.64!KDM5C;;chr14:89029366..89029425,+!p1@ZC3H14!0.12!27.55!ZC3H14;;chr3:71114066..71114114,-!p1@FOXP1!0.12!24.00!FOXP1;;chr1:67390665..67390698,+!p1@MIER1!0.12!15.82!MIER1;;chr18:32870260..32870293,+!p1@ZNF271!0.12!14.46!ZNF271;;chr4:95128748..95128794,+!p1@SMARCAD1!0.12!14.18!SMARCAD1;;chr6:41514305..41514359,+!p2@FOXP4!0.12!9.27!FOXP4;;chr14:74226961..74227020,-!p1@C14orf43!0.12!7.09!C14orf43;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.12!6.82!SNAPC4;;chr16:30537839..30537929,-!p1@ZNF768!0.12!6.82!ZNF768;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.12!4.64!TAL1;;chr19:12251144..12251181,-!p2@ZNF20!0.12!4.36!ZNF20;;chr18:5296001..5296045,-!p1@ZFP161!0.12!3.82!ZFP161;;chr12:54019757..54019804,-!p2@ATF7!0.12!3.82!ATF7;;chr2:174828836..174828885,-!p5@SP3!0.12!3.55!SP3;;chr8:37963407..37963454,+!p2@ASH2L!0.12!2.73!ASH2L;;chr8:116681409..116681431,-!p2@TRPS1!0.12!2.45!TRPS1;;chr8:67525473..67525518,-!p1@MYBL1!0.12!1.91!MYBL1;;chr11:64073006..64073017,+!p3@ESRRA!0.12!1.91!ESRRA;;chr1:935398..935465,-!p2@HES4!0.12!1.64!HES4;;chr19:15560730..15560772,-!p3@WIZ!0.12!1.64!WIZ;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.12!1.64!ZNF322;;chr8:42698494..42698507,-!p3@THAP1!0.12!1.36!THAP1;;chr1:200379180..200379191,-!p3@ZNF281!0.12!1.36!ZNF281;;chr3:185826814..185826825,-!p3@ETV5!0.12!1.36!ETV5;;chr15:56535468..56535521,-!p2@RFX7!0.12!1.36!RFX7;;chr15:100106670..100106697,+!p4@MEF2A!0.12!1.09!MEF2A;;chr15:96875657..96875760,+!p14@NR2F2!0.12!1.09!NR2F2;;chr16:68119440..68119480,+!p4@NFATC3!0.12!1.09!NFATC3;;chr19:12551785..12551823,-!p1@ZNF443!0.12!1.09!ZNF443;;chr1:27022578..27022589,+!p5@ARID1A!0.12!1.09!ARID1A;;chr6:21594845..21594908,+!p6@SOX4!0.12!1.09!SOX4;;chr7:86782094..86782108,+!p5@DMTF1!0.12!1.09!DMTF1;;chr10:21823381..21823399,+!p4@MLLT10!0.12!1.09!MLLT10;;chr10:3824332..3824425,-!p4@KLF6!0.12!1.09!KLF6;;chr12:6798692..6798723,-!p5@ZNF384!0.12!1.09!ZNF384;;chr2:231084723..231084734,-!p4@SP110!0.12!1.09!SP110;;chr6:108882364..108882391,+!p4@FOXO3!0.12!0.82!FOXO3;;chr7:104752306..104752335,+!p4@MLL5!0.12!0.82!MLL5;;chr15:67358128..67358133,+!p12@SMAD3!0.12!0.82!SMAD3;;chr19:53324884..53324886,-!p1@ZNF28!0.12!0.82!ZNF28;;chr1:42800614..42800649,-!p5@FOXJ3!0.12!0.82!FOXJ3;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.12!0.55!ZNF551;;chr1:235491168..235491187,-!p3@ARID4B!0.12!0.55!ARID4B;;chr15:96869222..96869251,+!p18@NR2F2!0.12!0.55!NR2F2;;chr17:38256695..38256706,-!p7@NR1D1!0.12!0.55!NR1D1;;chr19:36545320..36545335,-!p5@THAP8!0.12!0.55!THAP8;;chr4:81104958..81104981,+!p5@PRDM8!0.12!0.55!PRDM8;;chr5:72743793..72743855,-!p4@FOXD1!0.12!0.55!FOXD1;;chr7:111846777..111846804,+!p2@ZNF277!0.12!0.55!ZNF277;;chr7:77428282..77428293,+!p4@PHTF2!0.12!0.55!PHTF2;;chr9:110250697..110250738,-!p2@KLF4!0.12!0.55!KLF4;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11302-117B6 | |id=FF:11302-117B6 | ||
|is_a=EFO:0002091;;FF:0000254 | |is_a=EFO:0002091;;FF:0000254 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11896 | |||
|library_id_phase_based=2:CNhs11896 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11302 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACAGTG.11302 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11302 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACAGTG.11302 | |||
|name=Gingival epithelial cells, donor2 (GEA14) | |name=Gingival epithelial cells, donor2 (GEA14) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11896,LSID834,release010,COMPLETED | |profile_hcage=CNhs11896,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.0523708909774295,0,0,0.160032779752338,0.104741781954859,0.261050104183376,-0.282403560576942,0,0,0,0,0,0,0,0,0.259650816408929,0,0.791141385265455,0,0,-0.0485812283935684,0,0,0,0.269206118188445,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.92242156638749,0,0.0362965822158815,0,0,0,1.11397105627074,0,0,0,0,0.07031839344757,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.0917232019077114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104741781954859,0,0,0,0,0,0,0.0186007921656478,0,0,0,0,0,0,0,-0.0225481731538968,0.104166677953069,0.0523708909774295,0.189066829120808,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0334518142820037,0,0,0,0.150924886300781,0.465214392761809,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 58: | Line 82: | ||
|rna_tube_id=117B6 | |rna_tube_id=117B6 | ||
|rna_weight_ug=8.12834 | |rna_weight_ug=8.12834 | ||
|rnaseq_library_id=SRhi10011.ACAGTG | |||
|sample_age=38 | |sample_age=38 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485 | |top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11302-117B6;search_select_hide=table117:FF:11302-117B6 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Gingival epithelial cells, donor2 (GEA14) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11896 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11896
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11896
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.963 |
| 10 | 10 | 0.332 |
| 100 | 100 | 0.555 |
| 101 | 101 | 0.189 |
| 102 | 102 | 0.45 |
| 103 | 103 | 0.13 |
| 104 | 104 | 0.866 |
| 105 | 105 | 0.136 |
| 106 | 106 | 0.151 |
| 107 | 107 | 0.0663 |
| 108 | 108 | 0.824 |
| 109 | 109 | 0.0131 |
| 11 | 11 | 0.249 |
| 110 | 110 | 0.484 |
| 111 | 111 | 0.361 |
| 112 | 112 | 0.156 |
| 113 | 113 | 0.25 |
| 114 | 114 | 0.346 |
| 115 | 115 | 0.534 |
| 116 | 116 | 0.745 |
| 117 | 117 | 0.288 |
| 118 | 118 | 0.871 |
| 119 | 119 | 0.361 |
| 12 | 12 | 0.891 |
| 120 | 120 | 0.102 |
| 121 | 121 | 0.292 |
| 122 | 122 | 0.54 |
| 123 | 123 | 0.792 |
| 124 | 124 | 0.0655 |
| 125 | 125 | 0.249 |
| 126 | 126 | 0.348 |
| 127 | 127 | 0.224 |
| 128 | 128 | 0.941 |
| 129 | 129 | 0.103 |
| 13 | 13 | 0.0415 |
| 130 | 130 | 0.718 |
| 131 | 131 | 0.489 |
| 132 | 132 | 0.34 |
| 133 | 133 | 0.0071 |
| 134 | 134 | 0.279 |
| 135 | 135 | 0.636 |
| 136 | 136 | 0.0307 |
| 137 | 137 | 0.117 |
| 138 | 138 | 0.923 |
| 139 | 139 | 0.367 |
| 14 | 14 | 0.838 |
| 140 | 140 | 0.678 |
| 141 | 141 | 0.806 |
| 142 | 142 | 0.708 |
| 143 | 143 | 0.471 |
| 144 | 144 | 0.224 |
| 145 | 145 | 0.12 |
| 146 | 146 | 0.0138 |
| 147 | 147 | 0.114 |
| 148 | 148 | 0.855 |
| 149 | 149 | 0.825 |
| 15 | 15 | 0.881 |
| 150 | 150 | 0.0709 |
| 151 | 151 | 0.573 |
| 152 | 152 | 0.00639 |
| 153 | 153 | 0.971 |
| 154 | 154 | 0.982 |
| 155 | 155 | 0.827 |
| 156 | 156 | 0.991 |
| 157 | 157 | 0.136 |
| 158 | 158 | 0.117 |
| 159 | 159 | 0.476 |
| 16 | 16 | 0.0639 |
| 160 | 160 | 0.625 |
| 161 | 161 | 0.656 |
| 162 | 162 | 0.309 |
| 163 | 163 | 0.494 |
| 164 | 164 | 0.898 |
| 165 | 165 | 0.489 |
| 166 | 166 | 0.37 |
| 167 | 167 | 0.0877 |
| 168 | 168 | 0.2 |
| 169 | 169 | 0.11 |
| 17 | 17 | 0.342 |
| 18 | 18 | 0.414 |
| 19 | 19 | 0.701 |
| 2 | 2 | 0.442 |
| 20 | 20 | 0.575 |
| 21 | 21 | 0.678 |
| 22 | 22 | 0.591 |
| 23 | 23 | 0.15 |
| 24 | 24 | 0.0259 |
| 25 | 25 | 0.944 |
| 26 | 26 | 0.732 |
| 27 | 27 | 0.698 |
| 28 | 28 | 0.522 |
| 29 | 29 | 0.871 |
| 3 | 3 | 0.38 |
| 30 | 30 | 0.143 |
| 31 | 31 | 0.912 |
| 32 | 32 | 0.327 |
| 33 | 33 | 0.147 |
| 34 | 34 | 0.587 |
| 35 | 35 | 0.0725 |
| 36 | 36 | 0.563 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.506 |
| 39 | 39 | 0.167 |
| 4 | 4 | 0.932 |
| 40 | 40 | 0.0763 |
| 41 | 41 | 0.742 |
| 42 | 42 | 0.432 |
| 43 | 43 | 0.615 |
| 44 | 44 | 0.923 |
| 45 | 45 | 0.0209 |
| 46 | 46 | 0.721 |
| 47 | 47 | 0.317 |
| 48 | 48 | 0.121 |
| 49 | 49 | 0.479 |
| 5 | 5 | 0.904 |
| 50 | 50 | 0.42 |
| 51 | 51 | 0.826 |
| 52 | 52 | 0.0833 |
| 53 | 53 | 0.526 |
| 54 | 54 | 0.655 |
| 55 | 55 | 0.0913 |
| 56 | 56 | 0.393 |
| 57 | 57 | 0.56 |
| 58 | 58 | 0.801 |
| 59 | 59 | 0.48 |
| 6 | 6 | 0.458 |
| 60 | 60 | 0.177 |
| 61 | 61 | 0.686 |
| 62 | 62 | 0.856 |
| 63 | 63 | 0.168 |
| 64 | 64 | 0.747 |
| 65 | 65 | 0.934 |
| 66 | 66 | 0.227 |
| 67 | 67 | 0.735 |
| 68 | 68 | 0.145 |
| 69 | 69 | 0.759 |
| 7 | 7 | 0.372 |
| 70 | 70 | 0.165 |
| 71 | 71 | 0.56 |
| 72 | 72 | 0.954 |
| 73 | 73 | 0.00228 |
| 74 | 74 | 0.077 |
| 75 | 75 | 0.323 |
| 76 | 76 | 0.998 |
| 77 | 77 | 0.0327 |
| 78 | 78 | 0.0149 |
| 79 | 79 | 0.365 |
| 8 | 8 | 0.804 |
| 80 | 80 | 0.515 |
| 81 | 81 | 0.196 |
| 82 | 82 | 0.571 |
| 83 | 83 | 0.608 |
| 84 | 84 | 0.974 |
| 85 | 85 | 0.557 |
| 86 | 86 | 0.77 |
| 87 | 87 | 7.29673e-4 |
| 88 | 88 | 0.816 |
| 89 | 89 | 0.154 |
| 9 | 9 | 0.832 |
| 90 | 90 | 0.43 |
| 91 | 91 | 0.764 |
| 92 | 92 | 0.715 |
| 93 | 93 | 0.52 |
| 94 | 94 | 0.46 |
| 95 | 95 | 0.27 |
| 96 | 96 | 0.86 |
| 97 | 97 | 0.31 |
| 98 | 98 | 0.718 |
| 99 | 99 | 0.0955 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11896
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
