FF:10160-103A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005634 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005634!sRNA-Seq@SAMD00005634 | |||
|HumanCAGEScanFiles=NCig10031;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008707;DRR009579;DRZ001004;DRZ002389;DRZ012354;DRZ013739 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057154;DRR062913;DRZ007989!sRNA-Seq;DRX037340;DRR041706;DRZ007348 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010160 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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| |expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001905;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10160-103A7 | |id=FF:10160-103A7 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010160 | |is_a=EFO:0002091;;FF:0000002;;FF:0010160 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12228 | |||
|library_id_phase_based=2:CNhs12228 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10160 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.ACTTGA.10160 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10160 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.ACTTGA.10160 | |||
|name=pineal gland, adult, donor10252 | |name=pineal gland, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 66: | ||
|profile_cagescan=NCig10031,,, | |profile_cagescan=NCig10031,,, | ||
|profile_hcage=CNhs12228,LSID852,release009,COMPLETED | |profile_hcage=CNhs12228,LSID852,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 83: | ||
|rna_tube_id=103A7 | |rna_tube_id=103A7 | ||
|rna_weight_ug=57.168 | |rna_weight_ug=57.168 | ||
|rnaseq_library_id=RDhi10097!SRhi10006.ACTTGA | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 107: | ||
|top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505 | |top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10160-103A7;search_select_hide=table117:FF:10160-103A7 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | pineal gland, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12228 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12228
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12228
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.143 |
| 10 | 10 | 0.0538 |
| 100 | 100 | 0.212 |
| 101 | 101 | 0.766 |
| 102 | 102 | 0.95 |
| 103 | 103 | 0.0347 |
| 104 | 104 | 0.191 |
| 105 | 105 | 0.816 |
| 106 | 106 | 0.00426 |
| 107 | 107 | 0.00833 |
| 108 | 108 | 0.631 |
| 109 | 109 | 0.00785 |
| 11 | 11 | 0.028 |
| 110 | 110 | 0.0982 |
| 111 | 111 | 0.0415 |
| 112 | 112 | 0.791 |
| 113 | 113 | 0.437 |
| 114 | 114 | 0.308 |
| 115 | 115 | 0.654 |
| 116 | 116 | 0.292 |
| 117 | 117 | 0.031 |
| 118 | 118 | 0.0458 |
| 119 | 119 | 0.236 |
| 12 | 12 | 0.935 |
| 120 | 120 | 0.153 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.827 |
| 123 | 123 | 0.811 |
| 124 | 124 | 0.294 |
| 125 | 125 | 0.576 |
| 126 | 126 | 0.365 |
| 127 | 127 | 0.883 |
| 128 | 128 | 0.0795 |
| 129 | 129 | 0.352 |
| 13 | 13 | 0.0193 |
| 130 | 130 | 0.551 |
| 131 | 131 | 0.0668 |
| 132 | 132 | 0.506 |
| 133 | 133 | 0.0625 |
| 134 | 134 | 0.539 |
| 135 | 135 | 0.88 |
| 136 | 136 | 0.00727 |
| 137 | 137 | 0.833 |
| 138 | 138 | 0.332 |
| 139 | 139 | 0.55 |
| 14 | 14 | 0.752 |
| 140 | 140 | 0.116 |
| 141 | 141 | 0.504 |
| 142 | 142 | 0.68 |
| 143 | 143 | 0.133 |
| 144 | 144 | 0.571 |
| 145 | 145 | 0.0881 |
| 146 | 146 | 0.309 |
| 147 | 147 | 0.365 |
| 148 | 148 | 0.033 |
| 149 | 149 | 0.187 |
| 15 | 15 | 0.0338 |
| 150 | 150 | 0.192 |
| 151 | 151 | 0.462 |
| 152 | 152 | 0.0186 |
| 153 | 153 | 0.884 |
| 154 | 154 | 0.732 |
| 155 | 155 | 0.749 |
| 156 | 156 | 0.498 |
| 157 | 157 | 0.368 |
| 158 | 158 | 0.0159 |
| 159 | 159 | 0.0066 |
| 16 | 16 | 0.0526 |
| 160 | 160 | 0.0375 |
| 161 | 161 | 0.0753 |
| 162 | 162 | 0.497 |
| 163 | 163 | 0.593 |
| 164 | 164 | 0.0176 |
| 165 | 165 | 0.0505 |
| 166 | 166 | 0.819 |
| 167 | 167 | 0.412 |
| 168 | 168 | 0.588 |
| 169 | 169 | 0.019 |
| 17 | 17 | 0.0348 |
| 18 | 18 | 0.0952 |
| 19 | 19 | 0.224 |
| 2 | 2 | 0.716 |
| 20 | 20 | 0.264 |
| 21 | 21 | 0.186 |
| 22 | 22 | 0.254 |
| 23 | 23 | 0.202 |
| 24 | 24 | 0.158 |
| 25 | 25 | 0.398 |
| 26 | 26 | 4.92845e-4 |
| 27 | 27 | 0.604 |
| 28 | 28 | 0.812 |
| 29 | 29 | 0.0114 |
| 3 | 3 | 0.0927 |
| 30 | 30 | 0.807 |
| 31 | 31 | 0.867 |
| 32 | 32 | 0.0067 |
| 33 | 33 | 0.076 |
| 34 | 34 | 0.64 |
| 35 | 35 | 0.807 |
| 36 | 36 | 0.164 |
| 37 | 37 | 0.083 |
| 38 | 38 | 0.332 |
| 39 | 39 | 0.173 |
| 4 | 4 | 0.996 |
| 40 | 40 | 0.0253 |
| 41 | 41 | 0.153 |
| 42 | 42 | 0.461 |
| 43 | 43 | 0.117 |
| 44 | 44 | 0.136 |
| 45 | 45 | 0.714 |
| 46 | 46 | 0.0492 |
| 47 | 47 | 0.183 |
| 48 | 48 | 0.136 |
| 49 | 49 | 0.227 |
| 5 | 5 | 0.37 |
| 50 | 50 | 0.3 |
| 51 | 51 | 0.302 |
| 52 | 52 | 0.277 |
| 53 | 53 | 0.855 |
| 54 | 54 | 0.36 |
| 55 | 55 | 0.789 |
| 56 | 56 | 0.487 |
| 57 | 57 | 0.179 |
| 58 | 58 | 0.376 |
| 59 | 59 | 0.0546 |
| 6 | 6 | 0.686 |
| 60 | 60 | 0.0538 |
| 61 | 61 | 0.0605 |
| 62 | 62 | 0.377 |
| 63 | 63 | 0.0564 |
| 64 | 64 | 0.414 |
| 65 | 65 | 0.12 |
| 66 | 66 | 0.218 |
| 67 | 67 | 0.36 |
| 68 | 68 | 0.12 |
| 69 | 69 | 0.0411 |
| 7 | 7 | 0.168 |
| 70 | 70 | 0.00411 |
| 71 | 71 | 0.0118 |
| 72 | 72 | 0.655 |
| 73 | 73 | 0.0244 |
| 74 | 74 | 0.767 |
| 75 | 75 | 0.0639 |
| 76 | 76 | 0.282 |
| 77 | 77 | 0.159 |
| 78 | 78 | 0.0745 |
| 79 | 79 | 0.365 |
| 8 | 8 | 0.00915 |
| 80 | 80 | 0.843 |
| 81 | 81 | 0.256 |
| 82 | 82 | 0.648 |
| 83 | 83 | 0.17 |
| 84 | 84 | 0.415 |
| 85 | 85 | 0.0853 |
| 86 | 86 | 0.5 |
| 87 | 87 | 8.57144e-5 |
| 88 | 88 | 0.917 |
| 89 | 89 | 0.151 |
| 9 | 9 | 0.632 |
| 90 | 90 | 0.241 |
| 91 | 91 | 0.575 |
| 92 | 92 | 0.301 |
| 93 | 93 | 0.911 |
| 94 | 94 | 0.0702 |
| 95 | 95 | 0.015 |
| 96 | 96 | 0.767 |
| 97 | 97 | 0.698 |
| 98 | 98 | 0.205 |
| 99 | 99 | 0.477 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12228
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010160 human pineal gland - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
