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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004990
|accession_numbers=CAGE;DRX008755;DRR009627;DRZ001052;DRZ002437;DRZ012402;DRZ013787
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002331,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000478,UBERON:0010317
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002331,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000478,UBERON:0010317
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.07!117.32!NKX2-5;;chr4:174451370..174451387,-!p1@HAND2!2.06!114.97!HAND2;;chr20:50179368..50179392,-!p2@NFATC2!2.04!138.44!NFATC2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.20!PEG3;;chr19:46801639..46801699,+!p1@HIF3A!1.98!93.86!HIF3A;;chr1:40105299..40105326,-!p1@HEYL!1.88!75.09!HEYL;;chr12:52437488..52437507,+!p2@NR4A1!1.76!56.31!NR4A1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.24!HOXC5;;chr4:57547454..57547469,-!p1@HOPX!1.64!42.24!HOPX;;chr20:62680984..62680999,-!p1@SOX18!1.63!53.97!SOX18;;chr4:111544219..111544240,-!p1@PITX2!1.59!37.54!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.56!35.20!GATA4;;chr1:201979703..201979721,+!p2@ELF3!1.53!32.85!ELF3;;chr7:35293685..35293718,-!p1@TBX20!1.46!28.16!TBX20;;chr19:45971246..45971265,+!p1@FOSB!1.45!488.05!FOSB;;chr15:42749722..42749739,-!p2@ZFP106!1.44!46.93!ZFP106;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.81!ELF3;;chr4:111558135..111558198,-!p2@PITX2!1.43!25.81!PITX2;;chr4:174451350..174451363,-!p3@HAND2!1.43!25.81!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.43!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.39!23.46!FOXS1;;chr14:105935396..105935413,+!p4@MTA1!1.39!23.46!MTA1;;chr6:126070769..126070801,+!p1@HEY2!1.37!25.81!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.35!30.50!ZBTB16;;chr8:106330656..106330684,+!p1@ZFPM2!1.34!53.97!ZFPM2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.12!TCF21;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.12!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.32!28.16!GATA6;;chr6:19837592..19837621,+!p1@ID4!1.31!114.97!ID4;;chr16:73093174..73093209,-!p3@ZFHX3!1.31!25.81!ZFHX3;;chr5:158526917..158526932,-!p1@EBF1!1.30!46.93!EBF1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.30!18.77!SEBOX;;chr2:176969228..176969260,+!p1@HOXD11!1.30!18.77!HOXD11;;chr10:119302232..119302265,+!p1@EMX2!1.30!18.77!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.30!18.77!SPI1;;chr14:38064429..38064486,-!p1@FOXA1!1.30!18.77!FOXA1;;chr14:75745523..75745537,+!p1@FOS!1.27!2029.64!FOS;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.16!CREB3L1;;chr10:119303078..119303169,+!p2@EMX2!1.24!16.42!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.24!16.42!EHF;;chr4:57522598..57522664,-!p3@HOPX!1.24!16.42!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.42!KDM5D;;chr6:144289132..144289134,-!p3@PLAGL1!1.21!35.20!PLAGL1;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!164.25!PLAGL1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.77!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.19!16.42!TCF4;;chr7:42276787..42276815,-!p1@GLI3!1.18!37.54!GLI3;;chr5:158527104..158527135,-!p4@EBF1!1.18!14.08!EBF1;;chr8:102504979..102505010,+!p2@GRHL2!1.18!14.08!GRHL2;;chr19:46800289..46800327,+!p2@HIF3A!1.18!14.08!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.18!14.08!ERG;;chr11:125034640..125034655,+!p1@PKNOX2!1.18!14.08!PKNOX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.42!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.12!21.12!ZEB2;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.12!TBX18;;chr18:19749517..19749531,+!p3@GATA6!1.11!21.12!GATA6;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.42!PROX1;;chr10:8096631..8096660,+!p1@GATA3!1.10!14.08!GATA3;;chr10:119302508..119302559,+!p5@EMX2!1.10!11.73!EMX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.73!ZBTB16;;chr12:54779511..54779577,-!p5@ZNF385A!1.10!11.73!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.10!11.73!IRX2;;chr5:50679228..50679288,+!p1@ISL1!1.10!11.73!ISL1;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.73!SPDEF;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.73!EBF2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.73!RUNX1T1;;chr2:119605214..119605230,-!p1@EN1!1.10!11.73!EN1;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.73!IRF6;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.73!DLX3;;chr5:137804484..137804498,+!p2@EGR1!1.08!44.58!EGR1;;chr14:75746722..75746777,+!p2@FOS!1.08!14.08!FOS;;chr12:24715376..24715432,-!p1@SOX5!1.08!14.08!SOX5;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.73!GLIS1;;chr16:79634624..79634642,-!p1@MAF!1.07!42.24!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.06!44.58!CEBPA;;chr16:79634595..79634620,-!p2@MAF!1.05!18.77!MAF;;chr3:12330560..12330579,+!p1@PPARG!1.05!11.73!PPARG;;chr6:1312325..1312340,+!p1@FOXQ1!1.04!16.42!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.27!CREB3L1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.39!EMX2;;chr11:129245526..129245553,+!p1@BARX2!1.02!9.39!BARX2;;chr11:65554528..65554546,+!p1@OVOL1!1.02!9.39!OVOL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.39!HOXC5;;chr12:56414795..56414836,+!p4@IKZF4!1.02!9.39!IKZF4;;chr13:37494248..37494260,-!p3@SMAD9!1.02!9.39!SMAD9;;chr22:38380543..38380569,-!p1@SOX10!1.02!9.39!SOX10;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.39!TFCP2L1;;chr3:181429704..181429722,+!p1@SOX2!1.02!9.39!SOX2;;chr1:2985760..2985774,+!p1@PRDM16!1.02!9.39!PRDM16;;chr1:40367668..40367684,-!p2@MYCL1!1.02!9.39!MYCL1;;chr5:158527139..158527161,-!p5@EBF1!1.02!9.39!EBF1;;chr5:172662303..1726623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|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.07!117.32!NKX2-5;;chr4:174451370..174451387,-!p1@HAND2!2.06!114.97!HAND2;;chr20:50179368..50179392,-!p2@NFATC2!2.04!138.44!NFATC2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.20!PEG3;;chr19:46801639..46801699,+!p1@HIF3A!1.98!93.86!HIF3A;;chr1:40105299..40105326,-!p1@HEYL!1.88!75.09!HEYL;;chr12:52437488..52437507,+!p2@NR4A1!1.76!56.31!NR4A1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.24!HOXC5;;chr4:57547454..57547469,-!p1@HOPX!1.64!42.24!HOPX;;chr20:62680984..62680999,-!p1@SOX18!1.63!53.97!SOX18;;chr4:111544219..111544240,-!p1@PITX2!1.59!37.54!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.56!35.20!GATA4;;chr1:201979703..201979721,+!p2@ELF3!1.53!32.85!ELF3;;chr7:35293685..35293718,-!p1@TBX20!1.46!28.16!TBX20;;chr19:45971246..45971265,+!p1@FOSB!1.45!488.05!FOSB;;chr15:42749722..42749739,-!p2@ZFP106!1.44!46.93!ZFP106;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.81!ELF3;;chr4:111558135..111558198,-!p2@PITX2!1.43!25.81!PITX2;;chr4:174451350..174451363,-!p3@HAND2!1.43!25.81!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.43!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.39!23.46!FOXS1;;chr14:105935396..105935413,+!p4@MTA1!1.39!23.46!MTA1;;chr6:126070769..126070801,+!p1@HEY2!1.37!25.81!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.35!30.50!ZBTB16;;chr8:106330656..106330684,+!p1@ZFPM2!1.34!53.97!ZFPM2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.12!TCF21;;chr4:174450089..174450153,-!p2@HAND2!1.34!21.12!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.32!28.16!GATA6;;chr6:19837592..19837621,+!p1@ID4!1.31!114.97!ID4;;chr16:73093174..73093209,-!p3@ZFHX3!1.31!25.81!ZFHX3;;chr5:158526917..158526932,-!p1@EBF1!1.30!46.93!EBF1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.30!18.77!SEBOX;;chr2:176969228..176969260,+!p1@HOXD11!1.30!18.77!HOXD11;;chr10:119302232..119302265,+!p1@EMX2!1.30!18.77!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.30!18.77!SPI1;;chr14:38064429..38064486,-!p1@FOXA1!1.30!18.77!FOXA1;;chr14:75745523..75745537,+!p1@FOS!1.27!2029.64!FOS;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.16!CREB3L1;;chr10:119303078..119303169,+!p2@EMX2!1.24!16.42!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.24!16.42!EHF;;chr4:57522598..57522664,-!p3@HOPX!1.24!16.42!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.42!KDM5D;;chr6:144289132..144289134,-!p3@PLAGL1!1.21!35.20!PLAGL1;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!164.25!PLAGL1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.77!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.19!16.42!TCF4;;chr7:42276787..42276815,-!p1@GLI3!1.18!37.54!GLI3;;chr5:158527104..158527135,-!p4@EBF1!1.18!14.08!EBF1;;chr8:102504979..102505010,+!p2@GRHL2!1.18!14.08!GRHL2;;chr19:46800289..46800327,+!p2@HIF3A!1.18!14.08!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.18!14.08!ERG;;chr11:125034640..125034655,+!p1@PKNOX2!1.18!14.08!PKNOX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.42!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.12!21.12!ZEB2;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.12!TBX18;;chr18:19749517..19749531,+!p3@GATA6!1.11!21.12!GATA6;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.42!PROX1;;chr10:8096631..8096660,+!p1@GATA3!1.10!14.08!GATA3;;chr10:119302508..119302559,+!p5@EMX2!1.10!11.73!EMX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.73!ZBTB16;;chr12:54779511..54779577,-!p5@ZNF385A!1.10!11.73!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.10!11.73!IRX2;;chr5:50679228..50679288,+!p1@ISL1!1.10!11.73!ISL1;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.73!SPDEF;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.73!EBF2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.73!RUNX1T1;;chr2:119605214..119605230,-!p1@EN1!1.10!11.73!EN1;;chr1:209979411..209979433,-!p2@IRF6!1.10!11.73!IRF6;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.73!DLX3;;chr5:137804484..137804498,+!p2@EGR1!1.08!44.58!EGR1;;chr14:75746722..75746777,+!p2@FOS!1.08!14.08!FOS;;chr12:24715376..24715432,-!p1@SOX5!1.08!14.08!SOX5;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.73!GLIS1;;chr16:79634624..79634642,-!p1@MAF!1.07!42.24!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.06!44.58!CEBPA;;chr16:79634595..79634620,-!p2@MAF!1.05!18.77!MAF;;chr3:12330560..12330579,+!p1@PPARG!1.05!11.73!PPARG;;chr6:1312325..1312340,+!p1@FOXQ1!1.04!16.42!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.27!CREB3L1;;chr10:119302268..119302282,+!p4@EMX2!1.02!9.39!EMX2;;chr11:129245526..129245553,+!p1@BARX2!1.02!9.39!BARX2;;chr11:65554528..65554546,+!p1@OVOL1!1.02!9.39!OVOL1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.39!HOXC5;;chr12:56414795..56414836,+!p4@IKZF4!1.02!9.39!IKZF4;;chr13:37494248..37494260,-!p3@SMAD9!1.02!9.39!SMAD9;;chr22:38380543..38380569,-!p1@SOX10!1.02!9.39!SOX10;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.39!TFCP2L1;;chr3:181429704..181429722,+!p1@SOX2!1.02!9.39!SOX2;;chr1:2985760..2985774,+!p1@PRDM16!1.02!9.39!PRDM16;;chr1:40367668..40367684,-!p2@MYCL1!1.02!9.39!MYCL1;;chr5:158527139..158527161,-!p5@EBF1!1.02!9.39!EBF1;;chr5:172662303..1726623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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=UBERON:0000358,UBERON:0002532,UBERON:0006603,UBERON:0010316
|ffid_belonging_in_development=UBERON:0000358,UBERON:0002532,UBERON:0006603,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.ctss.bed.gz
|id=FF:10057-101H3
|id=FF:10057-101H3
|is_a=EFO:0002091;;FF:0010057
|is_a=EFO:0002091;;FF:0010057
|is_obsolete=
|is_obsolete=
|library_id=CNhs11765
|library_id_phase_based=2:CNhs11765
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10057
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10057
|name=umbilical cord, fetal, donor1
|name=umbilical cord, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11765,LSID820,release009,COMPLETED
|profile_hcage=CNhs11765,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:RtHFN: Umbilical cor
|rna_catalog_number=Cat:RtHFN: Umbilical cor
Line 61: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 82: Line 101:
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|top_motifs=TBP:4.41655543587;SRF:3.76166410562;MEF2{A,B,C,D}:3.51728702547;NR5A1,2:2.99200778611;RXRA_VDR{dimer}:2.43995913892;TFAP4:2.43584921547;NFE2L1:2.27627030121;MAFB:2.22437039523;GATA4:2.18393483382;ESR1:2.12886942792;SPZ1:2.12473612535;SMAD1..7,9:2.12266663009;GCM1,2:2.04228641492;GLI1..3:1.97296605673;NR1H4:1.91414844576;NR3C1:1.91060036648;NR6A1:1.8872516527;HOX{A4,D4}:1.85020135538;ZNF423:1.8266556914;TFCP2:1.80204616159;TFAP2{A,C}:1.78137872057;IKZF1:1.7067461301;TEAD1:1.67316672777;MYBL2:1.58990863455;KLF4:1.58767864337;GATA6:1.46207806635;FOXL1:1.45488020301;NKX3-1:1.43407152884;XBP1:1.42852839902;AR:1.42298595322;TBX4,5:1.38802814777;TAL1_TCF{3,4,12}:1.34276243999;ZNF238:1.30523928928;ZNF384:1.30390932958;ESRRA:1.27198155422;RORA:1.2646221095;TOPORS:1.24128238353;SOX5:1.18367056696;FOXA2:1.15863833634;SNAI1..3:1.15664362104;GTF2A1,2:1.13077640295;FOXM1:1.1228767854;PRDM1:1.11923651628;HAND1,2:1.07039253853;FOX{I1,J2}:1.06751125944;IKZF2:1.05545137533;TEF:1.05491058248;NKX3-2:0.997695381277;NFATC1..3:0.963800977467;LHX3,4:0.945877062846;UFEwm:0.935476735468;PATZ1:0.911759107123;MZF1:0.901124897733;MAZ:0.878657903973;HIC1:0.874839319568;ZEB1:0.869135959415;GTF2I:0.85910067734;MTE{core}:0.818377664437;PAX5:0.804767291335;ZIC1..3:0.804633325176;HOXA9_MEIS1:0.800020643835;TLX1..3_NFIC{dimer}:0.799529173534;FOXO1,3,4:0.771298678072;ZNF148:0.746064380468;MED-1{core}:0.728189114419;HOX{A5,B5}:0.713872602235;FOX{D1,D2}:0.70323352897;RREB1:0.69516820886;RBPJ:0.630892752568;LMO2:0.63022323371;T:0.602994772798;MYOD1:0.588696258791;ATF6:0.55158946569;NANOG{mouse}:0.537391098322;FOXD3:0.532114666051;TP53:0.52515536712;HMGA1,2:0.50181674522;NHLH1,2:0.500456522883;NKX2-1,4:0.496239940261;TGIF1:0.48913594415;PPARG:0.485303077237;ATF2:0.460882158714;CDC5L:0.45303700166;EBF1:0.447460404137;GFI1B:0.438574320375;MYFfamily:0.430195297604;SP1:0.415850795638;MTF1:0.406593935474;VSX1,2:0.39627490105;SOX17:0.395538197216;HNF1A:0.378433724663;NKX2-3_NKX2-5:0.37533238836;EVI1:0.354581037891;FOXP3:0.342461575822;YY1:0.334202134308;STAT2,4,6:0.331407548768;REST:0.327164345147;HMX1:0.286983647694;TLX2:0.272339137806;GZF1:0.263564831164;AIRE:0.25075011442;EP300:0.244018192042;NANOG:0.239368407283;BPTF:0.228670965356;FOXP1:0.206625139964;TFAP2B:0.190692395575;ZBTB16:0.172757899914;EGR1..3:0.157983284502;HBP1_HMGB_SSRP1_UBTF:0.152106739009;CDX1,2,4:0.1181226071;ALX4:0.108500105936;BREu{core}:0.101828821786;PAX1,9:0.0858097429529;JUN:0.0211445821895;XCPE1{core}:0.0148960233535;FOSL2:-0.005081830512;HNF4A_NR2F1,2:-0.0301648816181;GFI1:-0.0395397882293;PBX1:-0.0488409526492;LEF1_TCF7_TCF7L1,2:-0.0562116088951;SOX2:-0.0577005174313;POU6F1:-0.0588742847646;HLF:-0.0683161909823;CUX2:-0.08984917529;POU5F1:-0.176412395526;HOX{A6,A7,B6,B7}:-0.189358796017;ATF4:-0.209093347778;ARID5B:-0.221728448018;SOX{8,9,10}:-0.233065077414;DBP:-0.235350362795;PAX6:-0.258022765919;RXR{A,B,G}:-0.262104597575;RFX1:-0.291939750321;ALX1:-0.302783569257;IRF7:-0.303126073001;HIF1A:-0.304170046358;PITX1..3:-0.33150370842;ETS1,2:-0.344732836855;FOS_FOS{B,L1}_JUN{B,D}:-0.355596419246;FOXQ1:-0.407959304214;NKX2-2,8:-0.411231843733;SPI1:-0.42238104508;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422695959533;NFIX:-0.432815600562;PRRX1,2:-0.435280120343;FOX{F1,F2,J1}:-0.461434137682;ADNP_IRX_SIX_ZHX:-0.475006902528;NKX6-1,2:-0.4990160481;HES1:-0.500151165744;HSF1,2:-0.503157932754;TFDP1:-0.511189768304;ZFP161:-0.513642426102;NFE2:-0.515912900516;PAX2:-0.527554598163;EN1,2:-0.530060619225;SPIB:-0.547204276;POU3F1..4:-0.553450660743;NFE2L2:-0.555567811805;IRF1,2:-0.560393480039;RUNX1..3:-0.564944727762;BACH2:-0.590435338566;NFKB1_REL_RELA:-0.607821399683;PAX4:-0.641698259148;E2F1..5:-0.642705415499;NFY{A,B,C}:-0.671172461433;FOXN1:-0.689452066137;CEBPA,B_DDIT3:-0.759487148804;ATF5_CREB3:-0.793186001781;ZBTB6:-0.80809790431;AHR_ARNT_ARNT2:-0.828837840236;CREB1:-0.884910379145;POU2F1..3:-0.889854815077;RFX2..5_RFXANK_RFXAP:-0.906720768842;ONECUT1,2:-0.923723003402;POU1F1:-0.927223502968;SREBF1,2:-0.946853501306;DMAP1_NCOR{1,2}_SMARC:-0.947751397355;ZNF143:-0.997639698995;NFIL3:-0.999577248001;STAT1,3:-1.05247657148;bHLH_family:-1.09587830014;PDX1:-1.10440764508;NRF1:-1.11430209841;ELF1,2,4:-1.23169290126;MYB:-1.2420886172;CRX:-1.27060556326;OCT4_SOX2{dimer}:-1.30091331063;STAT5{A,B}:-1.65136653854;PAX3,7:-2.06458251531;PAX8:-2.1309293705;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.59122467763;ELK1,4_GABP{A,B1}:-2.80999645724
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10057-101H3;search_select_hide=table117:FF:10057-101H3
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:umbilical cord, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11765
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stage31 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB110269
catalog numberCat:RtHFN: Umbilical cor
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004990
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11765 CAGE DRX008755 DRR009627
Accession ID Hg19

Library idBAMCTSS
CNhs11765 DRZ001052 DRZ002437
Accession ID Hg38

Library idBAMCTSS
CNhs11765 DRZ012402 DRZ013787
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.445
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.105
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.047
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.446
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.525
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.525
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0669
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0.525
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.445
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.755
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.153
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.113
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.525
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.525
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.296
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.755
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.525
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.178
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.448
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11765

Jaspar motifP-value
MA0002.20.0679
MA0003.10.0389
MA0004.10.0225
MA0006.10.211
MA0007.10.321
MA0009.10.185
MA0014.10.705
MA0017.10.419
MA0018.20.0563
MA0019.10.657
MA0024.10.0294
MA0025.10.0496
MA0027.10.426
MA0028.11.26767e-10
MA0029.10.575
MA0030.10.895
MA0031.10.747
MA0035.20.435
MA0038.10.634
MA0039.20.233
MA0040.10.981
MA0041.10.588
MA0042.10.319
MA0043.10.00336
MA0046.10.628
MA0047.20.297
MA0048.10.0531
MA0050.10.0019
MA0051.19.59935e-4
MA0052.18.2051e-11
MA0055.10.0429
MA0057.10.418
MA0058.14.69515e-4
MA0059.10.0351
MA0060.14.52904e-4
MA0061.10.0683
MA0062.25.61428e-21
MA0065.20.289
MA0066.10.523
MA0067.10.0732
MA0068.10.785
MA0069.10.0971
MA0070.10.526
MA0071.10.146
MA0072.10.716
MA0073.10.426
MA0074.10.589
MA0076.11.85537e-14
MA0077.10.926
MA0078.10.74
MA0079.20.381
MA0080.27.14818e-7
MA0081.12.9546e-4
MA0083.18.37088e-10
MA0084.10.0558
MA0087.10.536
MA0088.10.0418
MA0090.12.17177e-4
MA0091.10.00129
MA0092.10.0886
MA0093.10.00577
MA0099.25.47245e-8
MA0100.10.154
MA0101.10.0141
MA0102.20.173
MA0103.10.202
MA0104.29.57607e-4
MA0105.10.568
MA0106.10.885
MA0107.10.0132
MA0108.23.29143e-34
MA0111.10.328
MA0112.21.42648e-4
MA0113.10.00237
MA0114.10.765
MA0115.10.129
MA0116.10.76
MA0117.10.38
MA0119.10.116
MA0122.10.189
MA0124.10.58
MA0125.10.413
MA0131.10.181
MA0135.10.908
MA0136.12.37799e-16
MA0137.20.527
MA0138.20.0075
MA0139.10.49
MA0140.10.999
MA0141.10.124
MA0142.10.0349
MA0143.10.471
MA0144.10.563
MA0145.10.0348
MA0146.10.616
MA0147.10.0038
MA0148.10.0537
MA0149.10.148
MA0150.10.00332
MA0152.10.0732
MA0153.10.348
MA0154.10.136
MA0155.10.0385
MA0156.14.5628e-16
MA0157.10.37
MA0159.10.662
MA0160.10.591
MA0162.10.0853
MA0163.10.65
MA0164.10.983
MA0258.10.00183
MA0259.10.127



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11765

Novel motifP-value
10.892
100.312
1000.842
1010.876
1020.77
1030.879
1040.787
1050.836
1060.0272
1070.00283
1080.134
1090.618
110.714
1100.606
1110.861
1120.49
1131.57509e-4
1140.544
1150.411
1160.257
1170.0537
1180.494
1190.151
120.13
1200.562
1210.655
1220.0648
1230.207
1240.742
1250.921
1260.423
1270.882
1280.0752
1290.487
130.539
1300.907
1310.211
1320.069
1330.545
1340.613
1350.194
1360.262
1370.362
1380.632
1390.139
140.974
1400.531
1410.687
1420.428
1430.501
1440.217
1450.789
1460.679
1470.0388
1480.589
1490.0251
150.372
1500.825
1510.104
1520.329
1530.425
1540.67
1550.652
1560.899
1570.399
1580.65
1590.501
160.165
1600.0498
1610.53
1620.143
1630.678
1640.82
1650.307
1660.0805
1670.108
1680.0832
1690.022
170.327
180.847
190.00947
20.0238
200.0679
210.699
220.242
230.0137
240.453
250.655
260.904
270.318
280.766
290.148
30.671
300.038
310.468
321.99363e-9
330.233
340.233
350.67
360.0772
370.993
380.609
390.089
40.814
400.553
410.337
420.713
430.625
440.324
450.131
460.244
470.847
480.882
490.428
50.672
500.816
510.586
520.139
530.782
540.425
550.551
560.996
570.461
580.68
590.175
60.307
600.222
610.767
620.275
630.516
640.483
650.115
660.0563
670.448
680.436
690.247
70.806
700.535
710.753
720.914
730.972
740.2
750.405
760.144
770.0738
780.512
790.16
80.641
800.498
810.478
820.115
830.734
840.425
850.0344
860.518
870.0211
880.485
890.0727
90.477
900.202
910.0095
920.0502
930.736
940.45
950.0301
960.192
970.78
980.515
990.216



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11765


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002331 (umbilical cord)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010057 (human umbilical cord - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0000358 (blastocyst)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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