FF:11259-116F8: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Adipocyte - subcutaneous, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12494
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	53 years old adult
sex	female
age	53
cell type	adipocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1377
catalog number	CA803sD-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004865

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12494		CAGE		DRX008101		DRR008973

Accession ID Hg19

Library id		BAM		CTSS
CNhs12494		DRZ000398		DRZ001783

Accession ID Hg38

Library id		BAM		CTSS
CNhs12494		DRZ011748		DRZ013133

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004865

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.CGATGT		sRNA-Seq		DRX037226		DRR041592

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.CGATGT		DRZ007234

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.548
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.783
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0247
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.548
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.396
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	1.314
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.403
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.548
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.172
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.257
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.548
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.666
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.454
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.548
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.934
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.548
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12494

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.104
MA0003.1	MA0003.1	0.0763
MA0004.1	MA0004.1	0.904
MA0006.1	MA0006.1	0.473
MA0007.1	MA0007.1	0.0904
MA0009.1	MA0009.1	0.52
MA0014.1	MA0014.1	0.844
MA0017.1	MA0017.1	0.0589
MA0018.2	MA0018.2	5.57547e-4
MA0019.1	MA0019.1	0.884
MA0024.1	MA0024.1	0.00132
MA0025.1	MA0025.1	0.121
MA0027.1	MA0027.1	0.574
MA0028.1	MA0028.1	0.0132
MA0029.1	MA0029.1	0.547
MA0030.1	MA0030.1	0.0867
MA0031.1	MA0031.1	0.118
MA0035.2	MA0035.2	0.929
MA0038.1	MA0038.1	0.853
MA0039.2	MA0039.2	0.529
MA0040.1	MA0040.1	0.911
MA0041.1	MA0041.1	0.309
MA0042.1	MA0042.1	0.574
MA0043.1	MA0043.1	0.00391
MA0046.1	MA0046.1	0.45
MA0047.2	MA0047.2	0.774
MA0048.1	MA0048.1	0.984
MA0050.1	MA0050.1	8.16403e-5
MA0051.1	MA0051.1	0.00411
MA0052.1	MA0052.1	0.227
MA0055.1	MA0055.1	0.559
MA0057.1	MA0057.1	0.142
MA0058.1	MA0058.1	0.99
MA0059.1	MA0059.1	0.146
MA0060.1	MA0060.1	0.114
MA0061.1	MA0061.1	0.503
MA0062.2	MA0062.2	4.032e-6
MA0065.2	MA0065.2	4.39726e-4
MA0066.1	MA0066.1	0.0334
MA0067.1	MA0067.1	0.0847
MA0068.1	MA0068.1	0.425
MA0069.1	MA0069.1	0.0873
MA0070.1	MA0070.1	0.756
MA0071.1	MA0071.1	0.0919
MA0072.1	MA0072.1	0.0689
MA0073.1	MA0073.1	0.889
MA0074.1	MA0074.1	0.395
MA0076.1	MA0076.1	4.96297e-4
MA0077.1	MA0077.1	0.643
MA0078.1	MA0078.1	0.405
MA0079.2	MA0079.2	0.589
MA0080.2	MA0080.2	4.7612e-5
MA0081.1	MA0081.1	0.0415
MA0083.1	MA0083.1	0.00162
MA0084.1	MA0084.1	0.266
MA0087.1	MA0087.1	0.624
MA0088.1	MA0088.1	0.358
MA0090.1	MA0090.1	0.0684
MA0091.1	MA0091.1	0.00545
MA0092.1	MA0092.1	0.0282
MA0093.1	MA0093.1	0.962
MA0099.2	MA0099.2	0.857
MA0100.1	MA0100.1	0.665
MA0101.1	MA0101.1	0.518
MA0102.2	MA0102.2	0.0593
MA0103.1	MA0103.1	0.74
MA0104.2	MA0104.2	0.956
MA0105.1	MA0105.1	0.092
MA0106.1	MA0106.1	0.239
MA0107.1	MA0107.1	0.631
MA0108.2	MA0108.2	7.36763e-4
MA0111.1	MA0111.1	0.908
MA0112.2	MA0112.2	9.93034e-6
MA0113.1	MA0113.1	0.089
MA0114.1	MA0114.1	0.0178
MA0115.1	MA0115.1	0.812
MA0116.1	MA0116.1	0.0333
MA0117.1	MA0117.1	0.803
MA0119.1	MA0119.1	0.0311
MA0122.1	MA0122.1	0.851
MA0124.1	MA0124.1	0.963
MA0125.1	MA0125.1	0.35
MA0131.1	MA0131.1	0.15
MA0135.1	MA0135.1	0.987
MA0136.1	MA0136.1	2.87092e-10
MA0137.2	MA0137.2	0.532
MA0138.2	MA0138.2	0.0037
MA0139.1	MA0139.1	0.672
MA0140.1	MA0140.1	0.649
MA0141.1	MA0141.1	0.0206
MA0142.1	MA0142.1	0.875
MA0143.1	MA0143.1	0.969
MA0144.1	MA0144.1	0.252
MA0145.1	MA0145.1	0.105
MA0146.1	MA0146.1	0.142
MA0147.1	MA0147.1	0.83
MA0148.1	MA0148.1	0.165
MA0149.1	MA0149.1	0.2
MA0150.1	MA0150.1	0.655
MA0152.1	MA0152.1	0.915
MA0153.1	MA0153.1	0.375
MA0154.1	MA0154.1	0.0441
MA0155.1	MA0155.1	0.112
MA0156.1	MA0156.1	5.39872e-6
MA0157.1	MA0157.1	0.359
MA0159.1	MA0159.1	0.106
MA0160.1	MA0160.1	0.0968
MA0162.1	MA0162.1	0.0479
MA0163.1	MA0163.1	0.00254
MA0164.1	MA0164.1	0.947
MA0258.1	MA0258.1	5.98958e-4
MA0259.1	MA0259.1	0.94

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12494

Novel motif	Logo	P-value
1	1	0.113
10	10	0.341
100	100	0.735
101	101	0.859
102	102	0.599
103	103	0.156
104	104	0.256
105	105	0.438
106	106	0.0409
107	107	0.207
108	108	0.268
109	109	0.199
11	11	0.0413
110	110	0.147
111	111	0.0714
112	112	0.355
113	113	0.613
114	114	0.233
115	115	0.00545
116	116	0.188
117	117	0.761
118	118	0.48
119	119	0.0484
12	12	0.814
120	120	0.866
121	121	0.595
122	122	0.745
123	123	0.712
124	124	0.183
125	125	0.198
126	126	0.629
127	127	0.202
128	128	0.0822
129	129	0.0846
13	13	0.394
130	130	0.986
131	131	0.391
132	132	0.737
133	133	0.303
134	134	0.842
135	135	0.318
136	136	0.978
137	137	0.445
138	138	0.947
139	139	0.242
14	14	0.968
140	140	0.502
141	141	0.527
142	142	0.68
143	143	0.0576
144	144	0.839
145	145	0.671
146	146	0.546
147	147	0.399
148	148	0.0788
149	149	0.0169
15	15	0.191
150	150	0.376
151	151	0.521
152	152	0.26
153	153	0.702
154	154	0.952
155	155	0.922
156	156	0.731
157	157	0.33
158	158	0.541
159	159	0.648
16	16	0.113
160	160	0.0153
161	161	0.262
162	162	0.198
163	163	0.401
164	164	0.367
165	165	0.497
166	166	0.435
167	167	0.897
168	168	0.209
169	169	0.00965
17	17	0.17
18	18	0.152
19	19	0.0267
2	2	0.289
20	20	0.658
21	21	0.245
22	22	0.18
23	23	0.13
24	24	0.397
25	25	0.762
26	26	0.163
27	27	0.114
28	28	0.43
29	29	0.498
3	3	0.385
30	30	0.668
31	31	0.311
32	32	6.30794e-7
33	33	0.574
34	34	0.556
35	35	0.386
36	36	0.467
37	37	0.236
38	38	0.559
39	39	0.295
4	4	0.383
40	40	0.121
41	41	0.216
42	42	0.974
43	43	0.129
44	44	0.219
45	45	0.488
46	46	0.0594
47	47	0.237
48	48	0.267
49	49	0.132
5	5	0.175
50	50	0.934
51	51	0.334
52	52	0.301
53	53	0.892
54	54	0.521
55	55	0.378
56	56	0.727
57	57	0.25
58	58	0.409
59	59	0.0748
6	6	0.228
60	60	0.227
61	61	0.722
62	62	0.276
63	63	0.16
64	64	0.238
65	65	0.0823
66	66	0.93
67	67	0.297
68	68	0.0579
69	69	0.162
7	7	0.543
70	70	0.0299
71	71	0.0453
72	72	0.988
73	73	0.173
74	74	0.858
75	75	0.461
76	76	0.698
77	77	0.0324
78	78	0.25
79	79	0.197
8	8	0.0567
80	80	0.645
81	81	0.273
82	82	0.0558
83	83	0.315
84	84	0.23
85	85	0.0252
86	86	0.776
87	87	0.255
88	88	0.675
89	89	0.0236
9	9	0.308
90	90	0.639
91	91	0.214
92	92	0.14
93	93	0.3
94	94	0.155
95	95	0.522
96	96	0.348
97	97	0.612
98	98	0.225
99	99	0.12

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12494

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000011 human subcutaneous adipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004865
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004865
+|accession_numbers=CAGE;DRX008101;DRR008973;DRZ000398;DRZ001783;DRZ011748;DRZ013133
+|accession_numbers_RNASeq=sRNA-Seq;DRX037226;DRR041592;DRZ007234
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:33793430..33793447,-!p1@CEBPA!2.21!638.32!CEBPA;;chr11:47279504..47279563,+!p1@NR1H3!2.14!298.89!NR1H3;;chr7:73038839..73038862,-!p1@MLXIPL!1.62!40.53!MLXIPL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.62!40.53!ZBED1;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.59!KLF15;;chr17:46675420..46675465,-!p3@HOXB6!1.53!37.99!HOXB6;;chr7:19157248..19157268,-!p1@TWIST1!1.44!70.92!TWIST1;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.40!PPARG;;chr2:239756671..239756732,+!p1@TWIST2!1.40!75.99!TWIST2;;chr4:174451370..174451387,-!p1@HAND2!1.38!22.80!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.34!35.46!TWIST2;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.26!HOXB8;;chr11:46299199..46299233,+!p1@CREB3L1!1.29!93.72!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.27!17.73!HOXC5;;chr3:126076264..126076305,-!p2@KLF15!1.24!22.80!KLF15;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!22.80!ZBTB16;;chr11:47279568..47279577,+!p8@NR1H3!1.21!15.20!NR1H3;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.20!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!1.21!15.20!HOXB6;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.66!IRF8;;chr10:71333172..71333186,-!p1@NEUROG3!1.14!12.66!NEUROG3;;chr12:54393880..54393962,+!p1@HOXC9!1.14!12.66!HOXC9;;chr5:76382989..76383001,-!p4@ZBED3!1.14!12.66!ZBED3;;chr7:73038867..73038878,-!p2@MLXIPL!1.14!12.66!MLXIPL;;chr3:12392991..12393030,+!p7@PPARG!1.14!12.66!PPARG;;chr3:12329397..12329433,+!p2@PPARG!1.12!27.86!PPARG;;chr13:41240717..41240735,-!p2@FOXO1!1.10!78.52!FOXO1;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.86!TWIST1;;chr17:17726907..17726958,-!p2@SREBF1!1.06!65.86!SREBF1;;chr15:90294062..90294079,-!p2@MESP1!1.05!10.13!MESP1;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.13!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!1.05!10.13!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.13!HOXA9;;chr22:39916888..39916894,+!p12@ATF4!1.05!10.13!ATF4;;chr2:119605214..119605230,-!p1@EN1!1.05!10.13!EN1;;chr3:12392932..12392962,+!p8@PPARG!1.05!10.13!PPARG;;chr12:54378923..54378966,+!p1@HOXC10!1.05!10.13!HOXC10;;chr12:54779511..54779577,-!p5@ZNF385A!1.05!10.13!ZNF385A;;chr19:46801639..46801699,+!p1@HIF3A!1.05!10.13!HIF3A;;chr1:119530493..119530572,-!p1@TBX15!1.05!10.13!TBX15;;chr15:42749722..42749739,-!p2@ZFP106!1.03!17.73!ZFP106;;chr8:99956662..99956684,+!p1@OSR2!1.03!15.20!OSR2;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.33!HIC1;;chrX:106960180..106960197,-!p2@TSC22D3!1.00!35.46!TSC22D3;;chr19:50435736..50435781,+!p3@ATF5!1.00!12.66!ATF5;;chr19:50432453..50432468,+!p1@ATF5!0.98!486.34!ATF5;;chr16:54964740..54964789,+!p1@IRX5!0.98!12.66!IRX5;;chr5:92918919..92918942,+!p1@NR2F1!0.97!37.99!NR2F1;;chr2:145282041..145282092,-!p8@ZEB2!0.97!12.66!ZEB2;;chr5:92919100..92919135,+!p3@NR2F1!0.97!10.13!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.95!20.26!PPARG;;chr17:46622070..46622109,-!p1@HOXB2!0.94!17.73!HOXB2;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!210.24!TSC22D3;;chr17:40440481..40440550,+!p1@STAT5A!0.93!55.73!STAT5A;;chr16:31076332..31076388,-!p3@ZNF668!0.93!7.60!ZNF668;;chr17:40440359..40440386,+!p4@STAT5A!0.93!7.60!STAT5A;;chr9:132427883..132427951,+!p2@PRRX2!0.93!7.60!PRRX2;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.60!HAND2;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.60!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!0.93!7.60!IRX2;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.60!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.93!7.60!HOXC10;;chrX:107018969..107019024,-!p6@TSC22D3!0.91!10.13!TSC22D3;;chr13:41240737..41240787,-!p1@FOXO1!0.90!86.12!FOXO1;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.60!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.73!HOXB2;;chr1:23885981..23886002,-!p1@ID3!0.83!1071.46!ID3;;chr20:39317868..39317884,-!p1@MAFB!0.83!73.46!MAFB;;chr2:46612334..46612349,+!p6@EPAS1!0.82!7.60!EPAS1;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.52!NR2F6;;chr9:102584262..102584276,+!p1@NR4A3!0.80!12.66!NR4A3;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.60!HOXB7;;chr3:42947600..42947680,+!p1@ZNF662!0.79!7.60!ZNF662;;chr8:72756267..72756296,-!p4@MSC!0.78!7.60!MSC;;chr7:27195867..27195893,-!p3@HOXA7!0.78!5.07!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.78!5.07!HOXA9;;chr7:73038889..73038905,-!p3@MLXIPL!0.78!5.07!MLXIPL;;chr8:93074803..93074845,-!p1@RUNX1T1!0.78!5.07!RUNX1T1;;chr9:1050331..1050363,+!p1@DMRT2!0.78!5.07!DMRT2;;chr16:54319010..54319041,-!p8@IRX3!0.78!5.07!IRX3;;chr17:46132044..46132080,+!p4@NFE2L1!0.78!5.07!NFE2L1;;chr17:46682321..46682362,-!p1@HOXB6!0.78!5.07!HOXB6;;chr19:33864740..33864747,+!p4@CEBPG!0.78!5.07!CEBPG;;chr1:119530636..119530653,-!p2@TBX15!0.78!5.07!TBX15;;chr2:145277792..145277808,-!p15@ZEB2!0.78!5.07!ZEB2;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.07!HOXD8;;chr3:21792631..21792665,-!p3@ZNF385D!0.78!5.07!ZNF385D;;chr4:174451350..174451363,-!p3@HAND2!0.78!5.07!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.78!5.07!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.78!5.07!EMX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.78!5.07!CREB3L1;;chr12:54422245..54422263,+!p7@HOXC6!0.78!5.07!HOXC6;;chr5:158526917..158526932,-!p1@EBF1!0.76!12.66!EBF1;;chr14:64970427..64970457,+!p3@ZBTB1!0.76!10.13!ZBTB1;;chr8:72756667..72756736,-!p2@MSC!0.75!7.60!MSC;;chr17:3571863..3571881,-!p1@TAX1BP3!0.74!359.69!TAX1BP3;;chr12:48298765..48298783,-!p2@VDR!0.74!10.13!VDR;;chr12:80085061..80085119,-!p6@PAWR!0.74!7.60!PAWR;;chr16:31454084..31454115,-!p1@ZNF843!0.74!5.07!ZNF843;;chr14:61116168..61116180,-!p2@SIX1!0.73!5.07!SIX1;;chr8:72756637..72756664,-!p3@MSC!0.73!5.07!MSC;;chr1:170632285..170632309,+!p1@PRRX1!0.73!5.07!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.40!SNAI2;;chr5:92920456..92920488,+!p9@NR2F1!0.72!5.07!NR2F1;;chr10:31607702..31607755,+!p3@ZEB1!0.72!5.07!ZEB1;;chrX:107019163..107019179,-!p7@TSC22D3!0.72!5.07!TSC22D3;;chr17:38498510..38498540,+!p7@RARA!0.71!5.07!RARA;;chr12:53856262..53856278,+!p12@PCBP2!0.70!5.07!PCBP2;;chr17:1958388..1958404,+!p1@HIC1!0.69!27.86!HIC1;;chr5:72744594..72744609,-!p1@FOXD1!0.69!20.26!FOXD1;;chr5:72744562..72744573,-!p3@FOXD1!0.69!5.07!FOXD1;;chr3:129158696..129158703,-!p4@MBD4!0.69!5.07!MBD4;;chr8:72756213..72756243,-!p5@MSC!0.68!5.07!MSC;;chr14:21566731..21566836,-!p1@ZNF219!0.67!45.59!ZNF219;;chr20:48807456..48807475,+!p3@CEBPB!0.67!7.60!CEBPB;;chr19:33865009..33865090,+!p3@CEBPG!0.67!5.07!CEBPG;;chr2:85197924..85197955,+!p3@KCMF1!0.66!15.20!KCMF1;;chr12:26277817..26277863,-!p2@BHLHE41!0.66!5.07!BHLHE41;;chr8:49833978..49833996,-!p1@SNAI2!0.65!83.59!SNAI2;;chr19:56111680..56111716,+!p1@ZNF524!0.65!15.20!ZNF524;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.26!HIF1A;;chr1:8939265..8939367,-!p5@ENO1!0.64!7.60!ENO1;;chr8:72756063..72756125,-!p1@MSC!0.64!7.60!MSC;;chr2:74375081..74375092,-!p2@BOLA3!0.64!7.60!BOLA3;;chr19:12203100..12203132,+!p1@ZNF788!0.64!7.60!ZNF788;;chr14:62213827..62213853,+!p6@HIF1A!0.64!5.07!HIF1A;;chr4:103422076..103422117,+!p5@NFKB1!0.64!5.07!NFKB1;;chr4:146436110..146436135,+!p6@SMAD1!0.64!5.07!SMAD1;;chrX:106960221..106960236,-!p3@TSC22D3!0.63!10.13!TSC22D3;;chrX:66763856..66763896,+!p1@AR!0.63!5.07!AR;;chr20:48807648..48807671,+!p9@CEBPB!0.63!5.07!CEBPB;;chr9:73028332..73028385,-!p3@KLF9!0.62!12.66!KLF9;;chr16:54320675..54320715,-!p1@IRX3!0.62!7.60!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.60!SMARCD3;;chr20:48807143..48807165,+!p11@CEBPB!0.62!5.07!CEBPB;;chr20:48807430..48807439,+!p8@CEBPB!0.62!5.07!CEBPB;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.46!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.61!15.20!DRAP1;;chr13:45151403..45151433,-!p5@TSC22D1!0.61!7.60!TSC22D1;;chr2:121493425..121493474,+!p1@GLI2!0.61!7.60!GLI2;;chr18:32957260..32957309,-!p1@ZNF396!0.61!7.60!ZNF396;;chr12:57914286..57914304,-!p1@DDIT3!0.60!131.72!DDIT3;;chr21:47063625..47063658,+!p1@PCBP3!0.60!15.20!PCBP3;;chr2:239148671..239148686,-!p1@HES6!0.60!12.66!HES6;;chr17:42298339..42298361,-!p5@UBTF!0.60!7.60!UBTF;;chr17:20492136..20492165,+!p1@MEIS3P2!0.60!5.07!MEIS3P2;;chr19:58987711..58987729,+!p2@ZNF446!0.60!5.07!ZNF446;;chr1:204042275..204042286,+!p4@SOX13!0.60!5.07!SOX13;;chr10:51572408..51572454,+!p3@NCOA4!0.59!20.26!NCOA4;;chr12:10875658..10875708,-!p2@CSDA!0.59!7.60!CSDA;;chr20:48807351..48807384,+!p1@CEBPB!0.58!359.69!CEBPB;;chr14:61116183..61116208,-!p1@SIX1!0.58!12.66!SIX1;;chr14:64971288..64971316,-!p2@ZBTB25!0.58!10.13!ZBTB25;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.13!TBX2;;chr14:24837368..24837401,+!p1@NFATC4!0.58!7.60!NFATC4;;chr11:113930291..113930339,+!p2@ZBTB16!0.58!5.07!ZBTB16;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.58!5.07!PCBP2;;chr2:74730430..74730451,-!p1@LBX2!0.58!5.07!LBX2;;chr19:36980756..36980795,-!p3@ZNF566!0.58!5.07!ZNF566;;chr19:36545128..36545203,-!p1@THAP8!0.57!15.20!THAP8;;chr8:145159447..145159458,+!p4@MAF1!0.57!7.60!MAF1;;chr5:72744445..72744466,-!p2@FOXD1!0.57!5.07!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!0.57!5.07!CREB3L1;;chr20:48807615..48807644,+!p6@CEBPB!0.57!5.07!CEBPB;;chr14:75894714..75894733,+!p1@JDP2!0.56!93.72!JDP2;;chr9:35732647..35732678,+!p2@CREB3!0.56!17.73!CREB3;;chr19:17356436..17356481,-!p3@NR2F6!0.56!5.07!NR2F6;;chr11:67007445..67007459,+!p4@KDM2A!0.56!5.07!KDM2A;;chr2:145277882..145277967,-!p3@ZEB2!0.56!5.07!ZEB2;;chr20:48599506..48599526,+!p1@SNAI1!0.55!20.26!SNAI1;;chr5:92918894..92918912,+!p2@NR2F1!0.55!10.13!NR2F1;;chr2:185463247..185463263,+!p1@ZNF804A!0.55!5.07!ZNF804A;;chr3:141820622..141820635,-!p5@TFDP2!0.55!5.07!TFDP2;;chr14:64970427..64970450,-!p5@ZBTB25!0.55!5.07!ZBTB25;;chr16:29817399..29817425,+!p13@MAZ!0.55!5.07!MAZ;;chr14:75746705..75746720,+!p8@FOS!0.55!2.53!FOS;;chr14:95236551..95236576,-!p2@GSC!0.55!2.53!GSC;;chr15:31684663..31684717,+!p10@KLF13!0.55!2.53!KLF13;;chr15:37391614..37391626,-!p18@MEIS2!0.55!2.53!MEIS2;;chr15:83953373..83953386,-!p2@BNC1!0.55!2.53!BNC1;;chr15:96880438..96880445,+!p23@NR2F2!0.55!2.53!NR2F2;;chr16:4323246..4323299,-!p5@TFAP4!0.55!2.53!TFAP4;;chr16:54320322..54320343,-!p7@IRX3!0.55!2.53!IRX3;;chr17:17740823..17740833,-!p8@SREBF1!0.55!2.53!SREBF1;;chr17:38256590..38256599,-!p8@NR1D1!0.55!2.53!NR1D1;;chr17:40428334..40428345,-!p2@ST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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002521;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor1.CNhs12494.11259-116F8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11259-116F8
 |is_a=EFO:0002091;;FF:0000011
 |is_obsolete=
+|library_id=CNhs12494
+|library_id_phase_based=2:CNhs12494
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11259
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGATGT.11259
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11259
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGATGT.11259
 |name=Adipocyte - subcutaneous, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12494,LSID916,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=116
 |rna_catalog_number=CA803sD-R10a
@@ Line 60: / Line 82: @@
 |rna_tube_id=116F8
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.CGATGT
 |sample_age=53
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11259-116F8;search_select_hide=table117:FF:11259-116F8
 }}

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FF:11259-116F8: Difference between revisions

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Latest revision as of 16:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0