FF:11275-116H6: Difference between revisions

Latest revision as of 16:30, 3 June 2020

Name:	Neural stem cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11063
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	19 weeks old fetus
sex	unknown
age	embryo 19week
cell type	neural stem cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2457
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005090

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11063		CAGE		DRX008373		DRR009245

Accession ID Hg19

Library id		BAM		CTSS
CNhs11063		DRZ000670		DRZ002055

Accession ID Hg38

Library id		BAM		CTSS
CNhs11063		DRZ012020		DRZ013405

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005090

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10011.ATGTCA		sRNA-Seq		DRX037175		DRR041541

Accession ID Hg19

Library id		BAM		CTSS
SRhi10011.ATGTCA		DRZ007183

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0983
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0815
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.364
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0968
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.293
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.305
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.288
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.146
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.0983
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0983
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0983
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11063

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.49285e-4
MA0003.1	MA0003.1	0.162
MA0004.1	MA0004.1	0.21
MA0006.1	MA0006.1	0.918
MA0007.1	MA0007.1	0.171
MA0009.1	MA0009.1	0.0487
MA0014.1	MA0014.1	0.309
MA0017.1	MA0017.1	0.00418
MA0018.2	MA0018.2	0.724
MA0019.1	MA0019.1	0.65
MA0024.1	MA0024.1	0.00234
MA0025.1	MA0025.1	0.764
MA0027.1	MA0027.1	0.432
MA0028.1	MA0028.1	0.68
MA0029.1	MA0029.1	0.0641
MA0030.1	MA0030.1	0.615
MA0031.1	MA0031.1	0.0913
MA0035.2	MA0035.2	0.0218
MA0038.1	MA0038.1	3.63756e-4
MA0039.2	MA0039.2	0.0349
MA0040.1	MA0040.1	0.554
MA0041.1	MA0041.1	0.352
MA0042.1	MA0042.1	0.646
MA0043.1	MA0043.1	0.561
MA0046.1	MA0046.1	0.427
MA0047.2	MA0047.2	0.00467
MA0048.1	MA0048.1	0.457
MA0050.1	MA0050.1	1.02795e-4
MA0051.1	MA0051.1	0.051
MA0052.1	MA0052.1	0.523
MA0055.1	MA0055.1	0.00265
MA0057.1	MA0057.1	0.407
MA0058.1	MA0058.1	0.143
MA0059.1	MA0059.1	0.0435
MA0060.1	MA0060.1	7.23315e-4
MA0061.1	MA0061.1	0.0184
MA0062.2	MA0062.2	0.0985
MA0065.2	MA0065.2	0.00159
MA0066.1	MA0066.1	0.0925
MA0067.1	MA0067.1	0.57
MA0068.1	MA0068.1	0.0155
MA0069.1	MA0069.1	0.893
MA0070.1	MA0070.1	0.122
MA0071.1	MA0071.1	0.035
MA0072.1	MA0072.1	0.411
MA0073.1	MA0073.1	0.741
MA0074.1	MA0074.1	0.297
MA0076.1	MA0076.1	0.997
MA0077.1	MA0077.1	0.24
MA0078.1	MA0078.1	0.39
MA0079.2	MA0079.2	0.996
MA0080.2	MA0080.2	4.36396e-10
MA0081.1	MA0081.1	0.124
MA0083.1	MA0083.1	0.224
MA0084.1	MA0084.1	0.876
MA0087.1	MA0087.1	0.596
MA0088.1	MA0088.1	0.129
MA0090.1	MA0090.1	0.133
MA0091.1	MA0091.1	0.178
MA0092.1	MA0092.1	0.631
MA0093.1	MA0093.1	0.254
MA0099.2	MA0099.2	3.97624e-5
MA0100.1	MA0100.1	0.382
MA0101.1	MA0101.1	0.0195
MA0102.2	MA0102.2	0.044
MA0103.1	MA0103.1	0.00589
MA0104.2	MA0104.2	0.264
MA0105.1	MA0105.1	0.00481
MA0106.1	MA0106.1	0.234
MA0107.1	MA0107.1	0.0164
MA0108.2	MA0108.2	0.278
MA0111.1	MA0111.1	0.628
MA0112.2	MA0112.2	2.44986e-4
MA0113.1	MA0113.1	0.0634
MA0114.1	MA0114.1	0.02
MA0115.1	MA0115.1	0.673
MA0116.1	MA0116.1	0.00575
MA0117.1	MA0117.1	0.844
MA0119.1	MA0119.1	0.0819
MA0122.1	MA0122.1	0.961
MA0124.1	MA0124.1	0.651
MA0125.1	MA0125.1	0.00303
MA0131.1	MA0131.1	0.833
MA0135.1	MA0135.1	0.0103
MA0136.1	MA0136.1	2.19763e-7
MA0137.2	MA0137.2	0.805
MA0138.2	MA0138.2	0.464
MA0139.1	MA0139.1	0.411
MA0140.1	MA0140.1	0.0066
MA0141.1	MA0141.1	0.00415
MA0142.1	MA0142.1	3.78465e-4
MA0143.1	MA0143.1	0.00352
MA0144.1	MA0144.1	0.247
MA0145.1	MA0145.1	0.397
MA0146.1	MA0146.1	0.0197
MA0147.1	MA0147.1	0.179
MA0148.1	MA0148.1	0.0344
MA0149.1	MA0149.1	0.00601
MA0150.1	MA0150.1	5.45638e-4
MA0152.1	MA0152.1	0.47
MA0153.1	MA0153.1	0.769
MA0154.1	MA0154.1	0.0272
MA0155.1	MA0155.1	0.631
MA0156.1	MA0156.1	9.76896e-5
MA0157.1	MA0157.1	0.0345
MA0159.1	MA0159.1	0.00848
MA0160.1	MA0160.1	0.0126
MA0162.1	MA0162.1	0.144
MA0163.1	MA0163.1	3.72898e-4
MA0164.1	MA0164.1	0.631
MA0258.1	MA0258.1	0.0101
MA0259.1	MA0259.1	0.525

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11063

Novel motif	Logo	P-value
1	1	0.0429
10	10	0.0934
100	100	0.36
101	101	0.734
102	102	0.73
103	103	0.227
104	104	0.133
105	105	0.565
106	106	0.129
107	107	0.693
108	108	0.591
109	109	0.00328
11	11	0.0151
110	110	0.0823
111	111	0.0477
112	112	0.0984
113	113	0.82
114	114	0.00799
115	115	0.749
116	116	0.356
117	117	0.0185
118	118	0.0934
119	119	0.0875
12	12	0.892
120	120	0.961
121	121	0.557
122	122	0.653
123	123	0.247
124	124	0.196
125	125	0.895
126	126	0.113
127	127	0.068
128	128	0.708
129	129	0.417
13	13	0.0182
130	130	0.467
131	131	0.727
132	132	0.742
133	133	0.251
134	134	0.693
135	135	0.791
136	136	0.106
137	137	0.535
138	138	0.396
139	139	0.0176
14	14	0.794
140	140	0.143
141	141	0.661
142	142	0.501
143	143	0.0266
144	144	0.777
145	145	0.865
146	146	0.665
147	147	0.865
148	148	0.269
149	149	0.309
15	15	0.063
150	150	0.321
151	151	0.503
152	152	0.075
153	153	0.951
154	154	0.64
155	155	0.0918
156	156	0.159
157	157	0.706
158	158	0.639
159	159	0.326
16	16	0.0786
160	160	0.086
161	161	0.0764
162	162	0.709
163	163	0.88
164	164	0.00592
165	165	0.615
166	166	0.922
167	167	0.397
168	168	0.599
169	169	0.0133
17	17	0.073
18	18	0.36
19	19	0.29
2	2	0.812
20	20	0.264
21	21	0.125
22	22	0.245
23	23	0.298
24	24	0.611
25	25	0.539
26	26	0.018
27	27	0.64
28	28	0.878
29	29	0.0367
3	3	0.04
30	30	0.813
31	31	0.935
32	32	0.0237
33	33	0.286
34	34	0.693
35	35	0.764
36	36	0.0843
37	37	0.0342
38	38	0.117
39	39	0.549
4	4	0.968
40	40	0.0282
41	41	0.601
42	42	0.181
43	43	0.162
44	44	0.0819
45	45	0.867
46	46	0.102
47	47	0.042
48	48	0.067
49	49	0.122
5	5	0.257
50	50	0.581
51	51	0.497
52	52	0.732
53	53	0.721
54	54	0.379
55	55	0.409
56	56	0.411
57	57	0.289
58	58	0.148
59	59	0.111
6	6	0.558
60	60	0.135
61	61	0.0339
62	62	0.11
63	63	0.166
64	64	0.185
65	65	0.0949
66	66	0.972
67	67	0.561
68	68	0.5
69	69	0.554
7	7	0.27
70	70	0.0204
71	71	0.0358
72	72	0.494
73	73	0.0223
74	74	0.231
75	75	0.0235
76	76	0.236
77	77	0.064
78	78	0.0449
79	79	0.347
8	8	0.102
80	80	0.915
81	81	0.479
82	82	0.263
83	83	0.743
84	84	0.642
85	85	0.0926
86	86	0.402
87	87	0.0644
88	88	0.933
89	89	0.562
9	9	0.568
90	90	0.599
91	91	0.978
92	92	0.139
93	93	0.299
94	94	0.0825
95	95	0.0115
96	96	0.922
97	97	0.801
98	98	0.0948
99	99	0.911

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11063

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000120 human neural stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005090
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005090
+|accession_numbers=CAGE;DRX008373;DRR009245;DRZ000670;DRZ002055;DRZ012020;DRZ013405
+|accession_numbers_RNASeq=sRNA-Seq;DRX037175;DRR041541;DRZ007183
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:57511609..57511651,+!p2@TCF12!2.44!446.95!TCF12;;chr4:57547454..57547469,-!p1@HOPX!2.42!264.26!HOPX;;chr1:23696348..23696363,-!p4@ZNF436!2.40!282.81!ZNF436;;chr14:29234581..29234601,+!p2@FOXG1!2.36!229.19!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!2.34!216.23!SOX2;;chrX:25034067..25034088,-!p1@ARX!2.23!168.72!ARX;;chr9:126774018..126774055,+!p1@LHX2!2.19!153.73!LHX2;;chr14:29235961..29236008,+!p1@FOXG1!2.18!150.42!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!135.94!POU3F3;;chr16:51185172..51185197,-!p1@SALL1!2.08!117.90!SALL1;;chr14:29236269..29236285,+!p3@FOXG1!2.02!103.16!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!2.01!101.13!SOX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.96!90.71!TSC22D4;;chr11:31832658..31832681,-!p1@PAX6!1.91!80.55!PAX6;;chr1:23696308..23696339,-!p2@ZNF436!1.89!158.05!ZNF436;;chr2:63277948..63277974,+!p1@OTX1!1.86!71.15!OTX1;;chr14:33403881..33403924,+!p1@NPAS3!1.78!59.71!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.78!58.70!ZMAT4;;chr7:14028743..14028799,-!p3@ETV1!1.73!66.06!ETV1;;chr9:126774058..126774081,+!p3@LHX2!1.68!47.01!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.68!46.50!LHX2;;chr4:57547751..57547764,-!p6@HOPX!1.67!45.48!HOPX;;chr17:70117153..70117174,+!p1@SOX9!1.66!434.50!SOX9;;chr3:147127142..147127168,+!p1@ZIC1!1.64!42.94!ZIC1;;chr12:103351444..103351461,+!p1@ASCL1!1.63!41.67!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.61!232.50!ID4;;chr20:20348740..20348757,+!p1@INSM1!1.60!39.13!INSM1;;chr13:95364784..95364806,-!p1@SOX21!1.58!37.10!SOX21;;chr12:106976774..106976788,+!p1@RFX4!1.57!35.83!RFX4;;chr14:29236301..29236317,+!p5@FOXG1!1.56!35.32!FOXG1;;chr1:42384532..42384603,-!p2@HIVEP3!1.56!35.32!HIVEP3;;chrX:82763292..82763317,+!p1@POU3F4!1.55!34.30!POU3F4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.54!34.05!POU3F3;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.52!OLIG1;;chr13:72441315..72441454,-!p1@DACH1!1.52!63.52!DACH1;;chr1:151032922..151032951,+!p2@MLLT11!1.51!51.84!MLLT11;;chr1:50889103..50889145,-!p1@DMRTA2!1.49!30.24!DMRTA2;;chr16:51185318..51185348,-!p2@SALL1!1.48!28.97!SALL1;;chr2:63277978..63277995,+!p2@OTX1!1.47!28.46!OTX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!27.95!ZIC2;;chr18:53068911..53068935,-!p4@TCF4!1.45!30.75!TCF4;;chr21:34398234..34398250,+!p1@OLIG2!1.43!25.92!OLIG2;;chr1:214161272..214161322,+!p1@PROX1!1.41!34.56!PROX1;;chr10:119302232..119302265,+!p1@EMX2!1.41!24.90!EMX2;;chr12:106976837..106976850,+!p5@RFX4!1.41!24.65!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.41!24.65!ZIC1;;chr7:14028488..14028516,-!p2@ETV1!1.39!25.66!ETV1;;chr7:96654133..96654150,-!p1@DLX5!1.39!23.63!DLX5;;chr1:2461692..2461710,-!p1@HES5!1.38!22.87!HES5;;chr7:42276787..42276815,-!p1@GLI3!1.35!55.65!GLI3;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.47!NFIX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr1:2985760..2985774,+!p1@PRDM16!1.33!20.58!PRDM16;;chr9:126774091..126774098,+!p4@LHX2!1.33!20.58!LHX2;;chr12:24102576..24102623,-!p2@SOX5!1.33!20.33!SOX5;;chr11:31832862..31832884,-!p2@PAX6!1.32!19.82!PAX6;;chr13:72441074..72441172,-!p2@DACH1!1.32!19.82!DACH1;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.81!ZFP106;;chr15:80696703..80696754,+!p1@ARNT2!1.31!25.66!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.31!ZIC5;;chr7:14029283..14029311,-!p1@ETV1!1.29!96.30!ETV1;;chr2:172949484..172949522,+!p1@DLX1!1.29!18.55!DLX1;;chr12:103352277..103352324,+!p2@ASCL1!1.29!18.29!ASCL1;;chr9:14314131..14314147,-!p2@NFIB!1.28!98.08!NFIB;;chr11:31832610..31832639,-!p5@PAX6!1.28!18.04!PAX6;;chr14:29237009..29237049,+!p4@FOXG1!1.28!18.04!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.53!RFX4;;chr6:99282592..99282616,+!p3@POU3F2!1.27!17.53!POU3F2;;chr8:60031682..60031710,-!p2@TOX!1.25!26.93!TOX;;chr21:34442540..34442560,+!p2@OLIG1!1.24!16.26!OLIG1;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.24!16.26!POU3F3;;chr2:172967621..172967637,-!p1@DLX2!1.23!42.43!DLX2;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.01!HOPX;;chr18:42260920..42260951,+!p4@SETBP1!1.22!15.75!SETBP1;;chr7:20826504..20826526,-!p1@SP8!1.21!15.25!SP8;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.25!EMX2;;chr7:14026022..14026044,-!p7@ETV1!1.20!14.74!ETV1;;chr7:14029312..14029325,-!p4@ETV1!1.19!18.04!ETV1;;chr1:23696448..23696453,-!p5@ZNF436!1.18!17.28!ZNF436;;chr9:77112244..77112262,+!p1@RORB!1.18!15.75!RORB;;chr10:31610110..31610159,+!p2@ZEB1!1.18!14.23!ZEB1;;chr11:31832807..31832823,-!p4@PAX6!1.18!14.23!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.18!14.23!PAX6;;chr2:5832508..5832524,+!p1@SOX11!1.18!13.98!SOX11;;chr16:1031762..1031781,+!p1@SOX8!1.18!13.98!SOX8;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.77!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.82!HEY1;;chr18:42260840..42260860,+!p2@SETBP1!1.17!13.72!SETBP1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.88!NFIA;;chr15:57511589..57511608,+!p4@TCF12!1.14!12.96!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.75!TFAP2C;;chr6:126070769..126070801,+!p1@HEY2!1.13!14.48!HEY2;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor1.CNhs11063.11275-116H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11275-116H6
 |is_a=EFO:0002091;;FF:0000120
 |is_obsolete=
+|library_id=CNhs11063
+|library_id_phase_based=2:CNhs11063
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11275
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11275
 |name=Neural stem cells, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 63: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11063,LSID723,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10011,,,
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 |rna_box=116
 |rna_catalog_number=custom
@@ Line 60: / Line 80: @@
 |rna_tube_id=116H6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10011.ATGTCA
 |sample_age=embryo 19week
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 104: @@
 |top_motifs=SOX2:3.66571068404;NKX2-3_NKX2-5:3.06998979594;NANOG:2.67442529317;TFDP1:2.66160994633;OCT4_SOX2{dimer}:2.5288807038;LHX3,4:2.34653633445;NKX6-1,2:2.28296011166;MZF1:2.24368282868;SOX17:2.24020477599;MYFfamily:2.18492828658;GFI1:2.10544568573;MTE{core}:2.07802644338;PRRX1,2:2.06240658081;LEF1_TCF7_TCF7L1,2:2.03262860607;PAX8:1.90199128316;ZFP161:1.87774852365;T:1.84457358013;PAX5:1.84256204199;NHLH1,2:1.77394501268;VSX1,2:1.74165419776;RFX1:1.64355882103;CUX2:1.61999395149;NKX2-1,4:1.55226481809;POU5F1:1.52207068311;SOX{8,9,10}:1.52040326273;CDC5L:1.51963622213;STAT1,3:1.49064680128;EGR1..3:1.49031477055;PBX1:1.48880767643;SPZ1:1.47596954456;HAND1,2:1.46736973839;JUN:1.45425027313;RBPJ:1.4380684454;MED-1{core}:1.40906202081;MAZ:1.37963549353;GTF2I:1.37515471727;ZBTB6:1.37107187296;HIC1:1.36313709014;DBP:1.25173552455;PATZ1:1.23256007412;RREB1:1.23111706531;ZNF384:1.22506616406;GFI1B:1.19238564044;PRDM1:1.14396851406;TFAP2B:1.07976259378;GATA4:1.03834633443;SMAD1..7,9:0.990353214642;YY1:0.980321496325;PAX6:0.954895863967;POU6F1:0.944222639324;ZIC1..3:0.938188572876;E2F1..5:0.91229803543;RFX2..5_RFXANK_RFXAP:0.902432382313;KLF4:0.868445279304;ALX1:0.858657307908;EBF1:0.855673812723;FOXM1:0.842289230801;HOX{A4,D4}:0.841955497138;ADNP_IRX_SIX_ZHX:0.831718449874;BPTF:0.827491938592;NR3C1:0.814260096623;CRX:0.809907143819;REST:0.747433042348;TEF:0.733564926133;TFCP2:0.730458195681;NRF1:0.726694999856;PAX4:0.706251462673;IKZF1:0.706126740658;GZF1:0.682098766163;POU3F1..4:0.674676432659;EP300:0.659275919839;NFY{A,B,C}:0.641686734317;BREu{core}:0.640294721517;TGIF1:0.633906955218;NR1H4:0.6087269291;GCM1,2:0.599021649965;ONECUT1,2:0.598049416929;ATF2:0.594157444974;TLX1..3_NFIC{dimer}:0.589350138458;GTF2A1,2:0.56341042693;ZNF423:0.540680181666;ZNF143:0.530442017305;PAX3,7:0.478760645533;SOX5:0.470545764804;AHR_ARNT_ARNT2:0.449627698945;HSF1,2:0.396843249671;HOXA9_MEIS1:0.365894123105;FOXN1:0.354958500822;PDX1:0.347800021818;MYB:0.325921275858;NKX3-2:0.31729778833;NFE2L2:0.272889640994;NANOG{mouse}:0.2649477524;FOXP3:0.249936483282;MYBL2:0.24895704448;NFE2L1:0.247338088974;RORA:0.226625246002;TLX2:0.2060302155;NFIX:0.204309702074;LMO2:0.194843075866;ELK1,4_GABP{A,B1}:0.159938840216;HBP1_HMGB_SSRP1_UBTF:0.159384259375;PAX1,9:0.155435503713;TOPORS:0.150915480208;TFAP2{A,C}:0.127209912958;MYOD1:0.110378439685;XCPE1{core}:0.0917630659743;MTF1:0.0904777741077;HOX{A5,B5}:0.0854784352603;FOXD3:0.0707577473396;CREB1:0.0471387061914;MAFB:0.0390303412758;UFEwm:0.0350813924913;TBX4,5:0.0234712643571;TP53:0.00912241888313;STAT2,4,6:-0.00316673163496;HMX1:-0.011172793339;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0155517814305;NFIL3:-0.029875556221;AR:-0.0382916734939;IKZF2:-0.0857231259124;SREBF1,2:-0.101354934669;HNF1A:-0.137868134751;EVI1:-0.143300506321;NFE2:-0.181759839464;CDX1,2,4:-0.184758063211;NKX2-2,8:-0.207806708228;FOS_FOS{B,L1}_JUN{B,D}:-0.210079107298;FOXP1:-0.232279353263;ATF4:-0.240610933129;NFATC1..3:-0.257157136154;POU2F1..3:-0.257369193117;POU1F1:-0.268634060533;HNF4A_NR2F1,2:-0.273371507219;BACH2:-0.281453520452;TFAP4:-0.283548371357;DMAP1_NCOR{1,2}_SMARC:-0.292984437662;TBP:-0.336339288394;FOSL2:-0.349901021927;MEF2{A,B,C,D}:-0.386618180139;ESRRA:-0.38852551413;FOXQ1:-0.403247892137;TEAD1:-0.411404935231;ALX4:-0.417726943936;SP1:-0.427207120165;SPIB:-0.43953207009;ELF1,2,4:-0.468434254084;RUNX1..3:-0.47038574292;FOX{D1,D2}:-0.472916699432;ZNF238:-0.491663703526;ATF5_CREB3:-0.498768177291;IRF1,2:-0.510454341688;NR6A1:-0.515846969975;EN1,2:-0.524596726848;NFKB1_REL_RELA:-0.532424942942;GATA6:-0.554952566018;SPI1:-0.577826168395;HMGA1,2:-0.633077815962;ZBTB16:-0.710983857583;PAX2:-0.727747218252;ZNF148:-0.730165173554;SRF:-0.74154253112;IRF7:-0.752256449074;HLF:-0.758169881122;FOX{I1,J2}:-0.768036545455;CEBPA,B_DDIT3:-0.783532575951;bHLH_family:-0.784305022602;FOXA2:-0.784802744445;FOXL1:-0.792346314898;FOX{F1,F2,J1}:-0.807061965593;XBP1:-0.810753091667;ARID5B:-0.827319956722;RXR{A,B,G}:-0.829928387452;ETS1,2:-0.850521484484;HOX{A6,A7,B6,B7}:-0.861966281158;STAT5{A,B}:-0.869034761405;ESR1:-0.885844234579;PPARG:-0.895476849047;SNAI1..3:-0.921858764496;FOXO1,3,4:-1.04365693081;NR5A1,2:-1.07623794714;PITX1..3:-1.09029374828;TAL1_TCF{3,4,12}:-1.10421781094;ATF6:-1.10430672238;ZEB1:-1.11227739523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15236042588;HES1:-1.25225562973;RXRA_VDR{dimer}:-1.27833387475;AIRE:-1.47819833318;GLI1..3:-1.61155061464;HIF1A:-1.72972142455;NKX3-1:-1.86838138186
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11275-116H6;search_select_hide=table117:FF:11275-116H6
 }}

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FF:11275-116H6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0