FF:11558-120D1: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Fibroblast - skin spinal muscular atrophy, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11911
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	2 year old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005679

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11911		CAGE		DRX008290		DRR009162

Accession ID Hg19

Library id		BAM		CTSS
CNhs11911		DRZ000587		DRZ001972

Accession ID Hg38

Library id		BAM		CTSS
CNhs11911		DRZ011937		DRZ013322

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0465
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.125
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.468
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0651
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0193
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0985
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.172
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.659
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.222
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.748
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.443
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.294
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.691
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.336
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.103
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0651
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.592
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.39
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.273
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0839
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.631
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.514
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11911

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0144
MA0003.1	MA0003.1	0.386
MA0004.1	MA0004.1	0.00497
MA0006.1	MA0006.1	0.34
MA0007.1	MA0007.1	0.39
MA0009.1	MA0009.1	0.25
MA0014.1	MA0014.1	0.535
MA0017.1	MA0017.1	0.0947
MA0018.2	MA0018.2	9.83891e-6
MA0019.1	MA0019.1	0.539
MA0024.1	MA0024.1	0.0842
MA0025.1	MA0025.1	1.5017e-4
MA0027.1	MA0027.1	0.641
MA0028.1	MA0028.1	0.431
MA0029.1	MA0029.1	0.511
MA0030.1	MA0030.1	0.592
MA0031.1	MA0031.1	0.866
MA0035.2	MA0035.2	0.0518
MA0038.1	MA0038.1	0.0644
MA0039.2	MA0039.2	0.15
MA0040.1	MA0040.1	0.35
MA0041.1	MA0041.1	0.16
MA0042.1	MA0042.1	0.082
MA0043.1	MA0043.1	8.17319e-4
MA0046.1	MA0046.1	0.41
MA0047.2	MA0047.2	0.824
MA0048.1	MA0048.1	0.183
MA0050.1	MA0050.1	0.89
MA0051.1	MA0051.1	0.0146
MA0052.1	MA0052.1	0.0233
MA0055.1	MA0055.1	0.46
MA0057.1	MA0057.1	0.619
MA0058.1	MA0058.1	6.95672e-4
MA0059.1	MA0059.1	0.00818
MA0060.1	MA0060.1	7.02431e-8
MA0061.1	MA0061.1	0.0023
MA0062.2	MA0062.2	0.0274
MA0065.2	MA0065.2	0.0352
MA0066.1	MA0066.1	0.654
MA0067.1	MA0067.1	2.04541e-4
MA0068.1	MA0068.1	0.616
MA0069.1	MA0069.1	0.0963
MA0070.1	MA0070.1	0.975
MA0071.1	MA0071.1	0.367
MA0072.1	MA0072.1	0.539
MA0073.1	MA0073.1	0.598
MA0074.1	MA0074.1	0.761
MA0076.1	MA0076.1	0.365
MA0077.1	MA0077.1	0.442
MA0078.1	MA0078.1	0.412
MA0079.2	MA0079.2	0.683
MA0080.2	MA0080.2	1.28202e-10
MA0081.1	MA0081.1	0.087
MA0083.1	MA0083.1	0.911
MA0084.1	MA0084.1	0.142
MA0087.1	MA0087.1	0.315
MA0088.1	MA0088.1	0.451
MA0090.1	MA0090.1	0.00537
MA0091.1	MA0091.1	0.0555
MA0092.1	MA0092.1	0.372
MA0093.1	MA0093.1	0.00732
MA0099.2	MA0099.2	3.77207e-6
MA0100.1	MA0100.1	0.132
MA0101.1	MA0101.1	7.18559e-5
MA0102.2	MA0102.2	0.862
MA0103.1	MA0103.1	2.81195e-4
MA0104.2	MA0104.2	0.00143
MA0105.1	MA0105.1	0.11
MA0106.1	MA0106.1	0.287
MA0107.1	MA0107.1	4.42757e-4
MA0108.2	MA0108.2	0.233
MA0111.1	MA0111.1	0.358
MA0112.2	MA0112.2	0.752
MA0113.1	MA0113.1	0.731
MA0114.1	MA0114.1	0.0399
MA0115.1	MA0115.1	0.0139
MA0116.1	MA0116.1	0.384
MA0117.1	MA0117.1	0.114
MA0119.1	MA0119.1	0.727
MA0122.1	MA0122.1	0.923
MA0124.1	MA0124.1	0.935
MA0125.1	MA0125.1	0.915
MA0131.1	MA0131.1	0.647
MA0135.1	MA0135.1	0.598
MA0136.1	MA0136.1	5.64425e-9
MA0137.2	MA0137.2	0.097
MA0138.2	MA0138.2	0.692
MA0139.1	MA0139.1	0.591
MA0140.1	MA0140.1	0.0497
MA0141.1	MA0141.1	0.169
MA0142.1	MA0142.1	0.301
MA0143.1	MA0143.1	0.471
MA0144.1	MA0144.1	0.43
MA0145.1	MA0145.1	0.662
MA0146.1	MA0146.1	0.581
MA0147.1	MA0147.1	0.00205
MA0148.1	MA0148.1	0.407
MA0149.1	MA0149.1	0.332
MA0150.1	MA0150.1	0.00266
MA0152.1	MA0152.1	0.00557
MA0153.1	MA0153.1	0.109
MA0154.1	MA0154.1	0.832
MA0155.1	MA0155.1	0.857
MA0156.1	MA0156.1	4.24571e-5
MA0157.1	MA0157.1	0.921
MA0159.1	MA0159.1	0.351
MA0160.1	MA0160.1	0.037
MA0162.1	MA0162.1	0.0971
MA0163.1	MA0163.1	0.116
MA0164.1	MA0164.1	0.757
MA0258.1	MA0258.1	0.167
MA0259.1	MA0259.1	0.0477

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11911

Novel motif	Logo	P-value
1	1	0.096
10	10	0.331
100	100	0.766
101	101	0.432
102	102	0.0951
103	103	0.817
104	104	0.996
105	105	0.384
106	106	0.00914
107	107	0.215
108	108	0.64
109	109	0.225
11	11	0.408
110	110	0.674
111	111	0.0427
112	112	0.846
113	113	0.258
114	114	0.99
115	115	0.344
116	116	0.41
117	117	0.906
118	118	0.859
119	119	0.0301
12	12	0.275
120	120	0.961
121	121	0.475
122	122	0.0824
123	123	6.58233e-4
124	124	0.439
125	125	0.456
126	126	0.365
127	127	0.424
128	128	0.223
129	129	0.396
13	13	0.38
130	130	0.489
131	131	0.794
132	132	0.135
133	133	0.245
134	134	0.245
135	135	0.539
136	136	0.4
137	137	0.0233
138	138	0.304
139	139	0.0514
14	14	0.38
140	140	0.837
141	141	0.101
142	142	0.526
143	143	0.0571
144	144	0.175
145	145	0.376
146	146	0.77
147	147	0.304
148	148	0.0371
149	149	0.201
15	15	0.129
150	150	0.905
151	151	0.563
152	152	0.779
153	153	0.126
154	154	0.235
155	155	0.0729
156	156	0.711
157	157	0.328
158	158	0.00337
159	159	0.908
16	16	0.363
160	160	0.959
161	161	0.874
162	162	0.868
163	163	0.916
164	164	0.148
165	165	0.322
166	166	0.0347
167	167	0.454
168	168	0.441
169	169	0.231
17	17	0.595
18	18	0.93
19	19	0.0271
2	2	0.395
20	20	0.595
21	21	0.697
22	22	0.26
23	23	0.819
24	24	0.354
25	25	0.223
26	26	0.694
27	27	0.756
28	28	0.619
29	29	0.696
3	3	0.797
30	30	0.0848
31	31	0.816
32	32	1.1402e-10
33	33	0.374
34	34	0.688
35	35	0.426
36	36	0.0255
37	37	0.514
38	38	0.441
39	39	0.584
4	4	0.113
40	40	0.041
41	41	0.0194
42	42	0.6
43	43	0.391
44	44	0.969
45	45	0.692
46	46	0.601
47	47	0.255
48	48	0.444
49	49	0.179
5	5	0.578
50	50	0.607
51	51	0.983
52	52	0.478
53	53	0.447
54	54	0.8
55	55	0.204
56	56	0.732
57	57	0.382
58	58	0.118
59	59	0.727
6	6	0.795
60	60	0.121
61	61	0.424
62	62	0.239
63	63	0.752
64	64	0.457
65	65	0.669
66	66	0.102
67	67	0.3
68	68	0.981
69	69	0.709
7	7	0.107
70	70	0.8
71	71	0.198
72	72	0.686
73	73	0.767
74	74	0.792
75	75	0.879
76	76	0.538
77	77	0.46
78	78	0.0903
79	79	4.61789e-4
8	8	0.637
80	80	0.596
81	81	0.25
82	82	0.875
83	83	0.0749
84	84	0.214
85	85	0.714
86	86	0.694
87	87	0.789
88	88	0.284
89	89	0.245
9	9	0.734
90	90	0.294
91	91	0.476
92	92	0.784
93	93	0.583
94	94	0.98
95	95	0.0939
96	96	0.365
97	97	0.592
98	98	0.432
99	99	0.0435

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11911

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005679
+|accession_numbers=CAGE;DRX008290;DRR009162;DRZ000587;DRZ001972;DRZ011937;DRZ013322
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.08!135.14!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!2.01!154.05!OSR2;;chr6:85474299..85474324,-!p1@TBX18!1.91!139.99!TBX18;;chr1:170633348..170633399,+!p2@PRRX1!1.87!98.60!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.83!177.49!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.37!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.69!62.40!PRRX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.63!41.38!SEBOX;;chr4:111544219..111544240,-!p1@PITX2!1.61!40.09!PITX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!61.59!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!165.85!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.51!38.47!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.26!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.44!30.07!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.39!39.44!TCF12;;chr2:239756739..239756755,+!p2@TWIST2!1.34!35.56!TWIST2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!440.49!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.31!32.49!CREB3L1;;chr1:170633058..170633084,+!p5@PRRX1!1.31!19.24!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.29!59.00!TWIST2;;chr7:44143978..44143989,+!p2@AEBP1!1.28!32.49!AEBP1;;chr6:391743..391759,+!p1@IRF4!1.27!17.62!IRF4;;chr19:13134772..13134822,+!p2@NFIX!1.26!25.22!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.26!18.75!PRRX1;;chr6:50786591..50786614,+!p1@TFAP2B!1.26!17.30!TFAP2B;;chr3:138665937..138665968,-!p1@FOXL2!1.25!16.97!FOXL2;;chr4:111558135..111558198,-!p2@PITX2!1.25!16.97!PITX2;;chr12:85673977..85674015,+!p1@ALX1!1.25!16.97!ALX1;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.19!EMX2;;chr10:63809013..63809041,+!p3@ARID5B!1.18!77.59!ARID5B;;chr5:2751762..2751784,-!p1@IRX2!1.18!14.22!IRX2;;chr15:80843484..80843499,+!p5@ARNT2!1.18!14.06!ARNT2;;chr7:44143997..44144008,+!p3@AEBP1!1.17!17.78!AEBP1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.16!13.58!SEBOX;;chr10:63809106..63809127,+!p1@ARID5B!1.15!174.74!ARID5B;;chr6:1389789..1389821,+!p1@FOXF2!1.14!17.62!FOXF2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.29!PRRX1;;chr10:31610110..31610159,+!p2@ZEB1!1.11!11.96!ZEB1;;chr9:129376233..129376251,+!p2@LMX1B!1.11!11.96!LMX1B;;chr1:170632137..170632172,+!p10@PRRX1!1.10!11.64!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.48!RUNX1T1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.90!FOXF1;;chr17:1959369..1959388,+!p2@HIC1!1.08!29.26!HIC1;;chr20:51588873..51588953,+!p1@TSHZ2!1.08!14.55!TSHZ2;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.73!NFATC4;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.35!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.05!10.35!EN1;;chr6:10412392..10412409,-!p4@TFAP2A!1.04!11.48!TFAP2A;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.19!NR2F1;;chr8:77593750..77593757,+!p3@ZFHX4!1.01!9.21!ZFHX4;;chr12:53614115..53614154,-!p1@RARG!1.00!48.98!RARG;;chr1:170632250..170632277,+!p7@PRRX1!1.00!8.89!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.00!8.89!PRRX1;;chr9:16870659..16870675,-!p2@BNC2!0.98!10.67!BNC2;;chr10:31607811..31607837,+!p6@ZEB1!0.98!8.57!ZEB1;;chr15:67418119..67418162,+!p5@SMAD3!0.97!9.21!SMAD3;;chr7:28448965..28448994,+!p2@CREB5!0.96!29.10!CREB5;;chr10:63809077..63809089,+!p5@ARID5B!0.96!18.10!ARID5B;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.15!OSR1;;chr10:63853436..63853442,+!p4@ARID5B!0.94!42.67!ARID5B;;chr18:52969674..52969685,-!p24@TCF4!0.94!7.76!TCF4;;chr1:170632683..170632696,+!p12@PRRX1!0.93!7.44!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.92!7.27!RUNX1T1;;chr15:67418177..67418204,+!p9@SMAD3!0.91!7.11!SMAD3;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.11!ZFY;;chr12:85674018..85674039,+!p3@ALX1!0.90!6.95!ALX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!71.12!GLIS2;;chr1:23696448..23696453,-!p5@ZNF436!0.89!8.41!ZNF436;;chr1:164528911..164528940,+!p7@PBX1!0.88!10.02!PBX1;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.08!TBX18;;chr4:111558118..111558133,-!p5@PITX2!0.88!6.63!PITX2;;chr18:52969844..52969895,-!p27@TCF4!0.88!6.63!TCF4;;chr10:63809090..63809097,+!p7@ARID5B!0.87!9.21!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.86!21.01!AHRR;;chr10:114710244..114710257,+!p3@TCF7L2!0.86!17.94!TCF7L2;;chr1:170632051..170632081,+!p16@PRRX1!0.86!6.30!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.86!6.30!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.86!6.30!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.86!6.30!PRRX1;;chr9:129376201..129376225,+!p1@LMX1B!0.85!6.14!LMX1B;;chr1:158979792..158979814,+!p2@IFI16!0.84!59.97!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.84!7.60!SMAD3;;chr10:63809134..63809145,+!p6@ARID5B!0.83!13.90!ARID5B;;chr1:23696308..23696339,-!p2@ZNF436!0.83!12.93!ZNF436;;chr6:10412576..10412599,-!p5@TFAP2A!0.83!5.82!TFAP2A;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.30!TCF4;;chr1:110613238..110613272,-!p1@ALX3!0.81!5.50!ALX3;;chr19:13106214..13106382,+!p1@NFIX!0.80!132.55!NFIX;;chr10:31607702..31607755,+!p3@ZEB1!0.80!6.30!ZEB1;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.33!EMX2;;chr17:1958388..1958404,+!p1@HIC1!0.79!35.72!HIC1;;chr10:119302508..119302559,+!p5@EMX2!0.79!5.17!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr1:23696348..23696363,-!p4@ZNF436!0.78!5.66!ZNF436;;chr5:158526917..158526932,-!p1@EBF1!0.77!13.09!EBF1;;chr12:53625846..53625861,-!p6@RARG!0.77!4.85!RARG;;chr10:63661437..63661465,+!p2@ARID5B!0.76!101.03!ARID5B;;chr5:92918894..92918912,+!p2@NR2F1!0.76!16.97!NR2F1;;chr15:42749722..42749739,-!p2@ZFP106!0.76!9.05!ZFP106;;chr5:43067636..43067674,+!p6@ZNF131!0.76!6.63!ZNF131;;chr17:38498594..38498661,+!p2@RARA!0.75!16.81!RARA;;chr9:16870710..16870763,-!p1@BNC2!0.75!8.41!BNC2;;chr10:63853479..63853496,+!p21@ARID5B!0.75!4.69!ARID5B;;chr15:66994561..66994597,+!p2@SMAD6!0.74!11.48!SMAD6;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr6:50786571..50786590,+!p2@TFAP2B!0.74!4.53!TFAP2B;;chr6:50789717..50789729,+!p4@TFAP2B!0.74!4.53!TFAP2B;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.53!ZNF668;;chr6:144329384..144329405,-!p1@PLAGL1!0.73!57.22!PLAGL1;;chr8:77593474..77593612,+!p1@ZFHX4!0.73!20.21!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!0.73!11.80!TET3;;chr1:170632762..170632786,+!p13@PRRX1!0.73!4.36!PRRX1;;chr10:31608127..31608156,+!p1@ZEB1!0.72!88.10!ZEB1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.20!PRRX1;;chr1:2985726..2985752,+!p2@PRDM16!0.72!4.20!PRDM16;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.20!TCF12;;chr16:49698178..49698209,-!p1@ZNF423!0.72!4.20!ZNF423;;chr5:124082322..124082364,-!p1@ZNF608!0.71!11.48!ZNF608;;chr1:158969752..158969780,+!p6@IFI16!0.71!7.60!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.30!IRX5;;chr11:46299186..46299195,+!p3@CREB3L1!0.71!4.69!CREB3L1;;chr14:75894714..75894733,+!p1@JDP2!0.70!128.19!JDP2;;chr14:61116183..61116208,-!p1@SIX1!0.70!16.81!SIX1;;chr12:53625966..53626012,-!p2@RARG!0.70!11.80!RARG;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.50!EBF1;;chr5:92919100..92919135,+!p3@NR2F1!0.70!5.01!NR2F1;;chr6:50786547..50786564,+!p3@TFAP2B!0.70!4.04!TFAP2B;;chr22:41763452..41763466,+!p2@TEF!0.70!4.04!TEF;;chr3:157823517..157823562,-!p1@SHOX2!0.69!4.20!SHOX2;;chr2:214014959..214015006,-!p4@IKZF2!0.69!3.88!IKZF2;;chr5:2751785..2751808,-!p2@IRX2!0.69!3.88!IRX2;;chr16:54964899..54964914,+!p2@IRX5!0.69!3.88!IRX5;;chr19:13135386..13135435,+!p4@NFIX!0.69!3.88!NFIX;;chr7:42276787..42276815,-!p1@GLI3!0.68!11.15!GLI3;;chr8:49833948..49833973,-!p2@SNAI2!0.67!26.83!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.24!HMGA2;;chr15:66995062..66995065,+!p8@SMAD6!0.67!3.72!SMAD6;;chr3:138665969..138665993,-!p2@FOXL2!0.67!3.72!FOXL2;;chr19:47523058..47523114,+!p1@NPAS1!0.67!3.72!NPAS1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.72!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.66!10.35!ZFPM2;;chr8:60031619..60031676,-!p1@TOX!0.66!8.41!TOX;;chr11:707063..707088,-!p4@DEAF1!0.66!4.69!DEAF1;;chr5:122424955..122424988,+!p2@PRDM6!0.66!3.56!PRDM6;;chr1:158969727..158969749,+!p11@IFI16!0.66!3.56!IFI16;;chr7:28725740..28725778,+!p1@CREB5!0.65!35.89!CREB5;;chr7:150974206..150974255,-!p1@SMARCD3!0.65!25.22!SMARCD3;;chr6:32095523..32095564,-!p2@ATF6B!0.65!5.01!ATF6B;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.14!FOXC1;;chr5:92919068..92919082,+!p5@NR2F1!0.64!4.20!NR2F1;;chr11:47279248..47279264,+!p3@NR1H3!0.64!3.88!NR1H3;;chr6:85474198..85474212,-!p3@TBX18!0.64!3.39!TBX18;;chr2:119604456..119604501,-!p2@EN1!0.64!3.39!EN1;;chr4:111544254..111544270,-!p3@PITX2!0.64!3.39!PITX2;;chrY:21906761..21906810,-!p2@KDM5D!0.64!3.39!KDM5D;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.96!ZMAT3;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.76!GATA2;;chr11:8102749..8102769,+!p2@TUB!0.63!6.95!TUB;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.23!IKZF2;;chr15:67430351..67430366,+!p10@SMAD3!0.63!3.23!SMAD3;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.48!PBX1;;chr7:113726357..113726443,+!p1@FOXP2!0.62!5.98!FOXP2;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.53!ARNT2;;chr19:13136241..13136258,+!p7@NFIX!0.62!4.53!NFIX;;chr4:26322616..26322652,+!p1@RBPJ!0.61!80.34!RBPJ;;chr1:170633100..170633112,+!p19@PRRX1!0.61!3.07!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.61!3.07!HLX;;chr6:1389989..1390019,+!p2@FOXF2!0.61!3.07!FOXF2;;chr11:47236584..47236679,+!p1@DDB2!0.60!39.28!DDB2;;chr11:65687362..65687436,+!p3@DRAP1!0.60!16.16!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.00!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.27!GLI2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!5.01!MEIS3P2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.91!IRX1;;chr8:99956759..99956767,+!p5@OSR2!0.59!2.91!OSR2;;chr10:119302645..119302712,+!p3@EMX2!0.59!2.91!EMX2;;chr1:170632907..170632916,+!p22@PRRX1!0.59!2.91!PRRX1;;chr9:110252035..110252057,-!p1@KLF4!0.58!55.93!KLF4;;chr10:77161504..77161530,-!p1@ZNF503!0.58!46.23!ZNF503;;chr9:2158443..2158481,+!p2@SMARCA2!0.58!9.38!SMARCA2;;chr6:126112074..126112144,+!p1@NCOA7!0.57!44.61!NCOA7;;chr16:8962202..8962222,-!p3@CARHSP1!0.57!5.33!CARHSP1;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.53!PITX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.57!3.72!ZFPM2;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.75!NR3C1;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11558-120D1
 |is_a=EFO:0002091;;FF:0000251
 |is_obsolete=
+|library_id=CNhs11911
+|library_id_phase_based=2:CNhs11911
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11558
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11558
 |name=Fibroblast - skin spinal muscular atrophy, donor2
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11911,LSID842,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=120
 |rna_catalog_number=custom
@@ Line 61: / Line 79: @@
 |rna_weight_ug=148.7395
 |sample_age=2 year old child
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11558-120D1;search_select_hide=table117:FF:11558-120D1
 }}

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FF:11558-120D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0