FF:11363-117I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004755 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004755 | |||
|accession_numbers=CAGE;DRX008487;DRR009359;DRZ000784;DRZ002169;DRZ012134;DRZ013519 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037201;DRR041567;DRZ007209 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.92!82.43!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.99!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.69!82.43!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.43!115.71!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.36!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!1.39!96.69!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.61!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!98.28!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!1.27!17.44!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!1.27!17.44!TBX20;;chr9:35732514..35732530,+!p5@CREB3!1.25!23.78!CREB3;;chr9:35732647..35732678,+!p2@CREB3!1.23!87.18!CREB3;;chr8:11561684..11561751,+!p1@GATA4!1.23!15.85!GATA4;;chr6:34204921..34204939,+!p3@HMGA1!1.21!451.75!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.44!FOXF1;;chr11:65687243..65687276,+!p8@DRAP1!1.14!17.44!DRAP1;;chr7:1577899..1577943,+!p3@MAFK!1.14!12.68!MAFK;;chr22:38598086..38598105,+!p1@MAFF!1.09!120.47!MAFF;;chr11:65687222..65687240,+!p7@DRAP1!1.08!14.27!DRAP1;;chr15:67458491..67458505,+!p18@SMAD3!1.08!11.10!SMAD3;;chr20:30433396..30433414,-!p1@FOXS1!1.08!11.10!FOXS1;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.29!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.44!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.52!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.51!SMAD3;;chr4:174451350..174451363,-!p3@HAND2!1.02!9.51!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.01!15.85!TWIST2;;chr9:35732592..35732640,+!p1@CREB3!1.00!120.47!CREB3;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.80!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.36!OSR1;;chr20:6748325..6748352,+!p1@BMP2!0.99!12.68!BMP2;;chr11:65687158..65687216,+!p4@DRAP1!0.98!50.72!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.98!9.51!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.10!PRRX2;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.51!GATA3;;chr11:65686776..65686787,+!p9@DRAP1!0.95!9.51!DRAP1;;chr19:47523058..47523114,+!p1@NPAS1!0.95!7.93!NPAS1;;chr2:239756671..239756732,+!p1@TWIST2!0.94!25.36!TWIST2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.93!551.62!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.36!ENO1;;chr6:1610293..1610310,+!p1@FOXC1!0.93!12.68!FOXC1;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.53!FOSL1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.93!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.44!FOXC2;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.93!HEY2;;chr4:2263809..2263854,-!p1@MXD4!0.88!267.88!MXD4;;chr2:85981969..85982019,+!p6@ATOH8!0.87!6.34!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.87!6.34!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.34!PRRX1;;chr9:35732561..35732587,+!p3@CREB3!0.85!26.95!CREB3;;chr3:52001396..52001425,-!p4@PCBP4!0.85!11.10!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.83!71.33!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.29!RARG;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.51!MLLT11;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.34!BNC1;;chr3:52001426..52001447,-!p3@PCBP4!0.80!15.85!PCBP4;;chr7:137686763..137686784,-!p5@CREB3L2!0.80!9.51!CREB3L2;;chr5:321810..321877,+!p1@AHRR!0.79!17.44!AHRR;;chr1:151032860..151032918,+!p1@MLLT11!0.78!64.99!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.12!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.51!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.77!258.37!ENO1;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.34!MLLT11;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.34!MEIS2;;chr15:67458836..67458859,+!p22@SMAD3!0.76!4.76!SMAD3;;chr19:13136057..13136085,+!p11@NFIX!0.76!4.76!NFIX;;chr2:85981073..85981091,+!p5@ATOH8!0.76!4.76!ATOH8;;chr11:65480222..65480241,+!p4@KAT5!0.76!4.76!KAT5;;chr12:66357317..66357328,+!p19@HMGA2!0.76!4.76!HMGA2;;chr7:1577952..1577963,+!p8@MAFK!0.76!4.76!MAFK;;chr6:34204973..34204990,+!p4@HMGA1!0.75!68.16!HMGA1;;chr10:22292591..22292606,-!p2@DNAJC1!0.75!7.93!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.93!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.75!7.93!ATOH8;;chr6:34205372..34205412,+!p5@HMGA1!0.74!25.36!HMGA1;;chr19:45261550..45261641,+!p6@BCL3!0.74!7.93!BCL3;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.34!PRRX1;;chr3:5021268..5021282,+!p4@BHLHE40!0.73!9.51!BHLHE40;;chr17:38498594..38498661,+!p2@RARA!0.72!15.85!RARA;;chr8:145159846..145159889,+!p6@MAF1!0.72!6.34!MAF1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.71!109.37!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.34!NFIX;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.29!ZMAT3;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.93!AEBP1;;chr7:137686552..137686564,-!p9@CREB3L2!0.70!6.34!CREB3L2;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.76!NR2F1;;chr2:231084820..231084836,-!p5@SP110!0.70!4.76!SP110;;chr1:23885981..23886002,-!p1@ID3!0.69!786.21!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.69!118.88!FOSL1;;chr10:8095593..8095625,+!p3@GATA3!0.69!4.76!GATA3;;chr1:151032833..151032850,+!p3@MLLT11!0.68!9.51!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.76!GATA3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.66!11.10!ZC3H7B;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.51!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!0.66!4.76!NCOA7;;chr6:35310363..35310382,+!p3@PPARD!0.64!14.27!PPARD;;chr17:46621101..46621143,-!p7@HOXB2!0.64!4.76!HOXB2;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.10!ZHX3;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.34!ENO1;;chr16:67881588..67881612,-!p2@CENPT!0.63!4.76!CENPT;;chr19:16435625..16435682,+!p1@KLF2!0.62!122.05!KLF2;;chr8:37553292..37553317,+!p1@ZNF703!0.62!90.35!ZNF703;;chr6:126070748..126070768,+!p2@HEY2!0.62!3.17!HEY2;;chr7:150945865..150945896,-!p4@SMARCD3!0.62!3.17!SMARCD3;;chr8:55370720..55370733,+!p2@SOX17!0.62!3.17!SOX17;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.17!SMAD3;;chr15:90294087..90294115,-!p1@MESP1!0.62!3.17!MESP1;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.17!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.62!3.17!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.17!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.62!3.17!FOXC2;;chr17:40477163..40477183,-!p7@STAT3!0.62!3.17!STAT3;;chr17:46621279..46621297,-!p13@HOXB2!0.62!3.17!HOXB2;;chr19:1863437..1863446,-!p5@KLF16!0.62!3.17!KLF16;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.17!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.62!3.17!PRRX2;;chr9:14314066..14314075,-!p11@NFIB!0.62!3.17!NFIB;;chr11:34642612..34642646,+!p1@EHF!0.62!3.17!EHF;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr11:62369084..62369093,-!p9@MTA2!0.62!3.17!MTA2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.17!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.62!3.17!SMAD9;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.17!PRRX1;;chr1:2234717..2234744,+!p4@SKI!0.62!3.17!SKI;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.17!OSR1;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.17!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.17!ATOH8;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.17!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.62!3.17!RARB;;chr3:52001374..52001385,-!p6@PCBP4!0.62!3.17!PCBP4;;chr12:66218255..66218304,+!p3@HMGA2!0.61!9.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.76!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.76!GATA6;;chr11:65686855..65686946,+!p1@DRAP1!0.60!272.64!DRAP1;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.72!PCBP4;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.93!MAFF;;chr19:53758058..53758088,-!p2@ZNF677!0.59!11.10!ZNF677;;chr19:58951496..58951539,-!p1@ZNF132!0.59!7.93!ZNF132;;chr8:145159447..145159458,+!p4@MAF1!0.59!7.93!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.76!HOXB2;;chr7:100076744..100076749,-!p8@TSC22D4!0.59!3.17!TSC22D4;;chr2:85980919..85980942,+!p4@ATOH8!0.59!3.17!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr12:124873852..124873881,-!p3@NCOR2!0.58!20.61!NCOR2;;chr16:3285119..3285133,-!p2@ZNF200!0.58!6.34!ZNF200;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.34!MLLT11;;chr8:72756063..72756125,-!p1@MSC!0.58!6.34!MSC;;chr11:65686702..65686715,+!p11@DRAP1!0.58!3.17!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.51!MAZ;;chr16:3185125..3185173,+!p1@ZNF213!0.57!7.93!ZNF213;;chr17:17723626..17723663,-!p4@SREBF1!0.57!6.34!SREBF1;;chr8:145159324..145159333,+!p5@MAF1!0.57!6.34!MAF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.17!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!0.57!3.17!MAFK;;chr8:72756637..72756664,-!p3@MSC!0.57!3.17!MSC;;chr16:30407021..30407061,+!p3@ZNF48!0.57!3.17!ZNF48;;chr19:12175596..12175605,+!p4@ZNF844!0.57!3.17!ZNF844;;chr1:23886132..23886156,-!p2@ID3!0.57!3.17!ID3;;chr3:185826286..185826318,-!p5@ETV5!0.57!3.17!ETV5;;chr5:92918919..92918942,+!p1@NR2F1!0.56!14.27!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.27!TOX2;;chr12:48298765..48298783,-!p2@VDR!0.56!6.34!VDR;;chr12:56575310..56575344,-!p3@SMARCC2!0.56!4.76!SMARCC2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.76!MECOM;;chr4:81105027..81105039,+!p3@PRDM8!0.56!3.17!PRDM8;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.68!TCF3;;chr5:139487608..139487663,+!p3@PURA!0.55!6.34!PURA;;chr1:221052994..221053008,+!p6@HLX!0.55!3.17!HLX;;chr4:81104958..81104981,+!p5@PRDM8!0.55!3.17!PRDM8;;chr6:10415276..10415341,-!p2@TFAP2A!0.54!3.17!TFAP2A;;chr10:44144187..44144201,-!p3@ZNF32!0.54!3.17!ZNF32;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.53!7.93!POU2F2;;chr17:42298339..42298361,-!p5@UBTF!0.53!6.34!UBTF;;chr2:185463247..185463263,+!p1@ZNF804A!0.53!4.76!ZNF804A;;chr19:58666441..58666478,-!p2@ZNF329!0.53!4.76!ZNF329;;chr19:38720294..38720348,-!p1@DPF1!0.53!3.17!DPF1;;chr8:72756023..72756055,-!p6@MSC!0.53!3.17!MSC;;chr12:7077134..7077154,-!p3@PHB2!0.53!3.17!PHB2;;chr8:128748308..128748324,+!p2@MYC!0.52!84.01!MYC;;chr6:35310395..35310410,+!p2@PPARD!0.52!11.10!PPARD;;chr10:94449703..94449718,+!p1@HHEX!0.52!11.10!HHEX;;chr19:56652686..56652701,+!p3@ZNF444!0.52!4.76!ZNF444;;chr1:8923998..8924033,-!p8@ENO1!0.52!4.76!ENO1;;chr18:19749517..19749531,+!p3@GATA6!0.52!4.76!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.52!4.76!NFIX;;chr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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.92!82.43!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.99!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.69!82.43!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!1.43!115.71!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.36!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!1.39!96.69!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.61!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!98.28!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!1.27!17.44!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!1.27!17.44!TBX20;;chr9:35732514..35732530,+!p5@CREB3!1.25!23.78!CREB3;;chr9:35732647..35732678,+!p2@CREB3!1.23!87.18!CREB3;;chr8:11561684..11561751,+!p1@GATA4!1.23!15.85!GATA4;;chr6:34204921..34204939,+!p3@HMGA1!1.21!451.75!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.44!FOXF1;;chr11:65687243..65687276,+!p8@DRAP1!1.14!17.44!DRAP1;;chr7:1577899..1577943,+!p3@MAFK!1.14!12.68!MAFK;;chr22:38598086..38598105,+!p1@MAFF!1.09!120.47!MAFF;;chr11:65687222..65687240,+!p7@DRAP1!1.08!14.27!DRAP1;;chr15:67458491..67458505,+!p18@SMAD3!1.08!11.10!SMAD3;;chr20:30433396..30433414,-!p1@FOXS1!1.08!11.10!FOXS1;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.29!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.44!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.52!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.51!SMAD3;;chr4:174451350..174451363,-!p3@HAND2!1.02!9.51!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.01!15.85!TWIST2;;chr9:35732592..35732640,+!p1@CREB3!1.00!120.47!CREB3;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.80!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.36!OSR1;;chr20:6748325..6748352,+!p1@BMP2!0.99!12.68!BMP2;;chr11:65687158..65687216,+!p4@DRAP1!0.98!50.72!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.98!9.51!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.10!PRRX2;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.51!GATA3;;chr11:65686776..65686787,+!p9@DRAP1!0.95!9.51!DRAP1;;chr19:47523058..47523114,+!p1@NPAS1!0.95!7.93!NPAS1;;chr2:239756671..239756732,+!p1@TWIST2!0.94!25.36!TWIST2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.93!551.62!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.36!ENO1;;chr6:1610293..1610310,+!p1@FOXC1!0.93!12.68!FOXC1;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.53!FOSL1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.93!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.44!FOXC2;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.93!HEY2;;chr4:2263809..2263854,-!p1@MXD4!0.88!267.88!MXD4;;chr2:85981969..85982019,+!p6@ATOH8!0.87!6.34!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.87!6.34!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.34!PRRX1;;chr9:35732561..35732587,+!p3@CREB3!0.85!26.95!CREB3;;chr3:52001396..52001425,-!p4@PCBP4!0.85!11.10!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.83!71.33!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.29!RARG;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.51!MLLT11;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.34!BNC1;;chr3:52001426..52001447,-!p3@PCBP4!0.80!15.85!PCBP4;;chr7:137686763..137686784,-!p5@CREB3L2!0.80!9.51!CREB3L2;;chr5:321810..321877,+!p1@AHRR!0.79!17.44!AHRR;;chr1:151032860..151032918,+!p1@MLLT11!0.78!64.99!MLLT11;;chr11:65686952..65686975,+!p5@DRAP1!0.78!30.12!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.51!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.77!258.37!ENO1;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.34!MLLT11;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.34!MEIS2;;chr15:67458836..67458859,+!p22@SMAD3!0.76!4.76!SMAD3;;chr19:13136057..13136085,+!p11@NFIX!0.76!4.76!NFIX;;chr2:85981073..85981091,+!p5@ATOH8!0.76!4.76!ATOH8;;chr11:65480222..65480241,+!p4@KAT5!0.76!4.76!KAT5;;chr12:66357317..66357328,+!p19@HMGA2!0.76!4.76!HMGA2;;chr7:1577952..1577963,+!p8@MAFK!0.76!4.76!MAFK;;chr6:34204973..34204990,+!p4@HMGA1!0.75!68.16!HMGA1;;chr10:22292591..22292606,-!p2@DNAJC1!0.75!7.93!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.93!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.75!7.93!ATOH8;;chr6:34205372..34205412,+!p5@HMGA1!0.74!25.36!HMGA1;;chr19:45261550..45261641,+!p6@BCL3!0.74!7.93!BCL3;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.34!PRRX1;;chr3:5021268..5021282,+!p4@BHLHE40!0.73!9.51!BHLHE40;;chr17:38498594..38498661,+!p2@RARA!0.72!15.85!RARA;;chr8:145159846..145159889,+!p6@MAF1!0.72!6.34!MAF1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.71!109.37!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.34!NFIX;;chr3:178789522..178789564,-!p2@ZMAT3!0.70!33.29!ZMAT3;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.93!AEBP1;;chr7:137686552..137686564,-!p9@CREB3L2!0.70!6.34!CREB3L2;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.76!NR2F1;;chr2:231084820..231084836,-!p5@SP110!0.70!4.76!SP110;;chr1:23885981..23886002,-!p1@ID3!0.69!786.21!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.69!118.88!FOSL1;;chr10:8095593..8095625,+!p3@GATA3!0.69!4.76!GATA3;;chr1:151032833..151032850,+!p3@MLLT11!0.68!9.51!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.76!GATA3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.66!11.10!ZC3H7B;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.51!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!0.66!4.76!NCOA7;;chr6:35310363..35310382,+!p3@PPARD!0.64!14.27!PPARD;;chr17:46621101..46621143,-!p7@HOXB2!0.64!4.76!HOXB2;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.10!ZHX3;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.34!ENO1;;chr16:67881588..67881612,-!p2@CENPT!0.63!4.76!CENPT;;chr19:16435625..16435682,+!p1@KLF2!0.62!122.05!KLF2;;chr8:37553292..37553317,+!p1@ZNF703!0.62!90.35!ZNF703;;chr6:126070748..126070768,+!p2@HEY2!0.62!3.17!HEY2;;chr7:150945865..150945896,-!p4@SMARCD3!0.62!3.17!SMARCD3;;chr8:55370720..55370733,+!p2@SOX17!0.62!3.17!SOX17;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.17!SMAD3;;chr15:90294087..90294115,-!p1@MESP1!0.62!3.17!MESP1;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.17!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.62!3.17!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.17!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.62!3.17!FOXC2;;chr17:40477163..40477183,-!p7@STAT3!0.62!3.17!STAT3;;chr17:46621279..46621297,-!p13@HOXB2!0.62!3.17!HOXB2;;chr19:1863437..1863446,-!p5@KLF16!0.62!3.17!KLF16;;chr9:16705069..16705086,-!p3@BNC2!0.62!3.17!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.62!3.17!PRRX2;;chr9:14314066..14314075,-!p11@NFIB!0.62!3.17!NFIB;;chr11:34642612..34642646,+!p1@EHF!0.62!3.17!EHF;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr11:62369084..62369093,-!p9@MTA2!0.62!3.17!MTA2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.17!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.62!3.17!SMAD9;;chr1:170632723..170632739,+!p8@PRRX1!0.62!3.17!PRRX1;;chr1:2234717..2234744,+!p4@SKI!0.62!3.17!SKI;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.17!OSR1;;chr2:85981027..85981047,+!p8@ATOH8!0.62!3.17!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.17!ATOH8;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.17!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.62!3.17!RARB;;chr3:52001374..52001385,-!p6@PCBP4!0.62!3.17!PCBP4;;chr12:66218255..66218304,+!p3@HMGA2!0.61!9.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.76!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.76!GATA6;;chr11:65686855..65686946,+!p1@DRAP1!0.60!272.64!DRAP1;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.72!PCBP4;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.93!MAFF;;chr19:53758058..53758088,-!p2@ZNF677!0.59!11.10!ZNF677;;chr19:58951496..58951539,-!p1@ZNF132!0.59!7.93!ZNF132;;chr8:145159447..145159458,+!p4@MAF1!0.59!7.93!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.76!HOXB2;;chr7:100076744..100076749,-!p8@TSC22D4!0.59!3.17!TSC22D4;;chr2:85980919..85980942,+!p4@ATOH8!0.59!3.17!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr12:124873852..124873881,-!p3@NCOR2!0.58!20.61!NCOR2;;chr16:3285119..3285133,-!p2@ZNF200!0.58!6.34!ZNF200;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.34!MLLT11;;chr8:72756063..72756125,-!p1@MSC!0.58!6.34!MSC;;chr11:65686702..65686715,+!p11@DRAP1!0.58!3.17!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.51!MAZ;;chr16:3185125..3185173,+!p1@ZNF213!0.57!7.93!ZNF213;;chr17:17723626..17723663,-!p4@SREBF1!0.57!6.34!SREBF1;;chr8:145159324..145159333,+!p5@MAF1!0.57!6.34!MAF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.17!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!0.57!3.17!MAFK;;chr8:72756637..72756664,-!p3@MSC!0.57!3.17!MSC;;chr16:30407021..30407061,+!p3@ZNF48!0.57!3.17!ZNF48;;chr19:12175596..12175605,+!p4@ZNF844!0.57!3.17!ZNF844;;chr1:23886132..23886156,-!p2@ID3!0.57!3.17!ID3;;chr3:185826286..185826318,-!p5@ETV5!0.57!3.17!ETV5;;chr5:92918919..92918942,+!p1@NR2F1!0.56!14.27!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.27!TOX2;;chr12:48298765..48298783,-!p2@VDR!0.56!6.34!VDR;;chr12:56575310..56575344,-!p3@SMARCC2!0.56!4.76!SMARCC2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.76!MECOM;;chr4:81105027..81105039,+!p3@PRDM8!0.56!3.17!PRDM8;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.68!TCF3;;chr5:139487608..139487663,+!p3@PURA!0.55!6.34!PURA;;chr1:221052994..221053008,+!p6@HLX!0.55!3.17!HLX;;chr4:81104958..81104981,+!p5@PRDM8!0.55!3.17!PRDM8;;chr6:10415276..10415341,-!p2@TFAP2A!0.54!3.17!TFAP2A;;chr10:44144187..44144201,-!p3@ZNF32!0.54!3.17!ZNF32;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.53!7.93!POU2F2;;chr17:42298339..42298361,-!p5@UBTF!0.53!6.34!UBTF;;chr2:185463247..185463263,+!p1@ZNF804A!0.53!4.76!ZNF804A;;chr19:58666441..58666478,-!p2@ZNF329!0.53!4.76!ZNF329;;chr19:38720294..38720348,-!p1@DPF1!0.53!3.17!DPF1;;chr8:72756023..72756055,-!p6@MSC!0.53!3.17!MSC;;chr12:7077134..7077154,-!p3@PHB2!0.53!3.17!PHB2;;chr8:128748308..128748324,+!p2@MYC!0.52!84.01!MYC;;chr6:35310395..35310410,+!p2@PPARD!0.52!11.10!PPARD;;chr10:94449703..94449718,+!p1@HHEX!0.52!11.10!HHEX;;chr19:56652686..56652701,+!p3@ZNF444!0.52!4.76!ZNF444;;chr1:8923998..8924033,-!p8@ENO1!0.52!4.76!ENO1;;chr18:19749517..19749531,+!p3@GATA6!0.52!4.76!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.52!4.76!NFIX;;chr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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11363-117I4 | |id=FF:11363-117I4 | ||
|is_a=EFO:0002091;;FF:0000172 | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11987 | |||
|library_id_phase_based=2:CNhs11987 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11363 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GAGTGG.11363 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11363 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GAGTGG.11363 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor2 | |name=Smooth Muscle Cells - Coronary Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11987,LSID836,release011,COMPLETED | |profile_hcage=CNhs11987,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 62: | Line 82: | ||
|rna_tube_id=117I4 | |rna_tube_id=117I4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GAGTGG | |||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 85: | Line 106: | ||
|top_motifs=PPARG:2.00824986977;GLI1..3:1.58833419998;GTF2A1,2:1.48506982573;POU3F1..4:1.40899676245;ZIC1..3:1.22472631874;CRX:1.2003623937;HES1:1.19239473146;IKZF1:1.18288618494;ALX4:1.1460542915;ZBTB6:1.14604098197;ONECUT1,2:1.11144269368;EBF1:1.09359667127;NR5A1,2:1.05776992243;HMX1:1.0324530927;HOXA9_MEIS1:1.00888197739;ZNF238:1.00645620757;ZNF423:0.92980130128;LHX3,4:0.898736611028;NKX2-2,8:0.881673758539;ATF6:0.870707647081;HIF1A:0.869793792319;TLX1..3_NFIC{dimer}:0.830919623217;AR:0.817825917466;GZF1:0.803004067233;NKX3-1:0.783728318456;XBP1:0.780912963637;TFAP4:0.778961291903;NFE2L1:0.778544439065;MAFB:0.754738868945;GCM1,2:0.717445931316;POU6F1:0.698884629279;TBP:0.6842316743;PAX1,9:0.681031033557;RXR{A,B,G}:0.667555159477;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653886127386;NR3C1:0.584116150435;SRF:0.547205219102;STAT5{A,B}:0.546998607886;SMAD1..7,9:0.528123822873;TEAD1:0.524760086517;TP53:0.521041648976;HOX{A5,B5}:0.514537707447;ZNF148:0.512515795756;TFAP2{A,C}:0.510851340479;TFCP2:0.46733832546;UFEwm:0.459831950354;FOX{I1,J2}:0.457214997038;TBX4,5:0.451933144249;REST:0.436244901436;TEF:0.395115162648;NANOG:0.387983252737;NKX3-2:0.387121687181;NFE2L2:0.382749279634;CDC5L:0.377049553124;bHLH_family:0.373768707652;FOSL2:0.366607718156;HOX{A6,A7,B6,B7}:0.353072620047;RXRA_VDR{dimer}:0.347441873629;LMO2:0.281972773709;TAL1_TCF{3,4,12}:0.27963423489;LEF1_TCF7_TCF7L1,2:0.277127514453;NR6A1:0.272615133999;HLF:0.24560158801;ESRRA:0.238704980857;PBX1:0.230370847097;GATA6:0.219253835161;NANOG{mouse}:0.210304893999;EN1,2:0.207499918598;POU2F1..3:0.20406027601;NHLH1,2:0.193832600186;BACH2:0.175310067581;HNF1A:0.158996741939;HIC1:0.141773719218;AIRE:0.141471965207;FOS_FOS{B,L1}_JUN{B,D}:0.108295642245;TLX2:0.106152816363;NFATC1..3:0.0965736366788;MYBL2:0.0939007696207;GTF2I:0.0769706638324;SPZ1:0.0598795113573;KLF4:0.0578979955486;PAX5:0.0285260047135;HAND1,2:0.0218982211304;GFI1B:0.0170649636795;FOXL1:-0.00923709451954;MYFfamily:-0.0110147010029;MEF2{A,B,C,D}:-0.0120054149059;ESR1:-0.0205118464982;POU1F1:-0.0378364816847;SOX{8,9,10}:-0.0389548034082;STAT2,4,6:-0.039786116222;ARID5B:-0.0465711201347;MYOD1:-0.0478572789981;HBP1_HMGB_SSRP1_UBTF:-0.0499564518211;JUN:-0.065272056137;FOXQ1:-0.0707675930997;SOX17:-0.0814989862209;MTE{core}:-0.102226109411;ELK1,4_GABP{A,B1}:-0.110940332431;HMGA1,2:-0.112188266816;RUNX1..3:-0.114347275671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.126452471306;SOX2:-0.128726446052;HSF1,2:-0.153332558553;NFKB1_REL_RELA:-0.159098353232;XCPE1{core}:-0.188501428722;NFE2:-0.19261625059;ALX1:-0.195638329066;ZEB1:-0.218927102556;PAX8:-0.226134223513;TOPORS:-0.239177924838;CEBPA,B_DDIT3:-0.257649694596;ZBTB16:-0.268243831335;ATF2:-0.268442141619;MTF1:-0.274602125261;VSX1,2:-0.28285586394;TGIF1:-0.296447662746;YY1:-0.305160064647;HOX{A4,D4}:-0.322240810274;PAX6:-0.323383642608;SPIB:-0.32565088371;ETS1,2:-0.352003452926;SNAI1..3:-0.37466152496;PAX2:-0.383303160091;TFAP2B:-0.384072445011;RFX1:-0.395774365387;NFIX:-0.397219556222;ZNF143:-0.410961326583;PITX1..3:-0.413417807446;NFIL3:-0.442330225339;SOX5:-0.445384390662;FOXA2:-0.451297145371;NKX2-3_NKX2-5:-0.452390319604;HNF4A_NR2F1,2:-0.474125560621;OCT4_SOX2{dimer}:-0.499286941463;GATA4:-0.499731128278;PRRX1,2:-0.509709166886;MAZ:-0.51063979183;FOX{F1,F2,J1}:-0.520795638082;T:-0.523545446316;SPI1:-0.534853054037;ZFP161:-0.541358994451;EVI1:-0.548444221522;ADNP_IRX_SIX_ZHX:-0.548950836809;RREB1:-0.566849598594;PAX3,7:-0.573472969217;AHR_ARNT_ARNT2:-0.580985517003;NR1H4:-0.589189722246;DMAP1_NCOR{1,2}_SMARC:-0.593320250814;FOXM1:-0.605787002913;ELF1,2,4:-0.613124245241;SP1:-0.625535320243;PATZ1:-0.651071586837;CUX2:-0.652264525092;MED-1{core}:-0.678844000059;MZF1:-0.706784583977;PDX1:-0.714337928128;MYB:-0.734262163798;CDX1,2,4:-0.735670642117;EGR1..3:-0.740689839762;PRDM1:-0.758283772113;RORA:-0.768267460529;EP300:-0.784130835306;NRF1:-0.787635559024;ATF4:-0.794715232267;FOX{D1,D2}:-0.814091910169;IKZF2:-0.826108374;FOXO1,3,4:-0.828756151312;FOXN1:-0.85471022769;RFX2..5_RFXANK_RFXAP:-0.924059599892;ATF5_CREB3:-0.925920957517;IRF1,2:-0.944188732132;POU5F1:-0.981053511574;PAX4:-1.00466326411;ZNF384:-1.00938570399;CREB1:-1.01235419038;DBP:-1.01252345297;IRF7:-1.03856048311;GFI1:-1.1733606594;NFY{A,B,C}:-1.25296271887;E2F1..5:-1.27793247042;FOXP3:-1.31709973307;FOXP1:-1.39661550863;NKX6-1,2:-1.41215775573;SREBF1,2:-1.47447584857;BPTF:-1.50379103346;BREu{core}:-1.55101837718;TFDP1:-1.65302976465;RBPJ:-1.70801181629;FOXD3:-1.80847733231;NKX2-1,4:-1.91566474243;STAT1,3:-2.63105126998 | |top_motifs=PPARG:2.00824986977;GLI1..3:1.58833419998;GTF2A1,2:1.48506982573;POU3F1..4:1.40899676245;ZIC1..3:1.22472631874;CRX:1.2003623937;HES1:1.19239473146;IKZF1:1.18288618494;ALX4:1.1460542915;ZBTB6:1.14604098197;ONECUT1,2:1.11144269368;EBF1:1.09359667127;NR5A1,2:1.05776992243;HMX1:1.0324530927;HOXA9_MEIS1:1.00888197739;ZNF238:1.00645620757;ZNF423:0.92980130128;LHX3,4:0.898736611028;NKX2-2,8:0.881673758539;ATF6:0.870707647081;HIF1A:0.869793792319;TLX1..3_NFIC{dimer}:0.830919623217;AR:0.817825917466;GZF1:0.803004067233;NKX3-1:0.783728318456;XBP1:0.780912963637;TFAP4:0.778961291903;NFE2L1:0.778544439065;MAFB:0.754738868945;GCM1,2:0.717445931316;POU6F1:0.698884629279;TBP:0.6842316743;PAX1,9:0.681031033557;RXR{A,B,G}:0.667555159477;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653886127386;NR3C1:0.584116150435;SRF:0.547205219102;STAT5{A,B}:0.546998607886;SMAD1..7,9:0.528123822873;TEAD1:0.524760086517;TP53:0.521041648976;HOX{A5,B5}:0.514537707447;ZNF148:0.512515795756;TFAP2{A,C}:0.510851340479;TFCP2:0.46733832546;UFEwm:0.459831950354;FOX{I1,J2}:0.457214997038;TBX4,5:0.451933144249;REST:0.436244901436;TEF:0.395115162648;NANOG:0.387983252737;NKX3-2:0.387121687181;NFE2L2:0.382749279634;CDC5L:0.377049553124;bHLH_family:0.373768707652;FOSL2:0.366607718156;HOX{A6,A7,B6,B7}:0.353072620047;RXRA_VDR{dimer}:0.347441873629;LMO2:0.281972773709;TAL1_TCF{3,4,12}:0.27963423489;LEF1_TCF7_TCF7L1,2:0.277127514453;NR6A1:0.272615133999;HLF:0.24560158801;ESRRA:0.238704980857;PBX1:0.230370847097;GATA6:0.219253835161;NANOG{mouse}:0.210304893999;EN1,2:0.207499918598;POU2F1..3:0.20406027601;NHLH1,2:0.193832600186;BACH2:0.175310067581;HNF1A:0.158996741939;HIC1:0.141773719218;AIRE:0.141471965207;FOS_FOS{B,L1}_JUN{B,D}:0.108295642245;TLX2:0.106152816363;NFATC1..3:0.0965736366788;MYBL2:0.0939007696207;GTF2I:0.0769706638324;SPZ1:0.0598795113573;KLF4:0.0578979955486;PAX5:0.0285260047135;HAND1,2:0.0218982211304;GFI1B:0.0170649636795;FOXL1:-0.00923709451954;MYFfamily:-0.0110147010029;MEF2{A,B,C,D}:-0.0120054149059;ESR1:-0.0205118464982;POU1F1:-0.0378364816847;SOX{8,9,10}:-0.0389548034082;STAT2,4,6:-0.039786116222;ARID5B:-0.0465711201347;MYOD1:-0.0478572789981;HBP1_HMGB_SSRP1_UBTF:-0.0499564518211;JUN:-0.065272056137;FOXQ1:-0.0707675930997;SOX17:-0.0814989862209;MTE{core}:-0.102226109411;ELK1,4_GABP{A,B1}:-0.110940332431;HMGA1,2:-0.112188266816;RUNX1..3:-0.114347275671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.126452471306;SOX2:-0.128726446052;HSF1,2:-0.153332558553;NFKB1_REL_RELA:-0.159098353232;XCPE1{core}:-0.188501428722;NFE2:-0.19261625059;ALX1:-0.195638329066;ZEB1:-0.218927102556;PAX8:-0.226134223513;TOPORS:-0.239177924838;CEBPA,B_DDIT3:-0.257649694596;ZBTB16:-0.268243831335;ATF2:-0.268442141619;MTF1:-0.274602125261;VSX1,2:-0.28285586394;TGIF1:-0.296447662746;YY1:-0.305160064647;HOX{A4,D4}:-0.322240810274;PAX6:-0.323383642608;SPIB:-0.32565088371;ETS1,2:-0.352003452926;SNAI1..3:-0.37466152496;PAX2:-0.383303160091;TFAP2B:-0.384072445011;RFX1:-0.395774365387;NFIX:-0.397219556222;ZNF143:-0.410961326583;PITX1..3:-0.413417807446;NFIL3:-0.442330225339;SOX5:-0.445384390662;FOXA2:-0.451297145371;NKX2-3_NKX2-5:-0.452390319604;HNF4A_NR2F1,2:-0.474125560621;OCT4_SOX2{dimer}:-0.499286941463;GATA4:-0.499731128278;PRRX1,2:-0.509709166886;MAZ:-0.51063979183;FOX{F1,F2,J1}:-0.520795638082;T:-0.523545446316;SPI1:-0.534853054037;ZFP161:-0.541358994451;EVI1:-0.548444221522;ADNP_IRX_SIX_ZHX:-0.548950836809;RREB1:-0.566849598594;PAX3,7:-0.573472969217;AHR_ARNT_ARNT2:-0.580985517003;NR1H4:-0.589189722246;DMAP1_NCOR{1,2}_SMARC:-0.593320250814;FOXM1:-0.605787002913;ELF1,2,4:-0.613124245241;SP1:-0.625535320243;PATZ1:-0.651071586837;CUX2:-0.652264525092;MED-1{core}:-0.678844000059;MZF1:-0.706784583977;PDX1:-0.714337928128;MYB:-0.734262163798;CDX1,2,4:-0.735670642117;EGR1..3:-0.740689839762;PRDM1:-0.758283772113;RORA:-0.768267460529;EP300:-0.784130835306;NRF1:-0.787635559024;ATF4:-0.794715232267;FOX{D1,D2}:-0.814091910169;IKZF2:-0.826108374;FOXO1,3,4:-0.828756151312;FOXN1:-0.85471022769;RFX2..5_RFXANK_RFXAP:-0.924059599892;ATF5_CREB3:-0.925920957517;IRF1,2:-0.944188732132;POU5F1:-0.981053511574;PAX4:-1.00466326411;ZNF384:-1.00938570399;CREB1:-1.01235419038;DBP:-1.01252345297;IRF7:-1.03856048311;GFI1:-1.1733606594;NFY{A,B,C}:-1.25296271887;E2F1..5:-1.27793247042;FOXP3:-1.31709973307;FOXP1:-1.39661550863;NKX6-1,2:-1.41215775573;SREBF1,2:-1.47447584857;BPTF:-1.50379103346;BREu{core}:-1.55101837718;TFDP1:-1.65302976465;RBPJ:-1.70801181629;FOXD3:-1.80847733231;NKX2-1,4:-1.91566474243;STAT1,3:-2.63105126998 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11363-117I4;search_select_hide=table117:FF:11363-117I4 | |||
}} | }} |
Latest revision as of 17:55, 4 June 2020
Name: | Smooth Muscle Cells - Coronary Artery, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11987 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11987
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11987
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.104 |
10 | 10 | 0.801 |
100 | 100 | 0.891 |
101 | 101 | 0.704 |
102 | 102 | 0.765 |
103 | 103 | 0.161 |
104 | 104 | 0.364 |
105 | 105 | 0.966 |
106 | 106 | 0.011 |
107 | 107 | 0.0524 |
108 | 108 | 0.304 |
109 | 109 | 0.0987 |
11 | 11 | 0.0452 |
110 | 110 | 0.305 |
111 | 111 | 0.878 |
112 | 112 | 0.259 |
113 | 113 | 0.225 |
114 | 114 | 0.0296 |
115 | 115 | 0.299 |
116 | 116 | 0.149 |
117 | 117 | 0.313 |
118 | 118 | 0.585 |
119 | 119 | 0.167 |
12 | 12 | 0.912 |
120 | 120 | 0.242 |
121 | 121 | 0.648 |
122 | 122 | 1 |
123 | 123 | 0.909 |
124 | 124 | 0.891 |
125 | 125 | 0.116 |
126 | 126 | 0.709 |
127 | 127 | 0.0459 |
128 | 128 | 0.0695 |
129 | 129 | 0.575 |
13 | 13 | 0.536 |
130 | 130 | 0.512 |
131 | 131 | 0.161 |
132 | 132 | 0.87 |
133 | 133 | 0.756 |
134 | 134 | 0.841 |
135 | 135 | 0.413 |
136 | 136 | 0.953 |
137 | 137 | 0.926 |
138 | 138 | 0.384 |
139 | 139 | 0.0126 |
14 | 14 | 0.873 |
140 | 140 | 0.69 |
141 | 141 | 0.35 |
142 | 142 | 0.708 |
143 | 143 | 0.00346 |
144 | 144 | 0.936 |
145 | 145 | 0.2 |
146 | 146 | 0.353 |
147 | 147 | 0.159 |
148 | 148 | 0.501 |
149 | 149 | 0.056 |
15 | 15 | 0.0912 |
150 | 150 | 0.341 |
151 | 151 | 0.288 |
152 | 152 | 0.0354 |
153 | 153 | 0.973 |
154 | 154 | 0.803 |
155 | 155 | 0.543 |
156 | 156 | 0.618 |
157 | 157 | 0.76 |
158 | 158 | 0.346 |
159 | 159 | 0.533 |
16 | 16 | 0.0904 |
160 | 160 | 0.0393 |
161 | 161 | 0.308 |
162 | 162 | 0.81 |
163 | 163 | 0.596 |
164 | 164 | 0.231 |
165 | 165 | 0.707 |
166 | 166 | 0.667 |
167 | 167 | 0.366 |
168 | 168 | 0.778 |
169 | 169 | 0.0226 |
17 | 17 | 0.22 |
18 | 18 | 0.0636 |
19 | 19 | 0.0863 |
2 | 2 | 0.534 |
20 | 20 | 0.621 |
21 | 21 | 0.475 |
22 | 22 | 0.211 |
23 | 23 | 0.106 |
24 | 24 | 0.433 |
25 | 25 | 0.885 |
26 | 26 | 0.0308 |
27 | 27 | 0.442 |
28 | 28 | 0.467 |
29 | 29 | 0.261 |
3 | 3 | 0.229 |
30 | 30 | 0.847 |
31 | 31 | 0.419 |
32 | 32 | 2.49955e-4 |
33 | 33 | 0.824 |
34 | 34 | 0.639 |
35 | 35 | 0.301 |
36 | 36 | 0.847 |
37 | 37 | 0.0537 |
38 | 38 | 0.485 |
39 | 39 | 0.33 |
4 | 4 | 0.453 |
40 | 40 | 0.377 |
41 | 41 | 0.668 |
42 | 42 | 0.434 |
43 | 43 | 0.194 |
44 | 44 | 0.118 |
45 | 45 | 0.514 |
46 | 46 | 0.0437 |
47 | 47 | 0.121 |
48 | 48 | 0.118 |
49 | 49 | 0.299 |
5 | 5 | 0.495 |
50 | 50 | 0.606 |
51 | 51 | 0.469 |
52 | 52 | 0.623 |
53 | 53 | 0.813 |
54 | 54 | 0.618 |
55 | 55 | 0.174 |
56 | 56 | 0.387 |
57 | 57 | 0.163 |
58 | 58 | 0.942 |
59 | 59 | 0.0356 |
6 | 6 | 0.764 |
60 | 60 | 0.302 |
61 | 61 | 0.831 |
62 | 62 | 0.432 |
63 | 63 | 0.0726 |
64 | 64 | 0.164 |
65 | 65 | 0.101 |
66 | 66 | 0.84 |
67 | 67 | 0.227 |
68 | 68 | 0.16 |
69 | 69 | 0.0325 |
7 | 7 | 0.756 |
70 | 70 | 0.00631 |
71 | 71 | 0.173 |
72 | 72 | 0.904 |
73 | 73 | 0.0212 |
74 | 74 | 0.385 |
75 | 75 | 0.331 |
76 | 76 | 0.972 |
77 | 77 | 0.0203 |
78 | 78 | 0.325 |
79 | 79 | 0.0471 |
8 | 8 | 0.0124 |
80 | 80 | 0.919 |
81 | 81 | 0.228 |
82 | 82 | 0.25 |
83 | 83 | 0.344 |
84 | 84 | 0.618 |
85 | 85 | 0.0288 |
86 | 86 | 0.559 |
87 | 87 | 0.0828 |
88 | 88 | 0.0715 |
89 | 89 | 0.0502 |
9 | 9 | 0.555 |
90 | 90 | 0.669 |
91 | 91 | 0.254 |
92 | 92 | 0.23 |
93 | 93 | 0.806 |
94 | 94 | 0.0935 |
95 | 95 | 0.225 |
96 | 96 | 0.513 |
97 | 97 | 0.442 |
98 | 98 | 0.17 |
99 | 99 | 0.0493 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11987
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)