FF:11231-116C7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005408 | ||
|accession_numbers=CAGE;DRX008401;DRR009273;DRZ000698;DRZ002083 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005408 | ||
|accession_numbers=CAGE;DRX008401;DRR009273;DRZ000698;DRZ002083;DRZ012048;DRZ013433 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037024;DRR041390;DRZ007032 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.27!186.50!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.25!175.75!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.05!110.62!IRF8;;chr5:133451294..133451310,+!p2@TCF7!1.99!95.94!TCF7;;chr12:54778471..54778528,-!p1@ZNF385A!1.92!81.67!ZNF385A;;chr1:25256756..25256774,-!p1@RUNX3!1.89!140.60!RUNX3;;chr3:63953435..63953499,+!p1@ATXN7!1.84!68.03!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.82!65.34!LEF1;;chr19:54041669..54041697,+!p2@ZNF331!1.80!62.44!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.69!IKZF1;;chr19:54058073..54058088,+!p1@ZNF331!1.75!55.83!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.73!71.54!STAT4;;chr6:106546808..106546833,+!p3@PRDM1!1.69!59.34!PRDM1;;chr5:133450365..133450444,+!p1@TCF7!1.67!202.01!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.64!42.59!SP140;;chr2:157189180..157189290,-!p1@NR4A2!1.63!209.87!NR4A2;;chr6:91006518..91006570,-!p1@BACH2!1.61!88.08!BACH2;;chr3:71355163..71355209,-!p5@FOXP1!1.61!54.38!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.61!40.11!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.58!97.59!AKNA;;chr6:391743..391759,+!p1@IRF4!1.58!36.80!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.56!447.86!ZEB2;;chr3:18486354..18486377,-!p2@SATB1!1.52!40.11!SATB1;;chr2:100759010..100759035,-!p1@AFF3!1.49!29.57!AFF3;;chr20:50159198..50159299,-!p1@NFATC2!1.48!42.39!NFATC2;;chr17:45810594..45810608,+!p1@TBX21!1.46!28.12!TBX21;;chr15:60884706..60884743,-!p1@RORA!1.45!135.64!RORA;;chr11:47399947..47399961,-!p3@SPI1!1.45!27.29!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.45!26.88!SPI1;;chr2:192015750..192015793,-!p2@STAT4!1.44!35.77!STAT4;;chr10:35484053..35484076,+!p1@CREM!1.43!63.27!CREM;;chr19:50922187..50922204,+!p1@SPIB!1.43!25.85!SPIB;;chr14:75745523..75745537,+!p1@FOS!1.42!2872.42!FOS;;chr3:71542615..71542644,-!p12@FOXP1!1.42!25.43!FOXP1;;chr2:231090471..231090504,+!p2@SP140!1.41!24.61!SP140;;chr7:115670804..115670825,-!p1@TFEC!1.40!24.19!TFEC;;chr19:16435625..16435682,+!p1@KLF2!1.36!680.89!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.35!21.50!TCF7;;chr19:12902289..12902307,+!p1@JUNB!1.33!4455.44!JUNB;;chr12:54778351..54778378,-!p6@ZNF385A!1.33!20.47!ZNF385A;;chr6:106546834..106546850,+!p4@PRDM1!1.33!20.26!PRDM1;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!500.79!TSC22D3;;chr2:61108695..61108753,+!p1@REL!1.31!130.47!REL;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.12!GATA3;;chrX:106960180..106960197,-!p2@TSC22D3!1.28!67.20!TSC22D3;;chr11:111249993..111250006,-!p1@POU2AF1!1.28!18.20!POU2AF1;;chr19:45971246..45971265,+!p1@FOSB!1.27!318.01!FOSB;;chr20:56195474..56195506,-!p1@ZBP1!1.27!17.78!ZBP1;;chr2:100759037..100759058,-!p2@AFF3!1.27!17.58!AFF3;;chr17:38020392..38020477,-!p1@IKZF3!1.27!17.58!IKZF3;;chr9:102584262..102584276,+!p1@NR4A3!1.26!37.84!NR4A3;;chr7:50343895..50343936,+!p5@IKZF1!1.26!17.37!IKZF1;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.37!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.25!22.54!THAP2;;chr11:47399996..47400014,-!p4@SPI1!1.25!16.95!SPI1;;chr21:36421535..36421610,-!p2@RUNX1!1.24!58.31!RUNX1;;chr5:88178983..88179012,-!p1@MEF2C!1.23!121.99!MEF2C;;chr4:109090075..109090095,-!p2@LEF1!1.23!15.92!LEF1;;chrX:106960221..106960236,-!p3@TSC22D3!1.22!43.21!TSC22D3;;chr3:71542684..71542720,-!p18@FOXP1!1.22!15.71!FOXP1;;chr2:70142232..70142251,+!p1@MXD1!1.21!83.74!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.21!15.09!CREM;;chr20:39317868..39317884,-!p1@MAFB!1.19!168.93!MAFB;;chr13:41593425..41593480,-!p1@ELF1!1.19!90.98!ELF1;;chr3:39195075..39195088,-!p1@CSRNP1!1.19!89.53!CSRNP1;;chr10:8096772..8096787,+!p2@GATA3!1.19!16.95!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.19!14.47!IKZF1;;chr4:106068026..106068084,+!p1@TET2!1.18!126.54!TET2;;chr1:25291475..25291511,-!p2@RUNX3!1.17!13.65!RUNX3;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.60!POU2F2;;chr14:35872962..35873025,-!p3@NFKBIA!1.15!33.08!NFKBIA;;chr6:91006575..91006602,-!p2@BACH2!1.15!19.64!BACH2;;chr6:144385698..144385742,-!p2@PLAGL1!1.15!15.92!PLAGL1;;chr12:54694758..54694805,-!p1@NFE2!1.15!15.92!NFE2;;chr9:102584241..102584261,+!p4@NR4A3!1.14!19.64!NR4A3;;chr17:37934365..37934387,-!p2@IKZF3!1.14!12.82!IKZF3;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.14!NR4A1;;chr11:128392273..128392308,-!p2@ETS1!1.13!52.52!ETS1;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.61!PLEK;;chr6:106546786..106546802,+!p6@PRDM1!1.13!12.41!PRDM1;;chr4:38665769..38665801,+!p2@KLF3!1.12!109.38!KLF3;;chr11:47400032..47400043,-!p5@SPI1!1.12!12.20!SPI1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.09!1188.09!ZFP36L2;;chr19:54041645..54041661,+!p5@ZNF331!1.09!11.17!ZNF331;;chr3:18487057..18487105,-!p4@SATB1!1.08!10.96!SATB1;;chr11:128563948..128564003,+!p1@FLI1!1.07!129.23!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.05!22.33!ZBTB25;;chr17:38020516..38020544,-!p5@IKZF3!1.05!10.34!IKZF3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!526.84!NFKBIZ;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.92!PRDM1;;chr14:35873947..35873965,-!p1@NFKBIA!1.03!620.30!NFKBIA;;chr6:15246261..15246312,+!p1@JARID2!1.03!239.85!JARID2;;chr3:71179699..71179744,-!p2@FOXP1!1.03!73.40!FOXP1;;chr7:149470641..149470694,-!p1@ZNF467!1.03!44.25!ZNF467;;chrX:101186981..101187030,-!p1@ZMAT1!1.03!32.05!ZMAT1;;chr6:15246200..15246214,+!p2@JARID2!1.03!27.29!JARID2;;chr7:104654690..104654704,+!p2@MLL5!1.03!19.64!MLL5;;chr7:137620684..137620711,-!p4@CREB3L2!1.03!9.72!CREB3L2;;chr7:104654718..104654741,+!p3@MLL5!1.02!13.85!MLL5;;chr17:38020557..38020572,-!p4@IKZF3!1.02!9.51!IKZF3;;chr2:157189617..157189667,-!p4@NR4A2!1.02!9.51!NR4A2;;chr3:128212033..128212051,-!p1@GATA2!1.02!9.51!GATA2;;chr4:109089901..109089930,-!p3@LEF1!1.02!9.51!LEF1;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.51!OLIG1;;chr2:61108650..61108687,+!p2@REL!1.01!45.70!REL;;chr9:3525727..3525828,-!p2@RFX3!1.01!23.78!RFX3;;chr17:38497662..38497713,+!p4@RARA!1.01!10.75!RARA;;chr2:231090344..231090361,-!p3@SP110!1.01!9.30!SP110;;chr2:61108878..61108891,+!p5@REL!1.01!9.30!REL;;chr7:137620650..137620677,-!p3@CREB3L2!1.01!9.30!CREB3L2;;chr11:47400045..47400060,-!p6@SPI1!1.01!9.30!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.00!191.47!NFKB1;;chr19:12721790..12721810,+!p2@ZNF791!1.00!25.23!ZNF791;;chr19:19729477..19729542,-!p1@PBX4!1.00!19.44!PBX4;;chr1:26697243..26697258,-!p1@ZNF683!1.00!8.89!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!0.99!303.12!ETS1;;chr12:72056773..72056796,+!p3@THAP2!0.99!11.58!THAP2;;chr6:44233252..44233296,-!p1@NFKBIE!0.98!85.81!NFKBIE;;chr13:74707894..74707947,-!p6@KLF12!0.98!9.51!KLF12;;chr21:36421147..36421193,-!p10@RUNX1!0.98!8.48!RUNX1;;chr14:65569101..65569119,-!p3@MAX!0.97!27.09!MAX;;chr19:45251395..45251432,+!p8@BCL3!0.97!8.27!BCL3;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.27!EOMES;;chr6:106534192..106534224,+!p1@PRDM1!0.96!23.36!PRDM1;;chr14:64971288..64971316,-!p2@ZBTB25!0.95!25.43!ZBTB25;;chr8:71316428..71316459,-!p2@NCOA2!0.95!13.44!NCOA2;;chr1:25256439..25256476,-!p3@RUNX3!0.95!7.86!RUNX3;;chr15:31619326..31619390,+!p2@KLF13!0.94!91.39!KLF13;;chr10:51572408..51572454,+!p3@NCOA4!0.94!47.14!NCOA4;;chr2:208394817..208394834,+!p3@CREB1!0.94!31.84!CREB1;;chr19:45252008..45252024,+!p2@BCL3!0.94!26.05!BCL3;;chr8:67525443..67525459,-!p2@MYBL1!0.94!11.79!MYBL1;;chr6:12009042..12009092,+!p6@HIVEP1!0.94!10.13!HIVEP1;;chr21:36421347..36421380,-!p8@RUNX1!0.94!7.65!RUNX1;;chr6:143266297..143266356,-!p1@HIVEP2!0.93!37.22!HIVEP2;;chr3:18480217..18480239,-!p3@SATB1!0.93!7.44!SATB1;;chr9:37034186..37034216,-!p2@PAX5!0.93!7.44!PAX5;;chr5:131826457..131826514,-!p1@IRF1!0.92!299.19!IRF1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.79!SP110;;chr9:110252035..110252057,-!p1@KLF4!0.92!122.41!KLF4;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.17!ZNF540;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.48!HOPX;;chr3:71542651..71542683,-!p22@FOXP1!0.92!7.24!FOXP1;;chr1:156470515..156470542,-!p2@MEF2D!0.91!39.08!MEF2D;;chr7:17338324..17338341,+!p3@AHR!0.91!24.81!AHR;;chr3:39195037..39195069,-!p2@CSRNP1!0.90!45.08!CSRNP1;;chr19:19779619..19779670,+!p1@ZNF101!0.90!20.06!ZNF101;;chr10:35416142..35416169,+!p3@CREM!0.90!19.02!CREM;;chr7:128577972..128578047,+!p1@IRF5!0.90!11.17!IRF5;;chr2:61108808..61108821,+!p3@REL!0.90!8.89!REL;;chr4:38665810..38665827,+!p1@KLF3!0.89!103.80!KLF3;;chr1:45805693..45805718,+!p3@TOE1!0.89!14.89!TOE1;;chr14:75988771..75988826,+!p1@BATF!0.89!9.10!BATF;;chr7:28725715..28725727,+!p3@CREB5!0.89!8.06!CREB5;;chr9:102584278..102584285,+!p5@NR4A3!0.89!6.82!NR4A3;;chr2:192015677..192015691,-!p3@STAT4!0.89!6.82!STAT4;;chr2:174828545..174828644,-!p1@SP3!0.88!105.45!SP3;;chr14:90085458..90085557,-!p1@FOXN3!0.88!72.78!FOXN3;;chr2:60780607..60780624,-!p2@BCL11A!0.88!21.09!BCL11A;;chr5:142782823..142782854,-!p3@NR3C1!0.88!9.72!NR3C1;;chr7:50348268..50348366,+!p4@IKZF1!0.88!6.62!IKZF1;;chr4:109089573..109089585,-!p8@LEF1!0.88!6.62!LEF1;;chr19:54041574..54041589,+!p6@ZNF331!0.88!6.62!ZNF331;;chr17:56565257..56565283,-!p2@HSF5!0.88!6.62!HSF5;;chr5:172483347..172483407,+!p1@C5orf41!0.87!51.69!CREBRF;;chr7:77428066..77428132,+!p2@PHTF2!0.87!44.04!PHTF2;;chr9:73028332..73028385,-!p3@KLF9!0.87!23.16!KLF9;;chr6:12008986..12009016,+!p3@HIVEP1!0.87!21.09!HIVEP1;;chr19:36391434..36391450,-!p1@NFKBID!0.87!13.03!NFKBID;;chr8:123793988..123794016,+!p1@ZHX2!0.87!11.79!ZHX2;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.41!LEF1;;chr14:64971461..64971542,+!p1@ZBTB1!0.86!134.19!ZBTB1;;chr2:97202480..97202499,+!p1@ARID5A!0.86!66.99!ARID5A;;chr19:12273866..12273935,+!p1@ZNF136!0.86!59.34!ZNF136;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.53!NFKB2;;chr3:23986824..23986848,+!p2@NR1D2!0.86!37.22!NR1D2;;chr3:18466787..18466839,-!p1@SATB1!0.86!29.77!SATB1;;chr16:3313791..3313834,+!p2@ZNF263!0.86!14.47!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.86!9.10!NFKBIZ;;chr8:81397876..81397898,+!p5@ZBTB10!0.86!7.44!ZBTB10;;chr7:50344144..50344157,+!p6@IKZF1!0.86!6.20!IKZF1;;chr7:64838754..64838778,+!p1@ZNF92!0.85!61.41!ZNF92;;chr9:117160738..117160782,-!p2@AKNA!0.85!26.67!AKNA;;chr10:94449703..94449718,+!p1@HHEX!0.85!24.81!HHEX;;chr3:114866084..114866118,-!p2@ZBTB20!0.85!23.16!ZBTB20;;chr15:31619407..31619419,+!p9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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.27!186.50!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.25!175.75!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.05!110.62!IRF8;;chr5:133451294..133451310,+!p2@TCF7!1.99!95.94!TCF7;;chr12:54778471..54778528,-!p1@ZNF385A!1.92!81.67!ZNF385A;;chr1:25256756..25256774,-!p1@RUNX3!1.89!140.60!RUNX3;;chr3:63953435..63953499,+!p1@ATXN7!1.84!68.03!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.82!65.34!LEF1;;chr19:54041669..54041697,+!p2@ZNF331!1.80!62.44!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.69!IKZF1;;chr19:54058073..54058088,+!p1@ZNF331!1.75!55.83!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.73!71.54!STAT4;;chr6:106546808..106546833,+!p3@PRDM1!1.69!59.34!PRDM1;;chr5:133450365..133450444,+!p1@TCF7!1.67!202.01!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.64!42.59!SP140;;chr2:157189180..157189290,-!p1@NR4A2!1.63!209.87!NR4A2;;chr6:91006518..91006570,-!p1@BACH2!1.61!88.08!BACH2;;chr3:71355163..71355209,-!p5@FOXP1!1.61!54.38!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.61!40.11!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.58!97.59!AKNA;;chr6:391743..391759,+!p1@IRF4!1.58!36.80!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.56!447.86!ZEB2;;chr3:18486354..18486377,-!p2@SATB1!1.52!40.11!SATB1;;chr2:100759010..100759035,-!p1@AFF3!1.49!29.57!AFF3;;chr20:50159198..50159299,-!p1@NFATC2!1.48!42.39!NFATC2;;chr17:45810594..45810608,+!p1@TBX21!1.46!28.12!TBX21;;chr15:60884706..60884743,-!p1@RORA!1.45!135.64!RORA;;chr11:47399947..47399961,-!p3@SPI1!1.45!27.29!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.45!26.88!SPI1;;chr2:192015750..192015793,-!p2@STAT4!1.44!35.77!STAT4;;chr10:35484053..35484076,+!p1@CREM!1.43!63.27!CREM;;chr19:50922187..50922204,+!p1@SPIB!1.43!25.85!SPIB;;chr14:75745523..75745537,+!p1@FOS!1.42!2872.42!FOS;;chr3:71542615..71542644,-!p12@FOXP1!1.42!25.43!FOXP1;;chr2:231090471..231090504,+!p2@SP140!1.41!24.61!SP140;;chr7:115670804..115670825,-!p1@TFEC!1.40!24.19!TFEC;;chr19:16435625..16435682,+!p1@KLF2!1.36!680.89!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.35!21.50!TCF7;;chr19:12902289..12902307,+!p1@JUNB!1.33!4455.44!JUNB;;chr12:54778351..54778378,-!p6@ZNF385A!1.33!20.47!ZNF385A;;chr6:106546834..106546850,+!p4@PRDM1!1.33!20.26!PRDM1;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!500.79!TSC22D3;;chr2:61108695..61108753,+!p1@REL!1.31!130.47!REL;;chr10:8096631..8096660,+!p1@GATA3!1.29!22.12!GATA3;;chrX:106960180..106960197,-!p2@TSC22D3!1.28!67.20!TSC22D3;;chr11:111249993..111250006,-!p1@POU2AF1!1.28!18.20!POU2AF1;;chr19:45971246..45971265,+!p1@FOSB!1.27!318.01!FOSB;;chr20:56195474..56195506,-!p1@ZBP1!1.27!17.78!ZBP1;;chr2:100759037..100759058,-!p2@AFF3!1.27!17.58!AFF3;;chr17:38020392..38020477,-!p1@IKZF3!1.27!17.58!IKZF3;;chr9:102584262..102584276,+!p1@NR4A3!1.26!37.84!NR4A3;;chr7:50343895..50343936,+!p5@IKZF1!1.26!17.37!IKZF1;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.37!ZEB2;;chr12:72056800..72056834,+!p1@THAP2!1.25!22.54!THAP2;;chr11:47399996..47400014,-!p4@SPI1!1.25!16.95!SPI1;;chr21:36421535..36421610,-!p2@RUNX1!1.24!58.31!RUNX1;;chr5:88178983..88179012,-!p1@MEF2C!1.23!121.99!MEF2C;;chr4:109090075..109090095,-!p2@LEF1!1.23!15.92!LEF1;;chrX:106960221..106960236,-!p3@TSC22D3!1.22!43.21!TSC22D3;;chr3:71542684..71542720,-!p18@FOXP1!1.22!15.71!FOXP1;;chr2:70142232..70142251,+!p1@MXD1!1.21!83.74!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.21!15.09!CREM;;chr20:39317868..39317884,-!p1@MAFB!1.19!168.93!MAFB;;chr13:41593425..41593480,-!p1@ELF1!1.19!90.98!ELF1;;chr3:39195075..39195088,-!p1@CSRNP1!1.19!89.53!CSRNP1;;chr10:8096772..8096787,+!p2@GATA3!1.19!16.95!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.19!14.47!IKZF1;;chr4:106068026..106068084,+!p1@TET2!1.18!126.54!TET2;;chr1:25291475..25291511,-!p2@RUNX3!1.17!13.65!RUNX3;;chr19:42636586..42636607,-!p1@POU2F2!1.15!36.60!POU2F2;;chr14:35872962..35873025,-!p3@NFKBIA!1.15!33.08!NFKBIA;;chr6:91006575..91006602,-!p2@BACH2!1.15!19.64!BACH2;;chr6:144385698..144385742,-!p2@PLAGL1!1.15!15.92!PLAGL1;;chr12:54694758..54694805,-!p1@NFE2!1.15!15.92!NFE2;;chr9:102584241..102584261,+!p4@NR4A3!1.14!19.64!NR4A3;;chr17:37934365..37934387,-!p2@IKZF3!1.14!12.82!IKZF3;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.14!NR4A1;;chr11:128392273..128392308,-!p2@ETS1!1.13!52.52!ETS1;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.61!PLEK;;chr6:106546786..106546802,+!p6@PRDM1!1.13!12.41!PRDM1;;chr4:38665769..38665801,+!p2@KLF3!1.12!109.38!KLF3;;chr11:47400032..47400043,-!p5@SPI1!1.12!12.20!SPI1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.09!1188.09!ZFP36L2;;chr19:54041645..54041661,+!p5@ZNF331!1.09!11.17!ZNF331;;chr3:18487057..18487105,-!p4@SATB1!1.08!10.96!SATB1;;chr11:128563948..128564003,+!p1@FLI1!1.07!129.23!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.05!22.33!ZBTB25;;chr17:38020516..38020544,-!p5@IKZF3!1.05!10.34!IKZF3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!526.84!NFKBIZ;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.92!PRDM1;;chr14:35873947..35873965,-!p1@NFKBIA!1.03!620.30!NFKBIA;;chr6:15246261..15246312,+!p1@JARID2!1.03!239.85!JARID2;;chr3:71179699..71179744,-!p2@FOXP1!1.03!73.40!FOXP1;;chr7:149470641..149470694,-!p1@ZNF467!1.03!44.25!ZNF467;;chrX:101186981..101187030,-!p1@ZMAT1!1.03!32.05!ZMAT1;;chr6:15246200..15246214,+!p2@JARID2!1.03!27.29!JARID2;;chr7:104654690..104654704,+!p2@MLL5!1.03!19.64!MLL5;;chr7:137620684..137620711,-!p4@CREB3L2!1.03!9.72!CREB3L2;;chr7:104654718..104654741,+!p3@MLL5!1.02!13.85!MLL5;;chr17:38020557..38020572,-!p4@IKZF3!1.02!9.51!IKZF3;;chr2:157189617..157189667,-!p4@NR4A2!1.02!9.51!NR4A2;;chr3:128212033..128212051,-!p1@GATA2!1.02!9.51!GATA2;;chr4:109089901..109089930,-!p3@LEF1!1.02!9.51!LEF1;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.51!OLIG1;;chr2:61108650..61108687,+!p2@REL!1.01!45.70!REL;;chr9:3525727..3525828,-!p2@RFX3!1.01!23.78!RFX3;;chr17:38497662..38497713,+!p4@RARA!1.01!10.75!RARA;;chr2:231090344..231090361,-!p3@SP110!1.01!9.30!SP110;;chr2:61108878..61108891,+!p5@REL!1.01!9.30!REL;;chr7:137620650..137620677,-!p3@CREB3L2!1.01!9.30!CREB3L2;;chr11:47400045..47400060,-!p6@SPI1!1.01!9.30!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.00!191.47!NFKB1;;chr19:12721790..12721810,+!p2@ZNF791!1.00!25.23!ZNF791;;chr19:19729477..19729542,-!p1@PBX4!1.00!19.44!PBX4;;chr1:26697243..26697258,-!p1@ZNF683!1.00!8.89!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!0.99!303.12!ETS1;;chr12:72056773..72056796,+!p3@THAP2!0.99!11.58!THAP2;;chr6:44233252..44233296,-!p1@NFKBIE!0.98!85.81!NFKBIE;;chr13:74707894..74707947,-!p6@KLF12!0.98!9.51!KLF12;;chr21:36421147..36421193,-!p10@RUNX1!0.98!8.48!RUNX1;;chr14:65569101..65569119,-!p3@MAX!0.97!27.09!MAX;;chr19:45251395..45251432,+!p8@BCL3!0.97!8.27!BCL3;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.27!EOMES;;chr6:106534192..106534224,+!p1@PRDM1!0.96!23.36!PRDM1;;chr14:64971288..64971316,-!p2@ZBTB25!0.95!25.43!ZBTB25;;chr8:71316428..71316459,-!p2@NCOA2!0.95!13.44!NCOA2;;chr1:25256439..25256476,-!p3@RUNX3!0.95!7.86!RUNX3;;chr15:31619326..31619390,+!p2@KLF13!0.94!91.39!KLF13;;chr10:51572408..51572454,+!p3@NCOA4!0.94!47.14!NCOA4;;chr2:208394817..208394834,+!p3@CREB1!0.94!31.84!CREB1;;chr19:45252008..45252024,+!p2@BCL3!0.94!26.05!BCL3;;chr8:67525443..67525459,-!p2@MYBL1!0.94!11.79!MYBL1;;chr6:12009042..12009092,+!p6@HIVEP1!0.94!10.13!HIVEP1;;chr21:36421347..36421380,-!p8@RUNX1!0.94!7.65!RUNX1;;chr6:143266297..143266356,-!p1@HIVEP2!0.93!37.22!HIVEP2;;chr3:18480217..18480239,-!p3@SATB1!0.93!7.44!SATB1;;chr9:37034186..37034216,-!p2@PAX5!0.93!7.44!PAX5;;chr5:131826457..131826514,-!p1@IRF1!0.92!299.19!IRF1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.79!SP110;;chr9:110252035..110252057,-!p1@KLF4!0.92!122.41!KLF4;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.17!ZNF540;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.48!HOPX;;chr3:71542651..71542683,-!p22@FOXP1!0.92!7.24!FOXP1;;chr1:156470515..156470542,-!p2@MEF2D!0.91!39.08!MEF2D;;chr7:17338324..17338341,+!p3@AHR!0.91!24.81!AHR;;chr3:39195037..39195069,-!p2@CSRNP1!0.90!45.08!CSRNP1;;chr19:19779619..19779670,+!p1@ZNF101!0.90!20.06!ZNF101;;chr10:35416142..35416169,+!p3@CREM!0.90!19.02!CREM;;chr7:128577972..128578047,+!p1@IRF5!0.90!11.17!IRF5;;chr2:61108808..61108821,+!p3@REL!0.90!8.89!REL;;chr4:38665810..38665827,+!p1@KLF3!0.89!103.80!KLF3;;chr1:45805693..45805718,+!p3@TOE1!0.89!14.89!TOE1;;chr14:75988771..75988826,+!p1@BATF!0.89!9.10!BATF;;chr7:28725715..28725727,+!p3@CREB5!0.89!8.06!CREB5;;chr9:102584278..102584285,+!p5@NR4A3!0.89!6.82!NR4A3;;chr2:192015677..192015691,-!p3@STAT4!0.89!6.82!STAT4;;chr2:174828545..174828644,-!p1@SP3!0.88!105.45!SP3;;chr14:90085458..90085557,-!p1@FOXN3!0.88!72.78!FOXN3;;chr2:60780607..60780624,-!p2@BCL11A!0.88!21.09!BCL11A;;chr5:142782823..142782854,-!p3@NR3C1!0.88!9.72!NR3C1;;chr7:50348268..50348366,+!p4@IKZF1!0.88!6.62!IKZF1;;chr4:109089573..109089585,-!p8@LEF1!0.88!6.62!LEF1;;chr19:54041574..54041589,+!p6@ZNF331!0.88!6.62!ZNF331;;chr17:56565257..56565283,-!p2@HSF5!0.88!6.62!HSF5;;chr5:172483347..172483407,+!p1@C5orf41!0.87!51.69!CREBRF;;chr7:77428066..77428132,+!p2@PHTF2!0.87!44.04!PHTF2;;chr9:73028332..73028385,-!p3@KLF9!0.87!23.16!KLF9;;chr6:12008986..12009016,+!p3@HIVEP1!0.87!21.09!HIVEP1;;chr19:36391434..36391450,-!p1@NFKBID!0.87!13.03!NFKBID;;chr8:123793988..123794016,+!p1@ZHX2!0.87!11.79!ZHX2;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.41!LEF1;;chr14:64971461..64971542,+!p1@ZBTB1!0.86!134.19!ZBTB1;;chr2:97202480..97202499,+!p1@ARID5A!0.86!66.99!ARID5A;;chr19:12273866..12273935,+!p1@ZNF136!0.86!59.34!ZNF136;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.53!NFKB2;;chr3:23986824..23986848,+!p2@NR1D2!0.86!37.22!NR1D2;;chr3:18466787..18466839,-!p1@SATB1!0.86!29.77!SATB1;;chr16:3313791..3313834,+!p2@ZNF263!0.86!14.47!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.86!9.10!NFKBIZ;;chr8:81397876..81397898,+!p5@ZBTB10!0.86!7.44!ZBTB10;;chr7:50344144..50344157,+!p6@IKZF1!0.86!6.20!IKZF1;;chr7:64838754..64838778,+!p1@ZNF92!0.85!61.41!ZNF92;;chr9:117160738..117160782,-!p2@AKNA!0.85!26.67!AKNA;;chr10:94449703..94449718,+!p1@HHEX!0.85!24.81!HHEX;;chr3:114866084..114866118,-!p2@ZBTB20!0.85!23.16!ZBTB20;;chr15:31619407..31619419,+!p9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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000842;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor1.CNhs10860.11231-116C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor1.CNhs10860.11231-116C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor1.CNhs10860.11231-116C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor1.CNhs10860.11231-116C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor1.CNhs10860.11231-116C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11231-116C7 | |id=FF:11231-116C7 | ||
|is_a=EFO:0002091;;FF:0000135 | |is_a=EFO:0002091;;FF:0000135 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10860 | |library_id=CNhs10860 | ||
| | |library_id_phase_based=2:CNhs10860 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11231 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CCGTCC.11231 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11231 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CCGTCC.11231 | |||
|name=Peripheral Blood Mononuclear Cells, donor1 | |name=Peripheral Blood Mononuclear Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10860,LSID702,release008,COMPLETED | |profile_hcage=CNhs10860,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 66: | Line 82: | ||
|rna_tube_id=116C7 | |rna_tube_id=116C7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.CCGTCC | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 89: | Line 106: | ||
|top_motifs=RUNX1..3:2.89148452218;ETS1,2:2.79949721398;PAX3,7:2.68338017176;FOXO1,3,4:2.44970482561;DMAP1_NCOR{1,2}_SMARC:2.4251704124;SPIB:2.36232536329;ELF1,2,4:2.32376066726;SPI1:2.31839869863;RORA:2.13302212782;FOX{D1,D2}:2.11075058218;ATF5_CREB3:2.080630817;PAX2:2.07562712027;CREB1:1.84110710093;FOXN1:1.81981076555;TGIF1:1.79898868722;NFIL3:1.66016283451;BPTF:1.65072520851;ATF4:1.61691392672;HMX1:1.61610127249;IRF1,2:1.56904589594;TLX2:1.56345994376;MAFB:1.52831330843;T:1.50140117616;NFKB1_REL_RELA:1.43787940179;EP300:1.402037568;FOX{F1,F2,J1}:1.36238857769;CDX1,2,4:1.32645306267;HIF1A:1.25729283587;CEBPA,B_DDIT3:1.20125572794;RFX2..5_RFXANK_RFXAP:1.17265267749;PITX1..3:1.15782606979;NANOG{mouse}:1.15518009476;IRF7:1.10399135124;HMGA1,2:1.0344710689;HOXA9_MEIS1:0.94614380415;JUN:0.931221802792;SREBF1,2:0.916189788138;FOXP1:0.911381275685;IKZF2:0.894415296146;RXRA_VDR{dimer}:0.863932225327;ATF2:0.861210925967;SMAD1..7,9:0.828647715354;NFATC1..3:0.808594972933;BREu{core}:0.769299317911;FOSL2:0.755521190347;HBP1_HMGB_SSRP1_UBTF:0.650052836582;FOXP3:0.578475053957;NKX2-1,4:0.556897421089;PAX6:0.540583288751;FOXA2:0.517981718176;ZBTB16:0.455406493043;GATA6:0.442764967928;BACH2:0.437197949769;HLF:0.432497927317;FOS_FOS{B,L1}_JUN{B,D}:0.416103598292;NFE2:0.387199869465;SOX2:0.37782130148;MYFfamily:0.286084353701;STAT2,4,6:0.265189365078;POU2F1..3:0.255790377641;ATF6:0.254619426988;EGR1..3:0.244910337439;POU5F1:0.234376737874;FOXD3:0.225572270598;MYB:0.215012330139;TBX4,5:0.186811731474;FOX{I1,J2}:0.150107989019;NFE2L2:0.136750817078;RREB1:0.133702653023;GLI1..3:0.105671715118;NANOG:0.101096348861;PDX1:0.0733251409235;TFAP4:0.0636045343681;ZEB1:0.00732428009426;NFE2L1:-0.00817392520212;TOPORS:-0.015507152142;STAT5{A,B}:-0.079286188163;LEF1_TCF7_TCF7L1,2:-0.0796570747662;MYOD1:-0.100325265111;AHR_ARNT_ARNT2:-0.108497708379;SPZ1:-0.140445104252;ESR1:-0.165802663625;MTE{core}:-0.205988189666;PAX4:-0.233070228651;NHLH1,2:-0.2355861267;SNAI1..3:-0.247447849251;MEF2{A,B,C,D}:-0.250873228609;MZF1:-0.26153726085;AIRE:-0.281177211244;ALX1:-0.305225741668;STAT1,3:-0.309086690409;ZFP161:-0.321714564112;NFIX:-0.330406733395;PAX5:-0.332244838415;GATA4:-0.346371669125;GCM1,2:-0.353903362872;NKX3-1:-0.360173654677;NKX2-2,8:-0.386756926392;HES1:-0.408956816402;NKX6-1,2:-0.418160339934;XBP1:-0.425702082059;SP1:-0.439339776902;CUX2:-0.452877016876;MED-1{core}:-0.455562677749;SRF:-0.463651719604;HNF4A_NR2F1,2:-0.469158017634;TAL1_TCF{3,4,12}:-0.471861581023;RBPJ:-0.477793733112;PATZ1:-0.482382101739;EVI1:-0.523007589048;ALX4:-0.523010002011;CRX:-0.523184513432;NR5A1,2:-0.527328199402;PRDM1:-0.528384989683;ELK1,4_GABP{A,B1}:-0.533243314592;ZNF148:-0.537627082435;DBP:-0.545900542048;OCT4_SOX2{dimer}:-0.565281010613;TFCP2:-0.578737326096;NR1H4:-0.586565318982;RFX1:-0.58778598405;PRRX1,2:-0.627834871571;ADNP_IRX_SIX_ZHX:-0.633628180694;MTF1:-0.642976896153;E2F1..5:-0.656923800506;FOXL1:-0.671665366756;SOX{8,9,10}:-0.678395267158;HNF1A:-0.681271211851;LMO2:-0.703432540019;SOX5:-0.715734504685;NRF1:-0.722331551315;PAX8:-0.72985668598;REST:-0.738394558786;TFDP1:-0.760570769346;NFY{A,B,C}:-0.760800938069;VSX1,2:-0.771428287954;TFAP2B:-0.785409288022;PBX1:-0.789190265909;ZNF238:-0.802702792647;AR:-0.863700946917;TFAP2{A,C}:-0.909618893424;ZNF384:-0.919069465799;ZNF423:-0.924719635119;MAZ:-0.944978995889;ESRRA:-0.951926052683;HOX{A6,A7,B6,B7}:-1.01066070193;HIC1:-1.02678925069;XCPE1{core}:-1.0268816972;FOXM1:-1.03087703837;POU1F1:-1.06777263588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07639939971;FOXQ1:-1.12269207697;NR3C1:-1.12867027343;ZBTB6:-1.13357493074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16022686625;HSF1,2:-1.16896445336;EN1,2:-1.17051022502;NR6A1:-1.20226547647;ZNF143:-1.23010594512;RXR{A,B,G}:-1.24050171012;NKX2-3_NKX2-5:-1.24503402775;YY1:-1.29056258044;KLF4:-1.32746142836;PPARG:-1.33191748222;CDC5L:-1.36383203755;bHLH_family:-1.39574895513;GTF2I:-1.40070633871;TBP:-1.42278910778;GFI1:-1.47112053064;GZF1:-1.50699948752;NKX3-2:-1.51151676493;TEF:-1.51499230149;TP53:-1.53005079661;ZIC1..3:-1.5338037283;TLX1..3_NFIC{dimer}:-1.53574367127;SOX17:-1.55300068416;GFI1B:-1.57406152105;HAND1,2:-1.61962445991;TEAD1:-1.63295342186;MYBL2:-1.68198576212;LHX3,4:-1.69131942309;POU6F1:-1.75082196742;GTF2A1,2:-1.75217243382;EBF1:-1.75908013574;HOX{A5,B5}:-1.76091655595;ARID5B:-1.84278779079;POU3F1..4:-1.88894039345;UFEwm:-1.95611358594;PAX1,9:-2.07479632185;ONECUT1,2:-2.1704735322;HOX{A4,D4}:-2.28230198536;IKZF1:-2.81397692667 | |top_motifs=RUNX1..3:2.89148452218;ETS1,2:2.79949721398;PAX3,7:2.68338017176;FOXO1,3,4:2.44970482561;DMAP1_NCOR{1,2}_SMARC:2.4251704124;SPIB:2.36232536329;ELF1,2,4:2.32376066726;SPI1:2.31839869863;RORA:2.13302212782;FOX{D1,D2}:2.11075058218;ATF5_CREB3:2.080630817;PAX2:2.07562712027;CREB1:1.84110710093;FOXN1:1.81981076555;TGIF1:1.79898868722;NFIL3:1.66016283451;BPTF:1.65072520851;ATF4:1.61691392672;HMX1:1.61610127249;IRF1,2:1.56904589594;TLX2:1.56345994376;MAFB:1.52831330843;T:1.50140117616;NFKB1_REL_RELA:1.43787940179;EP300:1.402037568;FOX{F1,F2,J1}:1.36238857769;CDX1,2,4:1.32645306267;HIF1A:1.25729283587;CEBPA,B_DDIT3:1.20125572794;RFX2..5_RFXANK_RFXAP:1.17265267749;PITX1..3:1.15782606979;NANOG{mouse}:1.15518009476;IRF7:1.10399135124;HMGA1,2:1.0344710689;HOXA9_MEIS1:0.94614380415;JUN:0.931221802792;SREBF1,2:0.916189788138;FOXP1:0.911381275685;IKZF2:0.894415296146;RXRA_VDR{dimer}:0.863932225327;ATF2:0.861210925967;SMAD1..7,9:0.828647715354;NFATC1..3:0.808594972933;BREu{core}:0.769299317911;FOSL2:0.755521190347;HBP1_HMGB_SSRP1_UBTF:0.650052836582;FOXP3:0.578475053957;NKX2-1,4:0.556897421089;PAX6:0.540583288751;FOXA2:0.517981718176;ZBTB16:0.455406493043;GATA6:0.442764967928;BACH2:0.437197949769;HLF:0.432497927317;FOS_FOS{B,L1}_JUN{B,D}:0.416103598292;NFE2:0.387199869465;SOX2:0.37782130148;MYFfamily:0.286084353701;STAT2,4,6:0.265189365078;POU2F1..3:0.255790377641;ATF6:0.254619426988;EGR1..3:0.244910337439;POU5F1:0.234376737874;FOXD3:0.225572270598;MYB:0.215012330139;TBX4,5:0.186811731474;FOX{I1,J2}:0.150107989019;NFE2L2:0.136750817078;RREB1:0.133702653023;GLI1..3:0.105671715118;NANOG:0.101096348861;PDX1:0.0733251409235;TFAP4:0.0636045343681;ZEB1:0.00732428009426;NFE2L1:-0.00817392520212;TOPORS:-0.015507152142;STAT5{A,B}:-0.079286188163;LEF1_TCF7_TCF7L1,2:-0.0796570747662;MYOD1:-0.100325265111;AHR_ARNT_ARNT2:-0.108497708379;SPZ1:-0.140445104252;ESR1:-0.165802663625;MTE{core}:-0.205988189666;PAX4:-0.233070228651;NHLH1,2:-0.2355861267;SNAI1..3:-0.247447849251;MEF2{A,B,C,D}:-0.250873228609;MZF1:-0.26153726085;AIRE:-0.281177211244;ALX1:-0.305225741668;STAT1,3:-0.309086690409;ZFP161:-0.321714564112;NFIX:-0.330406733395;PAX5:-0.332244838415;GATA4:-0.346371669125;GCM1,2:-0.353903362872;NKX3-1:-0.360173654677;NKX2-2,8:-0.386756926392;HES1:-0.408956816402;NKX6-1,2:-0.418160339934;XBP1:-0.425702082059;SP1:-0.439339776902;CUX2:-0.452877016876;MED-1{core}:-0.455562677749;SRF:-0.463651719604;HNF4A_NR2F1,2:-0.469158017634;TAL1_TCF{3,4,12}:-0.471861581023;RBPJ:-0.477793733112;PATZ1:-0.482382101739;EVI1:-0.523007589048;ALX4:-0.523010002011;CRX:-0.523184513432;NR5A1,2:-0.527328199402;PRDM1:-0.528384989683;ELK1,4_GABP{A,B1}:-0.533243314592;ZNF148:-0.537627082435;DBP:-0.545900542048;OCT4_SOX2{dimer}:-0.565281010613;TFCP2:-0.578737326096;NR1H4:-0.586565318982;RFX1:-0.58778598405;PRRX1,2:-0.627834871571;ADNP_IRX_SIX_ZHX:-0.633628180694;MTF1:-0.642976896153;E2F1..5:-0.656923800506;FOXL1:-0.671665366756;SOX{8,9,10}:-0.678395267158;HNF1A:-0.681271211851;LMO2:-0.703432540019;SOX5:-0.715734504685;NRF1:-0.722331551315;PAX8:-0.72985668598;REST:-0.738394558786;TFDP1:-0.760570769346;NFY{A,B,C}:-0.760800938069;VSX1,2:-0.771428287954;TFAP2B:-0.785409288022;PBX1:-0.789190265909;ZNF238:-0.802702792647;AR:-0.863700946917;TFAP2{A,C}:-0.909618893424;ZNF384:-0.919069465799;ZNF423:-0.924719635119;MAZ:-0.944978995889;ESRRA:-0.951926052683;HOX{A6,A7,B6,B7}:-1.01066070193;HIC1:-1.02678925069;XCPE1{core}:-1.0268816972;FOXM1:-1.03087703837;POU1F1:-1.06777263588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07639939971;FOXQ1:-1.12269207697;NR3C1:-1.12867027343;ZBTB6:-1.13357493074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16022686625;HSF1,2:-1.16896445336;EN1,2:-1.17051022502;NR6A1:-1.20226547647;ZNF143:-1.23010594512;RXR{A,B,G}:-1.24050171012;NKX2-3_NKX2-5:-1.24503402775;YY1:-1.29056258044;KLF4:-1.32746142836;PPARG:-1.33191748222;CDC5L:-1.36383203755;bHLH_family:-1.39574895513;GTF2I:-1.40070633871;TBP:-1.42278910778;GFI1:-1.47112053064;GZF1:-1.50699948752;NKX3-2:-1.51151676493;TEF:-1.51499230149;TP53:-1.53005079661;ZIC1..3:-1.5338037283;TLX1..3_NFIC{dimer}:-1.53574367127;SOX17:-1.55300068416;GFI1B:-1.57406152105;HAND1,2:-1.61962445991;TEAD1:-1.63295342186;MYBL2:-1.68198576212;LHX3,4:-1.69131942309;POU6F1:-1.75082196742;GTF2A1,2:-1.75217243382;EBF1:-1.75908013574;HOX{A5,B5}:-1.76091655595;ARID5B:-1.84278779079;POU3F1..4:-1.88894039345;UFEwm:-1.95611358594;PAX1,9:-2.07479632185;ONECUT1,2:-2.1704735322;HOX{A4,D4}:-2.28230198536;IKZF1:-2.81397692667 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11231-116C7;search_select_hide=table117:FF:11231-116C7 | |||
}} | }} |
Latest revision as of 16:26, 3 June 2020
Name: | Peripheral Blood Mononuclear Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10860 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10860
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10860
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.443 |
10 | 10 | 0.0148 |
100 | 100 | 0.443 |
101 | 101 | 0.428 |
102 | 102 | 0.711 |
103 | 103 | 0.6 |
104 | 104 | 0.592 |
105 | 105 | 0.167 |
106 | 106 | 0.00995 |
107 | 107 | 0.558 |
108 | 108 | 0.475 |
109 | 109 | 0.423 |
11 | 11 | 0.378 |
110 | 110 | 0.884 |
111 | 111 | 0.14 |
112 | 112 | 0.613 |
113 | 113 | 0.0422 |
114 | 114 | 0.205 |
115 | 115 | 0.152 |
116 | 116 | 0.321 |
117 | 117 | 0.0177 |
118 | 118 | 0.326 |
119 | 119 | 0.974 |
12 | 12 | 0.399 |
120 | 120 | 0.322 |
121 | 121 | 0.472 |
122 | 122 | 0.359 |
123 | 123 | 0.00346 |
124 | 124 | 0.364 |
125 | 125 | 0.796 |
126 | 126 | 0.206 |
127 | 127 | 0.413 |
128 | 128 | 0.234 |
129 | 129 | 0.752 |
13 | 13 | 0.693 |
130 | 130 | 0.244 |
131 | 131 | 0.683 |
132 | 132 | 0.108 |
133 | 133 | 0.474 |
134 | 134 | 0.879 |
135 | 135 | 0.31 |
136 | 136 | 0.635 |
137 | 137 | 5.08791e-4 |
138 | 138 | 0.113 |
139 | 139 | 0.0118 |
14 | 14 | 0.28 |
140 | 140 | 0.424 |
141 | 141 | 0.511 |
142 | 142 | 0.941 |
143 | 143 | 0.00588 |
144 | 144 | 0.75 |
145 | 145 | 0.986 |
146 | 146 | 0.816 |
147 | 147 | 0.0353 |
148 | 148 | 0.195 |
149 | 149 | 0.647 |
15 | 15 | 0.116 |
150 | 150 | 0.907 |
151 | 151 | 0.216 |
152 | 152 | 0.955 |
153 | 153 | 0.706 |
154 | 154 | 0.291 |
155 | 155 | 0.0682 |
156 | 156 | 0.561 |
157 | 157 | 0.899 |
158 | 158 | 0.00548 |
159 | 159 | 0.754 |
16 | 16 | 0.859 |
160 | 160 | 0.479 |
161 | 161 | 0.78 |
162 | 162 | 0.0556 |
163 | 163 | 0.776 |
164 | 164 | 0.252 |
165 | 165 | 0.229 |
166 | 166 | 0.613 |
167 | 167 | 0.453 |
168 | 168 | 0.154 |
169 | 169 | 0.952 |
17 | 17 | 0.765 |
18 | 18 | 0.566 |
19 | 19 | 0.399 |
2 | 2 | 0.846 |
20 | 20 | 0.748 |
21 | 21 | 0.75 |
22 | 22 | 0.948 |
23 | 23 | 0.211 |
24 | 24 | 0.432 |
25 | 25 | 0.0972 |
26 | 26 | 0.643 |
27 | 27 | 0.556 |
28 | 28 | 0.359 |
29 | 29 | 0.233 |
3 | 3 | 0.32 |
30 | 30 | 0.227 |
31 | 31 | 0.997 |
32 | 32 | 0.0196 |
33 | 33 | 0.454 |
34 | 34 | 0.886 |
35 | 35 | 0.153 |
36 | 36 | 0.208 |
37 | 37 | 0.359 |
38 | 38 | 0.675 |
39 | 39 | 0.662 |
4 | 4 | 0.804 |
40 | 40 | 0.871 |
41 | 41 | 0.034 |
42 | 42 | 0.278 |
43 | 43 | 0.117 |
44 | 44 | 0.593 |
45 | 45 | 0.739 |
46 | 46 | 0.451 |
47 | 47 | 0.679 |
48 | 48 | 0.646 |
49 | 49 | 0.107 |
5 | 5 | 0.211 |
50 | 50 | 0.656 |
51 | 51 | 0.541 |
52 | 52 | 0.757 |
53 | 53 | 0.103 |
54 | 54 | 0.627 |
55 | 55 | 0.824 |
56 | 56 | 0.849 |
57 | 57 | 0.94 |
58 | 58 | 0.0493 |
59 | 59 | 0.962 |
6 | 6 | 0.845 |
60 | 60 | 0.138 |
61 | 61 | 0.133 |
62 | 62 | 0.033 |
63 | 63 | 0.945 |
64 | 64 | 0.516 |
65 | 65 | 0.569 |
66 | 66 | 0.214 |
67 | 67 | 0.818 |
68 | 68 | 0.329 |
69 | 69 | 0.734 |
7 | 7 | 0.333 |
70 | 70 | 0.0782 |
71 | 71 | 0.0982 |
72 | 72 | 0.232 |
73 | 73 | 0.671 |
74 | 74 | 0.159 |
75 | 75 | 0.0836 |
76 | 76 | 0.119 |
77 | 77 | 0.169 |
78 | 78 | 0.341 |
79 | 79 | 0.857 |
8 | 8 | 0.662 |
80 | 80 | 0.0102 |
81 | 81 | 0.436 |
82 | 82 | 0.223 |
83 | 83 | 0.913 |
84 | 84 | 0.252 |
85 | 85 | 0.181 |
86 | 86 | 0.0469 |
87 | 87 | 0.812 |
88 | 88 | 0.604 |
89 | 89 | 0.215 |
9 | 9 | 0.447 |
90 | 90 | 0.0291 |
91 | 91 | 0.431 |
92 | 92 | 0.288 |
93 | 93 | 0.572 |
94 | 94 | 0.122 |
95 | 95 | 0.37 |
96 | 96 | 0.86 |
97 | 97 | 0.733 |
98 | 98 | 0.302 |
99 | 99 | 3.62659e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10860
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000135 human peripheral blood mononuclear cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000226 (single nucleate cell)
0000080 (circulating cell)
0000842 (mononuclear cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000178 (blood)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000135 (human peripheral blood mononuclear cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)