FF:10615-108G3: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	gastrointestinal carcinoma cell line:ECC12
Species:	Human (Homo sapiens)
Library ID:	CNhs11738
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	male
age	63
cell type	unclassifiable
cell line	ECC12
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005730

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11738		CAGE		DRX007893		DRR008765

Accession ID Hg19

Library id		BAM		CTSS
CNhs11738		DRZ000190		DRZ001575

Accession ID Hg38

Library id		BAM		CTSS
CNhs11738		DRZ011540		DRZ012925

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005730

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10077		RNA-Seq		DRX057134		DRR062893

Accession ID Hg19

Library id		BAM		CTSS
RDhi10077		DRZ007969

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.393
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.346
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.18
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0688
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	1.079
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0688
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.395
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.288
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.107
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.137
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.226
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.248
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0431
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0333
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0688
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.318
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.447
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0688
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11738

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.32116e-4
MA0003.1	MA0003.1	0.158
MA0004.1	MA0004.1	0.297
MA0006.1	MA0006.1	0.328
MA0007.1	MA0007.1	0.09
MA0009.1	MA0009.1	0.789
MA0014.1	MA0014.1	0.967
MA0017.1	MA0017.1	0.392
MA0018.2	MA0018.2	0.0547
MA0019.1	MA0019.1	0.773
MA0024.1	MA0024.1	0.00972
MA0025.1	MA0025.1	0.921
MA0027.1	MA0027.1	0.885
MA0028.1	MA0028.1	0.124
MA0029.1	MA0029.1	0.725
MA0030.1	MA0030.1	0.122
MA0031.1	MA0031.1	0.722
MA0035.2	MA0035.2	0.784
MA0038.1	MA0038.1	0.102
MA0039.2	MA0039.2	0.253
MA0040.1	MA0040.1	0.652
MA0041.1	MA0041.1	0.396
MA0042.1	MA0042.1	0.479
MA0043.1	MA0043.1	0.0905
MA0046.1	MA0046.1	2.162e-13
MA0047.2	MA0047.2	0.0927
MA0048.1	MA0048.1	0.549
MA0050.1	MA0050.1	4.03136e-5
MA0051.1	MA0051.1	9.9138e-4
MA0052.1	MA0052.1	0.416
MA0055.1	MA0055.1	0.797
MA0057.1	MA0057.1	0.0536
MA0058.1	MA0058.1	0.202
MA0059.1	MA0059.1	0.775
MA0060.1	MA0060.1	1.33967e-5
MA0061.1	MA0061.1	0.00448
MA0062.2	MA0062.2	0.192
MA0065.2	MA0065.2	0.185
MA0066.1	MA0066.1	0.198
MA0067.1	MA0067.1	0.833
MA0068.1	MA0068.1	0.479
MA0069.1	MA0069.1	0.4
MA0070.1	MA0070.1	0.0234
MA0071.1	MA0071.1	0.958
MA0072.1	MA0072.1	0.688
MA0073.1	MA0073.1	0.282
MA0074.1	MA0074.1	0.541
MA0076.1	MA0076.1	0.0839
MA0077.1	MA0077.1	0.285
MA0078.1	MA0078.1	0.711
MA0079.2	MA0079.2	0.902
MA0080.2	MA0080.2	1.28481e-9
MA0081.1	MA0081.1	0.0479
MA0083.1	MA0083.1	0.018
MA0084.1	MA0084.1	0.619
MA0087.1	MA0087.1	0.211
MA0088.1	MA0088.1	0.903
MA0090.1	MA0090.1	3.70429e-4
MA0091.1	MA0091.1	0.319
MA0092.1	MA0092.1	0.101
MA0093.1	MA0093.1	0.212
MA0099.2	MA0099.2	2.05907e-14
MA0100.1	MA0100.1	0.229
MA0101.1	MA0101.1	0.0173
MA0102.2	MA0102.2	0.16
MA0103.1	MA0103.1	0.424
MA0104.2	MA0104.2	0.277
MA0105.1	MA0105.1	0.00265
MA0106.1	MA0106.1	0.0677
MA0107.1	MA0107.1	0.00473
MA0108.2	MA0108.2	0.739
MA0111.1	MA0111.1	0.906
MA0112.2	MA0112.2	1.56234e-4
MA0113.1	MA0113.1	0.135
MA0114.1	MA0114.1	0.854
MA0115.1	MA0115.1	0.0878
MA0116.1	MA0116.1	0.0121
MA0117.1	MA0117.1	0.756
MA0119.1	MA0119.1	0.0359
MA0122.1	MA0122.1	0.271
MA0124.1	MA0124.1	0.431
MA0125.1	MA0125.1	0.263
MA0131.1	MA0131.1	0.303
MA0135.1	MA0135.1	0.0563
MA0136.1	MA0136.1	5.91473e-7
MA0137.2	MA0137.2	0.0814
MA0138.2	MA0138.2	0.97
MA0139.1	MA0139.1	0.547
MA0140.1	MA0140.1	0.438
MA0141.1	MA0141.1	0.274
MA0142.1	MA0142.1	0.325
MA0143.1	MA0143.1	0.584
MA0144.1	MA0144.1	0.0668
MA0145.1	MA0145.1	0.0299
MA0146.1	MA0146.1	0.188
MA0147.1	MA0147.1	0.423
MA0148.1	MA0148.1	0.335
MA0149.1	MA0149.1	0.0703
MA0150.1	MA0150.1	0.00508
MA0152.1	MA0152.1	0.759
MA0153.1	MA0153.1	4.33561e-8
MA0154.1	MA0154.1	0.0147
MA0155.1	MA0155.1	0.368
MA0156.1	MA0156.1	0.00151
MA0157.1	MA0157.1	0.791
MA0159.1	MA0159.1	0.134
MA0160.1	MA0160.1	0.334
MA0162.1	MA0162.1	0.0651
MA0163.1	MA0163.1	0.0213
MA0164.1	MA0164.1	0.853
MA0258.1	MA0258.1	0.0361
MA0259.1	MA0259.1	0.247

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11738

Novel motif	Logo	P-value
1	1	0.183
10	10	0.328
100	100	0.533
101	101	0.682
102	102	0.905
103	103	0.0955
104	104	0.931
105	105	0.192
106	106	8.59514e-4
107	107	0.0741
108	108	0.801
109	109	0.144
11	11	0.0447
110	110	0.24
111	111	0.212
112	112	0.338
113	113	0.0196
114	114	0.0783
115	115	0.349
116	116	0.454
117	117	0.426
118	118	0.99
119	119	0.209
12	12	0.66
120	120	0.848
121	121	0.914
122	122	0.673
123	123	0.611
124	124	0.0619
125	125	0.454
126	126	0.945
127	127	0.0397
128	128	0.0114
129	129	0.0914
13	13	0.709
130	130	0.0613
131	131	0.379
132	132	0.866
133	133	0.631
134	134	0.624
135	135	0.00529
136	136	0.499
137	137	0.0307
138	138	0.471
139	139	0.27
14	14	0.632
140	140	0.16
141	141	0.442
142	142	0.687
143	143	1.76259e-4
144	144	0.411
145	145	0.275
146	146	0.474
147	147	0.978
148	148	0.0485
149	149	0.0612
15	15	0.167
150	150	0.344
151	151	0.182
152	152	0.0424
153	153	0.718
154	154	0.605
155	155	0.303
156	156	0.863
157	157	0.607
158	158	0.319
159	159	0.218
16	16	0.206
160	160	0.0949
161	161	0.35
162	162	0.658
163	163	0.76
164	164	0.921
165	165	0.243
166	166	0.796
167	167	0.743
168	168	0.194
169	169	0.00816
17	17	0.127
18	18	0.182
19	19	0.247
2	2	0.284
20	20	0.225
21	21	0.558
22	22	0.115
23	23	0.00853
24	24	0.18
25	25	0.756
26	26	0.292
27	27	0.109
28	28	0.883
29	29	0.459
3	3	0.132
30	30	0.214
31	31	0.732
32	32	0.0248
33	33	0.36
34	34	0.223
35	35	0.728
36	36	0.931
37	37	0.0709
38	38	0.396
39	39	0.0883
4	4	0.744
40	40	0.422
41	41	0.16
42	42	0.272
43	43	0.214
44	44	0.931
45	45	0.178
46	46	0.102
47	47	0.229
48	48	0.229
49	49	0.331
5	5	0.228
50	50	0.669
51	51	0.138
52	52	0.127
53	53	0.276
54	54	0.142
55	55	0.182
56	56	0.377
57	57	0.426
58	58	0.595
59	59	0.0938
6	6	0.53
60	60	0.0306
61	61	0.744
62	62	0.25
63	63	0.0861
64	64	0.453
65	65	0.125
66	66	0.884
67	67	0.683
68	68	0.303
69	69	0.998
7	7	0.821
70	70	0.147
71	71	0.0269
72	72	0.0988
73	73	0.123
74	74	0.257
75	75	0.479
76	76	0.765
77	77	0.107
78	78	0.361
79	79	0.433
8	8	0.202
80	80	0.236
81	81	0.209
82	82	0.119
83	83	0.0866
84	84	0.421
85	85	0.00833
86	86	0.372
87	87	0.195
88	88	0.926
89	89	0.0186
9	9	0.113
90	90	0.218
91	91	0.129
92	92	0.196
93	93	0.984
94	94	0.0444
95	95	0.41
96	96	0.117
97	97	0.816
98	98	0.429
99	99	0.673

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11738

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101533 gastrointestinal cancer cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007788
+|DRA_sample_Accession=CAGE@SAMD00005730
-|accession_numbers=CAGE;DRX007893;DRR008765;DRZ000190;DRZ001575
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005730
+|accession_numbers=CAGE;DRX007893;DRR008765;DRZ000190;DRZ001575;DRZ011540;DRZ012925
+|accession_numbers_RNASeq=RNA-Seq;DRX057134;DRR062893;DRZ007969
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.98!955.61!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.30!196.48!INSM1;;chr20:42984330..42984364,+!p2@HNF4A!2.22!165.25!HNF4A;;chr1:214161272..214161322,+!p1@PROX1!2.13!183.95!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!2.10!123.55!NR0B2;;chr18:55102628..55102646,+!p2@ONECUT2!2.07!116.17!ONECUT2;;chr3:157824202..157824211,-!p3@SHOX2!2.07!116.00!SHOX2;;chr8:11561684..11561751,+!p1@GATA4!2.01!100.55!GATA4;;chr20:22565370..22565388,-!p2@FOXA2!2.00!98.84!FOXA2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.00!98.15!POU3F3;;chr18:55102598..55102623,+!p1@ONECUT2!1.94!87.00!ONECUT2;;chr6:117198400..117198441,+!p1@RFX6!1.93!84.60!RFX6;;chr2:182545234..182545252,-!p1@NEUROD1!1.92!82.19!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!1.91!154.44!DACH1;;chr7:73038839..73038862,-!p1@MLXIPL!1.91!80.31!MLXIPL;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.88!74.64!MEF2B;;chrY:21906594..21906622,-!p1@KDM5D!1.84!67.61!KDM5D;;chr20:22564895..22564910,-!p1@FOXA2!1.83!66.92!FOXA2;;chr15:57511609..57511651,+!p2@TCF12!1.82!107.25!TCF12;;chr7:27205136..27205164,-!p1@HOXA9!1.81!64.18!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!1.81!64.00!ELF3;;chr12:55413751..55413765,+!p1@NEUROD4!1.81!62.98!NEUROD4;;chr17:74137321..74137337,-!p1@FOXJ1!1.78!59.72!FOXJ1;;chrX:25034067..25034088,-!p1@ARX!1.71!50.28!ARX;;chr10:23481233..23481249,+!p1@PTF1A!1.70!48.56!PTF1A;;chr11:61520075..61520136,+!p1@C11orf9!1.69!97.98!C11orf9;;chr15:53082521..53082549,-!p1@ONECUT1!1.68!46.67!ONECUT1;;chr8:76319876..76319926,+!p1@HNF4G!1.66!44.61!HNF4G;;chr19:46367576..46367592,+!p1@FOXA3!1.64!42.56!FOXA3;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.87!DLX5;;chr1:164528687..164528711,+!p6@PBX1!1.62!47.02!PBX1;;chr1:201979703..201979721,+!p2@ELF3!1.61!39.30!ELF3;;chr19:50432453..50432468,+!p1@ATF5!1.60!2068.06!ATF5;;chr20:50159198..50159299,-!p1@NFATC2!1.60!55.77!NFATC2;;chr3:157824156..157824164,-!p4@SHOX2!1.57!35.86!SHOX2;;chr8:53166899..53166914,-!p3@ST18!1.55!34.83!ST18;;chr3:181429704..181429722,+!p1@SOX2!1.54!33.80!SOX2;;chr13:28494130..28494168,+!p1@PDX1!1.54!33.29!PDX1;;chr7:27135591..27135658,-!p1@HOXA1!1.52!60.92!HOXA1;;chr3:157824437..157824459,-!p5@SHOX2!1.46!27.80!SHOX2;;chr1:214161328..214161348,+!p2@PROX1!1.46!27.80!PROX1;;chr17:46690839..46690884,-!p1@HOXB8!1.44!26.77!HOXB8;;chr7:156803329..156803362,-!p1@MNX1!1.44!26.60!MNX1;;chr3:24536231..24536249,-!p4@THRB!1.44!26.43!THRB;;chr5:72744594..72744609,-!p1@FOXD1!1.43!116.17!FOXD1;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.91!SOX2;;chr7:113726357..113726443,+!p1@FOXP2!1.42!43.07!FOXP2;;chr1:160336851..160336868,+!p1@NHLH1!1.42!25.57!NHLH1;;chr13:72441074..72441172,-!p2@DACH1!1.41!24.71!DACH1;;chr14:33403881..33403924,+!p1@NPAS3!1.41!24.54!NPAS3;;chr7:27142290..27142310,-!p1@HOXA2!1.40!23.85!HOXA2;;chr2:172967621..172967637,-!p1@DLX2!1.38!60.57!DLX2;;chr1:214161358..214161377,+!p3@PROX1!1.38!23.17!PROX1;;chr4:147560042..147560046,+!p1@POU4F2!1.36!22.14!POU4F2;;chr8:53162037..53162058,-!p5@ST18!1.36!22.14!ST18;;chr5:158526917..158526932,-!p1@EBF1!1.34!50.62!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!1.33!20.42!HOXA9;;chr2:185463247..185463263,+!p1@ZNF804A!1.32!34.66!ZNF804A;;chr19:50435736..50435781,+!p3@ATF5!1.31!26.94!ATF5;;chr12:24715376..24715432,-!p1@SOX5!1.31!24.19!SOX5;;chr20:50418972..50419029,-!p1@SALL4!1.31!19.56!SALL4;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.67!HOXB3;;chr17:46675619..46675642,-!p5@HOXB6!1.27!17.50!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.26!17.33!HOXB8;;chr2:176969228..176969260,+!p1@HOXD11!1.22!15.62!HOXD11;;chr20:22566120..22566136,-!p4@FOXA2!1.22!15.44!FOXA2;;chr19:33793430..33793447,-!p1@CEBPA!1.18!59.72!CEBPA;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.90!TOX3;;chr7:27196217..27196246,-!p2@HOXA7!1.17!13.90!HOXA7;;chr1:8763440..8763460,-!p2@RERE!1.16!67.78!RERE;;chr18:55102806..55102847,+!p3@ONECUT2!1.16!13.56!ONECUT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.15!13.21!POU3F3;;chrX:84498989..84499003,+!p1@ZNF711!1.14!17.67!ZNF711;;chr3:18486354..18486377,-!p2@SATB1!1.14!15.96!SATB1;;chr17:46622205..46622218,-!p3@HOXB2!1.14!14.76!HOXB2;;chr17:46692624..46692659,-!p3@HOXB8!1.13!12.35!HOXB8;;chr2:239148671..239148686,-!p1@HES6!1.12!44.96!HES6;;chr11:113930425..113930471,+!p1@ZBTB16!1.12!17.67!ZBTB16;;chr3:114819101..114819121,-!p7@ZBTB20!1.12!12.18!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!1.10!30.03!RFX3;;chr2:200323414..200323455,-!p1@SATB2!1.10!25.05!SATB2;;chr17:46622440..46622477,-!p5@HOXB2!1.09!12.70!HOXB2;;chr7:27213893..27213954,-!p1@HOXA10!1.09!11.33!HOXA10;;chr20:21494684..21494708,-!p1@NKX2-2!1.09!11.33!NKX2-2;;chr20:22565185..22565223,-!p3@FOXA2!1.08!11.15!FOXA2;;chr1:244214577..244214593,+!p1@ZNF238!1.08!10.98!ZNF238;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.08!10.98!POU3F3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.08!10.98!TFCP2L1;;chr3:52001448..52001478,-!p2@PCBP4!1.07!150.49!PCBP4;;chr1:204042233..204042249,+!p1@SOX13!1.07!68.12!SOX13;;chr3:24536253..24536328,-!p1@THRB!1.07!20.59!THRB;;chr9:129376233..129376251,+!p2@LMX1B!1.07!10.81!LMX1B;;chr9:129376201..129376225,+!p1@LMX1B!1.07!10.81!LMX1B;;chr21:47063625..47063658,+!p1@PCBP3!1.06!45.82!PCBP3;;chr3:157824322..157824334,-!p7@SHOX2!1.06!10.47!SHOX2;;chr9:3525867..3525902,-!p3@RFX3!1.05!36.03!RFX3;;chr20:43935474..43935490,+!p1@RBPJL!1.05!10.30!RBPJL;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.95!ZFY;;chr3:24206603..24206613,-!p17@THRB!1.03!9.61!THRB;;chr17:46671108..46671147,-!p1@HOXB5!1.02!9.44!HOXB5;;chr1:214161428..214161437,+!p6@PROX1!1.02!9.44!PROX1;;chrX:84499081..84499115,+!p2@ZNF711!1.01!13.73!ZNF711;;chr19:12163769..12163798,-!p1@ZNF878!1.01!12.01!ZNF878;;chr2:172949484..172949522,+!p1@DLX1!1.01!9.27!DLX1;;chr14:36003363..36003378,+!p1@INSM2!1.01!9.27!INSM2;;chr14:33408072..33408114,+!p2@NPAS3!1.00!10.64!NPAS3;;chr3:157824001..157824078,-!p2@SHOX2!1.00!9.09!SHOX2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.00!8.92!SEBOX;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.92!HOXB6;;chr1:165325006..165325012,-!p2@LMX1A!1.00!8.92!LMX1A;;chr12:103352277..103352324,+!p2@ASCL1!1.00!8.92!ASCL1;;chr2:71127699..71127744,+!p1@VAX2!0.99!18.53!VAX2;;chr7:96634878..96634900,+!p2@DLX6!0.99!8.75!DLX6;;chr11:63684602..63684664,-!p1@RCOR2!0.98!17.33!RCOR2;;chr3:40547564..40547616,+!p1@ZNF620!0.98!12.18!ZNF620;;chr7:27135568..27135590,-!p2@HOXA1!0.98!8.58!HOXA1;;chr1:165325939..165325958,-!p1@LMX1A!0.98!8.58!LMX1A;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.24!SIM2;;chr2:176973498..176973524,+!p1@HOXD10!0.97!8.24!HOXD10;;chr5:158527104..158527135,-!p4@EBF1!0.97!8.24!EBF1;;chr1:209979467..209979494,-!p1@IRF6!0.96!9.09!IRF6;;chr7:27153454..27153469,-!p2@HOXA3!0.96!8.06!HOXA3;;chr17:46675558..46675577,-!p2@HOXB6!0.96!8.06!HOXB6;;chr4:149363475..149363492,-!p2@NR3C2!0.96!8.06!NR3C2;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr13:72441506..72441562,-!p3@DACH1!0.94!7.72!DACH1;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.72!HOXA4;;chrX:85403445..85403479,+!p2@DACH2!0.94!7.72!DACH2;;chr17:46703687..46703740,-!p1@HOXB9!0.94!7.72!HOXB9;;chr18:72922811..72922827,+!p1@TSHZ1!0.93!38.44!TSHZ1;;chr3:71630980..71631110,-!p3@FOXP1!0.93!27.28!FOXP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.39!TWIST1;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.55!HOXA3;;chr7:96635178..96635181,+!p1@DLX6!0.93!7.55!DLX6;;chr4:149363494..149363543,-!p1@NR3C2!0.93!7.55!NR3C2;;chr1:10754477..10754517,-!p1@CASZ1!0.92!12.35!CASZ1;;chr5:134369905..134369972,-!p1@PITX1!0.92!11.50!PITX1;;chr1:214161619..214161629,+!p5@PROX1!0.92!7.38!PROX1;;chr3:24206665..24206674,-!p21@THRB!0.92!7.38!THRB;;chr1:212782094..212782109,+!p1@ATF3!0.91!205.06!ATF3;;chr2:66662249..66662267,+!p2@MEIS1!0.91!28.66!MEIS1;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.64!SATB2;;chr9:22447422..22447483,+!p1@DMRTA1!0.91!7.04!DMRTA1;;chr9:37034469..37034474,-!p1@PAX5!0.91!7.04!PAX5;;chr1:10856694..10856715,-!p3@CASZ1!0.90!6.86!CASZ1;;chr3:157824341..157824356,-!p8@SHOX2!0.90!6.86!SHOX2;;chr17:46692603..46692621,-!p6@HOXB8!0.90!6.86!HOXB8;;chr19:6110474..6110551,-!p1@RFX2!0.89!43.41!RFX2;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.83!BCL11A;;chr20:42143077..42143126,+!p1@L3MBTL1!0.89!14.41!L3MBTL;;chr8:60031809..60031835,-!p4@TOX!0.89!8.75!TOX;;chr5:158527139..158527161,-!p5@EBF1!0.89!6.69!EBF1;;chr2:177053386..177053402,+!p1@HOXD1!0.89!6.69!HOXD1;;chr3:114819073..114819100,-!p10@ZBTB20!0.88!6.52!ZBTB20;;chr12:24102576..24102623,-!p2@SOX5!0.88!6.52!SOX5;;chr20:42143136..42143161,+!p3@L3MBTL1!0.87!10.47!L3MBTL;;chr20:50418128..50418147,-!p2@SALL4!0.87!6.35!SALL4;;chr19:45971246..45971265,+!p1@FOSB!0.86!122.52!FOSB;;chr5:176738887..176738934,-!p1@MXD3!0.86!44.61!MXD3;;chr17:46667628..46667642,-!p2@HOXB3!0.86!6.18!HOXB3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.86!6.18!ZBTB7C;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.24!CEBPG;;chr2:176033066..176033087,-!p2@ATF2!0.85!8.06!ATF2;;chr2:25565329..25565342,-!p6@DNMT3A!0.85!7.04!DNMT3A;;chr16:67198633..67198671,+!p1@HSF4!0.85!6.01!HSF4;;chr12:103351694..103351704,+!p6@ASCL1!0.85!6.01!ASCL1;;chr7:27219833..27219845,-!p7@HOXA10!0.85!6.01!HOXA10;;chr5:150284532..150284549,-!p1@ZNF300!0.84!12.70!ZNF300;;chr6:168227552..168227609,+!p1@MLLT4!0.83!50.28!MLLT4;;chr16:52580953..52580992,-!p2@TOX3!0.83!5.83!TOX3;;chr4:149366111..149366128,-!p7@NR3C2!0.83!5.83!NR3C2;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.83!ALX1;;chr1:226595726..226595737,-!p2@PARP1!0.82!14.41!PARP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.44!ZBTB16;;chr7:27183263..27183284,-!p2@HOXA5!0.82!5.66!HOXA5;;chr7:27190547..27190591,-!p1@HOXA6!0.82!5.66!HOXA6;;chr6:126070769..126070801,+!p1@HEY2!0.81!6.35!HEY2;;chr7:27183291..27183324,-!p1@HOXA5!0.81!5.49!HOXA5;;chr12:109747023..109747033,-!p3@FOXN4!0.81!5.49!FOXN4;;chr12:121416340..121416360,+!p1@HNF1A!0.81!5.49!HNF1A;;chr12:24715342..24715354,-!p4@SOX5!0.81!5.49!SOX5;;chr9:14314131..14314147,-!p2@NFIB!0.80!32.09!NFIB;;chr8:60031762..60031803,-!p3@TOX!0.80!8.06!TOX;;chrY:21906761..21906810,-!p2@KDM5D!0.80!5.32!KDM5D;;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@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastrointestinal%2520carcinoma%2520cell%2520line%253aECC12.CNhs11738.10615-108G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastrointestinal%2520carcinoma%2520cell%2520line%253aECC12.CNhs11738.10615-108G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastrointestinal%2520carcinoma%2520cell%2520line%253aECC12.CNhs11738.10615-108G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastrointestinal%2520carcinoma%2520cell%2520line%253aECC12.CNhs11738.10615-108G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastrointestinal%2520carcinoma%2520cell%2520line%253aECC12.CNhs11738.10615-108G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10615-108G3
 |is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533
 |is_obsolete=
 |library_id=CNhs11738
+|library_id_phase_based=2:CNhs11738
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10615
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10615
 |name=gastrointestinal carcinoma cell line:ECC12
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11738,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 64: / Line 78: @@
 |rna_tube_id=108G3
 |rna_weight_ug=170.24025
+|rnaseq_library_id=RDhi10077
 |sample_age=63
 |sample_category=cell lines
@@ Line 87: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10615-108G3;search_select_hide=table117:FF:10615-108G3
 }}

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FF:10615-108G3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0