FF:10853-111F7: Difference between revisions

Latest revision as of 15:10, 3 June 2020

Name:	mesothelioma cell line:Mero-82
Species:	Human (Homo sapiens)
Library ID:	CNhs13069
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	unknown
cell type	mesothelial cell
cell line	Mero-82
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005138

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13069		CAGE		DRX007942		DRR008814

Accession ID Hg19

Library id		BAM		CTSS
CNhs13069		DRZ000239		DRZ001624

Accession ID Hg38

Library id		BAM		CTSS
CNhs13069		DRZ011589		DRZ012974

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.315
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.331
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0951
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0578
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.262
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0951
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0673
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0393
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0951
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.368
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	1.122
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.344
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.347
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.25
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.392
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0951
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.239
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13069

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00356
MA0003.1	MA0003.1	0.145
MA0004.1	MA0004.1	0.23
MA0006.1	MA0006.1	0.795
MA0007.1	MA0007.1	0.242
MA0009.1	MA0009.1	0.277
MA0014.1	MA0014.1	0.542
MA0017.1	MA0017.1	0.393
MA0018.2	MA0018.2	0.13
MA0019.1	MA0019.1	0.218
MA0024.1	MA0024.1	0.0297
MA0025.1	MA0025.1	0.745
MA0027.1	MA0027.1	0.989
MA0028.1	MA0028.1	3.44168e-7
MA0029.1	MA0029.1	0.333
MA0030.1	MA0030.1	0.207
MA0031.1	MA0031.1	0.996
MA0035.2	MA0035.2	0.387
MA0038.1	MA0038.1	0.35
MA0039.2	MA0039.2	0.597
MA0040.1	MA0040.1	0.115
MA0041.1	MA0041.1	0.3
MA0042.1	MA0042.1	0.227
MA0043.1	MA0043.1	0.198
MA0046.1	MA0046.1	0.0994
MA0047.2	MA0047.2	0.0425
MA0048.1	MA0048.1	6.41999e-4
MA0050.1	MA0050.1	2.62327e-18
MA0051.1	MA0051.1	4.57081e-16
MA0052.1	MA0052.1	5.51366e-4
MA0055.1	MA0055.1	8.09558e-4
MA0057.1	MA0057.1	0.699
MA0058.1	MA0058.1	0.329
MA0059.1	MA0059.1	0.00578
MA0060.1	MA0060.1	2.29672e-12
MA0061.1	MA0061.1	0.587
MA0062.2	MA0062.2	2.26742e-5
MA0065.2	MA0065.2	0.257
MA0066.1	MA0066.1	0.614
MA0067.1	MA0067.1	0.0638
MA0068.1	MA0068.1	0.0453
MA0069.1	MA0069.1	0.828
MA0070.1	MA0070.1	0.11
MA0071.1	MA0071.1	0.523
MA0072.1	MA0072.1	0.622
MA0073.1	MA0073.1	0.491
MA0074.1	MA0074.1	0.421
MA0076.1	MA0076.1	1.12357e-6
MA0077.1	MA0077.1	0.675
MA0078.1	MA0078.1	0.64
MA0079.2	MA0079.2	0.385
MA0080.2	MA0080.2	4.15633e-9
MA0081.1	MA0081.1	0.0708
MA0083.1	MA0083.1	0.924
MA0084.1	MA0084.1	0.3
MA0087.1	MA0087.1	0.0512
MA0088.1	MA0088.1	0.0117
MA0090.1	MA0090.1	0.0876
MA0091.1	MA0091.1	0.166
MA0092.1	MA0092.1	0.154
MA0093.1	MA0093.1	0.209
MA0099.2	MA0099.2	0.00517
MA0100.1	MA0100.1	0.715
MA0101.1	MA0101.1	0.648
MA0102.2	MA0102.2	0.0324
MA0103.1	MA0103.1	0.313
MA0104.2	MA0104.2	0.0801
MA0105.1	MA0105.1	0.617
MA0106.1	MA0106.1	0.865
MA0107.1	MA0107.1	0.765
MA0108.2	MA0108.2	0.225
MA0111.1	MA0111.1	0.981
MA0112.2	MA0112.2	0.707
MA0113.1	MA0113.1	0.256
MA0114.1	MA0114.1	0.783
MA0115.1	MA0115.1	0.0497
MA0116.1	MA0116.1	0.877
MA0117.1	MA0117.1	0.369
MA0119.1	MA0119.1	0.859
MA0122.1	MA0122.1	0.264
MA0124.1	MA0124.1	0.707
MA0125.1	MA0125.1	0.789
MA0131.1	MA0131.1	0.215
MA0135.1	MA0135.1	0.00692
MA0136.1	MA0136.1	8.04602e-5
MA0137.2	MA0137.2	0.16
MA0138.2	MA0138.2	0.0915
MA0139.1	MA0139.1	0.677
MA0140.1	MA0140.1	0.0373
MA0141.1	MA0141.1	0.408
MA0142.1	MA0142.1	0.144
MA0143.1	MA0143.1	0.319
MA0144.1	MA0144.1	0.269
MA0145.1	MA0145.1	0.251
MA0146.1	MA0146.1	0.042
MA0147.1	MA0147.1	0.0282
MA0148.1	MA0148.1	0.16
MA0149.1	MA0149.1	0.114
MA0150.1	MA0150.1	0.0212
MA0152.1	MA0152.1	0.732
MA0153.1	MA0153.1	0.0785
MA0154.1	MA0154.1	0.0423
MA0155.1	MA0155.1	0.387
MA0156.1	MA0156.1	0.653
MA0157.1	MA0157.1	0.166
MA0159.1	MA0159.1	0.728
MA0160.1	MA0160.1	0.281
MA0162.1	MA0162.1	0.463
MA0163.1	MA0163.1	0.133
MA0164.1	MA0164.1	0.0777
MA0258.1	MA0258.1	0.48
MA0259.1	MA0259.1	0.118

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13069

Novel motif	Logo	P-value
1	1	0.445
10	10	0.161
100	100	0.0817
101	101	0.651
102	102	0.322
103	103	0.646
104	104	0.677
105	105	0.0323
106	106	0.557
107	107	0.903
108	108	0.957
109	109	0.209
11	11	0.789
110	110	0.223
111	111	0.321
112	112	0.0421
113	113	0.0459
114	114	0.834
115	115	0.614
116	116	0.582
117	117	0.0421
118	118	0.155
119	119	0.726
12	12	0.0782
120	120	0.344
121	121	0.894
122	122	0.961
123	123	0.472
124	124	0.63
125	125	0.906
126	126	0.558
127	127	0.871
128	128	0.114
129	129	0.915
13	13	0.0217
130	130	0.72
131	131	0.567
132	132	0.656
133	133	0.5
134	134	0.174
135	135	0.0311
136	136	0.045
137	137	0.241
138	138	0.214
139	139	0.108
14	14	0.2
140	140	0.849
141	141	0.59
142	142	0.369
143	143	0.943
144	144	0.8
145	145	0.668
146	146	0.384
147	147	0.403
148	148	0.462
149	149	0.123
15	15	0.646
150	150	0.0968
151	151	0.395
152	152	0.0188
153	153	0.907
154	154	0.371
155	155	0.87
156	156	0.81
157	157	0.28
158	158	0.396
159	159	0.746
16	16	0.868
160	160	0.834
161	161	0.686
162	162	0.247
163	163	0.391
164	164	0.892
165	165	0.43
166	166	0.191
167	167	0.069
168	168	0.603
169	169	0.408
17	17	0.931
18	18	0.288
19	19	0.218
2	2	0.148
20	20	0.177
21	21	0.0651
22	22	0.763
23	23	0.0203
24	24	0.75
25	25	0.577
26	26	0.609
27	27	0.743
28	28	0.7
29	29	0.044
3	3	0.509
30	30	0.628
31	31	0.383
32	32	0.978
33	33	0.589
34	34	0.113
35	35	0.813
36	36	0.511
37	37	0.0582
38	38	0.955
39	39	0.992
4	4	0.11
40	40	0.552
41	41	0.0331
42	42	0.734
43	43	0.735
44	44	0.377
45	45	0.283
46	46	0.997
47	47	0.577
48	48	0.55
49	49	0.99
5	5	0.123
50	50	0.331
51	51	0.784
52	52	0.262
53	53	0.282
54	54	0.955
55	55	0.886
56	56	0.949
57	57	0.846
58	58	0.536
59	59	0.448
6	6	0.42
60	60	0.309
61	61	0.0292
62	62	0.403
63	63	0.947
64	64	0.981
65	65	0.609
66	66	3.20764e-9
67	67	0.886
68	68	0.774
69	69	0.346
7	7	0.427
70	70	0.561
71	71	0.242
72	72	0.866
73	73	0.0293
74	74	0.228
75	75	0.00811
76	76	0.101
77	77	0.189
78	78	0.576
79	79	0.977
8	8	0.861
80	80	0.0283
81	81	0.615
82	82	0.223
83	83	0.642
84	84	0.328
85	85	0.214
86	86	0.86
87	87	0.0818
88	88	0.852
89	89	0.193
9	9	0.165
90	90	0.2
91	91	0.171
92	92	0.143
93	93	0.336
94	94	0.618
95	95	0.04
96	96	0.317
97	97	0.705
98	98	0.413
99	99	0.327

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13069

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005138
-|accession_numbers=CAGE;DRX007942;DRR008814;DRZ000239;DRZ001624
+|accession_numbers=CAGE;DRX007942;DRR008814;DRZ000239;DRZ001624;DRZ011589;DRZ012974
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:44331593..44331618,+!p5@ZNF283!1.67!46.26!ZNF283;;chr4:188916918..188916942,+!p1@ZFP42!1.58!36.71!ZFP42;;chr19:22966893..22966924,-!p2@ZNF99!1.49!29.61!ZNF99;;chr14:36989427..36989442,-!p1@NKX2-1!1.37!22.52!NKX2-1;;chr7:63505799..63505904,+!p1@ZNF727!1.36!21.78!ZNF727;;chr19:56879534..56879615,+!p3@ZNF542!1.32!30.84!ZNF542;;chr11:615570..615721,-!p2@IRF7!1.31!37.69!IRF7;;chr19:38210552..38210570,-!p2@ZNF607!1.31!19.33!ZNF607;;chr19:56879817..56879825,+!p4@ZNF542!1.30!19.09!ZNF542;;chr19:12203100..12203132,+!p1@ZNF788!1.29!37.20!ZNF788;;chr15:83953397..83953425,-!p1@BNC1!1.29!21.29!BNC1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.29!18.36!ZNF676;;chr19:22966925..22966958,-!p1@ZNF99!1.28!17.87!ZNF99;;chr19:44331493..44331552,+!p1@ZNF283!1.27!62.65!ZNF283;;chr19:44331555..44331581,+!p2@ZNF283!1.26!36.47!ZNF283;;chr19:56879653..56879743,+!p1@ZNF542!1.23!114.54!ZNF542;;chr5:170736243..170736279,+!p1@TLX3!1.23!15.91!TLX3;;chr19:36909484..36909525,-!p2@ZFP82!1.22!30.10!ZFP82;;chr6:10412600..10412637,-!p1@TFAP2A!1.22!25.70!TFAP2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.21!17.38!TFAP2A;;chr14:37051798..37051831,-!p1@NKX2-8!1.21!15.17!NKX2-8;;chr19:44331884..44331893,+!p8@ZNF283!1.20!14.93!ZNF283;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.68!IRX2;;chr19:9609272..9609297,-!p1@ZNF560!1.19!14.44!ZNF560;;chr6:126240380..126240430,+!p2@NCOA7!1.18!36.71!NCOA7;;chr19:22193731..22193751,-!p1@ZNF208!1.17!13.71!ZNF208;;chr19:58373157..58373159,+!p4@ZNF587!1.16!24.47!ZNF587;;chr10:8096772..8096787,+!p2@GATA3!1.15!15.42!GATA3;;chr19:36909811..36909826,-!p3@ZFP82!1.15!12.97!ZFP82;;chr10:8096631..8096660,+!p1@GATA3!1.14!15.42!GATA3;;chr19:44331916..44331929,+!p6@ZNF283!1.14!12.73!ZNF283;;chr2:231084639..231084654,-!p2@SP110!1.13!20.80!SP110;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.48!HOXB6;;chr19:9420326..9420349,-!p@chr19:9420326..9420349,-!1.12!12.24!ZNF699;;chr6:10415276..10415341,-!p2@TFAP2A!1.11!14.68!TFAP2A;;chr19:52932444..52932455,+!p2@ZNF534!1.11!11.75!ZNF534;;chr11:615942..615957,-!p1@IRF7!1.10!110.62!IRF7;;chr19:56879625..56879636,+!p5@ZNF542!1.10!11.50!ZNF542;;chr17:46703687..46703740,-!p1@HOXB9!1.10!11.50!HOXB9;;chr19:22469236..22469266,+!p1@ZNF729!1.06!10.52!ZNF729;;chr19:22817119..22817145,+!p1@ZNF492!1.05!17.38!ZNF492;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.28!HOXA9;;chr19:36909838..36909849,-!p5@ZFP82!1.03!9.79!ZFP82;;chr19:38183138..38183157,-!p2@ZNF781!1.03!9.79!ZNF781;;chr2:191878812..191878823,-!p2@STAT1!1.02!12.24!STAT1;;chr19:2867325..2867348,+!p1@ZNF556!1.02!9.54!ZNF556;;chr19:21324863..21324874,+!p2@ZNF431!1.00!15.91!ZNF431;;chr17:46687959..46688007,-!p2@HOXB7!1.00!12.48!HOXB7;;chr19:37464453..37464515,+!p4@ZNF568!1.00!9.06!ZNF568;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.06!GATA4;;chr6:34204921..34204939,+!p3@HMGA1!0.99!266.76!HMGA1;;chr19:53758058..53758088,-!p2@ZNF677!0.97!28.14!ZNF677;;chr19:38146320..38146401,-!p1@ZFP30!0.96!46.01!ZFP30;;chr19:53496768..53496799,-!p1@ZNF702P!0.96!12.73!ZNF702P;;chr6:126240356..126240379,+!p7@NCOA7!0.95!9.79!NCOA7;;chr6:85473156..85473210,-!p2@TBX18!0.95!9.79!TBX18;;chr16:86544113..86544145,+!p1@FOXF1!0.93!9.54!FOXF1;;chr19:21579964..21579975,+!p2@ZNF493!0.93!8.57!ZNF493;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.59!HOXA2;;chr19:52932395..52932413,+!p1@ZNF534!0.93!7.59!ZNF534;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.77!HOXB7;;chr4:299227..299272,-!p1@ZNF732!0.92!7.34!ZNF732;;chr19:22235279..22235301,+!p1@ZNF257!0.91!13.95!ZNF257;;chr5:134369905..134369972,-!p1@PITX1!0.90!10.77!PITX1;;chr5:170736216..170736238,+!p2@TLX3!0.90!6.85!TLX3;;chr7:27153454..27153469,-!p2@HOXA3!0.90!6.85!HOXA3;;chr11:46299199..46299233,+!p1@CREB3L1!0.89!36.22!CREB3L1;;chr11:65687243..65687276,+!p8@DRAP1!0.89!9.30!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.81!DRAP1;;chr10:104155659..104155676,+!p4@NFKB2!0.88!8.32!NFKB2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.88!6.61!SEBOX;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.32!SMAD3;;chr19:22605097..22605121,-!p2@ZNF98!0.87!6.36!ZNF98;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.36!SIM2;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.54!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!0.85!7.10!HOXB2;;chr17:46132044..46132080,+!p4@NFE2L1!0.85!6.12!NFE2L1;;chr2:176994408..176994492,+!p1@HOXD8!0.85!6.12!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.12!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.12!TBX20;;chr7:5111723..5111807,+!p2@RBAK!0.85!6.12!RBAK;;chr8:60031619..60031676,-!p1@TOX!0.84!13.46!TOX;;chr7:27205106..27205134,-!p2@HOXA9!0.84!5.87!HOXA9;;chr10:28032421..28032494,-!p2@MKX!0.84!5.87!MKX;;chr12:124873357..124873401,-!p1@NCOR2!0.83!72.20!NCOR2;;chr11:65686952..65686975,+!p5@DRAP1!0.83!33.77!DRAP1;;chr14:24630902..24630948,+!p2@IRF9!0.83!7.10!IRF9;;chr17:41622765..41622821,-!p2@ETV4!0.82!8.81!ETV4;;chr17:41622925..41622976,-!p3@ETV4!0.82!8.57!ETV4;;chr6:10412477..10412490,-!p10@TFAP2A!0.82!5.63!TFAP2A;;chr19:37464063..37464127,+!p2@ZNF568!0.81!7.34!ZNF568;;chr6:126240442..126240459,+!p4@NCOA7!0.81!7.10!NCOA7;;chr2:231084820..231084836,-!p5@SP110!0.81!6.36!SP110;;chr19:58629742..58629787,-!p2@ZSCAN18!0.81!5.38!ZSCAN18;;chr19:20188776..20188826,+!p1@ZNF90!0.80!15.42!ZNF90;;chr8:106330656..106330684,+!p1@ZFPM2!0.80!14.93!ZFPM2;;chr19:21203481..21203504,+!p2@ZNF430!0.80!12.97!ZNF430;;chr2:191878874..191878938,-!p1@STAT1!0.79!306.66!STAT1;;chr19:24097706..24097731,+!p2@ZNF726!0.79!10.28!ZNF726;;chr8:67525443..67525459,-!p2@MYBL1!0.79!8.08!MYBL1;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.64!IFI16;;chr12:80084737..80084763,-!p3@PAWR!0.77!20.07!PAWR;;chr10:28034739..28034756,-!p1@MKX!0.77!4.89!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.77!4.89!HOXC9;;chr20:42295745..42295765,+!p1@MYBL2!0.76!86.64!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.74!FOXD1;;chr18:51750414..51750449,-!p5@MBD2!0.76!9.79!MBD2;;chr8:60031682..60031710,-!p2@TOX!0.76!8.08!TOX;;chr7:27788205..27788255,+!p2@TAX1BP1!0.76!7.83!TAX1BP1;;chr12:80083544..80083558,-!p13@PAWR!0.76!6.12!PAWR;;chr17:46622229..46622257,-!p6@HOXB2!0.76!5.63!HOXB2;;chr1:158979792..158979814,+!p2@IFI16!0.75!48.46!IFI16;;chr19:21579908..21579949,+!p1@ZNF493!0.75!30.59!ZNF493;;chr19:58694421..58694485,+!p1@ZNF274!0.75!26.68!ZNF274;;chr5:142780189..142780223,-!p6@NR3C1!0.75!4.65!NR3C1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.65!HOXC5;;chr14:36989358..36989378,-!p3@NKX2-1!0.75!4.65!NKX2-1;;chr7:139762641..139762768,-!p1@PARP12!0.74!68.04!PARP12;;chr10:8095593..8095625,+!p3@GATA3!0.74!5.38!GATA3;;chr15:67418119..67418162,+!p5@SMAD3!0.74!5.14!SMAD3;;chr12:3068544..3068597,+!p1@TEAD4!0.73!28.88!TEAD4;;chr18:19749541..19749557,+!p1@GATA6!0.73!14.93!GATA6;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.99!TWIST1;;chr19:22605136..22605154,-!p1@ZNF98!0.73!4.41!ZNF98;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.73!4.41!ZNF177;;chr4:174450089..174450153,-!p2@HAND2!0.73!4.41!HAND2;;chr19:40562072..40562143,-!p1@ZNF780B!0.72!43.81!ZNF780B;;chr19:37341752..37341816,+!p1@ZNF345!0.72!14.19!ZNF345;;chr8:86089417..86089440,+!p2@E2F5!0.72!9.06!E2F5;;chr19:38085768..38085821,+!p1@ZNF540!0.72!6.61!ZNF540;;chr19:57999101..57999158,+!p1@ZNF419!0.71!31.82!ZNF419;;chr12:7079780..7079791,-!p2@PHB2!0.71!24.47!PHB2;;chr6:126102292..126102329,+!p3@NCOA7!0.71!14.93!NCOA7;;chr19:38042240..38042309,+!p2@ZNF540!0.71!6.61!ZNF540;;chr12:54402745..54402788,+!p1@HOXC8!0.71!4.16!HOXC8;;chr14:36989940..36989957,-!p2@NKX2-1!0.71!4.16!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.71!4.16!ZSCAN1;;chr3:141087393..141087426,+!p3@ZBTB38!0.70!17.62!ZBTB38;;chr19:56904880..56904919,-!p1@ZNF582!0.70!10.77!ZNF582;;chr8:60031762..60031803,-!p3@TOX!0.70!6.12!TOX;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.63!NR2F2;;chr3:170076314..170076334,+!p2@SKIL!0.70!5.38!SKIL;;chr6:126240463..126240489,+!p6@NCOA7!0.70!4.65!NCOA7;;chr11:65667884..65667895,-!p2@FOSL1!0.69!17.13!FOSL1;;chr19:58095501..58095535,+!p1@ZIK1!0.69!15.17!ZIK1;;chr2:185463247..185463263,+!p1@ZNF804A!0.69!7.34!ZNF804A;;chr17:46622440..46622477,-!p5@HOXB2!0.69!4.41!HOXB2;;chr15:67418177..67418204,+!p9@SMAD3!0.69!3.92!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.69!3.92!ETV4;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.69!3.92!ZNF676;;chr14:37051768..37051779,-!p4@NKX2-8!0.69!3.92!NKX2-8;;chr5:142780237..142780261,-!p7@NR3C1!0.69!3.92!NR3C1;;chr22:22874610..22874616,-!p1@ZNF280A!0.69!3.92!ZNF280A;;chr12:80084303..80084332,-!p1@PAWR!0.68!25.21!PAWR;;chr11:65687362..65687436,+!p3@DRAP1!0.68!19.58!DRAP1;;chr9:110252035..110252057,-!p1@KLF4!0.67!69.02!KLF4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.09!GLIS2;;chr3:128206762..128206781,-!p2@GATA2!0.67!26.19!GATA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.67!17.62!ZFHX4;;chr8:86089369..86089408,+!p1@E2F5!0.67!11.01!E2F5;;chr19:44331461..44331482,+!p3@ZNF283!0.67!6.36!ZNF283;;chr11:64764435..64764449,-!p1@BATF2!0.67!5.38!BATF2;;chr8:106330696..106330719,+!p2@ZFPM2!0.67!4.89!ZFPM2;;chr8:60031809..60031835,-!p4@TOX!0.67!4.89!TOX;;chr17:41622834..41622883,-!p6@ETV4!0.67!4.65!ETV4;;chr15:83953373..83953386,-!p2@BNC1!0.67!3.67!BNC1;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.67!ISL1;;chr21:38071403..38071428,+!p2@SIM2!0.67!3.67!SIM2;;chr2:231084659..231084721,-!p1@SP110!0.65!95.69!SP110;;chr19:52598958..52599026,-!p1@ZNF841!0.65!38.42!ZNF841;;chr19:21106081..21106115,+!p2@ZNF85!0.65!11.50!ZNF85;;chr11:46299539..46299620,+!p2@CREB3L1!0.65!6.36!CREB3L1;;chr19:37407411..37407451,+!p3@ZNF568!0.65!4.65!ZNF568;;chr14:36989379..36989390,-!p8@NKX2-1!0.65!3.43!NKX2-1;;chr19:54024313..54024361,+!p7@ZNF331!0.65!3.43!ZNF331;;chr6:28321971..28321995,-!p1@ZNF323!0.65!3.43!ZNF323;;chr8:128748308..128748324,+!p2@MYC!0.64!111.36!MYC;;chr19:37958086..37958150,-!p1@ZNF569!0.64!14.93!ZNF569;;chr19:21512115..21512135,-!p3@ZNF708!0.64!7.59!ZNF708;;chr1:935398..935465,-!p2@HES4!0.64!7.59!HES4;;chr19:52956798..52956843,+!p1@ZNF578!0.64!7.34!ZNF578;;chr11:65686802..65686818,+!p6@DRAP1!0.64!6.36!DRAP1;;chr19:56904947..56904975,-!p2@ZNF582!0.64!6.12!ZNF582;;chr3:42947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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-82.CNhs13069.10853-111F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10853-111F7
 |is_a=EFO:0002091;;FF:0000210;;FF:0102424
 |is_obsolete=
 |library_id=CNhs13069
-|library_id_phase_based=1:CNhs13069
+|library_id_phase_based=2:CNhs13069
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10853
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10853
 |name=mesothelioma cell line:Mero-82
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13069,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10853-111F7;search_select_hide=table117:FF:10853-111F7
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FF:10853-111F7: Difference between revisions

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Latest revision as of 15:10, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0