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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004942
|DRA_sample_Accession=CAGE@SAMD00004942
|accession_numbers=CAGE;DRX008341;DRR009213;DRZ000638;DRZ002023
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004942
|accession_numbers=CAGE;DRX008341;DRR009213;DRZ000638;DRZ002023;DRZ011988;DRZ013373
|accession_numbers_RNASeq=sRNA-Seq;DRX037168;DRR041534;DRZ007176
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.02!102.71!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!1.98!266.76!MSX1;;chr3:147127177..147127194,+!p2@ZIC1!1.91!80.96!ZIC1;;chr14:61116183..61116208,-!p1@SIX1!1.80!224.26!SIX1;;chr6:34204921..34204939,+!p3@HMGA1!1.68!1327.97!HMGA1;;chr3:147111231..147111281,+!p3@ZIC1!1.62!40.26!ZIC1;;chr6:85474299..85474324,-!p1@TBX18!1.59!67.05!TBX18;;chr15:80843484..80843499,+!p5@ARNT2!1.54!33.53!ARNT2;;chr5:92918919..92918942,+!p1@NR2F1!1.51!135.57!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!1.47!127.38!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.44!70.31!OSR1;;chr13:100634031..100634045,+!p1@ZIC2!1.41!24.67!ZIC2;;chr1:170633348..170633399,+!p2@PRRX1!1.20!20.30!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.00!FOXD1;;chr12:66218255..66218304,+!p3@HMGA2!1.16!36.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.16!25.57!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.12!31.85!HIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.68!C11orf9;;chr17:41622765..41622821,-!p2@ETV4!1.11!18.28!ETV4;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.81!FOXF2;;chr6:34204973..34204990,+!p4@HMGA1!1.08!148.46!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.77!ETV4;;chr14:61116168..61116180,-!p2@SIX1!1.08!12.56!SIX1;;chr9:130954041..130954121,-!p2@CIZ1!1.06!45.64!CIZ1;;chr3:147124307..147124336,-!p2@ZIC4!1.05!10.09!ZIC4;;chr8:49833948..49833973,-!p2@SNAI2!1.04!63.91!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!1.04!28.14!TWIST1;;chr2:45236540..45236577,-!p1@SIX2!1.04!9.98!SIX2;;chr11:44331576..44331650,-!p1@ALX4!1.04!9.98!ALX4;;chr15:57511609..57511651,+!p2@TCF12!1.02!15.92!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.02!10.65!PRRX1;;chr5:92918768..92918783,+!p8@NR2F1!1.01!9.19!NR2F1;;chr17:41622925..41622976,-!p3@ETV4!0.98!12.90!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.56!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!0.98!8.52!HIF3A;;chr2:5832508..5832524,+!p1@SOX11!0.98!8.52!SOX11;;chr3:147139053..147139112,+!p5@ZIC1!0.97!8.41!ZIC1;;chr12:85673977..85674015,+!p1@ALX1!0.97!8.41!ALX1;;chr15:96873984..96873999,+!p3@NR2F2!0.96!61.00!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.42!PRRX1;;chr3:147111317..147111328,+!p8@ZIC1!0.96!8.19!ZIC1;;chr12:96588368..96588394,+!p3@ELK3!0.95!21.98!ELK3;;chr13:100623375..100623425,-!p1@ZIC5!0.94!7.74!ZIC5;;chr3:147111198..147111225,+!p4@ZIC1!0.94!7.62!ZIC1;;chr15:96873921..96873946,+!p1@NR2F2!0.92!216.97!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.81!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!0.92!18.73!FOXC2;;chr20:55204351..55204377,+!p1@TFAP2C!0.92!9.42!TFAP2C;;chr2:121493425..121493474,+!p1@GLI2!0.91!16.03!GLI2;;chr5:92918789..92918800,+!p12@NR2F1!0.91!7.06!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.90!65.71!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.62!PRRX1;;chr5:92918894..92918912,+!p2@NR2F1!0.88!22.54!NR2F1;;chr8:25902876..25902936,-!p1@EBF2!0.87!6.39!EBF2;;chr12:2986206..2986258,-!p2@FOXM1!0.86!40.03!FOXM1;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.43!ETV1;;chr20:62462566..62462631,-!p1@ZBTB46!0.86!12.22!ZBTB46;;chr14:74256787..74256858,-!p6@C14orf43!0.86!6.28!C14orf43;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.07!BCL3;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.87!HMGA2;;chr12:96588279..96588299,+!p4@ELK3!0.83!29.27!ELK3;;chr5:72744562..72744573,-!p3@FOXD1!0.83!7.29!FOXD1;;chr15:96873861..96873872,+!p9@NR2F2!0.82!12.11!NR2F2;;chr8:49833978..49833996,-!p1@SNAI2!0.81!121.77!SNAI2;;chr6:31126291..31126399,+!p1@TCF19!0.81!55.73!TCF19;;chr5:92918860..92918871,+!p10@NR2F1!0.81!6.17!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.49!KDM5D;;chr12:66218573..66218596,+!p7@HMGA2!0.80!8.30!HMGA2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.51!NR2F2;;chr4:299227..299272,-!p1@ZNF732!0.80!5.38!ZNF732;;chr2:45236579..45236596,-!p2@SIX2!0.80!5.27!SIX2;;chr12:66218378..66218401,+!p6@HMGA2!0.79!8.30!HMGA2;;chr3:25469724..25469773,+!p1@RARB!0.79!7.62!RARB;;chr12:66218443..66218461,+!p8@HMGA2!0.79!6.73!HMGA2;;chr15:96869255..96869291,+!p6@NR2F2!0.78!9.64!NR2F2;;chr13:100634004..100634025,+!p2@ZIC2!0.78!5.05!ZIC2;;chr5:92919100..92919135,+!p3@NR2F1!0.77!6.06!NR2F1;;chr20:42295745..42295765,+!p1@MYBL2!0.76!86.45!MYBL2;;chr15:80696703..80696754,+!p1@ARNT2!0.76!6.50!ARNT2;;chr15:80842979..80842998,+!p20@ARNT2!0.76!4.71!ARNT2;;chr8:77593750..77593757,+!p3@ZFHX4!0.76!4.71!ZFHX4;;chr10:48355030..48355090,+!p1@ZNF488!0.75!6.17!ZNF488;;chr5:92919068..92919082,+!p5@NR2F1!0.75!5.61!NR2F1;;chrX:136648643..136648711,+!p2@ZIC3!0.75!4.60!ZIC3;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.01!AEBP1;;chr12:124873357..124873401,-!p1@NCOR2!0.74!58.53!NCOR2;;chr10:114710244..114710257,+!p3@TCF7L2!0.74!13.12!TCF7L2;;chr15:96874927..96874938,+!p8@NR2F2!0.74!10.32!NR2F2;;chr9:16705069..16705086,-!p3@BNC2!0.74!4.49!BNC2;;chr3:147111285..147111298,+!p10@ZIC1!0.74!4.49!ZIC1;;chr17:41623009..41623053,-!p4@ETV4!0.73!7.51!ETV4;;chr1:54203698..54203719,-!p@chr1:54203698..54203719,-!0.73!4.37!GLIS1;;chr6:85473156..85473210,-!p2@TBX18!0.72!5.38!TBX18;;chr12:66218003..66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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000708
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor1.CNhs11320.11493-119E8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor1.CNhs11320.11493-119E8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor1.CNhs11320.11493-119E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor1.CNhs11320.11493-119E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor1.CNhs11320.11493-119E8.hg38.nobarcode.ctss.bed.gz
|id=FF:11493-119E8
|id=FF:11493-119E8
|is_a=EFO:0002091;;FF:0000091
|is_a=EFO:0002091;;FF:0000091
|is_obsolete=
|is_obsolete=
|library_id=CNhs11320
|library_id=CNhs11320
|library_id_phase_based=1:CNhs11320
|library_id_phase_based=2:CNhs11320
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11493
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GCCAAT.11493
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11493
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GCCAAT.11493
|name=Meningeal Cells, donor1
|name=Meningeal Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11320,LSID767,release009,COMPLETED
|profile_hcage=CNhs11320,LSID767,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 80:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=HOX{A5,B5}:1.40319639254;PAX8:1.39053656199;TFDP1:1.19505346389;GFI1:1.18412464525;EBF1:1.16924168796;GZF1:1.11892751149;CRX:1.06707146234;EN1,2:1.01694672481;NFY{A,B,C}:1.00438251277;XCPE1{core}:0.965853969922;ZIC1..3:0.936597956287;LEF1_TCF7_TCF7L1,2:0.932294057298;TFAP4:0.923935747612;TLX1..3_NFIC{dimer}:0.891403667717;ZNF238:0.868582420787;TEAD1:0.829776114166;HES1:0.806256867324;GTF2A1,2:0.801322602888;E2F1..5:0.800149150025;FOX{I1,J2}:0.788238406288;TAL1_TCF{3,4,12}:0.774739039289;NR3C1:0.725654641155;LHX3,4:0.723406475386;TFCP2:0.716117291417;SRF:0.677936892678;PBX1:0.653272243363;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.596267635786;MYB:0.592190353993;ZNF143:0.582776280166;IKZF1:0.576816720829;SOX17:0.573884940297;HAND1,2:0.559939708124;T:0.549292784825;PAX1,9:0.545980279405;ZNF423:0.545584541362;ZNF148:0.535912745022;SPZ1:0.472194185392;NANOG:0.468369976549;ESRRA:0.417843136983;SP1:0.415923092465;SOX{8,9,10}:0.391027580253;bHLH_family:0.387917572837;ONECUT1,2:0.383369246043;HNF4A_NR2F1,2:0.3674202473;HSF1,2:0.364236035942;GTF2I:0.362125959365;MAZ:0.357521891231;MZF1:0.357346217855;NRF1:0.316423434592;BACH2:0.30479279595;GFI1B:0.301022018174;MYBL2:0.295013214252;HBP1_HMGB_SSRP1_UBTF:0.279912099197;AR:0.272200918699;TP53:0.267558150537;HLF:0.249716360062;MEF2{A,B,C,D}:0.24835370951;TFAP2{A,C}:0.235451662751;ELF1,2,4:0.230613392038;FOS_FOS{B,L1}_JUN{B,D}:0.217981168342;NFE2L2:0.215408995567;TFAP2B:0.208375608333;STAT5{A,B}:0.201465262433;NFATC1..3:0.201052597644;FOSL2:0.187229460873;TBX4,5:0.181405072556;RXRA_VDR{dimer}:0.161810191578;PATZ1:0.152715995223;PAX3,7:0.152697340668;NR5A1,2:0.150671164697;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143111981508;HIC1:0.130415335525;KLF4:0.129630118661;NFE2:0.121156064271;BREu{core}:0.109921428757;NHLH1,2:0.103180121919;SOX2:0.0901086291835;FOXO1,3,4:0.0781894672994;PAX5:0.0774624536221;RBPJ:0.0773712160686;PDX1:0.076042050358;NR1H4:0.0697239772626;GATA4:0.0532370174137;ZBTB6:0.0517303065622;ESR1:0.0450791680094;PRRX1,2:0.0385086787256;ZFP161:0.0378812822286;ELK1,4_GABP{A,B1}:0.0372882143848;ADNP_IRX_SIX_ZHX:0.0275534175295;FOXA2:0.00126997509218;HNF1A:-0.0156825380728;NKX2-2,8:-0.0209670704025;NKX3-1:-0.0224568130228;CEBPA,B_DDIT3:-0.0272287809352;ETS1,2:-0.0314906661793;PRDM1:-0.0417871158396;NFIX:-0.048244272788;POU1F1:-0.054877011201;CDC5L:-0.0743412792816;POU3F1..4:-0.0831814872255;ALX4:-0.0945770036936;STAT1,3:-0.0982058076761;CUX2:-0.0983344107566;JUN:-0.0990536626964;RFX1:-0.104555455853;MTF1:-0.112720700502;GATA6:-0.122368384234;XBP1:-0.12298721097;POU2F1..3:-0.137934830113;NANOG{mouse}:-0.140656951072;MED-1{core}:-0.141238509531;RREB1:-0.145312179495;NR6A1:-0.150511845831;EP300:-0.151247454554;TBP:-0.155461307935;TOPORS:-0.166150455468;RUNX1..3:-0.176597056542;GCM1,2:-0.184694101828;ARID5B:-0.185705885281;HOX{A4,D4}:-0.193750436518;ALX1:-0.199642450425;RXR{A,B,G}:-0.208577909175;ZNF384:-0.22442003154;HOX{A6,A7,B6,B7}:-0.225979060147;TGIF1:-0.226982628706;GLI1..3:-0.233033429513;NKX2-3_NKX2-5:-0.236368563999;PAX2:-0.245178419473;AHR_ARNT_ARNT2:-0.255071987073;NKX2-1,4:-0.256287545393;YY1:-0.257833911883;SPIB:-0.262879181985;OCT4_SOX2{dimer}:-0.263278043616;ATF6:-0.265337093907;NFKB1_REL_RELA:-0.276637931821;MTE{core}:-0.278193906878;POU5F1:-0.282197617748;HMGA1,2:-0.285508486264;HOXA9_MEIS1:-0.315192952327;TEF:-0.316747525826;FOXQ1:-0.316938492854;BPTF:-0.328311620174;FOXM1:-0.329389303987;SOX5:-0.337417167235;SPI1:-0.34132923984;MYFfamily:-0.353860484419;NFE2L1:-0.358845458053;NFIL3:-0.388936127526;REST:-0.390109620655;STAT2,4,6:-0.393968339169;MAFB:-0.394850754088;PAX4:-0.415198264828;UFEwm:-0.418228826531;FOXP3:-0.444266714735;RORA:-0.454764442905;DMAP1_NCOR{1,2}_SMARC:-0.457265202737;PPARG:-0.465207468097;CREB1:-0.485389977613;FOXL1:-0.502872738238;EGR1..3:-0.504893343415;NKX6-1,2:-0.516995467389;HMX1:-0.520318735826;HIF1A:-0.533174747163;FOX{F1,F2,J1}:-0.546904488694;PAX6:-0.559605529265;SMAD1..7,9:-0.579551391476;SNAI1..3:-0.585779283471;NKX3-2:-0.588656185859;ATF2:-0.614811651418;AIRE:-0.665024392058;IRF7:-0.678393478933;ATF4:-0.682875967622;FOXD3:-0.687929991044;VSX1,2:-0.688321421804;MYOD1:-0.690312501585;ATF5_CREB3:-0.701236861617;RFX2..5_RFXANK_RFXAP:-0.711319835727;LMO2:-0.718629177695;IRF1,2:-0.745918939772;FOX{D1,D2}:-0.765285121505;SREBF1,2:-0.775300297221;FOXP1:-0.791258589967;EVI1:-0.79210665047;POU6F1:-0.828157077711;PITX1..3:-0.838974368791;ZEB1:-0.927428625809;DBP:-0.940874370096;CDX1,2,4:-1.09358491256;TLX2:-1.11653809968;ZBTB16:-1.17060038877;IKZF2:-1.17104382507;FOXN1:-1.26372439609
|top_motifs=HOX{A5,B5}:1.40319639254;PAX8:1.39053656199;TFDP1:1.19505346389;GFI1:1.18412464525;EBF1:1.16924168796;GZF1:1.11892751149;CRX:1.06707146234;EN1,2:1.01694672481;NFY{A,B,C}:1.00438251277;XCPE1{core}:0.965853969922;ZIC1..3:0.936597956287;LEF1_TCF7_TCF7L1,2:0.932294057298;TFAP4:0.923935747612;TLX1..3_NFIC{dimer}:0.891403667717;ZNF238:0.868582420787;TEAD1:0.829776114166;HES1:0.806256867324;GTF2A1,2:0.801322602888;E2F1..5:0.800149150025;FOX{I1,J2}:0.788238406288;TAL1_TCF{3,4,12}:0.774739039289;NR3C1:0.725654641155;LHX3,4:0.723406475386;TFCP2:0.716117291417;SRF:0.677936892678;PBX1:0.653272243363;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.596267635786;MYB:0.592190353993;ZNF143:0.582776280166;IKZF1:0.576816720829;SOX17:0.573884940297;HAND1,2:0.559939708124;T:0.549292784825;PAX1,9:0.545980279405;ZNF423:0.545584541362;ZNF148:0.535912745022;SPZ1:0.472194185392;NANOG:0.468369976549;ESRRA:0.417843136983;SP1:0.415923092465;SOX{8,9,10}:0.391027580253;bHLH_family:0.387917572837;ONECUT1,2:0.383369246043;HNF4A_NR2F1,2:0.3674202473;HSF1,2:0.364236035942;GTF2I:0.362125959365;MAZ:0.357521891231;MZF1:0.357346217855;NRF1:0.316423434592;BACH2:0.30479279595;GFI1B:0.301022018174;MYBL2:0.295013214252;HBP1_HMGB_SSRP1_UBTF:0.279912099197;AR:0.272200918699;TP53:0.267558150537;HLF:0.249716360062;MEF2{A,B,C,D}:0.24835370951;TFAP2{A,C}:0.235451662751;ELF1,2,4:0.230613392038;FOS_FOS{B,L1}_JUN{B,D}:0.217981168342;NFE2L2:0.215408995567;TFAP2B:0.208375608333;STAT5{A,B}:0.201465262433;NFATC1..3:0.201052597644;FOSL2:0.187229460873;TBX4,5:0.181405072556;RXRA_VDR{dimer}:0.161810191578;PATZ1:0.152715995223;PAX3,7:0.152697340668;NR5A1,2:0.150671164697;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143111981508;HIC1:0.130415335525;KLF4:0.129630118661;NFE2:0.121156064271;BREu{core}:0.109921428757;NHLH1,2:0.103180121919;SOX2:0.0901086291835;FOXO1,3,4:0.0781894672994;PAX5:0.0774624536221;RBPJ:0.0773712160686;PDX1:0.076042050358;NR1H4:0.0697239772626;GATA4:0.0532370174137;ZBTB6:0.0517303065622;ESR1:0.0450791680094;PRRX1,2:0.0385086787256;ZFP161:0.0378812822286;ELK1,4_GABP{A,B1}:0.0372882143848;ADNP_IRX_SIX_ZHX:0.0275534175295;FOXA2:0.00126997509218;HNF1A:-0.0156825380728;NKX2-2,8:-0.0209670704025;NKX3-1:-0.0224568130228;CEBPA,B_DDIT3:-0.0272287809352;ETS1,2:-0.0314906661793;PRDM1:-0.0417871158396;NFIX:-0.048244272788;POU1F1:-0.054877011201;CDC5L:-0.0743412792816;POU3F1..4:-0.0831814872255;ALX4:-0.0945770036936;STAT1,3:-0.0982058076761;CUX2:-0.0983344107566;JUN:-0.0990536626964;RFX1:-0.104555455853;MTF1:-0.112720700502;GATA6:-0.122368384234;XBP1:-0.12298721097;POU2F1..3:-0.137934830113;NANOG{mouse}:-0.140656951072;MED-1{core}:-0.141238509531;RREB1:-0.145312179495;NR6A1:-0.150511845831;EP300:-0.151247454554;TBP:-0.155461307935;TOPORS:-0.166150455468;RUNX1..3:-0.176597056542;GCM1,2:-0.184694101828;ARID5B:-0.185705885281;HOX{A4,D4}:-0.193750436518;ALX1:-0.199642450425;RXR{A,B,G}:-0.208577909175;ZNF384:-0.22442003154;HOX{A6,A7,B6,B7}:-0.225979060147;TGIF1:-0.226982628706;GLI1..3:-0.233033429513;NKX2-3_NKX2-5:-0.236368563999;PAX2:-0.245178419473;AHR_ARNT_ARNT2:-0.255071987073;NKX2-1,4:-0.256287545393;YY1:-0.257833911883;SPIB:-0.262879181985;OCT4_SOX2{dimer}:-0.263278043616;ATF6:-0.265337093907;NFKB1_REL_RELA:-0.276637931821;MTE{core}:-0.278193906878;POU5F1:-0.282197617748;HMGA1,2:-0.285508486264;HOXA9_MEIS1:-0.315192952327;TEF:-0.316747525826;FOXQ1:-0.316938492854;BPTF:-0.328311620174;FOXM1:-0.329389303987;SOX5:-0.337417167235;SPI1:-0.34132923984;MYFfamily:-0.353860484419;NFE2L1:-0.358845458053;NFIL3:-0.388936127526;REST:-0.390109620655;STAT2,4,6:-0.393968339169;MAFB:-0.394850754088;PAX4:-0.415198264828;UFEwm:-0.418228826531;FOXP3:-0.444266714735;RORA:-0.454764442905;DMAP1_NCOR{1,2}_SMARC:-0.457265202737;PPARG:-0.465207468097;CREB1:-0.485389977613;FOXL1:-0.502872738238;EGR1..3:-0.504893343415;NKX6-1,2:-0.516995467389;HMX1:-0.520318735826;HIF1A:-0.533174747163;FOX{F1,F2,J1}:-0.546904488694;PAX6:-0.559605529265;SMAD1..7,9:-0.579551391476;SNAI1..3:-0.585779283471;NKX3-2:-0.588656185859;ATF2:-0.614811651418;AIRE:-0.665024392058;IRF7:-0.678393478933;ATF4:-0.682875967622;FOXD3:-0.687929991044;VSX1,2:-0.688321421804;MYOD1:-0.690312501585;ATF5_CREB3:-0.701236861617;RFX2..5_RFXANK_RFXAP:-0.711319835727;LMO2:-0.718629177695;IRF1,2:-0.745918939772;FOX{D1,D2}:-0.765285121505;SREBF1,2:-0.775300297221;FOXP1:-0.791258589967;EVI1:-0.79210665047;POU6F1:-0.828157077711;PITX1..3:-0.838974368791;ZEB1:-0.927428625809;DBP:-0.940874370096;CDX1,2,4:-1.09358491256;TLX2:-1.11653809968;ZBTB16:-1.17060038877;IKZF2:-1.17104382507;FOXN1:-1.26372439609
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11493-119E8;search_select_hide=table117:FF:11493-119E8
}}
}}

Latest revision as of 18:04, 4 June 2020

Name:Meningeal Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11320
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemeninges
dev stageNA
sexNA
ageNA
cell typemeningeal cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1405
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004942
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11320 CAGE DRX008341 DRR009213
Accession ID Hg19

Library idBAMCTSS
CNhs11320 DRZ000638 DRZ002023
Accession ID Hg38

Library idBAMCTSS
CNhs11320 DRZ011988 DRZ013373
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004942
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GCCAAT sRNA-Seq DRX037168 DRR041534
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GCCAAT DRZ007176


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.191
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.292
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0462
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0102
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.271
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0462
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.161
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.338
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.373
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.029
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.64
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.58
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0462
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.278
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.161
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.158
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11320

Jaspar motifP-value
MA0002.20.811
MA0003.10.7
MA0004.10.457
MA0006.10.302
MA0007.10.101
MA0009.10.437
MA0014.10.945
MA0017.10.926
MA0018.20.0684
MA0019.10.299
MA0024.11.92501e-6
MA0025.10.312
MA0027.10.498
MA0028.10.197
MA0029.10.694
MA0030.10.433
MA0031.10.219
MA0035.20.464
MA0038.12.37812e-4
MA0039.20.0783
MA0040.10.195
MA0041.10.24
MA0042.10.413
MA0043.10.0456
MA0046.10.0234
MA0047.20.32
MA0048.10.103
MA0050.12.51615e-7
MA0051.10.00247
MA0052.10.102
MA0055.10.00887
MA0057.10.598
MA0058.10.686
MA0059.10.574
MA0060.19.23801e-15
MA0061.10.0186
MA0062.20.881
MA0065.20.302
MA0066.10.826
MA0067.10.00101
MA0068.10.517
MA0069.10.631
MA0070.10.0169
MA0071.10.81
MA0072.10.973
MA0073.10.971
MA0074.10.547
MA0076.10.439
MA0077.10.266
MA0078.10.735
MA0079.20.68
MA0080.20.0898
MA0081.10.888
MA0083.17.51698e-4
MA0084.10.88
MA0087.10.547
MA0088.10.202
MA0090.14.48243e-4
MA0091.10.645
MA0092.10.82
MA0093.10.463
MA0099.21.2176e-7
MA0100.10.228
MA0101.10.401
MA0102.29.04985e-4
MA0103.16.08167e-4
MA0104.20.962
MA0105.10.0601
MA0106.10.525
MA0107.10.128
MA0108.20.00932
MA0111.10.129
MA0112.20.511
MA0113.10.254
MA0114.10.696
MA0115.10.559
MA0116.10.275
MA0117.10.33
MA0119.10.7
MA0122.10.585
MA0124.10.166
MA0125.10.496
MA0131.10.918
MA0135.10.157
MA0136.10.306
MA0137.20.858
MA0138.20.106
MA0139.10.835
MA0140.10.326
MA0141.10.734
MA0142.10.243
MA0143.10.563
MA0144.10.893
MA0145.10.826
MA0146.10.116
MA0147.10.972
MA0148.10.187
MA0149.10.763
MA0150.10.841
MA0152.10.842
MA0153.10.528
MA0154.10.914
MA0155.10.382
MA0156.10.567
MA0157.10.401
MA0159.10.115
MA0160.10.816
MA0162.10.117
MA0163.10.236
MA0164.10.959
MA0258.10.118
MA0259.10.839



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11320

Novel motifP-value
10.0781
100.0187
1000.75
1010.585
1020.204
1030.194
1040.797
1050.0584
1060.206
1070.75
1080.266
1090.529
110.862
1100.179
1110.572
1120.171
1130.234
1140.461
1150.174
1160.922
1170.681
1180.0767
1190.719
120.604
1200.968
1210.572
1220.999
1233.33425e-4
1240.71
1250.191
1260.363
1270.572
1280.243
1290.409
130.877
1300.00994
1310.518
1320.836
1330.769
1340.121
1350.832
1360.902
1370.1
1380.497
1390.00398
140.451
1400.698
1410.807
1420.904
1430.505
1440.305
1450.777
1460.0243
1470.381
1480.0636
1490.585
150.478
1500.286
1510.235
1520.952
1530.482
1540.0295
1550.0607
1560.766
1570.298
1580.103
1590.734
160.559
1600.267
1610.935
1620.356
1630.455
1640.0114
1650.0962
1660.575
1670.0614
1680.93
1690.252
170.891
180.72
190.303
20.628
200.499
210.86
220.135
230.632
240.255
250.578
260.817
270.424
280.24
290.193
30.216
300.0311
310.448
320.582
330.309
340.171
350.0693
360.958
370.288
380.71
390.44
40.871
400.143
410.991
420.905
430.267
440.0875
450.354
460.5
470.954
480.86
490.375
50.381
500.278
510.831
520.511
530.164
540.93
550.459
560.749
570.879
580.0509
590.197
60.393
600.302
610.928
620.0636
630.44
640.954
650.654
660.00888
670.288
680.432
690.767
70.936
700.0149
710.251
720.101
730.998
740.984
750.195
760.201
770.449
780.783
790.522
80.985
800.357
810.0535
820.00516
830.698
840.0161
850.134
860.232
870.296
880.474
890.96
90.119
900.0509
910.23
920.159
930.887
940.97
950.592
960.286
970.118
980.462
990.00278



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11320


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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