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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005087
|DRA_sample_Accession=CAGE@SAMD00005087
|accession_numbers=CAGE;DRX008365;DRR009237;DRZ000662;DRZ002047
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005087
|accession_numbers=CAGE;DRX008365;DRR009237;DRZ000662;DRZ002047;DRZ012012;DRZ013397
|accession_numbers_RNASeq=sRNA-Seq;DRX037120;DRR041486;DRZ007128
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.72!51.28!FOXS1;;chr2:45236540..45236577,-!p1@SIX2!1.68!46.97!SIX2;;chr6:126070769..126070801,+!p1@HEY2!1.59!43.13!HEY2;;chr11:46299199..46299233,+!p1@CREB3L1!1.50!153.12!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.45!99.92!SIX1;;chr6:19837592..19837621,+!p1@ID4!1.38!136.11!ID4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.37!ZBED1;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.81!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.16!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.30!FOXC2;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.10!TBX20;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.92!CREB3L1;;chr1:40105299..40105326,-!p1@HEYL!1.17!13.66!HEYL;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr2:45236579..45236596,-!p2@SIX2!1.09!11.26!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.07!29.95!TWIST1;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.38!PRDM8;;chr1:170633262..170633285,+!p3@PRRX1!1.06!11.98!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.54!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.05!11.74!MSC;;chr19:47523058..47523114,+!p1@NPAS1!1.04!10.06!NPAS1;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.82!PAWR;;chr8:72756267..72756296,-!p4@MSC!1.02!14.14!MSC;;chr6:126070748..126070768,+!p2@HEY2!1.01!9.35!HEY2;;chr6:1389789..1389821,+!p1@FOXF2!0.98!11.98!FOXF2;;chr8:72756667..72756736,-!p2@MSC!0.97!13.18!MSC;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.39!TBX1;;chr6:126102292..126102329,+!p3@NCOA7!0.95!26.84!NCOA7;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.38!ZFP106;;chr18:19749541..19749557,+!p1@GATA6!0.93!24.44!GATA6;;chr8:72756063..72756125,-!p1@MSC!0.93!15.58!MSC;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.43!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.92!81.95!AHR;;chr11:65686802..65686818,+!p6@DRAP1!0.92!12.94!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!0.91!9.35!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.90!37.86!HIF1A;;chr6:10415276..10415341,-!p2@TFAP2A!0.89!8.39!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.95!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.88!12.46!NR2F2;;chr8:72756213..72756243,-!p5@MSC!0.85!7.91!MSC;;chr15:100106670..100106697,+!p4@MEF2A!0.84!10.06!MEF2A;;chr9:132427883..132427951,+!p2@PRRX2!0.84!5.99!PRRX2;;chr14:62162258..62162269,+!p2@HIF1A!0.83!60.15!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.81!69.97!MLLT11;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.63!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.20!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.34!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.27!FOXC2;;chr21:30671690..30671762,+!p2@BACH1!0.79!18.93!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.79!13.18!NR2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.79!9.11!FOXC1;;chr8:49833948..49833973,-!p2@SNAI2!0.78!35.22!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.78!7.67!NFIX;;chr12:80085120..80085156,-!p14@PAWR!0.78!5.03!PAWR;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.82!NR2F2;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.35!RUNX3;;chr7:44143978..44143989,+!p2@AEBP1!0.76!9.11!AEBP1;;chr6:126102339..126102351,+!p12@NCOA7!0.76!4.79!NCOA7;;chr15:96876966..96877017,+!p12@NR2F2!0.75!6.95!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.74!23.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.74!5.99!NCOA7;;chr8:72756380..72756427,-!p8@MSC!0.74!4.55!MSC;;chr8:73921136..73921151,+!p2@TERF1!0.73!6.95!TERF1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.50!TWIST1;;chr2:200323414..200323455,-!p1@SATB2!0.72!9.82!SATB2;;chr7:17338324..17338341,+!p3@AHR!0.71!15.34!AHR;;chr15:96869222..96869251,+!p18@NR2F2!0.71!5.03!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.07!IRX2;;chr14:37131058..37131139,+!p1@PAX9!0.71!4.07!PAX9;;chr5:158526917..158526932,-!p1@EBF1!0.70!11.02!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.70!5.51!NFIX;;chr6:126240380..126240430,+!p2@NCOA7!0.69!11.26!NCOA7;;chr1:935467..935484,-!p1@HES4!0.68!18.93!HES4;;chr2:74229812..74229867,+!p1@TET3!0.68!10.54!TET3;;chr2:192015701..192015743,-!p1@STAT4!0.68!5.51!STAT4;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.83!ZNF668;;chr11:65687362..65687436,+!p3@DRAP1!0.67!18.93!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.18!AHRR;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.70!TBX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr14:61116168..61116180,-!p2@SIX1!0.67!4.31!SIX1;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.63!GLI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.66!6.71!CREB3L2;;chr6:10412600..10412637,-!p1@TFAP2A!0.66!6.47!TFAP2A;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr11:65687243..65687276,+!p8@DRAP1!0.66!5.03!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.79!DRAP1;;chr2:45236829..45236840,-!p3@SIX2!0.66!3.59!SIX2;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.21!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.65!5.27!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.65!5.03!NR2F2;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.47!SNAI2;;chr1:170632723..170632739,+!p8@PRRX1!0.64!3.35!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.35!SOX11;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.63!37.14!ZNF595;;chr11:65686952..65686975,+!p5@DRAP1!0.63!20.85!DRAP1;;chr2:191878874..191878938,-!p1@STAT1!0.62!207.99!STAT1;;chr9:35732647..35732678,+!p2@CREB3!0.61!20.13!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.59!NCOA7;;chr2:45236648..45236659,-!p5@SIX2!0.61!3.12!SIX2;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.12!ATOH8;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!32.11!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!0.60!9.11!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.60!5.51!FOXD1;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.03!ZNF702P;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.03!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!5.03!TSHZ3;;chr5:139487608..139487663,+!p3@PURA!0.59!6.95!PURA;;chr2:185463247..185463263,+!p1@ZNF804A!0.59!5.75!ZNF804A;;chr2:200322654..200322707,-!p2@SATB2!0.59!4.55!SATB2;;chr7:44143997..44144008,+!p3@AEBP1!0.59!3.83!AEBP1;;chr8:25902876..25902936,-!p1@EBF2!0.59!2.88!EBF2;;chr8:72755987..72756002,-!p7@MSC!0.59!2.88!MSC;;chr22:19746969..19746987,+!p2@TBX1!0.59!2.88!TBX1;;chr3:147111198..147111225,+!p4@ZIC1!0.59!2.88!ZIC1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.87!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr8:72756023..72756055,-!p6@MSC!0.57!3.59!MSC;;chr18:19749386..19749404,+!p2@GATA6!0.56!4.07!GATA6;;chrX:66763856..66763896,+!p1@AR!0.56!4.07!AR;;chr1:170632477..170632506,+!p6@PRRX1!0.56!2.64!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.56!2.64!PURA;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.64!CREB3L1;;chr1:935398..935465,-!p2@HES4!0.55!5.99!HES4;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.59!TEAD1;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.35!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.54!557.61!ID3;;chr14:62162224..62162254,+!p1@HIF1A!0.54!455.77!HIF1A;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.23!SMARCD3;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.35!STAT1;;chr10:63809106..63809127,+!p1@ARID5B!0.53!41.69!ARID5B;;chr3:147110055..147110129,-!p1@ZIC4!0.53!2.40!ZIC4;;chr3:147111231..147111281,+!p3@ZIC1!0.53!2.40!ZIC1;;chr15:96869165..96869183,+!p20@NR2F2!0.53!2.40!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.53!2.40!NR2F2;;chr19:13135582..13135600,+!p3@NFIX!0.53!2.40!NFIX;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.40!MAFK;;chr7:35293665..35293680,-!p2@TBX20!0.53!2.40!TBX20;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.40!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.53!2.40!TBX15;;chr12:80084303..80084332,-!p1@PAWR!0.52!17.25!PAWR;;chr12:96588368..96588394,+!p3@ELK3!0.52!7.43!ELK3;;chr12:57914286..57914304,-!p1@DDIT3!0.51!106.87!DDIT3;;chrX:106960180..106960197,-!p2@TSC22D3!0.51!10.54!TSC22D3;;chr10:63809134..63809145,+!p6@ARID5B!0.51!6.23!ARID5B;;chr19:56152332..56152347,+!p4@ZNF580!0.51!5.99!ZNF580;;chr12:66218443..66218461,+!p8@HMGA2!0.51!3.12!HMGA2;;chr9:4300050..4300118,-!p1@GLIS3!0.50!18.45!GLIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.88!MLLT11;;chrX:85403445..85403479,+!p2@DACH2!0.50!2.16!DACH2;;chr2:100721881..100721904,-!p6@AFF3!0.50!2.16!AFF3;;chr8:72756194..72756208,-!p9@MSC!0.50!2.16!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.50!2.16!RUNX1T1;;chr15:100106705..100106716,+!p10@MEF2A!0.50!2.16!MEF2A;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.16!FOXC2;;chr2:46524537..46524553,+!p1@EPAS1!0.49!280.12!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.49!24.68!NR2F2;;chr18:19749517..19749531,+!p3@GATA6!0.49!4.31!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.49!2.40!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.48!31.15!NCOR2;;chr1:151032782..151032801,+!p4@MLLT11!0.48!4.79!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.83!MLLT11;;chrX:66763815..66763854,+!p2@AR!0.48!2.88!AR;;chr3:185826286..185826318,-!p5@ETV5!0.48!2.40!ETV5;;chr16:73093174..73093209,-!p3@ZFHX3!0.47!2.88!ZFHX3;;chr18:56531584..56531646,+!p4@ZNF532!0.47!2.88!ZNF532;;chr15:83953397..83953425,-!p1@BNC1!0.47!2.40!BNC1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.46!188.58!TAX1BP3;;chr15:96873921..96873946,+!p1@NR2F2!0.46!73.33!NR2F2;;chrX:128657457..128657475,-!p1@SMARCA1!0.46!29.95!SMARCA1;;chr15:96875041..96875052,+!p17@NR2F2!0.46!3.12!NR2F2;;chr16:67881588..67881612,-!p2@CENPT!0.46!2.88!CENPT;;chr2:45236809..45236823,-!p4@SIX2!0.46!1.92!SIX2;;chr1:170632683..170632696,+!p12@PRRX1!0.46!1.92!PRRX1;;chr11:65480222..65480241,+!p4@KAT5!0.46!1.92!KAT5;;chr12:66218420..66218439,+!p12@HMGA2!0.46!1.92!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.46!1.92!EBF1;;chr6:1612300..1612324,+!p3@FOXC1!0.46!1.92!FOXC1;;chr8:72756251..72756262,-!p12@MSC!0.46!1.92!MSC;;chr8:77593474..77593612,+!p1@ZFHX4!0.45!10.30!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.45!7.19!RCOR3;;chr1:158979851..158979865,+!p5@IFI16!0.45!5.03!IFI16;;chrX:48900782..48900793,-!p3@TFE3!0.45!4.07!TFE3;;chr6:85474299..85474324,-!p1@TBX18!0.45!3.83!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.45!3.83!NFIX;;chr15:96881221..96881240,+!p19@NR2F2!0.45!2.64!NR2F2;;chr7:17338239..17338262,+!p2@AHR!0.44!17.97!AHR;;chr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|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.72!51.28!FOXS1;;chr2:45236540..45236577,-!p1@SIX2!1.68!46.97!SIX2;;chr6:126070769..126070801,+!p1@HEY2!1.59!43.13!HEY2;;chr11:46299199..46299233,+!p1@CREB3L1!1.50!153.12!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.45!99.92!SIX1;;chr6:19837592..19837621,+!p1@ID4!1.38!136.11!ID4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.37!ZBED1;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.81!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.16!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.30!FOXC2;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.10!TBX20;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.92!CREB3L1;;chr1:40105299..40105326,-!p1@HEYL!1.17!13.66!HEYL;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr2:45236579..45236596,-!p2@SIX2!1.09!11.26!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.07!29.95!TWIST1;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.38!PRDM8;;chr1:170633262..170633285,+!p3@PRRX1!1.06!11.98!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.54!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.05!11.74!MSC;;chr19:47523058..47523114,+!p1@NPAS1!1.04!10.06!NPAS1;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.82!PAWR;;chr8:72756267..72756296,-!p4@MSC!1.02!14.14!MSC;;chr6:126070748..126070768,+!p2@HEY2!1.01!9.35!HEY2;;chr6:1389789..1389821,+!p1@FOXF2!0.98!11.98!FOXF2;;chr8:72756667..72756736,-!p2@MSC!0.97!13.18!MSC;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.39!TBX1;;chr6:126102292..126102329,+!p3@NCOA7!0.95!26.84!NCOA7;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.38!ZFP106;;chr18:19749541..19749557,+!p1@GATA6!0.93!24.44!GATA6;;chr8:72756063..72756125,-!p1@MSC!0.93!15.58!MSC;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.43!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.92!81.95!AHR;;chr11:65686802..65686818,+!p6@DRAP1!0.92!12.94!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!0.91!9.35!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.90!37.86!HIF1A;;chr6:10415276..10415341,-!p2@TFAP2A!0.89!8.39!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.95!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.88!12.46!NR2F2;;chr8:72756213..72756243,-!p5@MSC!0.85!7.91!MSC;;chr15:100106670..100106697,+!p4@MEF2A!0.84!10.06!MEF2A;;chr9:132427883..132427951,+!p2@PRRX2!0.84!5.99!PRRX2;;chr14:62162258..62162269,+!p2@HIF1A!0.83!60.15!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.81!69.97!MLLT11;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.63!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.20!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.34!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.27!FOXC2;;chr21:30671690..30671762,+!p2@BACH1!0.79!18.93!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.79!13.18!NR2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.79!9.11!FOXC1;;chr8:49833948..49833973,-!p2@SNAI2!0.78!35.22!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.78!7.67!NFIX;;chr12:80085120..80085156,-!p14@PAWR!0.78!5.03!PAWR;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.82!NR2F2;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.35!RUNX3;;chr7:44143978..44143989,+!p2@AEBP1!0.76!9.11!AEBP1;;chr6:126102339..126102351,+!p12@NCOA7!0.76!4.79!NCOA7;;chr15:96876966..96877017,+!p12@NR2F2!0.75!6.95!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.74!23.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.74!5.99!NCOA7;;chr8:72756380..72756427,-!p8@MSC!0.74!4.55!MSC;;chr8:73921136..73921151,+!p2@TERF1!0.73!6.95!TERF1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.50!TWIST1;;chr2:200323414..200323455,-!p1@SATB2!0.72!9.82!SATB2;;chr7:17338324..17338341,+!p3@AHR!0.71!15.34!AHR;;chr15:96869222..96869251,+!p18@NR2F2!0.71!5.03!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.07!IRX2;;chr14:37131058..37131139,+!p1@PAX9!0.71!4.07!PAX9;;chr5:158526917..158526932,-!p1@EBF1!0.70!11.02!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.70!5.51!NFIX;;chr6:126240380..126240430,+!p2@NCOA7!0.69!11.26!NCOA7;;chr1:935467..935484,-!p1@HES4!0.68!18.93!HES4;;chr2:74229812..74229867,+!p1@TET3!0.68!10.54!TET3;;chr2:192015701..192015743,-!p1@STAT4!0.68!5.51!STAT4;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.83!ZNF668;;chr11:65687362..65687436,+!p3@DRAP1!0.67!18.93!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.18!AHRR;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.70!TBX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr14:61116168..61116180,-!p2@SIX1!0.67!4.31!SIX1;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.63!GLI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.66!6.71!CREB3L2;;chr6:10412600..10412637,-!p1@TFAP2A!0.66!6.47!TFAP2A;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr11:65687243..65687276,+!p8@DRAP1!0.66!5.03!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.79!DRAP1;;chr2:45236829..45236840,-!p3@SIX2!0.66!3.59!SIX2;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.21!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.65!5.27!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.65!5.03!NR2F2;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.47!SNAI2;;chr1:170632723..170632739,+!p8@PRRX1!0.64!3.35!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.35!SOX11;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.63!37.14!ZNF595;;chr11:65686952..65686975,+!p5@DRAP1!0.63!20.85!DRAP1;;chr2:191878874..191878938,-!p1@STAT1!0.62!207.99!STAT1;;chr9:35732647..35732678,+!p2@CREB3!0.61!20.13!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.59!NCOA7;;chr2:45236648..45236659,-!p5@SIX2!0.61!3.12!SIX2;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.12!ATOH8;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!32.11!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!0.60!9.11!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.60!5.51!FOXD1;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.03!ZNF702P;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.03!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!5.03!TSHZ3;;chr5:139487608..139487663,+!p3@PURA!0.59!6.95!PURA;;chr2:185463247..185463263,+!p1@ZNF804A!0.59!5.75!ZNF804A;;chr2:200322654..200322707,-!p2@SATB2!0.59!4.55!SATB2;;chr7:44143997..44144008,+!p3@AEBP1!0.59!3.83!AEBP1;;chr8:25902876..25902936,-!p1@EBF2!0.59!2.88!EBF2;;chr8:72755987..72756002,-!p7@MSC!0.59!2.88!MSC;;chr22:19746969..19746987,+!p2@TBX1!0.59!2.88!TBX1;;chr3:147111198..147111225,+!p4@ZIC1!0.59!2.88!ZIC1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.87!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr8:72756023..72756055,-!p6@MSC!0.57!3.59!MSC;;chr18:19749386..19749404,+!p2@GATA6!0.56!4.07!GATA6;;chrX:66763856..66763896,+!p1@AR!0.56!4.07!AR;;chr1:170632477..170632506,+!p6@PRRX1!0.56!2.64!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.56!2.64!PURA;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.64!CREB3L1;;chr1:935398..935465,-!p2@HES4!0.55!5.99!HES4;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.59!TEAD1;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.35!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.54!557.61!ID3;;chr14:62162224..62162254,+!p1@HIF1A!0.54!455.77!HIF1A;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.23!SMARCD3;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.35!STAT1;;chr10:63809106..63809127,+!p1@ARID5B!0.53!41.69!ARID5B;;chr3:147110055..147110129,-!p1@ZIC4!0.53!2.40!ZIC4;;chr3:147111231..147111281,+!p3@ZIC1!0.53!2.40!ZIC1;;chr15:96869165..96869183,+!p20@NR2F2!0.53!2.40!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.53!2.40!NR2F2;;chr19:13135582..13135600,+!p3@NFIX!0.53!2.40!NFIX;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.40!MAFK;;chr7:35293665..35293680,-!p2@TBX20!0.53!2.40!TBX20;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.40!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.53!2.40!TBX15;;chr12:80084303..80084332,-!p1@PAWR!0.52!17.25!PAWR;;chr12:96588368..96588394,+!p3@ELK3!0.52!7.43!ELK3;;chr12:57914286..57914304,-!p1@DDIT3!0.51!106.87!DDIT3;;chrX:106960180..106960197,-!p2@TSC22D3!0.51!10.54!TSC22D3;;chr10:63809134..63809145,+!p6@ARID5B!0.51!6.23!ARID5B;;chr19:56152332..56152347,+!p4@ZNF580!0.51!5.99!ZNF580;;chr12:66218443..66218461,+!p8@HMGA2!0.51!3.12!HMGA2;;chr9:4300050..4300118,-!p1@GLIS3!0.50!18.45!GLIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.88!MLLT11;;chrX:85403445..85403479,+!p2@DACH2!0.50!2.16!DACH2;;chr2:100721881..100721904,-!p6@AFF3!0.50!2.16!AFF3;;chr8:72756194..72756208,-!p9@MSC!0.50!2.16!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.50!2.16!RUNX1T1;;chr15:100106705..100106716,+!p10@MEF2A!0.50!2.16!MEF2A;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.16!FOXC2;;chr2:46524537..46524553,+!p1@EPAS1!0.49!280.12!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.49!24.68!NR2F2;;chr18:19749517..19749531,+!p3@GATA6!0.49!4.31!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.49!2.40!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.48!31.15!NCOR2;;chr1:151032782..151032801,+!p4@MLLT11!0.48!4.79!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.83!MLLT11;;chrX:66763815..66763854,+!p2@AR!0.48!2.88!AR;;chr3:185826286..185826318,-!p5@ETV5!0.48!2.40!ETV5;;chr16:73093174..73093209,-!p3@ZFHX3!0.47!2.88!ZFHX3;;chr18:56531584..56531646,+!p4@ZNF532!0.47!2.88!ZNF532;;chr15:83953397..83953425,-!p1@BNC1!0.47!2.40!BNC1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.46!188.58!TAX1BP3;;chr15:96873921..96873946,+!p1@NR2F2!0.46!73.33!NR2F2;;chrX:128657457..128657475,-!p1@SMARCA1!0.46!29.95!SMARCA1;;chr15:96875041..96875052,+!p17@NR2F2!0.46!3.12!NR2F2;;chr16:67881588..67881612,-!p2@CENPT!0.46!2.88!CENPT;;chr2:45236809..45236823,-!p4@SIX2!0.46!1.92!SIX2;;chr1:170632683..170632696,+!p12@PRRX1!0.46!1.92!PRRX1;;chr11:65480222..65480241,+!p4@KAT5!0.46!1.92!KAT5;;chr12:66218420..66218439,+!p12@HMGA2!0.46!1.92!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.46!1.92!EBF1;;chr6:1612300..1612324,+!p3@FOXC1!0.46!1.92!FOXC1;;chr8:72756251..72756262,-!p12@MSC!0.46!1.92!MSC;;chr8:77593474..77593612,+!p1@ZFHX4!0.45!10.30!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.45!7.19!RCOR3;;chr1:158979851..158979865,+!p5@IFI16!0.45!5.03!IFI16;;chrX:48900782..48900793,-!p3@TFE3!0.45!4.07!TFE3;;chr6:85474299..85474324,-!p1@TBX18!0.45!3.83!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.45!3.83!NFIX;;chr15:96881221..96881240,+!p19@NR2F2!0.45!2.64!NR2F2;;chr7:17338239..17338262,+!p2@AHR!0.44!17.97!AHR;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11549-120C1
|id=FF:11549-120C1
|is_a=EFO:0002091;;FF:0000117
|is_a=EFO:0002091;;FF:0000117
|is_obsolete=
|is_obsolete=
|library_id=CNhs11350
|library_id=CNhs11350
|library_id_phase_based=1:CNhs11350
|library_id_phase_based=2:CNhs11350
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11549
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ATGTCA.11549
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11549
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ATGTCA.11549
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11350,LSID769,release014,COMPLETED
|profile_hcage=CNhs11350,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10008,,,
|profile_srnaseq=SRhi10008,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=HMGA1,2:1.66184916461;IKZF1:1.54733124096;NKX3-1:1.47046998171;ZIC1..3:1.24806920947;MYBL2:1.24502300039;NR3C1:1.22467291826;HES1:1.22119182884;GLI1..3:1.18462139717;TAL1_TCF{3,4,12}:1.14726439531;NFE2L1:1.10674838686;GTF2A1,2:1.08913496563;UFEwm:1.07914780032;EVI1:1.05813127575;MAFB:1.05423588814;PPARG:1.05194143101;TEAD1:1.03473751579;SRF:1.02916860462;NKX2-2,8:0.99525593075;ONECUT1,2:0.98087354021;TEF:0.928565957373;ALX4:0.832582924933;HOX{A5,B5}:0.831201671534;ZBTB6:0.798181934334;LHX3,4:0.74944122043;AIRE:0.738762602787;FOXL1:0.708214868225;EN1,2:0.682293115374;NFATC1..3:0.671927048483;NKX3-2:0.631383568276;ESR1:0.620876566018;HIF1A:0.610996898121;TP53:0.604569709592;GFI1B:0.588877788999;SMAD1..7,9:0.577034425548;HMX1:0.564399337869;ZNF423:0.559042620404;STAT5{A,B}:0.557029147454;TFCP2:0.555173733443;PRDM1:0.547319266437;ZNF384:0.544845088595;EBF1:0.542186144861;GZF1:0.538369386962;SOX17:0.536730600499;TLX1..3_NFIC{dimer}:0.524564678792;HOX{A4,D4}:0.523947672612;KLF4:0.510993108632;NFE2L2:0.485627338342;SREBF1,2:0.48238173756;MAZ:0.463027603898;NFIX:0.419131567758;GTF2I:0.414935513808;XBP1:0.405521141836;GATA4:0.404279983916;NRF1:0.386945482659;POU5F1:0.372655484219;TBX4,5:0.365737292212;HSF1,2:0.363955191329;TFAP4:0.3567377052;FOXA2:0.354238640785;HAND1,2:0.332500953637;ZNF148:0.322594232665;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313855993896;MEF2{A,B,C,D}:0.309926042678;MTE{core}:0.300008816477;ATF6:0.294489669171;GCM1,2:0.288013357179;PAX8:0.253389833423;NHLH1,2:0.245737088722;ZNF143:0.241898307955;ELK1,4_GABP{A,B1}:0.219549109657;MZF1:0.212718505466;VSX1,2:0.203438663607;HIC1:0.195393017816;NR6A1:0.195268310549;BACH2:0.17903094124;HLF:0.178017469658;NANOG{mouse}:0.117040917163;PAX4:0.1158926046;LEF1_TCF7_TCF7L1,2:0.0938733200256;MYB:0.06875130486;TOPORS:0.0588735534698;XCPE1{core}:0.0570053909875;SPZ1:0.0535168962786;FOS_FOS{B,L1}_JUN{B,D}:0.0484971398626;HBP1_HMGB_SSRP1_UBTF:0.0478023583919;RXR{A,B,G}:0.0402512762028;CDX1,2,4:0.0260991978973;TFAP2B:0.00760059670965;FOSL2:0.00134117963763;POU6F1:-0.000593383057749;TFAP2{A,C}:-0.00102147343061;CRX:-0.0226214234488;ZFP161:-0.0504346890241;ARID5B:-0.0650289142659;RBPJ:-0.0679081275392;FOXP3:-0.0711431423323;PATZ1:-0.0713538864839;REST:-0.0715011589785;SP1:-0.0717106726614;HNF1A:-0.0720328543259;IKZF2:-0.0769204344673;YY1:-0.082289957367;GFI1:-0.0987522167389;AHR_ARNT_ARNT2:-0.102661605853;RXRA_VDR{dimer}:-0.105356633771;CDC5L:-0.117612649057;bHLH_family:-0.126323932929;FOX{I1,J2}:-0.136173888818;RFX1:-0.13857698963;PAX2:-0.139200639003;TFDP1:-0.143264003914;ZNF238:-0.14967168496;CEBPA,B_DDIT3:-0.156497355109;PAX6:-0.159892428276;SOX2:-0.176185860478;ZBTB16:-0.176457179423;TGIF1:-0.189112658688;POU3F1..4:-0.189942745716;NFE2:-0.191726089795;ESRRA:-0.203640519497;LMO2:-0.23449673498;EP300:-0.236787056923;RREB1:-0.241470313387;ELF1,2,4:-0.258397712826;OCT4_SOX2{dimer}:-0.28924255324;IRF1,2:-0.306106334461;ATF4:-0.310078335869;CREB1:-0.319396952823;MYFfamily:-0.320357128098;NR5A1,2:-0.32107130259;NKX2-1,4:-0.33145853294;NFKB1_REL_RELA:-0.338198736852;PDX1:-0.34793039096;PRRX1,2:-0.370825368386;T:-0.378708516568;POU1F1:-0.380346468979;NFY{A,B,C}:-0.408562961494;EGR1..3:-0.40931594979;FOXD3:-0.411008334552;E2F1..5:-0.411232055887;FOX{F1,F2,J1}:-0.411269341955;DBP:-0.425348226905;GATA6:-0.436206822635;MYOD1:-0.439287527814;NFIL3:-0.439358805349;JUN:-0.440890830993;FOXQ1:-0.442413214741;TBP:-0.442567554945;SOX{8,9,10}:-0.444466123338;SPI1:-0.456216892156;DMAP1_NCOR{1,2}_SMARC:-0.457405486428;FOXM1:-0.465887883887;ETS1,2:-0.477218245866;FOXO1,3,4:-0.486383052615;NKX2-3_NKX2-5:-0.486738953449;SNAI1..3:-0.487449211999;MED-1{core}:-0.498524389459;RUNX1..3:-0.499654405572;ATF2:-0.499941643843;ADNP_IRX_SIX_ZHX:-0.535633647045;IRF7:-0.548635441764;STAT2,4,6:-0.553487766779;SOX5:-0.56842766963;STAT1,3:-0.599592567277;MTF1:-0.609592021092;AR:-0.609618574301;HNF4A_NR2F1,2:-0.612235124849;SPIB:-0.645462374495;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.659809405511;RORA:-0.678615163353;PAX3,7:-0.686712704838;ZEB1:-0.690745276683;BPTF:-0.708161262342;NR1H4:-0.713896381523;ATF5_CREB3:-0.717931862577;RFX2..5_RFXANK_RFXAP:-0.736461403554;NANOG:-0.797849964092;HOXA9_MEIS1:-0.806292883971;FOX{D1,D2}:-0.825844946012;PAX5:-0.830219436729;FOXN1:-0.850713742806;PAX1,9:-0.898969291897;PITX1..3:-0.907694248641;FOXP1:-0.928877076903;CUX2:-0.930821797187;NKX6-1,2:-1.02668617455;BREu{core}:-1.07325871688;POU2F1..3:-1.14049924081;TLX2:-1.14359349875;ALX1:-1.23488842418;PBX1:-1.68975916297;HOX{A6,A7,B6,B7}:-2.0970165174
|top_motifs=HMGA1,2:1.66184916461;IKZF1:1.54733124096;NKX3-1:1.47046998171;ZIC1..3:1.24806920947;MYBL2:1.24502300039;NR3C1:1.22467291826;HES1:1.22119182884;GLI1..3:1.18462139717;TAL1_TCF{3,4,12}:1.14726439531;NFE2L1:1.10674838686;GTF2A1,2:1.08913496563;UFEwm:1.07914780032;EVI1:1.05813127575;MAFB:1.05423588814;PPARG:1.05194143101;TEAD1:1.03473751579;SRF:1.02916860462;NKX2-2,8:0.99525593075;ONECUT1,2:0.98087354021;TEF:0.928565957373;ALX4:0.832582924933;HOX{A5,B5}:0.831201671534;ZBTB6:0.798181934334;LHX3,4:0.74944122043;AIRE:0.738762602787;FOXL1:0.708214868225;EN1,2:0.682293115374;NFATC1..3:0.671927048483;NKX3-2:0.631383568276;ESR1:0.620876566018;HIF1A:0.610996898121;TP53:0.604569709592;GFI1B:0.588877788999;SMAD1..7,9:0.577034425548;HMX1:0.564399337869;ZNF423:0.559042620404;STAT5{A,B}:0.557029147454;TFCP2:0.555173733443;PRDM1:0.547319266437;ZNF384:0.544845088595;EBF1:0.542186144861;GZF1:0.538369386962;SOX17:0.536730600499;TLX1..3_NFIC{dimer}:0.524564678792;HOX{A4,D4}:0.523947672612;KLF4:0.510993108632;NFE2L2:0.485627338342;SREBF1,2:0.48238173756;MAZ:0.463027603898;NFIX:0.419131567758;GTF2I:0.414935513808;XBP1:0.405521141836;GATA4:0.404279983916;NRF1:0.386945482659;POU5F1:0.372655484219;TBX4,5:0.365737292212;HSF1,2:0.363955191329;TFAP4:0.3567377052;FOXA2:0.354238640785;HAND1,2:0.332500953637;ZNF148:0.322594232665;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313855993896;MEF2{A,B,C,D}:0.309926042678;MTE{core}:0.300008816477;ATF6:0.294489669171;GCM1,2:0.288013357179;PAX8:0.253389833423;NHLH1,2:0.245737088722;ZNF143:0.241898307955;ELK1,4_GABP{A,B1}:0.219549109657;MZF1:0.212718505466;VSX1,2:0.203438663607;HIC1:0.195393017816;NR6A1:0.195268310549;BACH2:0.17903094124;HLF:0.178017469658;NANOG{mouse}:0.117040917163;PAX4:0.1158926046;LEF1_TCF7_TCF7L1,2:0.0938733200256;MYB:0.06875130486;TOPORS:0.0588735534698;XCPE1{core}:0.0570053909875;SPZ1:0.0535168962786;FOS_FOS{B,L1}_JUN{B,D}:0.0484971398626;HBP1_HMGB_SSRP1_UBTF:0.0478023583919;RXR{A,B,G}:0.0402512762028;CDX1,2,4:0.0260991978973;TFAP2B:0.00760059670965;FOSL2:0.00134117963763;POU6F1:-0.000593383057749;TFAP2{A,C}:-0.00102147343061;CRX:-0.0226214234488;ZFP161:-0.0504346890241;ARID5B:-0.0650289142659;RBPJ:-0.0679081275392;FOXP3:-0.0711431423323;PATZ1:-0.0713538864839;REST:-0.0715011589785;SP1:-0.0717106726614;HNF1A:-0.0720328543259;IKZF2:-0.0769204344673;YY1:-0.082289957367;GFI1:-0.0987522167389;AHR_ARNT_ARNT2:-0.102661605853;RXRA_VDR{dimer}:-0.105356633771;CDC5L:-0.117612649057;bHLH_family:-0.126323932929;FOX{I1,J2}:-0.136173888818;RFX1:-0.13857698963;PAX2:-0.139200639003;TFDP1:-0.143264003914;ZNF238:-0.14967168496;CEBPA,B_DDIT3:-0.156497355109;PAX6:-0.159892428276;SOX2:-0.176185860478;ZBTB16:-0.176457179423;TGIF1:-0.189112658688;POU3F1..4:-0.189942745716;NFE2:-0.191726089795;ESRRA:-0.203640519497;LMO2:-0.23449673498;EP300:-0.236787056923;RREB1:-0.241470313387;ELF1,2,4:-0.258397712826;OCT4_SOX2{dimer}:-0.28924255324;IRF1,2:-0.306106334461;ATF4:-0.310078335869;CREB1:-0.319396952823;MYFfamily:-0.320357128098;NR5A1,2:-0.32107130259;NKX2-1,4:-0.33145853294;NFKB1_REL_RELA:-0.338198736852;PDX1:-0.34793039096;PRRX1,2:-0.370825368386;T:-0.378708516568;POU1F1:-0.380346468979;NFY{A,B,C}:-0.408562961494;EGR1..3:-0.40931594979;FOXD3:-0.411008334552;E2F1..5:-0.411232055887;FOX{F1,F2,J1}:-0.411269341955;DBP:-0.425348226905;GATA6:-0.436206822635;MYOD1:-0.439287527814;NFIL3:-0.439358805349;JUN:-0.440890830993;FOXQ1:-0.442413214741;TBP:-0.442567554945;SOX{8,9,10}:-0.444466123338;SPI1:-0.456216892156;DMAP1_NCOR{1,2}_SMARC:-0.457405486428;FOXM1:-0.465887883887;ETS1,2:-0.477218245866;FOXO1,3,4:-0.486383052615;NKX2-3_NKX2-5:-0.486738953449;SNAI1..3:-0.487449211999;MED-1{core}:-0.498524389459;RUNX1..3:-0.499654405572;ATF2:-0.499941643843;ADNP_IRX_SIX_ZHX:-0.535633647045;IRF7:-0.548635441764;STAT2,4,6:-0.553487766779;SOX5:-0.56842766963;STAT1,3:-0.599592567277;MTF1:-0.609592021092;AR:-0.609618574301;HNF4A_NR2F1,2:-0.612235124849;SPIB:-0.645462374495;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.659809405511;RORA:-0.678615163353;PAX3,7:-0.686712704838;ZEB1:-0.690745276683;BPTF:-0.708161262342;NR1H4:-0.713896381523;ATF5_CREB3:-0.717931862577;RFX2..5_RFXANK_RFXAP:-0.736461403554;NANOG:-0.797849964092;HOXA9_MEIS1:-0.806292883971;FOX{D1,D2}:-0.825844946012;PAX5:-0.830219436729;FOXN1:-0.850713742806;PAX1,9:-0.898969291897;PITX1..3:-0.907694248641;FOXP1:-0.928877076903;CUX2:-0.930821797187;NKX6-1,2:-1.02668617455;BREu{core}:-1.07325871688;POU2F1..3:-1.14049924081;TLX2:-1.14359349875;ALX1:-1.23488842418;PBX1:-1.68975916297;HOX{A6,A7,B6,B7}:-2.0970165174
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11549-120C1;search_select_hide=table117:FF:11549-120C1
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11350
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stagefetus
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005087
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11350 CAGE DRX008365 DRR009237
Accession ID Hg19

Library idBAMCTSS
CNhs11350 DRZ000662 DRZ002047
Accession ID Hg38

Library idBAMCTSS
CNhs11350 DRZ012012 DRZ013397
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005087
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.ATGTCA sRNA-Seq DRX037120 DRR041486
Accession ID Hg19

Library idBAMCTSS
SRhi10008.ATGTCA DRZ007128


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0722
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0634
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.477
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.13
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0577
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.387
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0879
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0271
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0933
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.159
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0151
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.158
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.242
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.662
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.428
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.428
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.499
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.705
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.684
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11350

Jaspar motifP-value
MA0002.20.467
MA0003.10.936
MA0004.10.788
MA0006.10.143
MA0007.10.594
MA0009.10.0458
MA0014.10.507
MA0017.10.181
MA0018.29.64296e-6
MA0019.10.242
MA0024.10.00831
MA0025.10.0017
MA0027.10.509
MA0028.10.734
MA0029.10.185
MA0030.10.167
MA0031.10.0263
MA0035.20.234
MA0038.10.39
MA0039.20.517
MA0040.10.563
MA0041.10.374
MA0042.10.628
MA0043.10.00309
MA0046.10.709
MA0047.20.42
MA0048.10.14
MA0050.13.61559e-5
MA0051.10.033
MA0052.10.205
MA0055.10.174
MA0057.10.149
MA0058.10.897
MA0059.10.621
MA0060.12.93026e-4
MA0061.10.0943
MA0062.20.00603
MA0065.20.154
MA0066.10.477
MA0067.10.0184
MA0068.10.0421
MA0069.10.238
MA0070.10.499
MA0071.10.655
MA0072.10.811
MA0073.10.572
MA0074.10.903
MA0076.10.287
MA0077.10.992
MA0078.10.692
MA0079.20.914
MA0080.27.5718e-9
MA0081.10.0192
MA0083.10.00197
MA0084.10.123
MA0087.10.904
MA0088.10.392
MA0090.12.00869e-5
MA0091.10.414
MA0092.10.409
MA0093.10.967
MA0099.20.266
MA0100.10.563
MA0101.10.00751
MA0102.25.62093e-4
MA0103.10.0148
MA0104.20.0286
MA0105.10.678
MA0106.10.296
MA0107.10.0167
MA0108.20.414
MA0111.10.0607
MA0112.20.0484
MA0113.10.602
MA0114.10.0408
MA0115.10.047
MA0116.10.643
MA0117.10.358
MA0119.10.229
MA0122.10.399
MA0124.10.995
MA0125.10.732
MA0131.10.677
MA0135.10.435
MA0136.16.71596e-9
MA0137.20.044
MA0138.20.607
MA0139.10.541
MA0140.10.72
MA0141.10.45
MA0142.10.14
MA0143.10.565
MA0144.10.388
MA0145.10.707
MA0146.10.772
MA0147.10.192
MA0148.10.624
MA0149.10.726
MA0150.10.448
MA0152.10.0619
MA0153.10.563
MA0154.10.408
MA0155.10.858
MA0156.12.58901e-7
MA0157.10.124
MA0159.10.491
MA0160.10.0311
MA0162.10.0194
MA0163.10.332
MA0164.10.837
MA0258.10.575
MA0259.10.728



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11350

Novel motifP-value
10.653
100.438
1000.661
1010.528
1020.261
1030.372
1040.895
1050.55
1060.549
1070.317
1080.796
1090.473
110.761
1100.946
1110.675
1120.448
1138.90759e-4
1140.343
1150.397
1160.412
1170.787
1180.719
1190.865
120.133
1200.204
1210.317
1220.333
1234.06178e-5
1240.136
1250.672
1260.511
1270.559
1280.432
1290.612
130.551
1300.237
1310.749
1320.523
1330.25
1340.161
1350.799
1360.692
1370.572
1380.262
1390.584
140.113
1400.949
1410.212
1420.342
1430.844
1440.748
1450.491
1460.863
1470.254
1480.436
1490.0141
150.752
1500.957
1510.719
1520.1
1530.536
1540.741
1550.0188
1560.667
1570.0641
1580.0155
1590.531
160.0212
1600.863
1610.434
1620.892
1630.766
1640.411
1650.629
1660.0525
1670.612
1680.304
1690.0323
170.962
180.0576
190.0435
20.666
200.882
210.0319
220.214
230.258
240.484
250.524
260.927
270.73
280.342
290.332
30.689
300.509
310.362
323.49966e-15
330.339
340.615
350.0613
360.0895
370.07
380.236
390.676
40.638
400.79
410.906
420.776
430.739
440.335
450.693
460.806
470.855
480.873
490.768
50.711
500.751
510.254
520.399
530.0295
540.932
550.277
560.821
570.614
580.191
590.0733
60.429
600.254
610.436
620.996
630.869
640.469
650.967
660.928
670.144
680.724
690.305
70.687
700.529
710.22
720.363
730.0308
740.536
750.172
760.583
770.0727
780.889
790.0605
80.325
800.975
810.907
820.8
830.602
840.0896
850.371
860.977
870.0722
880.514
890.0972
90.981
900.129
910.738
920.37
930.68
940.875
950.619
960.792
970.37
980.152
990.142



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11350


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000081 (blood cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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