FF:10038-101F2: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	medulla oblongata, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10645
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medulla oblongata
dev stage	18-64 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	7060209
catalog number	Cat:636562
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004766

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10645		CAGE		DRX008688		DRR009560

Accession ID Hg19

Library id		BAM		CTSS
CNhs10645		DRZ000985		DRZ002370

Accession ID Hg38

Library id		BAM		CTSS
CNhs10645		DRZ012335		DRZ013720

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.138
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.36
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0508
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.447
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.271
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0262
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0.0262
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.226
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.00675
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0262
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0508
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0508
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.21
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.55
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0508
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0584
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.148
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.21
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0963
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0262
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0508
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.0262
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0262
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0262
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.891
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0508
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.231
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.534
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0262
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0262
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0262
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.338
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0508
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.475
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0508
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0262
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.08
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.484
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0262
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0508
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.138
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0963
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.471
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.314
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.534
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0262
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.362
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.3
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0.0262
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0853
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.362
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0508
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0508
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.593
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0262
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.12
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.0742
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0742
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10645

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0156
MA0003.1	MA0003.1	0.445
MA0004.1	MA0004.1	0.366
MA0006.1	MA0006.1	0.691
MA0007.1	MA0007.1	0.332
MA0009.1	MA0009.1	0.162
MA0014.1	MA0014.1	0.65
MA0017.1	MA0017.1	0.016
MA0018.2	MA0018.2	0.0396
MA0019.1	MA0019.1	0.385
MA0024.1	MA0024.1	0.987
MA0025.1	MA0025.1	0.186
MA0027.1	MA0027.1	0.524
MA0028.1	MA0028.1	0.077
MA0029.1	MA0029.1	0.187
MA0030.1	MA0030.1	0.00887
MA0031.1	MA0031.1	0.301
MA0035.2	MA0035.2	0.132
MA0038.1	MA0038.1	0.017
MA0039.2	MA0039.2	0.623
MA0040.1	MA0040.1	0.182
MA0041.1	MA0041.1	0.102
MA0042.1	MA0042.1	0.502
MA0043.1	MA0043.1	0.351
MA0046.1	MA0046.1	0.563
MA0047.2	MA0047.2	0.627
MA0048.1	MA0048.1	0.0753
MA0050.1	MA0050.1	0.569
MA0051.1	MA0051.1	0.817
MA0052.1	MA0052.1	0.0456
MA0055.1	MA0055.1	9.32654e-4
MA0057.1	MA0057.1	0.899
MA0058.1	MA0058.1	0.489
MA0059.1	MA0059.1	0.0599
MA0060.1	MA0060.1	0.0577
MA0061.1	MA0061.1	0.00592
MA0062.2	MA0062.2	0.0223
MA0065.2	MA0065.2	0.00301
MA0066.1	MA0066.1	0.0134
MA0067.1	MA0067.1	0.705
MA0068.1	MA0068.1	0.21
MA0069.1	MA0069.1	0.639
MA0070.1	MA0070.1	0.0337
MA0071.1	MA0071.1	0.0555
MA0072.1	MA0072.1	0.98
MA0073.1	MA0073.1	0.701
MA0074.1	MA0074.1	0.187
MA0076.1	MA0076.1	0.187
MA0077.1	MA0077.1	0.027
MA0078.1	MA0078.1	0.935
MA0079.2	MA0079.2	0.244
MA0080.2	MA0080.2	1.16513e-4
MA0081.1	MA0081.1	0.104
MA0083.1	MA0083.1	0.792
MA0084.1	MA0084.1	0.229
MA0087.1	MA0087.1	0.122
MA0088.1	MA0088.1	0.143
MA0090.1	MA0090.1	0.377
MA0091.1	MA0091.1	0.546
MA0092.1	MA0092.1	0.401
MA0093.1	MA0093.1	0.46
MA0099.2	MA0099.2	1.63686e-9
MA0100.1	MA0100.1	0.624
MA0101.1	MA0101.1	0.0113
MA0102.2	MA0102.2	0.509
MA0103.1	MA0103.1	0.0766
MA0104.2	MA0104.2	0.251
MA0105.1	MA0105.1	8.13862e-6
MA0106.1	MA0106.1	0.0171
MA0107.1	MA0107.1	0.0102
MA0108.2	MA0108.2	1.25356e-4
MA0111.1	MA0111.1	0.373
MA0112.2	MA0112.2	0.00139
MA0113.1	MA0113.1	0.591
MA0114.1	MA0114.1	0.0151
MA0115.1	MA0115.1	0.483
MA0116.1	MA0116.1	0.00115
MA0117.1	MA0117.1	0.789
MA0119.1	MA0119.1	0.0672
MA0122.1	MA0122.1	0.415
MA0124.1	MA0124.1	0.593
MA0125.1	MA0125.1	0.117
MA0131.1	MA0131.1	0.773
MA0135.1	MA0135.1	0.00528
MA0136.1	MA0136.1	2.41919e-6
MA0137.2	MA0137.2	0.29
MA0138.2	MA0138.2	0.117
MA0139.1	MA0139.1	0.442
MA0140.1	MA0140.1	0.0757
MA0141.1	MA0141.1	0.0218
MA0142.1	MA0142.1	0.473
MA0143.1	MA0143.1	0.108
MA0144.1	MA0144.1	0.748
MA0145.1	MA0145.1	0.621
MA0146.1	MA0146.1	0.0291
MA0147.1	MA0147.1	0.118
MA0148.1	MA0148.1	0.468
MA0149.1	MA0149.1	0.00735
MA0150.1	MA0150.1	0.00502
MA0152.1	MA0152.1	0.903
MA0153.1	MA0153.1	0.675
MA0154.1	MA0154.1	0.0315
MA0155.1	MA0155.1	0.946
MA0156.1	MA0156.1	9.37318e-4
MA0157.1	MA0157.1	0.948
MA0159.1	MA0159.1	0.017
MA0160.1	MA0160.1	0.0901
MA0162.1	MA0162.1	0.183
MA0163.1	MA0163.1	1.1616e-9
MA0164.1	MA0164.1	0.556
MA0258.1	MA0258.1	0.0222
MA0259.1	MA0259.1	0.428

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10645

Novel motif	Logo	P-value
1	1	0.0208
10	10	0.0193
100	100	0.209
101	101	0.994
102	102	0.846
103	103	0.122
104	104	0.214
105	105	0.653
106	106	0.0809
107	107	0.261
108	108	0.815
109	109	0.011
11	11	0.012
110	110	0.0325
111	111	0.0267
112	112	0.345
113	113	0.606
114	114	0.0431
115	115	0.826
116	116	0.214
117	117	0.00647
118	118	0.0898
119	119	0.115
12	12	0.839
120	120	0.0754
121	121	0.921
122	122	0.548
123	123	0.49
124	124	0.157
125	125	0.277
126	126	0.126
127	127	0.447
128	128	0.264
129	129	0.478
13	13	0.00358
130	130	0.97
131	131	0.0396
132	132	0.679
133	133	0.00248
134	134	0.236
135	135	0.0765
136	136	0.0151
137	137	0.808
138	138	0.803
139	139	0.0496
14	14	0.879
140	140	0.113
141	141	0.26
142	142	0.854
143	143	0.00671
144	144	0.959
145	145	0.141
146	146	0.986
147	147	0.96
148	148	0.163
149	149	0.324
15	15	0.048
150	150	0.163
151	151	0.778
152	152	0.288
153	153	0.75
154	154	0.66
155	155	0.165
156	156	0.392
157	157	0.419
158	158	0.824
159	159	0.0384
16	16	0.0568
160	160	0.184
161	161	0.217
162	162	0.951
163	163	0.924
164	164	0.00495
165	165	0.148
166	166	0.896
167	167	0.219
168	168	0.982
169	169	0.0129
17	17	0.159
18	18	0.0845
19	19	0.392
2	2	0.746
20	20	0.0978
21	21	0.0654
22	22	0.454
23	23	0.633
24	24	0.205
25	25	0.554
26	26	1.66736e-4
27	27	0.873
28	28	0.813
29	29	0.00509
3	3	0.0236
30	30	0.372
31	31	0.957
32	32	0.0209
33	33	0.116
34	34	0.882
35	35	0.324
36	36	0.0915
37	37	0.0492
38	38	0.368
39	39	0.481
4	4	0.916
40	40	0.105
41	41	0.407
42	42	0.162
43	43	0.127
44	44	0.0397
45	45	0.974
46	46	0.026
47	47	0.0473
48	48	0.0412
49	49	0.152
5	5	0.567
50	50	0.615
51	51	0.444
52	52	0.956
53	53	0.755
54	54	0.581
55	55	0.472
56	56	0.576
57	57	0.18
58	58	0.336
59	59	0.197
6	6	0.661
60	60	0.191
61	61	0.0781
62	62	0.174
63	63	0.237
64	64	0.145
65	65	0.353
66	66	0.263
67	67	0.467
68	68	0.502
69	69	0.511
7	7	0.124
70	70	0.00697
71	71	0.00577
72	72	0.508
73	73	0.0854
74	74	0.518
75	75	0.0125
76	76	0.138
77	77	0.379
78	78	0.00144
79	79	0.128
8	8	0.0438
80	80	0.697
81	81	0.417
82	82	0.473
83	83	0.296
84	84	0.521
85	85	0.36
86	86	0.161
87	87	0.0185
88	88	0.827
89	89	0.328
9	9	0.815
90	90	0.0123
91	91	0.321
92	92	0.481
93	93	0.876
94	94	0.035
95	95	0.0454
96	96	0.994
97	97	0.833
98	98	0.179
99	99	0.902

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10645

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010038 human medulla oblongata - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004766
-|accession_numbers=CAGE;DRX008688;DRR009560;DRZ000985;DRZ002370
+|accession_numbers=CAGE;DRX008688;DRR009560;DRZ000985;DRZ002370;DRZ012335;DRZ013720
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.82!656.05!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.52!333.09!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.42!263.10!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.26!370.53!C11orf9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.18!149.84!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!2.04!108.23!OLIG2;;chr12:106976774..106976788,+!p1@RFX4!1.97!92.40!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.88!125.00!ZEB2;;chr12:26277817..26277863,-!p2@BHLHE41!1.88!98.80!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.85!70.36!ST18;;chr3:181429704..181429722,+!p1@SOX2!1.75!55.70!SOX2;;chr3:181429741..181429767,+!p2@SOX2!1.72!51.66!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.67!45.58!NKX6-2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.66!44.83!POU3F3;;chr21:34442540..34442560,+!p2@OLIG1!1.66!44.27!OLIG1;;chr16:1031762..1031781,+!p1@SOX8!1.64!42.41!SOX8;;chr19:46801639..46801699,+!p1@HIF3A!1.64!42.29!HIF3A;;chr4:57547454..57547469,-!p1@HOPX!1.63!41.48!HOPX;;chr9:114287433..114287513,+!p1@ZNF483!1.61!100.66!ZNF483;;chr10:48355030..48355090,+!p1@ZNF488!1.59!47.94!ZNF488;;chr12:54779511..54779577,-!p5@ZNF385A!1.57!35.95!ZNF385A;;chr6:19837592..19837621,+!p1@ID4!1.52!189.46!ID4;;chr12:106976678..106976708,+!p2@RFX4!1.47!28.38!RFX4;;chr12:26277956..26277980,-!p1@BHLHE41!1.45!94.76!BHLHE41;;chrY:21906594..21906622,-!p1@KDM5D!1.43!25.71!KDM5D;;chr1:40105299..40105326,-!p1@HEYL!1.42!25.58!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.21!ZBTB16;;chr2:177053386..177053402,+!p1@HOXD1!1.41!24.90!HOXD1;;chr19:13135386..13135435,+!p4@NFIX!1.41!24.71!NFIX;;chr14:33403881..33403924,+!p1@NPAS3!1.41!24.47!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.39!23.47!ZMAT4;;chr1:214161272..214161322,+!p1@PROX1!1.38!31.73!PROX1;;chr15:80696703..80696754,+!p1@ARNT2!1.38!30.12!ARNT2;;chr11:47400078..47400106,-!p1@SPI1!1.38!22.98!SPI1;;chr19:30863271..30863338,+!p1@ZNF536!1.37!22.60!ZNF536;;chr8:53322347..53322378,-!p2@ST18!1.37!22.54!ST18;;chr16:51185172..51185197,-!p1@SALL1!1.37!22.42!SALL1;;chr4:81118647..81118666,+!p1@PRDM8!1.36!28.87!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.35!24.34!HLF;;chr9:77112244..77112262,+!p1@RORB!1.33!23.04!RORB;;chr16:85932760..85932775,+!p1@IRF8!1.33!20.62!IRF8;;chr16:51185318..51185348,-!p2@SALL1!1.32!20.00!SALL1;;chr6:126070769..126070801,+!p1@HEY2!1.31!22.35!HEY2;;chr3:126076242..126076257,-!p1@KLF15!1.30!23.41!KLF15;;chr10:64134120..64134183,+!p1@ZNF365!1.28!21.55!ZNF365;;chr17:70117153..70117174,+!p1@SOX9!1.27!177.60!SOX9;;chr1:61548069..61548102,+!p3@NFIA!1.25!40.30!NFIA;;chr12:52437488..52437507,+!p2@NR4A1!1.25!16.83!NR4A1;;chr22:41763452..41763466,+!p2@TEF!1.25!16.64!TEF;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.64!HIF3A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.25!16.58!POU3F3;;chr2:68592406..68592424,+!p1@PLEK!1.25!16.58!PLEK;;chr20:62680984..62680999,-!p1@SOX18!1.24!21.55!SOX18;;chr19:57352109..57352153,-!p2@ZIM2!1.24!16.52!ZIM2;;chr12:26277929..26277955,-!p3@BHLHE41!1.23!22.91!BHLHE41;;chr11:8102846..8102892,+!p1@TUB!1.23!22.48!TUB;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.96!ZNF727;;chr2:145275982..145276003,-!p7@ZEB2!1.20!15.03!ZEB2;;chr13:79177674..79177701,-!p1@POU4F1!1.19!14.34!POU4F1;;chr14:33408072..33408114,+!p2@NPAS3!1.18!16.89!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!1.17!13.91!NFIX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr21:39870339..39870443,-!p1@ERG!1.16!13.35!ERG;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!12.98!KCNIP3;;chr3:52001396..52001425,-!p4@PCBP4!1.11!21.17!PCBP4;;chr7:27169801..27169844,-!p2@HOXA4!1.11!11.74!HOXA4;;chr11:113930291..113930339,+!p2@ZBTB16!1.10!18.82!ZBTB16;;chr10:111987079..111987115,+!p3@MXI1!1.10!16.02!MXI1;;chr20:21494654..21494678,-!p2@NKX2-2!1.10!11.61!NKX2-2;;chr14:21994337..21994442,-!p1@SALL2!1.09!31.17!SALL2;;chr2:166326200..166326216,+!p1@CSRNP3!1.09!16.52!CSRNP3;;chr17:7492684..7492778,-!p2@SOX15!1.08!23.29!SOX15;;chr2:95963120..95963136,+!p2@KCNIP3!1.08!11.12!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!1.08!11.12!ZIC1;;chr12:26277798..26277809,-!p5@BHLHE41!1.08!10.99!BHLHE41;;chr5:71803177..71803255,-!p1@ZNF366!1.07!10.80!ZNF366;;chr19:58545454..58545498,+!p1@ZSCAN1!1.07!10.62!ZSCAN1;;chr3:147127142..147127168,+!p1@ZIC1!1.07!10.62!ZIC1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.06!10.43!SMARCE1;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!23.91!ZBTB20;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.47!HEY1;;chr1:61547894..61547968,+!p2@NFIA!1.03!28.63!NFIA;;chr12:106976656..106976672,+!p4@RFX4!1.03!9.81!RFX4;;chr20:42574529..42574563,+!p3@TOX2!1.03!9.75!TOX2;;chr7:27142290..27142310,-!p1@HOXA2!1.03!9.69!HOXA2;;chr17:74137321..74137337,-!p1@FOXJ1!1.03!9.62!FOXJ1;;chr7:28725740..28725778,+!p1@CREB5!1.02!86.38!CREB5;;chr14:73360799..73360817,-!p1@DPF3!1.02!33.10!DPF3;;chr1:151032922..151032951,+!p2@MLLT11!1.02!15.90!MLLT11;;chr12:103352277..103352324,+!p2@ASCL1!1.02!9.56!ASCL1;;chr10:48359344..48359376,+!p2@ZNF488!1.02!9.50!ZNF488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A1!0.37!5.40!BRCA1;;chr19:36980429..36980448,-!p1@ZNF566!0.37!5.34!ZNF566;;chr17:46655730..46655791,-!p1@HOXB4!0.37!4.66!HOXB4;;chr10:38146994..38147039,-!p2@ZNF248!0.37!4.41!ZNF248;;chr17:7382911..7382932,-!p4@ZBTB4!0.37!3.91!ZBTB4;;chr20:39946400..39946423,-!p3@ZHX3!0.37!3.17!ZHX3;;chr15:31619535..31619569,+!p5@KLF13!0.37!3.10!KLF13;;chr1:164528588..164528610,+!p8@PBX1!0.37!2.55!PBX1;;chr12:51611660..51611692,-!p5@POU6F1!0.37!1.55!POU6F1;;chr11:113930355..113930366,+!p5@ZBTB16!0.37!1.37!ZBTB16;;chr12:104531768..104531782,-!p7@NFYB!0.37!1.37!NFYB;;chr13:95364761..95364780,-!p2@SOX21!0.37!1.37!SOX21;;chr17:46682321..46682362,-!p1@HOXB6!0.37!1.37!HOXB6;;chr19:38085739..38085762,+!p3@ZNF540!0.37!1.37!ZNF540;;chr2:166430711..166430741,+!p5@CSRNP3!0.37!1.37!CSRNP3;;chr2:180726058..180726098,-!p3@ZNF385B!0.37!1.37!ZNF385B;;chr2:2329984..2329999,-!p10@MYT1L!0.37!1.37!MYT1L;;chr2:242556900..242556916,-!p6@THAP4!0.37!1.37!THAP4;;chr3:147110145..147110180,-!p4@ZIC4!0.37!1.37!ZIC4;;chr7:14029034..14029087,-!p5@ETV1!0.37!1.37!ETV1;;chr1:170632477..170632506,+!p6@PRRX1!0.37!1.37!PRRX1;;chr1:8585919..8585943,-!p18@RERE!0.37!1.37!RERE;;chr22:41697520..41697613,+!p1@ZC3H7B!0.36!117.24!ZC3H7B;;chr18:53255415..53255491,-!p1@TCF4!0.36!17.20!TCF4;;chr2:208030647..208030689,-!p1@KLF7!0.36!17.01!KLF7;;chr3:40566428..40566480,+!p1@ZNF621!0.36!15.90!ZNF621;;chrX:152599604..152599626,+!p1@ZNF275!0.36!15.15!ZNF275;;chr16:1464688..1464728,-!p1@UNKL!0.36!13.91!UNKL;;chr1:14075865..14075896,+!p3@PRDM2!0.36!8.13!PRDM2;;chr12:54019757..54019804,-!p2@ATF7!0.36!7.39!ATF7;;chr1:27022839..27022890,+!p3@ARID1A!0.36!5.34!ARID1A;;chr10:76585205..76585251,+!p3@KAT6B!0.36!3.79!KAT6B;;chr19:36980455..36980469,-!p2@ZNF566!0.36!3.73!ZNF566;;chr10:70320074..70320106,+!p1@TET1!0.36!3.42!TET1;;chr10:43932553..43932571,+!p2@ZNF487P!0.36!2.79!ZNF487P;;chr9:137218262..137218273,+!p5@RXRA!0.36!2.73!RXRA;;chr19:44331461..44331482,+!p3@ZNF283!0.36!2.61!ZNF283;;chr2:85980951..85981004,+!p1@ATOH8!0.36!2.61!ATOH8;;chr12:56583371..56583394,-!p2@SMARCC2!0.36!2.42!SMARCC2;;chr12:125002861..125002894,-!p7@NCOR2!0.36!2.30!NCOR2;;chr8:60031762..60031803,-!p3@TOX!0.36!2.24!TOX;;chr3:40547564..40547616,+!p1@ZNF620!0.36!2.17!ZNF620;;chr19:38183208..38183225,-!p1@ZNF781!0.36!1.92!ZNF781;;chr19:57078830..57078848,+!p4@ZNF470!0.36!1.86!ZNF470;;chr18:53255839..53255854,-!p13@TCF4!0.36!1.68!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!0.36!1.61!PRRX1;;chr1:114301755..114301796,-!p3@PHTF1!0.36!1.55!PHTF1;;chr20:21494577..21494588,-!p4@NKX2-2!0.36!1.30!NKX2-2;;chr20:42544761..42544775,+!p6@TOX2!0.36!1.30!TOX2;;chr15:60296481..60296492,+!p7@FOXB1!0.36!1.30!FOXB1;;chr9:124991204..124991246,-!p1@LHX6!0.36!1.30!LHX6;;chr6:28321909..28321965,-!p3@ZNF323!0.36!1.30!ZNF323;;chr6:41673552..41673571,-!p10@TFEB!0.36!1.30!TFEB;;chr7:27195867..27195893,-!p3@HOXA7!0.36!1.30!HOXA7;;chr7:73038889..73038905,-!p3@MLXIPL!0.36!1.30!MLXIPL;;chr8:28748765..28748785,+!p10@HMBOX1!0.36!1.30!HMBOX1;;chr2:166428839..166428859,+!p2@CSRNP3!0.36!1.30!CSRNP3;;chr2:177001290..177001315,+!p1@HOXD3!0.36!1.30!HOXD3;;chr3:114819073..114819100,-!p10@ZBTB20!0.36!1.30!ZBTB20;;chr13:79177629..79177636,-!p4@POU4F1!0.36!1.30!POU4F1;;chrX:106960285..106960299,-!p1@TSC22D3!0.35!53.90!TSC22D3;;chr12:56583243..56583293,-!p1@SMARCC2!0.35!49.18!SMARCC2;;chr2:48541789..48541874,+!p1@FOXN2!0.35!45.58!FOXN2;;chr1:211432700..211432753,+!p1@RCOR3!0.35!37.07!RCOR3;;chr16:69599861..69599885,+!p1@NFAT5!0.35!32.66!NFAT5;;chr15:42783305..42783348,-!p1@ZFP106!0.35!31.98!ZFP106;;chr9:125667618..125667678,-!p2@RC3H2!0.35!8.38!RC3H2;;chr17:5095126..5095169,-!p1@ZNF594!0.35!7.89!ZNF594;;chr19:56915668..56915732,+!p1@ZNF583!0.35!6.77!ZNF583;;chr8:28748099..28748141,+!p2@HMBOX1!0.35!5.65!HMBOX1;;chr19:54041382..54041437,+!p3@ZNF331!0.35!5.03!ZNF331;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001896;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10038-101F2
 |is_a=EFO:0002091;;FF:0010038
@@ Line 46: / Line 52: @@
 |library_id=CNhs10645
 |library_id_phase_based=2:CNhs10645
-|name="medulla oblongata, adult, pool1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10038
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10038
+|name=medulla oblongata, adult, pool1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs10645,LSID658,release008,COMPLETED"
+|profile_hcage=CNhs10645,LSID658,release008,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10038-101F2;search_select_hide=table117:FF:10038-101F2
 }}

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FF:10038-101F2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0