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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005932
|accession_numbers=CAGE;DRX007937;DRR008809;DRZ000234;DRZ001619
|accession_numbers=CAGE;DRX007937;DRR008809;DRZ000234;DRZ001619;DRZ011584;DRZ012969
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097
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|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg38.nobarcode.bam
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|id=FF:10494-107B8
|id=FF:10494-107B8
|is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424
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|library_id=CNhs11264
|library_id=CNhs11264
|library_id_phase_based=2:CNhs11264
|library_id_phase_based=2:CNhs11264
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10494
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10494
|name=mesothelioma cell line:ACC-MESO-4
|name=mesothelioma cell line:ACC-MESO-4
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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Line 90: Line 100:
|top_motifs=TEF:1.86611113454;TEAD1:1.64317456486;HMGA1,2:1.35322610276;NKX3-1:1.3343588388;HOXA9_MEIS1:1.32916222572;NR6A1:1.31115749297;EVI1:1.16934258039;EN1,2:1.11104125749;PAX8:1.10718624089;IRF7:1.06836625558;RBPJ:1.04024819452;TFDP1:1.03321263023;HSF1,2:0.981698334265;FOX{I1,J2}:0.94981699448;CRX:0.945198989368;STAT1,3:0.940365192995;ADNP_IRX_SIX_ZHX:0.938438575822;FOXP1:0.908740658119;E2F1..5:0.902031498323;SNAI1..3:0.90105142437;CDX1,2,4:0.852918767401;MAZ:0.843231518724;ZNF148:0.793718119266;TP53:0.780271850871;ZEB1:0.776448277913;FOXL1:0.775704288736;CDC5L:0.755435904807;IRF1,2:0.727837937568;STAT2,4,6:0.672994963367;MZF1:0.672474696867;TOPORS:0.670472059189;PAX4:0.664166978771;NFY{A,B,C}:0.63378884632;HOX{A5,B5}:0.613578514324;PITX1..3:0.539889668247;LMO2:0.536914701231;MYOD1:0.523784067891;SOX2:0.52304211296;TBX4,5:0.513611476087;NR3C1:0.483161858333;RXR{A,B,G}:0.477123563624;ZIC1..3:0.47490484978;HOX{A4,D4}:0.469910483231;NFIL3:0.454941159951;XCPE1{core}:0.429967903895;FOXQ1:0.427088256135;GATA6:0.413421312958;TLX2:0.413095173823;TLX1..3_NFIC{dimer}:0.411347653992;POU1F1:0.398340549342;ELK1,4_GABP{A,B1}:0.397298186155;EGR1..3:0.384678698346;T:0.376882286353;EP300:0.375595301838;RREB1:0.365841767768;FOXA2:0.35147200613;PRRX1,2:0.337214312831;bHLH_family:0.322420870638;IKZF2:0.306848078922;HES1:0.30578346972;LHX3,4:0.301492841168;GLI1..3:0.291755398104;FOXO1,3,4:0.279543933281;GTF2I:0.275707015314;ZNF143:0.26852545909;FOXM1:0.26830525482;CEBPA,B_DDIT3:0.247278020078;PDX1:0.221835649492;POU2F1..3:0.205767716064;AIRE:0.188839250141;TFAP2B:0.184226515248;SRF:0.176227594152;SOX17:0.159212927181;FOXP3:0.153107898729;MAFB:0.151574985433;OCT4_SOX2{dimer}:0.143123058171;PAX3,7:0.135679468429;STAT5{A,B}:0.13356900017;TAL1_TCF{3,4,12}:0.110602329686;GFI1:0.0854019662809;CUX2:0.0804004395356;FOX{F1,F2,J1}:0.0750583362831;LEF1_TCF7_TCF7L1,2:0.073878029628;FOXN1:0.0622938380174;ZBTB16:0.0579191197415;PAX5:0.0418345317982;HOX{A6,A7,B6,B7}:0.0387663005374;IKZF1:0.0383819825537;HNF1A:0.0370725942224;YY1:0.02762548512;ATF4:0.0162651569781;FOXD3:0.0155610617946;NKX3-2:0.011351841533;GFI1B:0.00908894621843;NFKB1_REL_RELA:0.000689249306636;ARID5B:-0.00372736296864;SP1:-0.0211524840192;MYBL2:-0.0233859179347;MTE{core}:-0.0261735649032;ZNF384:-0.0412082315621;PATZ1:-0.0468878453329;RORA:-0.0483634214066;SPZ1:-0.0488126444793;ZNF423:-0.0549356920848;POU3F1..4:-0.058842282951;RFX1:-0.061591641221;NKX2-1,4:-0.0684368423179;EBF1:-0.0839867475411;HBP1_HMGB_SSRP1_UBTF:-0.0846390052424;HNF4A_NR2F1,2:-0.0944627424456;NKX6-1,2:-0.0952178361532;NKX2-2,8:-0.114893278958;NRF1:-0.120588350996;TBP:-0.140402789974;FOS_FOS{B,L1}_JUN{B,D}:-0.159244700775;SREBF1,2:-0.160146381157;HIC1:-0.171270335233;PAX6:-0.172791583997;HAND1,2:-0.176595247759;NFATC1..3:-0.183244065355;XBP1:-0.200770026598;PRDM1:-0.201509909649;HLF:-0.206128386629;GZF1:-0.219632760213;ZBTB6:-0.221151059958;ATF5_CREB3:-0.228615695362;BACH2:-0.238113460223;SOX5:-0.241295653421;PAX1,9:-0.247572986279;NR1H4:-0.248204282623;TFCP2:-0.261051550343;ESR1:-0.262173831976;DBP:-0.26280255168;ONECUT1,2:-0.266804552569;NFE2L1:-0.270494446155;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.280710289762;ELF1,2,4:-0.362580879589;NFE2:-0.368435964429;NKX2-3_NKX2-5:-0.377566437087;PBX1:-0.379788881128;GCM1,2:-0.387793731512;FOSL2:-0.394175426508;JUN:-0.402799873795;MYB:-0.406935495657;MED-1{core}:-0.414215402428;SPI1:-0.423777207767;NR5A1,2:-0.424177675108;UFEwm:-0.42466319665;SMAD1..7,9:-0.440817162047;SOX{8,9,10}:-0.441859988811;POU5F1:-0.447313427557;ATF6:-0.45897511743;ESRRA:-0.460919822544;KLF4:-0.463773873755;RUNX1..3:-0.47235592938;ETS1,2:-0.476642737649;DMAP1_NCOR{1,2}_SMARC:-0.506570815245;AR:-0.513747989847;HIF1A:-0.51759384472;RXRA_VDR{dimer}:-0.524153016786;CREB1:-0.532579604949;TFAP2{A,C}:-0.538772700554;FOX{D1,D2}:-0.54016395352;AHR_ARNT_ARNT2:-0.549421496421;ZFP161:-0.559995596999;SPIB:-0.571538427738;RFX2..5_RFXANK_RFXAP:-0.575214606731;NFE2L2:-0.582175093609;NANOG:-0.588061414043;PAX2:-0.607853276029;MEF2{A,B,C,D}:-0.634125128451;ATF2:-0.636774962682;REST:-0.660885993505;BREu{core}:-0.687207624022;TGIF1:-0.689943341044;NFIX:-0.727042674837;POU6F1:-0.748244637364;MYFfamily:-0.756698260778;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.757119410878;BPTF:-0.762222956151;ALX4:-0.792704275421;GATA4:-0.84389378163;ZNF238:-0.857332239264;GTF2A1,2:-0.915329369397;TFAP4:-0.964223158419;PPARG:-1.0979349371;VSX1,2:-1.14421085951;NANOG{mouse}:-1.16269438879;ALX1:-1.19126312455;MTF1:-1.20268545417;NHLH1,2:-1.2484362641;HMX1:-1.45545954043
|top_motifs=TEF:1.86611113454;TEAD1:1.64317456486;HMGA1,2:1.35322610276;NKX3-1:1.3343588388;HOXA9_MEIS1:1.32916222572;NR6A1:1.31115749297;EVI1:1.16934258039;EN1,2:1.11104125749;PAX8:1.10718624089;IRF7:1.06836625558;RBPJ:1.04024819452;TFDP1:1.03321263023;HSF1,2:0.981698334265;FOX{I1,J2}:0.94981699448;CRX:0.945198989368;STAT1,3:0.940365192995;ADNP_IRX_SIX_ZHX:0.938438575822;FOXP1:0.908740658119;E2F1..5:0.902031498323;SNAI1..3:0.90105142437;CDX1,2,4:0.852918767401;MAZ:0.843231518724;ZNF148:0.793718119266;TP53:0.780271850871;ZEB1:0.776448277913;FOXL1:0.775704288736;CDC5L:0.755435904807;IRF1,2:0.727837937568;STAT2,4,6:0.672994963367;MZF1:0.672474696867;TOPORS:0.670472059189;PAX4:0.664166978771;NFY{A,B,C}:0.63378884632;HOX{A5,B5}:0.613578514324;PITX1..3:0.539889668247;LMO2:0.536914701231;MYOD1:0.523784067891;SOX2:0.52304211296;TBX4,5:0.513611476087;NR3C1:0.483161858333;RXR{A,B,G}:0.477123563624;ZIC1..3:0.47490484978;HOX{A4,D4}:0.469910483231;NFIL3:0.454941159951;XCPE1{core}:0.429967903895;FOXQ1:0.427088256135;GATA6:0.413421312958;TLX2:0.413095173823;TLX1..3_NFIC{dimer}:0.411347653992;POU1F1:0.398340549342;ELK1,4_GABP{A,B1}:0.397298186155;EGR1..3:0.384678698346;T:0.376882286353;EP300:0.375595301838;RREB1:0.365841767768;FOXA2:0.35147200613;PRRX1,2:0.337214312831;bHLH_family:0.322420870638;IKZF2:0.306848078922;HES1:0.30578346972;LHX3,4:0.301492841168;GLI1..3:0.291755398104;FOXO1,3,4:0.279543933281;GTF2I:0.275707015314;ZNF143:0.26852545909;FOXM1:0.26830525482;CEBPA,B_DDIT3:0.247278020078;PDX1:0.221835649492;POU2F1..3:0.205767716064;AIRE:0.188839250141;TFAP2B:0.184226515248;SRF:0.176227594152;SOX17:0.159212927181;FOXP3:0.153107898729;MAFB:0.151574985433;OCT4_SOX2{dimer}:0.143123058171;PAX3,7:0.135679468429;STAT5{A,B}:0.13356900017;TAL1_TCF{3,4,12}:0.110602329686;GFI1:0.0854019662809;CUX2:0.0804004395356;FOX{F1,F2,J1}:0.0750583362831;LEF1_TCF7_TCF7L1,2:0.073878029628;FOXN1:0.0622938380174;ZBTB16:0.0579191197415;PAX5:0.0418345317982;HOX{A6,A7,B6,B7}:0.0387663005374;IKZF1:0.0383819825537;HNF1A:0.0370725942224;YY1:0.02762548512;ATF4:0.0162651569781;FOXD3:0.0155610617946;NKX3-2:0.011351841533;GFI1B:0.00908894621843;NFKB1_REL_RELA:0.000689249306636;ARID5B:-0.00372736296864;SP1:-0.0211524840192;MYBL2:-0.0233859179347;MTE{core}:-0.0261735649032;ZNF384:-0.0412082315621;PATZ1:-0.0468878453329;RORA:-0.0483634214066;SPZ1:-0.0488126444793;ZNF423:-0.0549356920848;POU3F1..4:-0.058842282951;RFX1:-0.061591641221;NKX2-1,4:-0.0684368423179;EBF1:-0.0839867475411;HBP1_HMGB_SSRP1_UBTF:-0.0846390052424;HNF4A_NR2F1,2:-0.0944627424456;NKX6-1,2:-0.0952178361532;NKX2-2,8:-0.114893278958;NRF1:-0.120588350996;TBP:-0.140402789974;FOS_FOS{B,L1}_JUN{B,D}:-0.159244700775;SREBF1,2:-0.160146381157;HIC1:-0.171270335233;PAX6:-0.172791583997;HAND1,2:-0.176595247759;NFATC1..3:-0.183244065355;XBP1:-0.200770026598;PRDM1:-0.201509909649;HLF:-0.206128386629;GZF1:-0.219632760213;ZBTB6:-0.221151059958;ATF5_CREB3:-0.228615695362;BACH2:-0.238113460223;SOX5:-0.241295653421;PAX1,9:-0.247572986279;NR1H4:-0.248204282623;TFCP2:-0.261051550343;ESR1:-0.262173831976;DBP:-0.26280255168;ONECUT1,2:-0.266804552569;NFE2L1:-0.270494446155;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.280710289762;ELF1,2,4:-0.362580879589;NFE2:-0.368435964429;NKX2-3_NKX2-5:-0.377566437087;PBX1:-0.379788881128;GCM1,2:-0.387793731512;FOSL2:-0.394175426508;JUN:-0.402799873795;MYB:-0.406935495657;MED-1{core}:-0.414215402428;SPI1:-0.423777207767;NR5A1,2:-0.424177675108;UFEwm:-0.42466319665;SMAD1..7,9:-0.440817162047;SOX{8,9,10}:-0.441859988811;POU5F1:-0.447313427557;ATF6:-0.45897511743;ESRRA:-0.460919822544;KLF4:-0.463773873755;RUNX1..3:-0.47235592938;ETS1,2:-0.476642737649;DMAP1_NCOR{1,2}_SMARC:-0.506570815245;AR:-0.513747989847;HIF1A:-0.51759384472;RXRA_VDR{dimer}:-0.524153016786;CREB1:-0.532579604949;TFAP2{A,C}:-0.538772700554;FOX{D1,D2}:-0.54016395352;AHR_ARNT_ARNT2:-0.549421496421;ZFP161:-0.559995596999;SPIB:-0.571538427738;RFX2..5_RFXANK_RFXAP:-0.575214606731;NFE2L2:-0.582175093609;NANOG:-0.588061414043;PAX2:-0.607853276029;MEF2{A,B,C,D}:-0.634125128451;ATF2:-0.636774962682;REST:-0.660885993505;BREu{core}:-0.687207624022;TGIF1:-0.689943341044;NFIX:-0.727042674837;POU6F1:-0.748244637364;MYFfamily:-0.756698260778;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.757119410878;BPTF:-0.762222956151;ALX4:-0.792704275421;GATA4:-0.84389378163;ZNF238:-0.857332239264;GTF2A1,2:-0.915329369397;TFAP4:-0.964223158419;PPARG:-1.0979349371;VSX1,2:-1.14421085951;NANOG{mouse}:-1.16269438879;ALX1:-1.19126312455;MTF1:-1.20268545417;NHLH1,2:-1.2484362641;HMX1:-1.45545954043
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10494-107B8;search_select_hide=table117:FF:10494-107B8
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:mesothelioma cell line:ACC-MESO-4
Species:Human (Homo sapiens)
Library ID:CNhs11264
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age59
cell typemesothelial cell
cell lineACC-MESO-4
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005932
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11264 CAGE DRX007937 DRR008809
Accession ID Hg19

Library idBAMCTSS
CNhs11264 DRZ000234 DRZ001619
Accession ID Hg38

Library idBAMCTSS
CNhs11264 DRZ011584 DRZ012969
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.387
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta1.053
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0213
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0611
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0844
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.201
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0844
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.00825
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0844
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.278
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0844
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0844
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0844
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11264

Jaspar motifP-value
MA0002.20.00834
MA0003.10.545
MA0004.10.771
MA0006.10.104
MA0007.10.113
MA0009.10.975
MA0014.10.472
MA0017.10.581
MA0018.20.625
MA0019.10.583
MA0024.15.00264e-4
MA0025.10.29
MA0027.10.536
MA0028.10.0844
MA0029.10.435
MA0030.10.32
MA0031.10.195
MA0035.27.76258e-4
MA0038.10.144
MA0039.20.957
MA0040.10.455
MA0041.10.336
MA0042.10.634
MA0043.10.674
MA0046.10.243
MA0047.20.0634
MA0048.10.0651
MA0050.13.34703e-7
MA0051.14.00778e-8
MA0052.10.0114
MA0055.10.0015
MA0057.10.614
MA0058.10.884
MA0059.10.661
MA0060.13.62764e-4
MA0061.10.926
MA0062.20.435
MA0065.20.729
MA0066.10.427
MA0067.10.556
MA0068.10.765
MA0069.10.62
MA0070.10.201
MA0071.10.589
MA0072.10.757
MA0073.10.827
MA0074.10.181
MA0076.10.18
MA0077.10.937
MA0078.10.419
MA0079.20.659
MA0080.22.59905e-8
MA0081.10.0197
MA0083.10.681
MA0084.10.552
MA0087.10.725
MA0088.10.217
MA0090.13.98869e-14
MA0091.10.102
MA0092.10.298
MA0093.10.92
MA0099.20.0316
MA0100.10.473
MA0101.10.177
MA0102.20.94
MA0103.10.00392
MA0104.20.202
MA0105.10.422
MA0106.10.0376
MA0107.10.159
MA0108.20.638
MA0111.10.814
MA0112.20.278
MA0113.10.94
MA0114.10.498
MA0115.10.896
MA0116.10.368
MA0117.10.804
MA0119.10.366
MA0122.10.636
MA0124.10.111
MA0125.10.557
MA0131.10.816
MA0135.10.00785
MA0136.18.76318e-6
MA0137.22.29314e-4
MA0138.20.0014
MA0139.10.738
MA0140.10.114
MA0141.10.0268
MA0142.10.0528
MA0143.10.012
MA0144.10.119
MA0145.10.397
MA0146.10.849
MA0147.10.269
MA0148.10.536
MA0149.10.994
MA0150.10.00851
MA0152.10.828
MA0153.10.44
MA0154.10.256
MA0155.10.435
MA0156.10.153
MA0157.10.155
MA0159.10.974
MA0160.10.301
MA0162.10.414
MA0163.10.0677
MA0164.10.36
MA0258.10.355
MA0259.10.0449



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11264

Novel motifP-value
10.985
100.289
1000.364
1010.818
1020.498
1030.179
1040.878
1050.769
1060.73
1070.211
1080.864
1090.924
110.531
1100.18
1110.107
1120.263
1130.0809
1140.215
1150.741
1160.79
1170.991
1180.57
1190.761
120.583
1200.593
1210.566
1220.874
1230.139
1240.765
1250.154
1260.482
1270.404
1280.995
1290.543
130.0939
1300.368
1310.893
1320.544
1330.0107
1340.777
1350.00541
1360.112
1370.0249
1380.568
1390.00826
140.486
1400.0967
1410.504
1420.876
1430.0256
1440.714
1450.885
1460.746
1470.618
1480.964
1490.311
150.323
1500.0277
1510.594
1520.00732
1530.126
1540.762
1550.56
1560.521
1570.156
1580.251
1590.902
160.548
1600.806
1610.534
1620.773
1630.353
1640.47
1650.052
1660.454
1670.134
1680.0435
1690.257
170.956
180.268
190.0977
20.974
200.129
210.38
220.597
230.326
240.737
250.269
260.837
270.192
280.106
290.923
30.734
300.626
310.159
320.173
330.4
340.756
350.184
360.246
370.659
380.817
390.261
40.612
400.811
411.94563e-4
420.608
430.217
440.0258
450.459
460.266
470.973
480.928
490.25
50.153
500.792
510.722
520.419
530.579
540.934
550.5
560.605
570.25
580.0413
590.617
60.849
600.302
610.451
620.0455
630.941
640.928
650.211
660.021
670.727
680.433
690.792
70.495
700.9
710.484
720.896
730.19
740.592
750.522
760.882
770.0981
780.302
790.375
80.169
800.176
810.484
820.176
830.0585
840.355
850.282
860.643
870.0287
880.622
890.92
90.336
900.516
910.109
920.111
930.578
940.503
950.661
960.37
970.2
980.0705
990.497



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11264


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000215 (barrier cell)
0000174 (steroid hormone secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0002097 (cortical cell of adrenal gland)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102219 (adrenocortical carcinoma cell)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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