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{{f5samples
{{f5samples
|id=FF:10173-103C2
|DRA_sample_Accession=CAGE@SAMD00005550
|name=cerebellum - adult, donor10196
|accession_numbers=CAGE;DRX008631;DRR009503;DRZ000928;DRZ002313;DRZ012278;DRZ013663
|sample_id=10173
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028
|rna_tube_id=103C2
|rna_box=103
|rna_position=C2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=cerebellum
|sample_donor(cell lot)=donor: 10196
|sample_sex=female
|sample_age=60
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.3
|rna_od260/280=2.05
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=42.66825
|rna_concentration=0.56891
|sample_note=
|profile_hcage=CNhs13799,LSID1086,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.65!448.59!ZIC1;;chr2:182545234..182545252,-!p1@NEUROD1!2.52!328.05!NEUROD1;;chr1:244214577..244214593,+!p1@ZNF238!2.50!314.32!ZNF238;;chr3:147127177..147127194,+!p2@ZIC1!2.36!225.82!ZIC1;;chr11:31832658..31832681,-!p1@PAX6!2.33!212.09!PAX6;;chr9:114287433..114287513,+!p1@ZNF483!2.22!411.97!ZNF483;;chr13:100634031..100634045,+!p1@ZIC2!2.21!160.21!ZIC2;;chr17:37764128..37764258,-!p1@NEUROD2!2.19!152.58!NEUROD2;;chr19:13135582..13135600,+!p3@NFIX!2.14!135.80!NFIX;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!2.01!102.23!EN2;;chr3:22414241..22414278,-!p5@ZNF385D!2.00!99.18!ZNF385D;;chr7:100065686..100065701,-!p2@TSC22D4!1.95!88.50!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.97!PEG3;;chr11:31832610..31832639,-!p5@PAX6!1.92!82.39!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.91!202.93!ZFPM2;;chr13:100634004..100634025,+!p2@ZIC2!1.88!74.77!ZIC2;;chr8:106330696..106330719,+!p2@ZFPM2!1.86!90.02!ZFPM2;;chr21:34442439..34442455,+!p1@OLIG1!1.86!71.71!OLIG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.86!71.71!SMARCE1;;chr15:31658288..31658338,+!p4@KLF13!1.84!68.66!KLF13;;chr11:31832862..31832884,-!p2@PAX6!1.84!68.66!PAX6;;chrX:136648279..136648295,+!p1@ZIC3!1.79!61.03!ZIC3;;chr7:63505799..63505904,+!p1@ZNF727!1.78!59.51!ZNF727;;chr3:22414187..22414230,-!p6@ZNF385D!1.78!59.51!ZNF385D;;chr1:214161272..214161322,+!p1@PROX1!1.77!79.34!PROX1;;chr19:57352109..57352153,-!p2@ZIM2!1.72!51.88!ZIM2;;chr19:38085768..38085821,+!p1@ZNF540!1.71!73.24!ZNF540;;chr7:14028488..14028516,-!p2@ETV1!1.71!54.93!ETV1;;chr7:14025855..14025890,-!p6@ETV1!1.67!45.77!ETV1;;chr12:26277817..26277863,-!p2@BHLHE41!1.66!59.51!BHLHE41;;chr3:181429704..181429722,+!p1@SOX2!1.66!44.25!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.64!48.83!HLF;;chr13:100634130..100634143,+!p3@ZIC2!1.63!41.20!ZIC2;;chr8:53166899..53166914,-!p3@ST18!1.63!41.20!ST18;;chr18:22932080..22932170,-!p1@ZNF521!1.61!163.26!ZNF521;;chr17:35294075..35294102,+!p1@ENST00000559335!1.61!39.67!LHX1;;chr11:31832807..31832823,-!p4@PAX6!1.61!39.67!PAX6;;chr2:182545282..182545294,-!p2@NEUROD1!1.61!39.67!NEUROD1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!47.30!ZBTB38;;chr14:73360799..73360817,-!p1@DPF3!1.59!128.17!DPF3;;chr7:73038839..73038862,-!p1@MLXIPL!1.59!38.15!MLXIPL;;chr12:26277956..26277980,-!p1@BHLHE41!1.58!128.17!BHLHE41;;chr15:61521417..61521460,-!p2@RORA!1.57!79.34!RORA;;chr3:114819124..114819200,-!p3@ZBTB20!1.56!80.87!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!1.56!56.46!ZBTB16;;chr1:244219775..244219893,+!p2@ZNF238!1.56!47.30!ZNF238;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.09!NFIX;;chr19:13135566..13135577,+!p9@NFIX!1.54!33.57!NFIX;;chr12:106976678..106976708,+!p2@RFX4!1.54!33.57!RFX4;;chr7:64342913..64342935,+!p2@ZNF273!1.54!33.57!ZNF273;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.04!MYT1L;;chr2:66662281..66662308,+!p1@MEIS1!1.51!103.76!MEIS1;;chr3:147111231..147111281,+!p3@ZIC1!1.50!30.52!ZIC1;;chr11:31832581..31832601,-!p7@PAX6!1.50!30.52!PAX6;;chrX:136648297..136648319,+!p3@ZIC3!1.50!30.52!ZIC3;;chr7:14025816..14025842,-!p9@ETV1!1.50!30.52!ETV1;;chr1:61548069..61548102,+!p3@NFIA!1.49!70.19!NFIA;;chr4:81118647..81118666,+!p1@PRDM8!1.49!39.67!PRDM8;;chr3:147114260..147114290,-!p3@ZIC4!1.48!28.99!ZIC4;;chr21:34442540..34442560,+!p2@OLIG1!1.48!28.99!OLIG1;;chr7:14026063..14026091,-!p10@ETV1!1.48!28.99!ETV1;;chr8:106330823..106330836,+!p3@ZFPM2!1.48!28.99!ZFPM2;;chr11:113930425..113930471,+!p1@ZBTB16!1.46!39.67!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.45!27.46!RFX4;;chr5:170736243..170736279,+!p1@TLX3!1.45!27.46!TLX3;;chr6:15401104..15401166,+!p5@JARID2!1.45!27.46!JARID2;;chr7:1272500..1272513,+!p1@UNCX!1.45!27.46!UNCX;;chr3:147124307..147124336,-!p2@ZIC4!1.45!27.46!ZIC4;;chr1:244214611..244214624,+!p4@ZNF238!1.45!27.46!ZNF238;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.93!SOX15;;chr15:57511609..57511651,+!p2@TCF12!1.44!44.25!TCF12;;chr7:14028743..14028799,-!p3@ETV1!1.44!33.57!ETV1;;chr1:151032142..151032195,+!p5@MLLT11!1.43!48.83!MLLT11;;chr20:62795799..62795819,+!p1@MYT1!1.43!25.94!MYT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.94!PKNOX2;;chr14:21994449..21994524,-!p2@SALL2!1.42!73.24!SALL2;;chr2:166326200..166326216,+!p1@CSRNP3!1.42!36.62!CSRNP3;;chr2:182545296..182545307,-!p3@NEUROD1!1.41!24.41!NEUROD1;;chr2:2328725..2328739,-!p5@MYT1L!1.41!24.41!MYT1L;;chr19:46801639..46801699,+!p1@HIF3A!1.41!24.41!HIF3A;;chr16:67197654..67197716,+!p3@HSF4!1.41!24.41!HSF4;;chr14:58798013..58798071,+!p2@ARID4A!1.41!24.41!ARID4A;;chr7:14029283..14029311,-!p1@ETV1!1.39!120.54!ETV1;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.94!IRF6;;chr19:46800289..46800327,+!p2@HIF3A!1.38!22.89!HIF3A;;chr8:93107451..93107468,-!p2@RUNX1T1!1.38!22.89!RUNX1T1;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!22.89!ZBTB20;;chr3:147111505..147111529,+!p6@ZIC1!1.38!22.89!ZIC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.35!21.36!TFAP2B;;chr5:170736216..170736238,+!p2@TLX3!1.32!19.84!TLX3;;chr8:93115274..93115323,-!p4@RUNX1T1!1.32!19.84!RUNX1T1;;chr3:147139053..147139112,+!p5@ZIC1!1.32!19.84!ZIC1;;chr11:31832687..31832704,-!p6@PAX6!1.32!19.84!PAX6;;chr13:100634088..100634099,+!p5@ZIC2!1.32!19.84!ZIC2;;chr14:57277178..57277203,-!p1@OTX2!1.32!19.84!OTX2;;chr14:58797974..58798011,+!p3@ARID4A!1.32!19.84!ARID4A;;chr5:178368186..178368238,+!p1@ZNF454!1.30!33.57!ZNF454;;chr10:64134120..64134183,+!p1@ZNF365!1.30!22.89!ZNF365;;chr17:38256822..38256851,-!p1@NR1D1!1.29!140.38!NR1D1;;chr15:60884706..60884743,-!p1@RORA!1.29!94.60!RORA;;chr7:14029312..14029325,-!p4@ETV1!1.29!22.89!ETV1;;chr7:14026022..14026044,-!p7@ETV1!1.29!18.31!ETV1;;chr7:14028693..14028704,-!p12@ETV1!1.29!18.31!ETV1;;chr2:180726331..180726344,-!p5@ZNF385B!1.29!18.31!ZNF385B;;chr3:141105235..141105307,+!p7@ZBTB38!1.29!18.31!ZBTB38;;chr11:31839488..31839515,-!p3@PAX6!1.29!18.31!PAX6;;chr1:61548374..61548415,+!p4@NFIA!1.28!33.57!NFIA;;chr21:47063625..47063658,+!p1@PCBP3!1.27!74.77!PCBP3;;chr19:38183208..38183225,-!p1@ZNF781!1.25!21.36!ZNF781;;chr14:33403881..33403924,+!p1@NPAS3!1.25!16.78!NPAS3;;chr7:64342863..64342905,+!p3@ZNF273!1.25!16.78!ZNF273;;chr8:93107696..93107716,-!p8@RUNX1T1!1.25!16.78!RUNX1T1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.25!16.78!POU3F3;;chr2:180726040..180726052,-!p2@ZNF385B!1.25!16.78!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.25!16.78!SOX2;;chr4:57547454..57547469,-!p1@HOPX!1.25!16.78!HOPX;;chrX:136648643..136648711,+!p2@ZIC3!1.25!16.78!ZIC3;;chr1:61547894..61547968,+!p2@NFIA!1.24!47.30!NFIA;;chr5:92918894..92918912,+!p2@NR2F1!1.22!50.35!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!1.22!42.72!SALL2;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.46!ZNF804A;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.84!ZNF488;;chr11:125034586..125034604,+!p3@PKNOX2!1.21!15.26!PKNOX2;;chr13:100633726..100633749,+!p6@ZIC2!1.21!15.26!ZIC2;;chr8:106330972..106330979,+!p7@ZFPM2!1.21!15.26!ZFPM2;;chr15:61521462..61521482,-!p4@RORA!1.21!15.26!RORA;;chr2:180726058..180726098,-!p3@ZNF385B!1.21!15.26!ZNF385B;;chr3:141103634..141103665,+!p18@ZBTB38!1.21!15.26!ZBTB38;;chr1:2235077..2235103,+!p9@SKI!1.21!15.26!SKI;;chr20:20348740..20348757,+!p1@INSM1!1.21!15.26!INSM1;;chr7:28448965..28448994,+!p2@CREB5!1.20!51.88!CREB5;;chr9:3525910..3525955,-!p4@RFX3!1.20!44.25!RFX3;;chr1:61548118..61548129,+!p9@NFIA!1.20!16.78!NFIA;;chr20:3388541..3388575,-!p2@C20orf194!1.19!56.46!C20orf194;;chr2:157198916..157198978,-!p2@NR4A2!1.19!50.35!NR4A2;;chr11:61520075..61520136,+!p1@C11orf9!1.19!30.52!C11orf9;;chr3:42947600..42947680,+!p1@ZNF662!1.17!19.84!ZNF662;;chr22:38380543..38380569,-!p1@SOX10!1.17!13.73!SOX10;;chr3:147110055..147110129,-!p1@ZIC4!1.17!13.73!ZIC4;;chr3:27763807..27763822,-!p1@EOMES!1.17!13.73!EOMES;;chr9:135457981..135458003,+!p1@BARHL1!1.17!13.73!BARHL1;;chr7:14025135..14025147,-!p42@ETV1!1.17!13.73!ETV1;;chr8:106330543..106330554,+!p4@ZFPM2!1.17!13.73!ZFPM2;;chr8:106330848..106330859,+!p5@ZFPM2!1.17!13.73!ZFPM2;;chr8:53322304..53322340,-!p1@ST18!1.17!13.73!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.17!13.73!OLIG2;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.73!HSF4;;chr18:56532079..56532095,+!p8@ZNF532!1.17!13.73!ZNF532;;chr17:70117153..70117174,+!p1@SOX9!1.15!132.75!SOX9;;chr1:61548225..61548299,+!p1@NFIA!1.14!166.31!NFIA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.14!27.46!ZNF395;;chr19:53496768..53496799,-!p1@ZNF702P!1.14!19.84!ZNF702P;;chr19:37096139..37096170,-!p2@ZNF529!1.13!35.09!ZNF529;;chr18:47814186..47814232,-!p2@CXXC1!1.13!25.94!CXXC1;;chr17:38465413..38465438,+!p5@RARA!1.13!19.84!RARA;;chr5:178322893..178322931,+!p1@ZFP2!1.13!18.31!ZFP2;;chr5:158526459..158526481,-!p2@EBF1!1.13!16.78!EBF1;;chr18:14132422..14132440,-!p1@ZNF519!1.13!16.78!ZNF519;;chr19:21512202..21512225,-!p1@ZNF708!1.12!62.56!ZNF708;;chr19:57183114..57183145,-!p1@ZNF835!1.12!13.73!ZNF835;;chr19:58545369..58545404,+!p2@ZSCAN1!1.12!12.21!ZSCAN1;;chr1:42384532..42384603,-!p2@HIVEP3!1.12!12.21!HIVEP3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.21!ZBED1;;chr11:125034605..125034636,+!p2@PKNOX2!1.12!12.21!PKNOX2;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.21!NPAS3;;chr22:21771656..21771662,+!p1@HIC2!1.12!12.21!HIC2;;chr22:41763452..41763466,+!p2@TEF!1.12!12.21!TEF;;chr2:180726254..180726275,-!p4@ZNF385B!1.12!12.21!ZNF385B;;chr3:147121835..147121852,-!p9@ZIC4!1.12!12.21!ZIC4;;chr3:21792682..21792720,-!p1@ZNF385D!1.12!12.21!ZNF385D;;chr7:14026123..14026135,-!p30@ETV1!1.12!12.21!ETV1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.12!12.21!RUNX1T1;;chr17:40897043..40897087,-!p1@EZH1!1.11!106.81!EZH1;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.61!NFIB;;chr19:37096194..37096235,+!p1@ZNF382!1.11!38.15!ZNF382;;chr19:13136130..13136165,+!p6@NFIX!1.10!15.26!NFIX;;chr2:113057415..113057477,+!p3@ZC3H6!1.10!15.26!ZC3H6;;chr15:41913690..41913753,+!p2@MGA!1.09!27.46!MGA;;chr7:86781858..86781879,+!p3@DMTF1!1.09!18.31!DMTF1;;chr7:64254793..64254813,+!p1@ZNF138!1.08!126.64!ZNF138;;chr2:113033164..113033219,+!p1@ZC3H6!1.08!93.07!ZC3H6;;chr6:10412600..10412637,-!p1@TFAP2A!1.08!18.31!TFAP2A;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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006215,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg38.nobarcode.ctss.bed.gz
|id=FF:10173-103C2
|is_a=FF:0010083
|is_obsolete=
|library_id=CNhs13799
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|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10173
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10173
|name=cerebellum - adult, donor10196
|namespace=
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|profile_hcage=CNhs13799,LSID1086,release014,COMPLETED
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.56891
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.3
|rna_od260/280=2.05
|rna_position=C2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103C2
|rna_weight_ug=42.66825
|sample_age=60
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10196
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.26401371014867e-229!GO:0043226;organelle;3.8681586375138e-142!GO:0043229;intracellular organelle;2.028201406704e-141!GO:0043227;membrane-bound organelle;2.96417552698594e-136!GO:0043231;intracellular membrane-bound organelle;5.70533913480171e-136!GO:0005737;cytoplasm;3.07668301812797e-128!GO:0044444;cytoplasmic part;5.7907640985542e-85!GO:0044422;organelle part;4.97865244629208e-73!GO:0044446;intracellular organelle part;5.56765034965326e-72!GO:0032991;macromolecular complex;7.45600728825179e-67!GO:0005634;nucleus;1.32332253717434e-55!GO:0005515;protein binding;3.00748758237653e-52!GO:0003723;RNA binding;1.75516700851666e-47!GO:0043170;macromolecule metabolic process;4.19889902202628e-47!GO:0044238;primary metabolic process;3.85624237055974e-46!GO:0044237;cellular metabolic process;4.28585489865847e-46!GO:0030529;ribonucleoprotein complex;4.73334464421435e-44!GO:0016043;cellular component organization and biogenesis;5.38269022589557e-44!GO:0044428;nuclear part;2.32808186136284e-43!GO:0033036;macromolecule localization;2.32353575521728e-42!GO:0015031;protein transport;6.21991056264651e-41!GO:0043233;organelle lumen;1.34139224009086e-38!GO:0031974;membrane-enclosed lumen;1.34139224009086e-38!GO:0005739;mitochondrion;1.9356116085337e-38!GO:0008104;protein localization;7.12771531102775e-38!GO:0045184;establishment of protein localization;3.18187330528781e-37!GO:0043234;protein complex;3.58183523327129e-37!GO:0016071;mRNA metabolic process;7.65553289650795e-34!GO:0043283;biopolymer metabolic process;1.00603025403279e-33!GO:0006396;RNA processing;2.05608894277465e-33!GO:0031090;organelle membrane;7.3435129070695e-33!GO:0010467;gene expression;8.96254786324012e-32!GO:0046907;intracellular transport;3.42043360424662e-31!GO:0008380;RNA splicing;9.20422942795074e-29!GO:0006397;mRNA processing;1.92814035217288e-28!GO:0051649;establishment of cellular localization;6.16091471354276e-27!GO:0044429;mitochondrial part;9.09393667552274e-27!GO:0051641;cellular localization;1.09430552380763e-26!GO:0031967;organelle envelope;1.09430552380763e-26!GO:0031975;envelope;1.36025204511604e-26!GO:0031981;nuclear lumen;1.0766109027308e-25!GO:0006886;intracellular protein transport;1.91977411566621e-25!GO:0019538;protein metabolic process;4.59952898958493e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.95237921514485e-24!GO:0005840;ribosome;3.71350820814728e-22!GO:0016192;vesicle-mediated transport;4.00353810329493e-22!GO:0044260;cellular macromolecule metabolic process;8.07152207031621e-22!GO:0044267;cellular protein metabolic process;1.0403883975195e-21!GO:0006996;organelle organization and biogenesis;1.4595506875239e-21!GO:0005829;cytosol;2.35460032408731e-20!GO:0006412;translation;3.52553538701465e-20!GO:0006119;oxidative phosphorylation;5.3554200647914e-20!GO:0065003;macromolecular complex assembly;2.00850225103975e-19!GO:0003676;nucleic acid binding;3.44835321814523e-19!GO:0016070;RNA metabolic process;4.3023665465419e-19!GO:0005654;nucleoplasm;6.01125847442073e-19!GO:0005681;spliceosome;1.69386690503329e-18!GO:0003735;structural constituent of ribosome;1.7804506458801e-18!GO:0006512;ubiquitin cycle;2.98079966692168e-18!GO:0022607;cellular component assembly;1.01542328342965e-17!GO:0005740;mitochondrial envelope;1.26246563625223e-17!GO:0019866;organelle inner membrane;1.26780572766382e-17!GO:0031966;mitochondrial membrane;1.64959487375361e-17!GO:0044451;nucleoplasm part;3.24068621884204e-17!GO:0000166;nucleotide binding;5.76564833533075e-17!GO:0005743;mitochondrial inner membrane;3.322353893274e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.56476921910696e-16!GO:0017111;nucleoside-triphosphatase activity;5.17226054849636e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;5.44439102715022e-16!GO:0005794;Golgi apparatus;5.44439102715022e-16!GO:0016462;pyrophosphatase activity;5.44439102715022e-16!GO:0033279;ribosomal subunit;6.46466546246379e-16!GO:0044455;mitochondrial membrane part;2.98080326774014e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.25275043623634e-15!GO:0016874;ligase activity;1.54240695832163e-14!GO:0009059;macromolecule biosynthetic process;3.67820681178022e-14!GO:0031982;vesicle;8.74257180866159e-14!GO:0005746;mitochondrial respiratory chain;2.5368042771436e-13!GO:0012505;endomembrane system;3.20304912793895e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.04712030756733e-13!GO:0003954;NADH dehydrogenase activity;4.04712030756733e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.04712030756733e-13!GO:0031410;cytoplasmic vesicle;4.69032896708609e-13!GO:0006457;protein folding;5.31770912650533e-13!GO:0009058;biosynthetic process;6.36077446408836e-13!GO:0016604;nuclear body;8.33227085461445e-13!GO:0048193;Golgi vesicle transport;8.38958286256247e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.36714339967715e-12!GO:0031988;membrane-bound vesicle;1.42664275926476e-12!GO:0045045;secretory pathway;1.77396291007917e-12!GO:0016607;nuclear speck;2.41823213414194e-12!GO:0043412;biopolymer modification;2.64626040600714e-12!GO:0044265;cellular macromolecule catabolic process;2.97825668709507e-12!GO:0043228;non-membrane-bound organelle;3.51707379465724e-12!GO:0043232;intracellular non-membrane-bound organelle;3.51707379465724e-12!GO:0022618;protein-RNA complex assembly;4.80053914279989e-12!GO:0008135;translation factor activity, nucleic acid binding;4.84742044373596e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.85182647031038e-12!GO:0043687;post-translational protein modification;5.73138473596194e-12!GO:0006511;ubiquitin-dependent protein catabolic process;6.00546576069802e-12!GO:0044445;cytosolic part;6.47059207665234e-12!GO:0016023;cytoplasmic membrane-bound vesicle;7.82961351934736e-12!GO:0044249;cellular biosynthetic process;8.6966528644491e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;8.76083188992067e-12!GO:0031980;mitochondrial lumen;9.74697403836338e-12!GO:0005759;mitochondrial matrix;9.74697403836338e-12!GO:0019941;modification-dependent protein catabolic process;1.42138891738572e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.42138891738572e-11!GO:0044257;cellular protein catabolic process;2.12564857205949e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.30043839528782e-11!GO:0045271;respiratory chain complex I;2.30043839528782e-11!GO:0005747;mitochondrial respiratory chain complex I;2.30043839528782e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.99130771305999e-11!GO:0042773;ATP synthesis coupled electron transport;2.99130771305999e-11!GO:0006605;protein targeting;3.15481589850199e-11!GO:0032553;ribonucleotide binding;3.60623432232446e-11!GO:0032555;purine ribonucleotide binding;3.60623432232446e-11!GO:0006259;DNA metabolic process;5.18149328855513e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.02624557070363e-11!GO:0006464;protein modification process;6.06483783576451e-11!GO:0017076;purine nucleotide binding;2.44874886766845e-10!GO:0031965;nuclear membrane;2.5873778213216e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;4.60484779850962e-10!GO:0008134;transcription factor binding;6.19461806850667e-10!GO:0019829;cation-transporting ATPase activity;7.7649178041477e-10!GO:0008565;protein transporter activity;9.23896917249786e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.19638262041629e-09!GO:0048770;pigment granule;2.67821157423374e-09!GO:0042470;melanosome;2.67821157423374e-09!GO:0051082;unfolded protein binding;3.13021916246634e-09!GO:0006323;DNA packaging;3.18569445376307e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.27999058533586e-09!GO:0000375;RNA splicing, via transesterification reactions;3.27999058533586e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.27999058533586e-09!GO:0005635;nuclear envelope;3.4008807285135e-09!GO:0043285;biopolymer catabolic process;3.69215957631372e-09!GO:0006913;nucleocytoplasmic transport;4.59564352880524e-09!GO:0006403;RNA localization;5.98209758066994e-09!GO:0009057;macromolecule catabolic process;7.2278569162224e-09!GO:0051169;nuclear transport;8.29105608259705e-09!GO:0030163;protein catabolic process;1.14251323394311e-08!GO:0050657;nucleic acid transport;1.21670429405428e-08!GO:0051236;establishment of RNA localization;1.21670429405428e-08!GO:0050658;RNA transport;1.21670429405428e-08!GO:0016568;chromatin modification;1.75794946726308e-08!GO:0016887;ATPase activity;1.90622052511956e-08!GO:0015934;large ribosomal subunit;2.12854278883629e-08!GO:0030135;coated vesicle;2.18550025905998e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.18886151356361e-08!GO:0015935;small ribosomal subunit;2.49011041686553e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.58379074659636e-08!GO:0003743;translation initiation factor activity;2.89179078935554e-08!GO:0044248;cellular catabolic process;3.03386391623304e-08!GO:0032940;secretion by cell;3.20836621531099e-08!GO:0004842;ubiquitin-protein ligase activity;3.20836621531099e-08!GO:0008639;small protein conjugating enzyme activity;3.25721949766292e-08!GO:0032559;adenyl ribonucleotide binding;3.93247813455702e-08!GO:0006413;translational initiation;4.16500698481228e-08!GO:0015986;ATP synthesis coupled proton transport;5.52295759279336e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.52295759279336e-08!GO:0005524;ATP binding;5.52586212747581e-08!GO:0019787;small conjugating protein ligase activity;5.53138152642425e-08!GO:0006446;regulation of translational initiation;7.55435062804387e-08!GO:0000502;proteasome complex (sensu Eukaryota);8.65175933736708e-08!GO:0044431;Golgi apparatus part;1.33848215200329e-07!GO:0051186;cofactor metabolic process;1.49075873042447e-07!GO:0042623;ATPase activity, coupled;1.52926577523094e-07!GO:0015630;microtubule cytoskeleton;1.58137217698347e-07!GO:0050794;regulation of cellular process;1.59093354478241e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.76725047352938e-07!GO:0008270;zinc ion binding;1.95333654420893e-07!GO:0044453;nuclear membrane part;1.97453863505536e-07!GO:0030554;adenyl nucleotide binding;2.36883347433977e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.07972641566754e-07!GO:0005643;nuclear pore;3.18369541362618e-07!GO:0003924;GTPase activity;3.75135981280822e-07!GO:0006793;phosphorus metabolic process;5.10926795476075e-07!GO:0006796;phosphate metabolic process;5.10926795476075e-07!GO:0006810;transport;5.18510732972776e-07!GO:0051276;chromosome organization and biogenesis;5.21378606313043e-07!GO:0051028;mRNA transport;5.28717208335402e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.81574299364672e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.16084912702747e-07!GO:0008287;protein serine/threonine phosphatase complex;6.6523166792525e-07!GO:0006461;protein complex assembly;7.18622043174933e-07!GO:0003712;transcription cofactor activity;7.47358259730417e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.71384613574502e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.93477565037804e-07!GO:0015631;tubulin binding;1.06988657021316e-06!GO:0005768;endosome;1.18379952979132e-06!GO:0005730;nucleolus;1.21268683425421e-06!GO:0019717;synaptosome;1.23551528868256e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.24401812220989e-06!GO:0006754;ATP biosynthetic process;1.24828101006777e-06!GO:0006753;nucleoside phosphate metabolic process;1.24828101006777e-06!GO:0048475;coated membrane;1.6416955954715e-06!GO:0030117;membrane coat;1.6416955954715e-06!GO:0050789;regulation of biological process;1.94921739057063e-06!GO:0016881;acid-amino acid ligase activity;2.29851147437497e-06!GO:0006732;coenzyme metabolic process;4.10514120610017e-06!GO:0019222;regulation of metabolic process;5.50455946678105e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.50455946678105e-06!GO:0015399;primary active transmembrane transporter activity;5.50455946678105e-06!GO:0008017;microtubule binding;5.59934935385552e-06!GO:0046034;ATP metabolic process;6.31983721997426e-06!GO:0005083;small GTPase regulator activity;7.83591147413603e-06!GO:0009060;aerobic respiration;7.94610695657459e-06!GO:0016310;phosphorylation;8.47314257473432e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.90368323711348e-06!GO:0004386;helicase activity;9.41066103048394e-06!GO:0005761;mitochondrial ribosome;1.02015272778458e-05!GO:0000313;organellar ribosome;1.02015272778458e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.02505250544711e-05!GO:0008092;cytoskeletal protein binding;1.02505250544711e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.40043767881723e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.40043767881723e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.68493381085527e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.68493381085527e-05!GO:0017038;protein import;1.74170091854284e-05!GO:0000139;Golgi membrane;1.80654705152775e-05!GO:0032446;protein modification by small protein conjugation;1.8771204798784e-05!GO:0007264;small GTPase mediated signal transduction;2.06671865001159e-05!GO:0045259;proton-transporting ATP synthase complex;2.26936896176821e-05!GO:0019899;enzyme binding;2.27971409664282e-05!GO:0045333;cellular respiration;2.42048729942523e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.6212152354999e-05!GO:0048471;perinuclear region of cytoplasm;2.65909539143045e-05!GO:0006752;group transfer coenzyme metabolic process;3.04287608164465e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.04957482644959e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.09642815259094e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.09642815259094e-05!GO:0051234;establishment of localization;3.27264114117154e-05!GO:0005769;early endosome;3.34906143817813e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.511376268108e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.03733857432186e-05!GO:0046914;transition metal ion binding;4.13723088800348e-05!GO:0006974;response to DNA damage stimulus;4.18212644069865e-05!GO:0009150;purine ribonucleotide metabolic process;4.27783153309876e-05!GO:0046930;pore complex;4.29869068068713e-05!GO:0009141;nucleoside triphosphate metabolic process;4.40794577827008e-05!GO:0009152;purine ribonucleotide biosynthetic process;4.40794577827008e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;4.4276485491294e-05!GO:0000245;spliceosome assembly;4.66298685014265e-05!GO:0005525;GTP binding;4.9405233338715e-05!GO:0006163;purine nucleotide metabolic process;4.9405233338715e-05!GO:0045786;negative regulation of progression through cell cycle;4.9405233338715e-05!GO:0006333;chromatin assembly or disassembly;5.04019535819661e-05!GO:0009055;electron carrier activity;5.0843628326828e-05!GO:0065002;intracellular protein transport across a membrane;5.09421283027703e-05!GO:0006366;transcription from RNA polymerase II promoter;5.12779343273436e-05!GO:0016567;protein ubiquitination;5.27660934684614e-05!GO:0006164;purine nucleotide biosynthetic process;5.33497108147014e-05!GO:0016044;membrane organization and biogenesis;5.47680623512022e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.47859455980779e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;5.50606412001478e-05!GO:0005874;microtubule;5.69622683708138e-05!GO:0030120;vesicle coat;5.69622683708138e-05!GO:0030662;coated vesicle membrane;5.69622683708138e-05!GO:0030136;clathrin-coated vesicle;6.48565839308581e-05!GO:0007010;cytoskeleton organization and biogenesis;6.67506620937544e-05!GO:0009056;catabolic process;8.59089114482422e-05!GO:0005783;endoplasmic reticulum;9.21268818609203e-05!GO:0044440;endosomal part;9.72777736157919e-05!GO:0010008;endosome membrane;9.72777736157919e-05!GO:0043566;structure-specific DNA binding;9.84809667038706e-05!GO:0051168;nuclear export;0.000102217820175353!GO:0003713;transcription coactivator activity;0.00011429146889258!GO:0000151;ubiquitin ligase complex;0.000128876287796127!GO:0009259;ribonucleotide metabolic process;0.000145712000435624!GO:0006350;transcription;0.000152604905098576!GO:0009109;coenzyme catabolic process;0.000157837284863157!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000177795553716759!GO:0051179;localization;0.000180399803299108!GO:0051188;cofactor biosynthetic process;0.000181490600016406!GO:0006099;tricarboxylic acid cycle;0.000183345023019839!GO:0046356;acetyl-CoA catabolic process;0.000183345023019839!GO:0048523;negative regulation of cellular process;0.000184385886721605!GO:0030695;GTPase regulator activity;0.000214228436843495!GO:0006606;protein import into nucleus;0.000215396281445488!GO:0043005;neuron projection;0.000219405203574499!GO:0051170;nuclear import;0.000229927701895768!GO:0006613;cotranslational protein targeting to membrane;0.000254097560871652!GO:0005770;late endosome;0.000271630101836723!GO:0006084;acetyl-CoA metabolic process;0.000276331210245727!GO:0008026;ATP-dependent helicase activity;0.000280203430690798!GO:0003724;RNA helicase activity;0.00029547728969206!GO:0009260;ribonucleotide biosynthetic process;0.000299725099306801!GO:0006281;DNA repair;0.000302856744316527!GO:0051128;regulation of cellular component organization and biogenesis;0.000313678664911432!GO:0016197;endosome transport;0.000323537611708666!GO:0005905;coated pit;0.000327747804601088!GO:0016564;transcription repressor activity;0.000337829676749697!GO:0007049;cell cycle;0.000349306656504624!GO:0031323;regulation of cellular metabolic process;0.000366007668516475!GO:0005798;Golgi-associated vesicle;0.000373784036240291!GO:0043623;cellular protein complex assembly;0.000381673898370671!GO:0048489;synaptic vesicle transport;0.000420081687230666!GO:0031072;heat shock protein binding;0.000493766355468092!GO:0030036;actin cytoskeleton organization and biogenesis;0.000516436711071022!GO:0051187;cofactor catabolic process;0.000521996528539058!GO:0003729;mRNA binding;0.000534771054053837!GO:0032561;guanyl ribonucleotide binding;0.000536052543778139!GO:0019001;guanyl nucleotide binding;0.000536052543778139!GO:0005813;centrosome;0.00056355155150406!GO:0010468;regulation of gene expression;0.000592351263659935!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00059588199331085!GO:0004812;aminoacyl-tRNA ligase activity;0.00059588199331085!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00059588199331085!GO:0030532;small nuclear ribonucleoprotein complex;0.000632227729554413!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000656962996494957!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000744176224925398!GO:0042254;ribosome biogenesis and assembly;0.000759322002368908!GO:0009108;coenzyme biosynthetic process;0.000789640454078398!GO:0006402;mRNA catabolic process;0.000795470935632557!GO:0043038;amino acid activation;0.000811757284022139!GO:0006418;tRNA aminoacylation for protein translation;0.000811757284022139!GO:0043039;tRNA aminoacylation;0.000811757284022139!GO:0003697;single-stranded DNA binding;0.000943467324273689!GO:0065007;biological regulation;0.000974574743877316!GO:0006892;post-Golgi vesicle-mediated transport;0.00106910009055601!GO:0030118;clathrin coat;0.00106910009055601!GO:0008654;phospholipid biosynthetic process;0.00107657636421489!GO:0005815;microtubule organizing center;0.00112752843104551!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116158613273973!GO:0032774;RNA biosynthetic process;0.00116158613273973!GO:0051246;regulation of protein metabolic process;0.00119831114751597!GO:0006351;transcription, DNA-dependent;0.00127946660606003!GO:0051726;regulation of cell cycle;0.00130389675485115!GO:0031901;early endosome membrane;0.00138550634902038!GO:0006891;intra-Golgi vesicle-mediated transport;0.00157590907679246!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00186260046100284!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00201942623255558!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00201942623255558!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00201942623255558!GO:0006897;endocytosis;0.00204893573139582!GO:0010324;membrane invagination;0.00204893573139582!GO:0008022;protein C-terminus binding;0.00205072475019307!GO:0031252;leading edge;0.00205091207887721!GO:0016363;nuclear matrix;0.00209591831038301!GO:0022406;membrane docking;0.00223947565070723!GO:0048278;vesicle docking;0.00223947565070723!GO:0004221;ubiquitin thiolesterase activity;0.00227275995005696!GO:0006607;NLS-bearing substrate import into nucleus;0.00231545527092761!GO:0008601;protein phosphatase type 2A regulator activity;0.00233753761071169!GO:0000159;protein phosphatase type 2A complex;0.00235971301662053!GO:0030425;dendrite;0.00237274379966375!GO:0006612;protein targeting to membrane;0.00239128221504333!GO:0048519;negative regulation of biological process;0.00246639393283985!GO:0045449;regulation of transcription;0.00247030707447669!GO:0004674;protein serine/threonine kinase activity;0.00255763649756617!GO:0000074;regulation of progression through cell cycle;0.0026174966526313!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00261943699459497!GO:0019783;small conjugating protein-specific protease activity;0.00264204618939212!GO:0065004;protein-DNA complex assembly;0.002656908675351!GO:0008021;synaptic vesicle;0.00268396161503399!GO:0005793;ER-Golgi intermediate compartment;0.00287132805463676!GO:0046467;membrane lipid biosynthetic process;0.00296996981548946!GO:0044432;endoplasmic reticulum part;0.00322733987412607!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00326156952962805!GO:0006904;vesicle docking during exocytosis;0.00343523612046819!GO:0030133;transport vesicle;0.00363802527293455!GO:0016050;vesicle organization and biogenesis;0.00372567663347643!GO:0004843;ubiquitin-specific protease activity;0.00379027698432678!GO:0007269;neurotransmitter secretion;0.00385067644031112!GO:0051087;chaperone binding;0.00400370224597271!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00402529363742985!GO:0030029;actin filament-based process;0.00414511062654645!GO:0006364;rRNA processing;0.00425084312333318!GO:0003714;transcription corepressor activity;0.00425454442224634!GO:0030384;phosphoinositide metabolic process;0.0045782519725039!GO:0009892;negative regulation of metabolic process;0.0045782519725039!GO:0006355;regulation of transcription, DNA-dependent;0.00482367878551493!GO:0030742;GTP-dependent protein binding;0.00482495217157274!GO:0016740;transferase activity;0.00484554417862821!GO:0008186;RNA-dependent ATPase activity;0.0051429353443478!GO:0012506;vesicle membrane;0.00519996379945028!GO:0031124;mRNA 3'-end processing;0.00521560681360622!GO:0000059;protein import into nucleus, docking;0.0052950529322503!GO:0051427;hormone receptor binding;0.00535045849028693!GO:0030427;site of polarized growth;0.00540482707301152!GO:0030426;growth cone;0.00553639812794725!GO:0005938;cell cortex;0.00584301994461789!GO:0003746;translation elongation factor activity;0.00590092580538709!GO:0019904;protein domain specific binding;0.00603908526060081!GO:0006414;translational elongation;0.00629700305072242!GO:0051056;regulation of small GTPase mediated signal transduction;0.00678371911529997!GO:0003711;transcription elongation regulator activity;0.00696475710765665!GO:0006650;glycerophospholipid metabolic process;0.00702008050133141!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00703977979684018!GO:0004667;prostaglandin-D synthase activity;0.00703977979684018!GO:0050802;circadian sleep/wake cycle, sleep;0.00703977979684018!GO:0022410;circadian sleep/wake cycle process;0.00703977979684018!GO:0042749;regulation of circadian sleep/wake cycle;0.00703977979684018!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00722285336396603!GO:0006399;tRNA metabolic process;0.00726701936783366!GO:0016072;rRNA metabolic process;0.00728186570752142!GO:0006383;transcription from RNA polymerase III promoter;0.00734329972253453!GO:0006338;chromatin remodeling;0.00798496051473015!GO:0030132;clathrin coat of coated pit;0.00859285848343688!GO:0016481;negative regulation of transcription;0.00876248678992516!GO:0035257;nuclear hormone receptor binding;0.00894749673335505!GO:0007399;nervous system development;0.00900848816011871!GO:0016563;transcription activator activity;0.00931963770278706!GO:0006260;DNA replication;0.00934345512288312!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0094279826143697!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00956312336601803!GO:0003690;double-stranded DNA binding;0.00982922484194624!GO:0048500;signal recognition particle;0.00987165281288129!GO:0016301;kinase activity;0.00997596377265717!GO:0051540;metal cluster binding;0.00997596377265717!GO:0051536;iron-sulfur cluster binding;0.00997596377265717!GO:0048487;beta-tubulin binding;0.00997596377265717!GO:0019902;phosphatase binding;0.0102618852876171!GO:0006730;one-carbon compound metabolic process;0.0103268701290325!GO:0006818;hydrogen transport;0.0104289614838733!GO:0005868;cytoplasmic dynein complex;0.0104522491394728!GO:0030137;COPI-coated vesicle;0.0105244015152714!GO:0005789;endoplasmic reticulum membrane;0.010697654751317!GO:0000209;protein polyubiquitination;0.0108731331574189!GO:0004722;protein serine/threonine phosphatase activity;0.0110462287622205!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0112208132594053!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0113339385011513!GO:0055083;monovalent inorganic anion homeostasis;0.0113339385011513!GO:0055064;chloride ion homeostasis;0.0113339385011513!GO:0030644;cellular chloride ion homeostasis;0.0113339385011513!GO:0022402;cell cycle process;0.0113339385011513!GO:0030258;lipid modification;0.0122221120598069!GO:0006405;RNA export from nucleus;0.0126999550421121!GO:0051261;protein depolymerization;0.0127451175974777!GO:0043209;myelin sheath;0.0127954162634918!GO:0015992;proton transport;0.0127954162634918!GO:0007265;Ras protein signal transduction;0.0127954162634918!GO:0008154;actin polymerization and/or depolymerization;0.0130037035240006!GO:0005773;vacuole;0.013022486566106!GO:0004004;ATP-dependent RNA helicase activity;0.0131404946362091!GO:0031123;RNA 3'-end processing;0.0132775908136075!GO:0016790;thiolester hydrolase activity;0.0135733600758025!GO:0051920;peroxiredoxin activity;0.0136498770908105!GO:0015980;energy derivation by oxidation of organic compounds;0.0136677285515237!GO:0001578;microtubule bundle formation;0.0138975032059296!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0144583115558508!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0146079142435713!GO:0033673;negative regulation of kinase activity;0.0146113911228283!GO:0006469;negative regulation of protein kinase activity;0.0146113911228283!GO:0008312;7S RNA binding;0.0148756109315935!GO:0006611;protein export from nucleus;0.0151110553942268!GO:0044433;cytoplasmic vesicle part;0.0152902043499931!GO:0007019;microtubule depolymerization;0.0156468523228587!GO:0030658;transport vesicle membrane;0.0157678359936565!GO:0048167;regulation of synaptic plasticity;0.015814380143454!GO:0045892;negative regulation of transcription, DNA-dependent;0.0160027695521778!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0160110175654774!GO:0019887;protein kinase regulator activity;0.0161909988808565!GO:0045603;positive regulation of endothelial cell differentiation;0.0166553010273821!GO:0006401;RNA catabolic process;0.0168704233686689!GO:0045055;regulated secretory pathway;0.0168704233686689!GO:0031324;negative regulation of cellular metabolic process;0.0174685773278866!GO:0006895;Golgi to endosome transport;0.0174685773278866!GO:0051539;4 iron, 4 sulfur cluster binding;0.0175018626586313!GO:0016584;nucleosome positioning;0.0175018626586313!GO:0005667;transcription factor complex;0.0179104160104356!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0179122281688456!GO:0008139;nuclear localization sequence binding;0.0180222121685581!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0180222121685581!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0180222121685581!GO:0000314;organellar small ribosomal subunit;0.0180837828798597!GO:0005763;mitochondrial small ribosomal subunit;0.0180837828798597!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0180837828798597!GO:0045047;protein targeting to ER;0.0180837828798597!GO:0016311;dephosphorylation;0.0183936133499659!GO:0035258;steroid hormone receptor binding;0.0193966910235231!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0198923271113956!GO:0003899;DNA-directed RNA polymerase activity;0.0203401547654796!GO:0016585;chromatin remodeling complex;0.0204833875754847!GO:0008047;enzyme activator activity;0.0205041898812911!GO:0005048;signal sequence binding;0.0205041898812911!GO:0009719;response to endogenous stimulus;0.0206531890736674!GO:0030027;lamellipodium;0.0209499470156191!GO:0032259;methylation;0.0212625248943862!GO:0005791;rough endoplasmic reticulum;0.0217367986442322!GO:0044448;cell cortex part;0.0220423932991042!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.022146737988511!GO:0007030;Golgi organization and biogenesis;0.0221675171384753!GO:0003725;double-stranded RNA binding;0.0230791996769658!GO:0050811;GABA receptor binding;0.0231677584282522!GO:0019894;kinesin binding;0.0231864258298731!GO:0046488;phosphatidylinositol metabolic process;0.0232564091687084!GO:0030119;AP-type membrane coat adaptor complex;0.0235744065561695!GO:0007034;vacuolar transport;0.0248507349785511!GO:0030134;ER to Golgi transport vesicle;0.0249638709507018!GO:0030660;Golgi-associated vesicle membrane;0.025094982668834!GO:0050803;regulation of synapse structure and activity;0.0254703927842563!GO:0032011;ARF protein signal transduction;0.0257706954209399!GO:0032012;regulation of ARF protein signal transduction;0.0257706954209399!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0259641717075358!GO:0005741;mitochondrial outer membrane;0.026094161760951!GO:0035035;histone acetyltransferase binding;0.0266998234078848!GO:0043086;negative regulation of catalytic activity;0.026878710850484!GO:0043021;ribonucleoprotein binding;0.026878710850484!GO:0008250;oligosaccharyl transferase complex;0.0269445063318603!GO:0005839;proteasome core complex (sensu Eukaryota);0.0269674095940977!GO:0001508;regulation of action potential;0.0269944066728649!GO:0051789;response to protein stimulus;0.0270627808815153!GO:0006986;response to unfolded protein;0.0270627808815153!GO:0030127;COPII vesicle coat;0.0270955280274183!GO:0012507;ER to Golgi transport vesicle membrane;0.0270955280274183!GO:0007017;microtubule-based process;0.0287534938367274!GO:0030131;clathrin adaptor complex;0.0291912905977256!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0294763138096982!GO:0019208;phosphatase regulator activity;0.0295729186342565!GO:0016859;cis-trans isomerase activity;0.0299869199043085!GO:0006887;exocytosis;0.0304779157111823!GO:0051348;negative regulation of transferase activity;0.0307179445210255!GO:0001505;regulation of neurotransmitter levels;0.0307238924210004!GO:0016836;hydro-lyase activity;0.0309391468007351!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0311132596442422!GO:0006643;membrane lipid metabolic process;0.0314532283460534!GO:0019207;kinase regulator activity;0.0314900350848838!GO:0031902;late endosome membrane;0.031615824146337!GO:0004183;carboxypeptidase E activity;0.031644908968358!GO:0030070;insulin processing;0.031644908968358!GO:0043414;biopolymer methylation;0.0317112501623601!GO:0005762;mitochondrial large ribosomal subunit;0.0319478845044917!GO:0000315;organellar large ribosomal subunit;0.0319478845044917!GO:0007242;intracellular signaling cascade;0.032199342414558!GO:0016791;phosphoric monoester hydrolase activity;0.0322143321790241!GO:0004721;phosphoprotein phosphatase activity;0.0323523852025169!GO:0005869;dynactin complex;0.0326400412841588!GO:0046839;phospholipid dephosphorylation;0.0336507136151048!GO:0046474;glycerophospholipid biosynthetic process;0.0342143049739486!GO:0018065;protein-cofactor linkage;0.0350163020799496!GO:0030659;cytoplasmic vesicle membrane;0.0353951775557119!GO:0003682;chromatin binding;0.0354614707334168!GO:0031371;ubiquitin conjugating enzyme complex;0.0355410098317216!GO:0046489;phosphoinositide biosynthetic process;0.0362498516771297!GO:0007004;telomere maintenance via telomerase;0.036477531498592!GO:0005100;Rho GTPase activator activity;0.0375716599466952!GO:0005875;microtubule associated complex;0.0375716599466952!GO:0008180;signalosome;0.037985566700123!GO:0042585;germinal vesicle;0.0380017068660866!GO:0016579;protein deubiquitination;0.0382091686537596!GO:0042158;lipoprotein biosynthetic process;0.0387051859425062!GO:0003779;actin binding;0.0393325945003089!GO:0005096;GTPase activator activity;0.0393885895650667!GO:0007612;learning;0.0393892867330414!GO:0030663;COPI coated vesicle membrane;0.0393892867330414!GO:0030126;COPI vesicle coat;0.0393892867330414!GO:0046870;cadmium ion binding;0.0396853926912833!GO:0031114;regulation of microtubule depolymerization;0.0396853926912833!GO:0007026;negative regulation of microtubule depolymerization;0.0396853926912833!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0397705924539448!GO:0033043;regulation of organelle organization and biogenesis;0.0397705924539448!GO:0051252;regulation of RNA metabolic process;0.0399963426407046!GO:0005637;nuclear inner membrane;0.0413816070430207!GO:0008286;insulin receptor signaling pathway;0.0413981245950915!GO:0017016;Ras GTPase binding;0.0414549455327656!GO:0004860;protein kinase inhibitor activity;0.0415108086371813!GO:0030867;rough endoplasmic reticulum membrane;0.0427323421139449!GO:0016272;prefoldin complex;0.0431482161765244!GO:0016251;general RNA polymerase II transcription factor activity;0.0432886377948869!GO:0031497;chromatin assembly;0.043856235585744!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.043884535588411!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.043884535588411!GO:0015002;heme-copper terminal oxidase activity;0.043884535588411!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.043884535588411!GO:0004129;cytochrome-c oxidase activity;0.043884535588411!GO:0016569;covalent chromatin modification;0.043884535588411!GO:0004576;oligosaccharyl transferase activity;0.0441574565149198!GO:0030911;TPR domain binding;0.0454277018772002!GO:0006378;mRNA polyadenylation;0.0455389370503321!GO:0016779;nucleotidyltransferase activity;0.0455482263265369!GO:0006665;sphingolipid metabolic process;0.046725746570408!GO:0031968;organelle outer membrane;0.0467926096348173!GO:0046903;secretion;0.0472681973727349!GO:0005955;calcineurin complex;0.047342176271229!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0473883012970345!GO:0042026;protein refolding;0.0475697741611725!GO:0004298;threonine endopeptidase activity;0.047782979980452!GO:0006470;protein amino acid dephosphorylation;0.0480594107003767!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0491732217448831
|sample_id=10173
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cerebellum
|top_motifs=FOXM1:3.85239463193;RORA:3.7877920876;DBP:3.53992084384;ARID5B:3.48874921133;AHR_ARNT_ARNT2:3.46577617539;REST:3.44382346658;ZFP161:3.38739608417;NFIX:3.06278193419;PAX4:2.858485899;CUX2:2.82900276003;PDX1:2.77687198663;ATF2:2.74345335923;MED-1{core}:2.73000233939;SMAD1..7,9:2.65242761028;MZF1:2.62571688748;POU6F1:2.59986477913;PAX6:2.54333200107;FOXQ1:2.36212585059;NRF1:2.31962035864;BREu{core}:2.31713444809;PRDM1:2.31666681183;STAT1,3:2.2659875222;SOX5:2.2373094326;ZBTB6:2.21592233105;ALX1:2.12675386738;MTE{core}:2.08120433657;GATA4:2.05663496074;NKX2-3_NKX2-5:2.03735881023;OCT4_SOX2{dimer}:2.0345895847;MYFfamily:1.99284315656;POU5F1:1.97466793199;NHLH1,2:1.90718350594;VSX1,2:1.90048796187;GTF2I:1.87467379903;MTF1:1.80923995674;RREB1:1.78972552404;TGIF1:1.77756414955;NFIL3:1.72929673934;GCM1,2:1.71680309367;RBPJ:1.66816488855;NKX3-2:1.63066233688;LMO2:1.58048375302;XBP1:1.57773316168;GFI1B:1.57443941865;CDC5L:1.562684361;POU3F1..4:1.52436554415;RFX2..5_RFXANK_RFXAP:1.52273385013;SOX2:1.45249086879;KLF4:1.43564543211;HIC1:1.39306905976;HOXA9_MEIS1:1.38445132317;AR:1.34678875566;ADNP_IRX_SIX_ZHX:1.33704478606;SOX{8,9,10}:1.32651141547;PRRX1,2:1.3238522501;SOX17:1.31410911119;LEF1_TCF7_TCF7L1,2:1.30639076646;HMGA1,2:1.27685400974;RFX1:1.25819806917;TFAP2B:1.25567671856;PATZ1:1.21233319226;NANOG:1.20458338648;SPZ1:1.1622631088;ZNF143:1.14757286755;MYOD1:1.13141613546;ONECUT1,2:1.12915394628;EGR1..3:1.12706115611;PAX8:1.08211705732;EVI1:1.00530477024;HAND1,2:0.995027603279;MEF2{A,B,C,D}:0.98946761648;TFDP1:0.968004971071;FOX{I1,J2}:0.949143796451;ZEB1:0.948101772099;JUN:0.944677178898;MAFB:0.940842004565;HOX{A4,D4}:0.937430906731;YY1:0.921032502293;CRX:0.913593591483;ESRRA:0.844814991987;FOX{D1,D2}:0.843071420766;GZF1:0.840474402461;ATF5_CREB3:0.837902614731;EP300:0.806314832988;SREBF1,2:0.804399699386;MAZ:0.801893914924;LHX3,4:0.797397515457;NR3C1:0.783749902871;FOX{F1,F2,J1}:0.783237697385;BPTF:0.698882892091;MYBL2:0.635688412238;NKX2-1,4:0.564372183948;CREB1:0.559673593576;AIRE:0.537056212899;FOXN1:0.521634506279;ATF6:0.517395037961;FOXO1,3,4:0.501203748824;PAX5:0.451676260051;NFY{A,B,C}:0.425221730053;POU1F1:0.420485351252;TLX1..3_NFIC{dimer}:0.414696117237;GFI1:0.359531404218;PAX2:0.358529298471;ZNF423:0.334754851221;TLX2:0.32413546784;ATF4:0.317252215532;IKZF2:0.31167127657;ZNF384:0.30601195408;TOPORS:0.29296119062;FOXP1:0.240315840291;HIF1A:0.237232291656;NFE2L1:0.202870191442;FOXP3:0.174562709807;SNAI1..3:0.146136162401;ZBTB16:0.126229293538;FOXA2:0.0852655137649;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0486444270804;STAT5{A,B}:0.0283495678129;FOXL1:-0.0647348861598;SP1:-0.0835726570386;NKX3-1:-0.163817455682;GTF2A1,2:-0.204056268159;PAX3,7:-0.225928253211;ZIC1..3:-0.230328189166;PBX1:-0.268940764218;UFEwm:-0.304562235882;TEF:-0.31547242902;NR5A1,2:-0.326109191888;IRF7:-0.353320608382;ZNF238:-0.358062438516;NANOG{mouse}:-0.374824146999;HBP1_HMGB_SSRP1_UBTF:-0.390196839568;NFE2L2:-0.437784500666;TFAP2{A,C}:-0.471275685562;NKX6-1,2:-0.513834804353;XCPE1{core}:-0.542315990971;HNF4A_NR2F1,2:-0.553415776395;PITX1..3:-0.587409027535;SPIB:-0.59305426305;PAX1,9:-0.594180229337;T:-0.603868340289;FOSL2:-0.608128309862;SPI1:-0.612006266717;ESR1:-0.613403134127;HNF1A:-0.615185558334;E2F1..5:-0.654714781739;GATA6:-0.660634910231;IRF1,2:-0.704025598731;NFATC1..3:-0.709012409122;HOX{A6,A7,B6,B7}:-0.709873980944;CEBPA,B_DDIT3:-0.714805302038;NFE2:-0.817788646756;STAT2,4,6:-0.842757394337;HOX{A5,B5}:-0.84567029116;FOS_FOS{B,L1}_JUN{B,D}:-0.891050479757;DMAP1_NCOR{1,2}_SMARC:-0.908011511015;BACH2:-0.921122440559;EBF1:-0.930900604259;HLF:-0.99698043493;CDX1,2,4:-1.00889000359;NFKB1_REL_RELA:-1.02600192168;ELK1,4_GABP{A,B1}:-1.05344159536;ETS1,2:-1.05440049613;TEAD1:-1.12633190688;PPARG:-1.13628564934;RUNX1..3:-1.1578629081;HMX1:-1.1756225571;TFCP2:-1.20885130617;NR1H4:-1.24678388062;IKZF1:-1.27519307496;HES1:-1.28637997487;TP53:-1.34050823888;POU2F1..3:-1.34713898715;MYB:-1.39016184604;TAL1_TCF{3,4,12}:-1.46761493121;GLI1..3:-1.50996873222;RXR{A,B,G}:-1.53969654227;NR6A1:-1.55149985661;TFAP4:-1.58315740348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.61079623898;ELF1,2,4:-1.62349766876;TBX4,5:-1.63011977757;FOXD3:-1.6632584482;HSF1,2:-1.69090052957;ALX4:-1.75434217916;RXRA_VDR{dimer}:-1.78114794746;TBP:-1.78523871184;bHLH_family:-1.78934591207;SRF:-2.07377647953;NKX2-2,8:-2.14712332256;ZNF148:-2.26106136089;EN1,2:-2.28549572316
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10173-103C2;search_select_hide=table117:FF:10173-103C2
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:cerebellum - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13799
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebellum
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005550
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13799 CAGE DRX008631 DRR009503
Accession ID Hg19

Library idBAMCTSS
CNhs13799 DRZ000928 DRZ002313
Accession ID Hg38

Library idBAMCTSS
CNhs13799 DRZ012278 DRZ013663
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.284
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
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C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13799

Jaspar motifP-value
MA0002.20.0573
MA0003.10.233
MA0004.10.21
MA0006.10.153
MA0007.10.263
MA0009.10.384
MA0014.10.639
MA0017.10.0122
MA0018.20.0412
MA0019.10.961
MA0024.10.413
MA0025.10.104
MA0027.10.982
MA0028.10.11
MA0029.10.212
MA0030.10.349
MA0031.10.476
MA0035.20.0735
MA0038.10.112
MA0039.20.15
MA0040.10.97
MA0041.10.167
MA0042.10.42
MA0043.10.623
MA0046.10.129
MA0047.20.111
MA0048.10.241
MA0050.11.22879e-4
MA0051.10.00257
MA0052.10.186
MA0055.10.0396
MA0057.10.453
MA0058.10.227
MA0059.10.063
MA0060.10.0303
MA0061.10.0121
MA0062.20.00263
MA0065.20.00239
MA0066.10.129
MA0067.10.701
MA0068.10.636
MA0069.10.916
MA0070.10.411
MA0071.10.255
MA0072.10.427
MA0073.10.243
MA0074.10.287
MA0076.10.172
MA0077.10.662
MA0078.10.764
MA0079.20.693
MA0080.21.50382e-9
MA0081.10.0617
MA0083.10.00119
MA0084.10.852
MA0087.10.85
MA0088.10.496
MA0090.10.0365
MA0091.10.624
MA0092.10.448
MA0093.10.233
MA0099.21.60268e-16
MA0100.10.738
MA0101.10.00407
MA0102.20.0373
MA0103.10.564
MA0104.20.739
MA0105.10.0116
MA0106.10.0266
MA0107.10.00402
MA0108.20.108
MA0111.10.724
MA0112.20.0037
MA0113.10.477
MA0114.10.00682
MA0115.10.689
MA0116.10.0188
MA0117.10.895
MA0119.10.157
MA0122.10.409
MA0124.10.757
MA0125.10.205
MA0131.10.895
MA0135.10.0785
MA0136.12.85012e-13
MA0137.20.511
MA0138.20.108
MA0139.10.795
MA0140.10.0449
MA0141.10.0214
MA0142.10.138
MA0143.10.129
MA0144.10.375
MA0145.10.141
MA0146.10.0247
MA0147.10.535
MA0148.10.138
MA0149.10.0681
MA0150.14.57065e-4
MA0152.10.494
MA0153.10.364
MA0154.10.0746
MA0155.10.306
MA0156.11.33623e-8
MA0157.10.92
MA0159.10.00534
MA0160.10.106
MA0162.10.101
MA0163.12.80036e-4
MA0164.10.809
MA0258.10.0442
MA0259.10.967



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13799

Novel motifP-value
10.0791
100.073
1000.404
1010.677
1020.551
1030.0538
1040.0625
1050.121
1060.00472
1070.0227
1080.978
1099.90449e-4
110.0195
1100.0845
1110.372
1120.698
1130.316
1140.271
1150.759
1160.139
1170.00916
1180.248
1190.481
120.748
1200.176
1210.343
1220.674
1230.627
1240.2
1250.559
1260.047
1270.586
1280.165
1290.597
137.009e-4
1300.13
1310.0946
1320.91
1330.0238
1340.516
1350.415
1367.97203e-4
1370.348
1380.83
1390.266
140.615
1400.676
1410.837
1420.394
1430.0731
1440.875
1450.096
1460.391
1470.885
1480.0306
1490.123
150.0718
1500.171
1510.668
1520.0135
1530.99
1540.706
1550.426
1560.927
1570.343
1580.0714
1590.0328
160.0794
1600.201
1610.282
1620.819
1630.982
1640.0218
1650.0326
1660.645
1670.963
1680.516
1690.0228
170.0764
180.253
190.29
20.783
200.156
210.024
220.173
230.195
240.0418
250.54
264.09607e-5
270.841
280.869
290.0296
30.0502
300.964
310.962
320.0251
330.0594
340.598
350.88
360.325
370.0242
380.368
390.118
40.933
400.0598
410.452
420.359
430.128
440.178
450.722
460.0571
470.0805
480.0463
490.274
50.795
500.164
510.496
520.242
530.913
540.364
550.606
560.329
570.39
580.459
590.0494
60.816
600.0172
610.0646
620.231
630.083
640.401
650.294
660.252
670.324
680.326
690.337
70.0505
700.013
710.0128
720.259
730.00901
740.868
750.0526
760.418
770.0582
780.0218
790.346
80.0242
800.202
810.535
820.805
830.119
840.544
850.122
860.24
872.38143e-4
880.847
890.274
90.398
900.298
910.98
920.702
930.398
940.414
950.00769
960.898
970.686
980.721
990.228



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13799


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)

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