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{{f5samples
{{f5samples
|id=FF:11321-117D7
|DRA_sample_Accession=CAGE@SAMD00005751
|name=Skeletal Muscle Satellite Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005751
|sample_id=11321
|accession_numbers=CAGE;DRX008459;DRR009331;DRZ000756;DRZ002141;DRZ012106;DRZ013491
|rna_tube_id=117D7
|accession_numbers_RNASeq=sRNA-Seq;DRX037068;DRR041434;DRZ007076
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|rna_position=D7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=514
|rna_catalog_number=SC3515
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=skeletal muscle
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=satellite cell, skeletal muscle
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.831
|sample_note=
|profile_hcage=CNhs11964,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10005,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000188,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000548,CL:0000594,CL:0000680,CL:0000723,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000165
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.70!49.31!EBF2;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.60!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.61!106.59!TWIST1;;chr7:15726296..15726315,-!p1@MEOX2!1.56!35.53!MEOX2;;chr1:203055129..203055147,-!p1@MYOG!1.53!32.92!MYOG;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.81!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.34!76.86!SIX1;;chr12:54378923..54378966,+!p1@HOXC10!1.34!20.88!HOXC10;;chr6:85474299..85474324,-!p1@TBX18!1.33!35.82!TBX18;;chr7:15726243..15726293,-!p2@MEOX2!1.32!19.72!MEOX2;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.19!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.23!42.49!HMGA2;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.62!ZBTB16;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.97!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.17!34.51!EBF1;;chr12:54379029..54379057,+!p2@HOXC10!1.16!13.34!HOXC10;;chr21:47063625..47063658,+!p1@PCBP3!1.15!56.99!PCBP3;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.41!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.11!11.89!HAND2;;chr12:66218598..66218645,+!p2@HMGA2!1.09!52.79!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.00!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.55!PITX1;;chr19:13134772..13134822,+!p2@NFIX!1.08!16.39!NFIX;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.54!CREB3L1;;chr3:25470156..25470227,+!p2@RARB!1.07!10.88!RARB;;chr15:42749722..42749739,-!p2@ZFP106!1.06!18.71!ZFP106;;chr12:54393880..54393962,+!p1@HOXC9!1.06!10.44!HOXC9;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.21!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!1.05!15.08!HMGA2;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.64!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.69!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.08!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.85!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.85!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.98!179.24!SNAI2;;chr9:16870659..16870675,-!p2@BNC2!0.95!9.72!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.95!8.99!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.41!GLIS1;;chr17:61919985..61920012,-!p3@SMARCD2!0.91!18.13!SMARCD2;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.71!HIC1;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.85!BCL3;;chr11:113930291..113930339,+!p2@ZBTB16!0.87!10.88!ZBTB16;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.38!HIF3A;;chr20:30193083..30193098,+!p1@ID1!0.86!541.35!ID1;;chr7:15725757..15725828,-!p5@MEOX2!0.85!6.09!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.84!5.95!HOXD8;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.80!SOX11;;chr18:22932080..22932170,-!p1@ZNF521!0.82!25.23!ZNF521;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.38!PPARG;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.51!HOXC5;;chr3:12329358..12329393,+!p3@PPARG!0.79!13.49!PPARG;;chr6:45296048..45296082,+!p1@RUNX2!0.79!5.95!RUNX2;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.51!SHOX2;;chr9:4300050..4300118,-!p1@GLIS3!0.78!35.53!GLIS3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.39!KLF9;;chr5:158527104..158527135,-!p4@EBF1!0.78!5.08!EBF1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.08!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.77!4.93!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.93!HOXC8;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.79!HOXC10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.79!HAND2;;chr7:15726220..15726236,-!p4@MEOX2!0.76!4.79!MEOX2;;chr8:48650715..48650735,-!p1@CEBPD!0.75!651.85!CEBPD;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr12:54694758..54694805,-!p1@NFE2!0.74!5.51!NFE2;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.22!SIX1;;chr7:15726176..15726191,-!p3@MEOX2!0.74!4.50!MEOX2;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.98!TWIST2;;chr11:113930401..113930422,+!p3@ZBTB16!0.73!4.35!ZBTB16;;chr8:77593474..77593612,+!p1@ZFHX4!0.72!20.01!ZFHX4;;chr14:24837368..24837401,+!p1@NFATC4!0.72!10.88!NFATC4;;chr3:12329397..12329433,+!p2@PPARG!0.72!10.44!PPARG;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.21!HOXA10;;chr6:34204921..34204939,+!p3@HMGA1!0.71!139.65!HMGA1;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!124.57!TSC22D3;;chr11:47279504..47279563,+!p1@NR1H3!0.71!10.15!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.18!OSR1;;chr19:13134457..13134462,+!p5@NFIX!0.70!7.69!NFIX;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.06!BNC2;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.06!HOXC5;;chr1:119530493..119530572,-!p1@TBX15!0.70!4.06!TBX15;;chr1:61547894..61547968,+!p2@NFIA!0.69!12.62!NFIA;;chr6:34204672..34204692,+!p1@HMGA1!0.68!488.85!HMGA1;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.77!SIX2;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.67!TBX3;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.35!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.62!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.06!PRRX1;;chr2:208030647..208030689,-!p1@KLF7!0.66!34.22!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.27!ZNF436;;chr3:24536253..24536328,-!p1@THRB!0.66!7.25!THRB;;chr5:158526459..158526481,-!p2@EBF1!0.66!4.93!EBF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.65!4.79!TSHZ2;;chr11:17741111..17741124,+!p1@MYOD1!0.65!3.48!MYOD1;;chr17:17726907..17726958,-!p2@SREBF1!0.64!24.22!SREBF1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.34!RFX8;;chr5:134369879..134369898,-!p2@PITX1!0.64!3.34!PITX1;;chr9:16728327..16728338,-!p5@BNC2!0.64!3.34!BNC2;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.87!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.63!7.11!RCOR2;;chr17:61920023..61920110,-!p1@SMARCD2!0.62!53.80!SMARCD2;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.41!KLF9;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.11!HIF1A;;chr6:45390077..45390105,+!p9@RUNX2!0.62!4.21!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.19!HOXA11;;chr1:158969752..158969780,+!p6@IFI16!0.61!5.95!IFI16;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.80!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.05!TBX18;;chr1:170632477..170632506,+!p6@PRRX1!0.61!3.05!PRRX1;;chr4:299227..299272,-!p1@ZNF732!0.61!3.05!ZNF732;;chr11:65687362..65687436,+!p3@DRAP1!0.60!16.10!DRAP1;;chr8:116681409..116681431,-!p2@TRPS1!0.60!9.43!TRPS1;;chr6:45390025..45390076,+!p2@RUNX2!0.60!8.12!RUNX2;;chr7:15726206..15726217,-!p6@MEOX2!0.59!2.90!MEOX2;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.90!HOXC9;;chr3:25470062..25470084,+!p4@RARB!0.59!2.90!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.76!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.58!9.43!KLF12;;chr7:42276787..42276815,-!p1@GLI3!0.57!8.56!GLI3;;chr1:23696448..23696453,-!p5@ZNF436!0.57!3.48!ZNF436;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.76!NPAS1;;chr18:22932004..22932021,-!p2@ZNF521!0.57!2.76!ZNF521;;chr8:93115584..93115642,-!p5@RUNX1T1!0.57!2.76!RUNX1T1;;chr21:47063590..47063597,+!p2@PCBP3!0.57!2.76!PCBP3;;chr3:24536332..24536358,-!p2@THRB!0.57!2.76!THRB;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.28!GLI3;;chr1:221052776..221052799,+!p1@HLX!0.56!5.37!HLX;;chr2:166326200..166326216,+!p1@CSRNP3!0.56!4.21!CSRNP3;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.34!TBX18;;chr8:30890810..30890880,-!p1@PURG!0.56!2.61!PURG;;chr9:16728161..16728185,-!p4@BNC2!0.56!2.61!BNC2;;chr11:46299443..46299459,+!p4@CREB3L1!0.56!2.61!CREB3L1;;chr1:119530706..119530736,-!p3@TBX15!0.56!2.61!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.32!MXD3;;chr5:124082322..124082364,-!p1@ZNF608!0.55!7.69!ZNF608;;chr5:178368186..178368238,+!p1@ZNF454!0.55!5.22!ZNF454;;chr20:50721803..50721857,-!p2@ZFP64!0.55!4.50!ZFP64;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.05!BNC1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!35.24!TAX1BP3;;chr10:63853436..63853442,+!p4@ARID5B!0.54!16.24!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.54!13.34!ZBTB20;;chr1:158979872..158979898,+!p3@IFI16!0.54!9.14!IFI16;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.24!SMARCD3;;chr11:65686802..65686818,+!p6@DRAP1!0.54!4.79!DRAP1;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.47!PKNOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.47!HOXA7;;chr8:77593750..77593757,+!p3@ZFHX4!0.54!2.47!ZFHX4;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.47!PRRX1;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.25!NFIB;;chr6:28411241..28411284,-!p1@ZSCAN23!0.53!9.14!ZSCAN23;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.92!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.90!NR2F2;;chr8:116680215..116680245,-!p6@TRPS1!0.52!4.06!TRPS1;;chr3:42947600..42947680,+!p1@ZNF662!0.52!3.63!ZNF662;;chr2:119604456..119604501,-!p2@EN1!0.52!2.32!EN1;;chr1:170632723..170632739,+!p8@PRRX1!0.52!2.32!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.52!2.32!KLF17;;chr5:158526756..158526797,-!p3@EBF1!0.52!2.32!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!0.52!2.32!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.52!2.32!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.51!8.85!AHRR;;chr9:14082760..14082775,-!p6@NFIB!0.51!4.21!NFIB;;chr22:42269885..42269899,+!p4@SREBF2!0.51!3.77!SREBF2;;chr8:128748308..128748324,+!p2@MYC!0.50!79.47!MYC;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.56!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.50!2.18!FOXL1;;chr2:214014959..214015006,-!p4@IKZF2!0.50!2.18!IKZF2;;chr11:113930477..113930488,+!p4@ZBTB16!0.50!2.18!ZBTB16;;chr12:54366975..54367001,+!p1@HOXC11!0.50!2.18!HOXC11;;chr12:54380036..54380091,+!p4@HOXC10!0.50!2.18!HOXC10;;chr1:170633245..170633256,+!p14@PRRX1!0.50!2.18!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.50!2.18!HEYL;;chr14:62162224..62162254,+!p1@HIF1A!0.49!409.09!HIF1A;;chr12:53614115..53614154,-!p1@RARG!0.49!14.50!RARG;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.47!MEIS2;;chr8:57123815..57123867,-!p1@PLAG1!0.49!11.02!PLAG1;;chr1:61547781..61547809,+!p5@NFIA!0.49!5.08!NFIA;;chr7:86782094..86782108,+!p5@DMTF1!0.49!3.92!DMTF1;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.63!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.49!2.47!NR1H3;;chr1:23696348..23696363,-!p4@ZNF436!0.49!2.47!ZNF436;;chr17:1958388..1958404,+!p1@HIC1!0.48!16.82!HIC1;;chr20:45142154..45142227,-!p1@ZNF334!0.48!4.79!ZN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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.ctss.bed.gz
|id=FF:11321-117D7
|is_a=EFO:0002091;;FF:0000165
|is_obsolete=
|library_id=CNhs11964
|library_id_phase_based=2:CNhs11964
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11321
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GAGTGG.11321
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11321
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GAGTGG.11321
|name=Skeletal Muscle Satellite Cells, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11964,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
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|rna_box=117
|rna_catalog_number=SC3515
|rna_concentration=0.831
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=514
|rna_od260/230=
|rna_od260/280=
|rna_position=D7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117D7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.GAGTGG
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=satellite cell, skeletal muscle
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.41435578935862e-267!GO:0005737;cytoplasm;4.82163562446876e-213!GO:0043226;organelle;1.4174472911305e-210!GO:0043229;intracellular organelle;4.40359968944517e-210!GO:0043231;intracellular membrane-bound organelle;2.53798739899499e-199!GO:0043227;membrane-bound organelle;3.4485908141209e-199!GO:0044422;organelle part;5.24141614835883e-157!GO:0044446;intracellular organelle part;2.63286943866879e-155!GO:0044444;cytoplasmic part;6.92844776981353e-151!GO:0032991;macromolecular complex;1.21449937321692e-106!GO:0044237;cellular metabolic process;4.25146019735042e-90!GO:0044238;primary metabolic process;1.20756171921459e-89!GO:0030529;ribonucleoprotein complex;2.18635292052521e-88!GO:0043170;macromolecule metabolic process;1.64488459479434e-79!GO:0005515;protein binding;2.94217990885841e-78!GO:0005634;nucleus;2.08928988355692e-77!GO:0043233;organelle lumen;2.36511553183388e-77!GO:0031974;membrane-enclosed lumen;2.36511553183388e-77!GO:0005739;mitochondrion;1.09582437969378e-76!GO:0044428;nuclear part;8.03084672204471e-74!GO:0003723;RNA binding;4.87962308090143e-67!GO:0005840;ribosome;4.69212296154458e-55!GO:0043234;protein complex;8.58464934888078e-55!GO:0016043;cellular component organization and biogenesis;3.61822807586537e-54!GO:0044429;mitochondrial part;1.3080538308216e-50!GO:0031090;organelle membrane;1.56330035397523e-50!GO:0006412;translation;1.74582597688853e-48!GO:0003735;structural constituent of ribosome;4.78670898598478e-48!GO:0019538;protein metabolic process;5.23433503316634e-47!GO:0006396;RNA processing;2.42142420043034e-45!GO:0031967;organelle envelope;4.11464280625926e-44!GO:0031975;envelope;8.23276194388762e-44!GO:0031981;nuclear lumen;9.98815906458812e-43!GO:0009058;biosynthetic process;1.49548164566048e-42!GO:0043283;biopolymer metabolic process;3.4560795114196e-42!GO:0033036;macromolecule localization;3.582256096813e-42!GO:0044260;cellular macromolecule metabolic process;9.39234635957818e-42!GO:0033279;ribosomal subunit;1.55425702255611e-41!GO:0015031;protein transport;2.32901806879296e-41!GO:0043228;non-membrane-bound organelle;3.17840112471125e-41!GO:0043232;intracellular non-membrane-bound organelle;3.17840112471125e-41!GO:0010467;gene expression;9.42815424177695e-41!GO:0044267;cellular protein metabolic process;1.35832072406825e-40!GO:0005829;cytosol;1.04833821292741e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.57604879037516e-39!GO:0044249;cellular biosynthetic process;2.01021546358134e-39!GO:0008104;protein localization;9.04822377412021e-39!GO:0045184;establishment of protein localization;1.89946002994834e-38!GO:0006996;organelle organization and biogenesis;8.4894566417964e-38!GO:0016071;mRNA metabolic process;9.04588004791102e-38!GO:0009059;macromolecule biosynthetic process;5.73239533124715e-37!GO:0046907;intracellular transport;9.74461950028403e-36!GO:0008380;RNA splicing;3.21870349348712e-35!GO:0065003;macromolecular complex assembly;4.4615811460261e-34!GO:0022607;cellular component assembly;1.38792425008131e-32!GO:0005740;mitochondrial envelope;5.57392900702354e-32!GO:0006397;mRNA processing;7.6164289310958e-32!GO:0019866;organelle inner membrane;2.13128218395868e-30!GO:0031966;mitochondrial membrane;2.95940448244439e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.87648468735213e-30!GO:0006886;intracellular protein transport;1.54453721439822e-28!GO:0005743;mitochondrial inner membrane;2.73474133061979e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.2538640106603e-28!GO:0006259;DNA metabolic process;7.99247549389628e-28!GO:0005654;nucleoplasm;4.63036279236879e-27!GO:0005681;spliceosome;1.06068860067172e-24!GO:0031980;mitochondrial lumen;3.40648046162963e-23!GO:0005759;mitochondrial matrix;3.40648046162963e-23!GO:0044445;cytosolic part;3.40648046162963e-23!GO:0051641;cellular localization;5.72144135640163e-23!GO:0003676;nucleic acid binding;7.19247224081969e-23!GO:0051649;establishment of cellular localization;8.60315015521987e-23!GO:0006119;oxidative phosphorylation;1.3633477979894e-22!GO:0015934;large ribosomal subunit;6.24428900413693e-22!GO:0044451;nucleoplasm part;7.37989817337685e-22!GO:0000166;nucleotide binding;8.9547029453233e-22!GO:0007049;cell cycle;9.07466775506248e-22!GO:0044455;mitochondrial membrane part;1.95419813959212e-21!GO:0015935;small ribosomal subunit;1.0184345716055e-20!GO:0006457;protein folding;3.65048332249655e-20!GO:0012505;endomembrane system;3.94411740192315e-20!GO:0005783;endoplasmic reticulum;8.38219220138206e-20!GO:0005746;mitochondrial respiratory chain;1.93860532455228e-18!GO:0048770;pigment granule;2.85710176130264e-18!GO:0042470;melanosome;2.85710176130264e-18!GO:0051186;cofactor metabolic process;4.81732920489356e-18!GO:0016070;RNA metabolic process;2.3758143342722e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.27116795971875e-17!GO:0022618;protein-RNA complex assembly;4.00957573073436e-17!GO:0022402;cell cycle process;4.92624570480425e-17!GO:0000278;mitotic cell cycle;5.25447006812729e-17!GO:0016462;pyrophosphatase activity;8.9708675229711e-17!GO:0016874;ligase activity;1.08757106538579e-16!GO:0008134;transcription factor binding;1.12447038098058e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.29691662444747e-16!GO:0044432;endoplasmic reticulum part;1.95524568088109e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.9813339805426e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.81333197361681e-16!GO:0003954;NADH dehydrogenase activity;3.81333197361681e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.81333197361681e-16!GO:0005730;nucleolus;4.03753315126058e-16!GO:0017111;nucleoside-triphosphatase activity;5.26527082722875e-16!GO:0005761;mitochondrial ribosome;7.45479733381082e-16!GO:0000313;organellar ribosome;7.45479733381082e-16!GO:0006605;protein targeting;2.10065204604817e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.1966794109576e-15!GO:0044265;cellular macromolecule catabolic process;2.50789359700513e-15!GO:0006974;response to DNA damage stimulus;2.7801465409572e-15!GO:0005794;Golgi apparatus;2.99573292077828e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08959881930155e-15!GO:0043285;biopolymer catabolic process;3.82987006632984e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.95536377988173e-15!GO:0006512;ubiquitin cycle;5.55100261147921e-15!GO:0017076;purine nucleotide binding;1.24891307822556e-14!GO:0005694;chromosome;1.25983484978283e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.36602820729972e-14!GO:0008135;translation factor activity, nucleic acid binding;1.61096519137448e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.69325986787061e-14!GO:0042773;ATP synthesis coupled electron transport;1.69325986787061e-14!GO:0048193;Golgi vesicle transport;2.57102745942556e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.59869505169065e-14!GO:0045271;respiratory chain complex I;2.59869505169065e-14!GO:0005747;mitochondrial respiratory chain complex I;2.59869505169065e-14!GO:0019941;modification-dependent protein catabolic process;2.59869505169065e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.59869505169065e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.37160827273436e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.59558941866455e-14!GO:0032553;ribonucleotide binding;3.89999393105871e-14!GO:0032555;purine ribonucleotide binding;3.89999393105871e-14!GO:0044257;cellular protein catabolic process;4.0394991883828e-14!GO:0006732;coenzyme metabolic process;4.55963610052286e-14!GO:0044248;cellular catabolic process;4.55963610052286e-14!GO:0009057;macromolecule catabolic process;5.95152842069747e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.27368343621515e-14!GO:0051276;chromosome organization and biogenesis;1.72904378406249e-13!GO:0044427;chromosomal part;2.90313313924225e-13!GO:0030163;protein catabolic process;2.96827552550727e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.22672111072302e-13!GO:0000375;RNA splicing, via transesterification reactions;4.22672111072302e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.22672111072302e-13!GO:0005635;nuclear envelope;4.73654791247428e-13!GO:0051082;unfolded protein binding;5.79352526338523e-13!GO:0022403;cell cycle phase;7.94936794448186e-13!GO:0000087;M phase of mitotic cell cycle;1.18729044509302e-12!GO:0007067;mitosis;1.80853533478955e-12!GO:0016192;vesicle-mediated transport;2.50561733939222e-12!GO:0030554;adenyl nucleotide binding;3.16947373461347e-12!GO:0005524;ATP binding;3.8983066503786e-12!GO:0006281;DNA repair;5.06633156240491e-12!GO:0009055;electron carrier activity;5.29456519718612e-12!GO:0032559;adenyl ribonucleotide binding;7.7126143812252e-12!GO:0031965;nuclear membrane;8.44775360748666e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15936934663512e-11!GO:0005793;ER-Golgi intermediate compartment;1.23916048859159e-11!GO:0006913;nucleocytoplasmic transport;1.46399608956284e-11!GO:0042254;ribosome biogenesis and assembly;1.55711691205328e-11!GO:0003743;translation initiation factor activity;2.05504722358291e-11!GO:0051301;cell division;2.40893788021978e-11!GO:0009719;response to endogenous stimulus;3.31440267366802e-11!GO:0016604;nuclear body;3.37639474283689e-11!GO:0051169;nuclear transport;3.98570154529009e-11!GO:0006323;DNA packaging;4.94042137954859e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4393326919229e-11!GO:0006413;translational initiation;7.54142223489041e-11!GO:0006446;regulation of translational initiation;9.15868414360711e-11!GO:0043412;biopolymer modification;1.33687956769678e-10!GO:0005789;endoplasmic reticulum membrane;1.37447804849989e-10!GO:0003712;transcription cofactor activity;1.58112080718047e-10!GO:0009259;ribonucleotide metabolic process;1.62745943002342e-10!GO:0006163;purine nucleotide metabolic process;1.88963111840963e-10!GO:0044453;nuclear membrane part;1.97618464027432e-10!GO:0006260;DNA replication;2.52748541670869e-10!GO:0006461;protein complex assembly;2.71824723009507e-10!GO:0000279;M phase;4.13969233722026e-10!GO:0009150;purine ribonucleotide metabolic process;5.19784010510902e-10!GO:0016491;oxidoreductase activity;5.71406543928537e-10!GO:0017038;protein import;1.06626937194757e-09!GO:0065004;protein-DNA complex assembly;1.17454743716918e-09!GO:0008565;protein transporter activity;1.27916886669735e-09!GO:0006164;purine nucleotide biosynthetic process;1.33802282597949e-09!GO:0000074;regulation of progression through cell cycle;2.25662863591479e-09!GO:0009060;aerobic respiration;2.5143220353365e-09!GO:0006464;protein modification process;2.5931533979475e-09!GO:0016607;nuclear speck;2.61556532644487e-09!GO:0009260;ribonucleotide biosynthetic process;2.92003540219695e-09!GO:0051726;regulation of cell cycle;2.92003540219695e-09!GO:0006399;tRNA metabolic process;3.12318011509886e-09!GO:0045333;cellular respiration;3.19955548812156e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.61908902050204e-09!GO:0005788;endoplasmic reticulum lumen;4.47576105238087e-09!GO:0006333;chromatin assembly or disassembly;4.54658879367571e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.34223102933319e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.34223102933319e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.34223102933319e-09!GO:0012501;programmed cell death;7.02629394045856e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.62630187624159e-09!GO:0006366;transcription from RNA polymerase II promoter;8.45739688074409e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.75706912704845e-09!GO:0043038;amino acid activation;1.22244024108151e-08!GO:0006418;tRNA aminoacylation for protein translation;1.22244024108151e-08!GO:0043039;tRNA aminoacylation;1.22244024108151e-08!GO:0042623;ATPase activity, coupled;1.26280491023982e-08!GO:0006915;apoptosis;1.32315044427659e-08!GO:0009056;catabolic process;1.59488143626113e-08!GO:0000785;chromatin;1.74093592786344e-08!GO:0051188;cofactor biosynthetic process;1.76464969136406e-08!GO:0008639;small protein conjugating enzyme activity;1.8069445824257e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.00192352202811e-08!GO:0016887;ATPase activity;2.07082021463982e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.08263142945843e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.13634049018236e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.64203664907658e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.64203664907658e-08!GO:0009141;nucleoside triphosphate metabolic process;2.73397412307624e-08!GO:0015630;microtubule cytoskeleton;2.89123453337992e-08!GO:0004842;ubiquitin-protein ligase activity;3.12483987435713e-08!GO:0008219;cell death;3.4424493817658e-08!GO:0016265;death;3.4424493817658e-08!GO:0004386;helicase activity;4.09077283184045e-08!GO:0005643;nuclear pore;4.38072549810517e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.40354842167024e-08!GO:0030120;vesicle coat;4.60344499130214e-08!GO:0030662;coated vesicle membrane;4.60344499130214e-08!GO:0043687;post-translational protein modification;4.75073485399265e-08!GO:0003697;single-stranded DNA binding;6.67994933210149e-08!GO:0065002;intracellular protein transport across a membrane;7.48078847711915e-08!GO:0050794;regulation of cellular process;7.77175576846556e-08!GO:0006099;tricarboxylic acid cycle;8.48283042912541e-08!GO:0046356;acetyl-CoA catabolic process;8.48283042912541e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.71350344758718e-08!GO:0019787;small conjugating protein ligase activity;8.97054080373424e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.00679049937932e-07!GO:0006364;rRNA processing;1.35667111835985e-07!GO:0048523;negative regulation of cellular process;1.37859384389608e-07!GO:0015986;ATP synthesis coupled proton transport;1.47013291790855e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.47013291790855e-07!GO:0051187;cofactor catabolic process;1.49995512914377e-07!GO:0006334;nucleosome assembly;1.64376808514211e-07!GO:0007010;cytoskeleton organization and biogenesis;1.73324029289977e-07!GO:0048475;coated membrane;1.75665666390638e-07!GO:0030117;membrane coat;1.75665666390638e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.84659994255403e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.84659994255403e-07!GO:0050657;nucleic acid transport;1.87279346428544e-07!GO:0051236;establishment of RNA localization;1.87279346428544e-07!GO:0050658;RNA transport;1.87279346428544e-07!GO:0006084;acetyl-CoA metabolic process;1.88371820592024e-07!GO:0006403;RNA localization;2.01495326243853e-07!GO:0009117;nucleotide metabolic process;2.12529086267609e-07!GO:0009109;coenzyme catabolic process;2.21343394866453e-07!GO:0046034;ATP metabolic process;2.30366309090605e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.43132305063972e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.43132305063972e-07!GO:0008026;ATP-dependent helicase activity;2.65115253643963e-07!GO:0006091;generation of precursor metabolites and energy;2.99151871501181e-07!GO:0019829;cation-transporting ATPase activity;3.31991230880882e-07!GO:0031497;chromatin assembly;3.63252713587916e-07!GO:0016853;isomerase activity;3.66730871898228e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.70389246765659e-07!GO:0016072;rRNA metabolic process;3.71586463660602e-07!GO:0043566;structure-specific DNA binding;4.39010205033303e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.49121860724337e-07!GO:0051170;nuclear import;4.62322111482093e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.69393827410594e-07!GO:0016881;acid-amino acid ligase activity;5.99641096502574e-07!GO:0051246;regulation of protein metabolic process;6.15306855703186e-07!GO:0005768;endosome;7.28756857745412e-07!GO:0044431;Golgi apparatus part;7.87745768703697e-07!GO:0003924;GTPase activity;7.88051943058629e-07!GO:0030029;actin filament-based process;8.25666192378532e-07!GO:0006606;protein import into nucleus;8.26496032428465e-07!GO:0046930;pore complex;8.73289261462822e-07!GO:0007005;mitochondrion organization and biogenesis;9.51351842957618e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.51351842957618e-07!GO:0009108;coenzyme biosynthetic process;1.00389766717599e-06!GO:0016740;transferase activity;1.18344911762246e-06!GO:0005813;centrosome;1.20527932735288e-06!GO:0045259;proton-transporting ATP synthase complex;1.42328202160518e-06!GO:0031252;leading edge;1.45871817851026e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.80031222801426e-06!GO:0016859;cis-trans isomerase activity;1.82128870333233e-06!GO:0016568;chromatin modification;1.87915431205742e-06!GO:0006754;ATP biosynthetic process;2.04290894674441e-06!GO:0006753;nucleoside phosphate metabolic process;2.04290894674441e-06!GO:0005667;transcription factor complex;2.09942831274003e-06!GO:0005762;mitochondrial large ribosomal subunit;2.49760140303711e-06!GO:0000315;organellar large ribosomal subunit;2.49760140303711e-06!GO:0000245;spliceosome assembly;2.64218248064512e-06!GO:0008092;cytoskeletal protein binding;2.8817959938892e-06!GO:0016564;transcription repressor activity;3.276556107781e-06!GO:0016779;nucleotidyltransferase activity;3.43671052724898e-06!GO:0050789;regulation of biological process;3.74136400757372e-06!GO:0005815;microtubule organizing center;3.87721636786678e-06!GO:0032446;protein modification by small protein conjugation;4.09809757727762e-06!GO:0005798;Golgi-associated vesicle;4.28801490011656e-06!GO:0048519;negative regulation of biological process;4.32503878189356e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.43365871611434e-06!GO:0000151;ubiquitin ligase complex;5.11048489935666e-06!GO:0016567;protein ubiquitination;5.60637225017938e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.10030717652678e-06!GO:0051028;mRNA transport;6.12926910591196e-06!GO:0004298;threonine endopeptidase activity;6.55485841453446e-06!GO:0006752;group transfer coenzyme metabolic process;6.77841029588443e-06!GO:0031324;negative regulation of cellular metabolic process;7.15798638694008e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.5327395360127e-06!GO:0006613;cotranslational protein targeting to membrane;1.14012592740912e-05!GO:0003714;transcription corepressor activity;1.14012592740912e-05!GO:0031988;membrane-bound vesicle;1.14012592740912e-05!GO:0008654;phospholipid biosynthetic process;1.30083064386547e-05!GO:0045786;negative regulation of progression through cell cycle;1.30934108792875e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.46576649993762e-05!GO:0043623;cellular protein complex assembly;1.51391625009156e-05!GO:0044440;endosomal part;1.73561264392525e-05!GO:0010008;endosome membrane;1.73561264392525e-05!GO:0030133;transport vesicle;1.74680183704499e-05!GO:0051329;interphase of mitotic cell cycle;1.9241765296055e-05!GO:0031982;vesicle;2.00268886880051e-05!GO:0005819;spindle;2.06890798436519e-05!GO:0003713;transcription coactivator activity;2.2010345392622e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.37115000979692e-05!GO:0045454;cell redox homeostasis;2.4593935809583e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.03945922520795e-05!GO:0016126;sterol biosynthetic process;3.07662391928571e-05!GO:0000139;Golgi membrane;3.27462449119076e-05!GO:0031410;cytoplasmic vesicle;3.28165305482975e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.52197520016401e-05!GO:0042981;regulation of apoptosis;3.68968690862497e-05!GO:0051427;hormone receptor binding;3.81519412158592e-05!GO:0043067;regulation of programmed cell death;4.30016352454246e-05!GO:0006916;anti-apoptosis;4.30895350258564e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.37639216780844e-05!GO:0030867;rough endoplasmic reticulum membrane;4.49407968564538e-05!GO:0009892;negative regulation of metabolic process;4.76335520198975e-05!GO:0006793;phosphorus metabolic process;4.82648861817136e-05!GO:0006796;phosphate metabolic process;4.82648861817136e-05!GO:0003724;RNA helicase activity;5.34772136860672e-05!GO:0005770;late endosome;5.34772136860672e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.11145819894699e-05!GO:0043021;ribonucleoprotein binding;6.61278340553139e-05!GO:0043069;negative regulation of programmed cell death;6.7018254662771e-05!GO:0016563;transcription activator activity;6.72707592381041e-05!GO:0016481;negative regulation of transcription;6.86046175999454e-05!GO:0051325;interphase;6.88228682940659e-05!GO:0043066;negative regulation of apoptosis;7.88129191014147e-05!GO:0000314;organellar small ribosomal subunit;8.05740724358196e-05!GO:0005763;mitochondrial small ribosomal subunit;8.05740724358196e-05!GO:0035257;nuclear hormone receptor binding;8.11199288056262e-05!GO:0005791;rough endoplasmic reticulum;8.1208488365641e-05!GO:0008610;lipid biosynthetic process;8.12223061111903e-05!GO:0006261;DNA-dependent DNA replication;9.12237651657662e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.15714090277515e-05!GO:0019899;enzyme binding;0.000118482323784249!GO:0005525;GTP binding;0.000122312267756688!GO:0016310;phosphorylation;0.00012931804765508!GO:0005048;signal sequence binding;0.000145549852122487!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000152746786373667!GO:0031968;organelle outer membrane;0.000154159655063847!GO:0009165;nucleotide biosynthetic process;0.000186526345625376!GO:0005773;vacuole;0.000189393341750238!GO:0019867;outer membrane;0.000191707002135521!GO:0019222;regulation of metabolic process;0.000192782765475016!GO:0016787;hydrolase activity;0.000192872573858816!GO:0003899;DNA-directed RNA polymerase activity;0.000201444615616586!GO:0000775;chromosome, pericentric region;0.000204470078808406!GO:0050662;coenzyme binding;0.000212179423380761!GO:0005905;coated pit;0.000216547397117432!GO:0051789;response to protein stimulus;0.000220473950918244!GO:0006986;response to unfolded protein;0.000220473950918244!GO:0019843;rRNA binding;0.000239994271381425!GO:0005769;early endosome;0.000240742248033513!GO:0008361;regulation of cell size;0.000248933194352688!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000264002999750171!GO:0033116;ER-Golgi intermediate compartment membrane;0.000278943908167217!GO:0030663;COPI coated vesicle membrane;0.000280422260379986!GO:0030126;COPI vesicle coat;0.000280422260379986!GO:0007051;spindle organization and biogenesis;0.000298004567304714!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000306923285196549!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000315134914128366!GO:0016049;cell growth;0.000331378337621852!GO:0008250;oligosaccharyl transferase complex;0.00035648113360921!GO:0005885;Arp2/3 protein complex;0.000378399271146951!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000394062335030319!GO:0004576;oligosaccharyl transferase activity;0.000410459349732814!GO:0005741;mitochondrial outer membrane;0.000415339470122216!GO:0003729;mRNA binding;0.000427751146514699!GO:0046474;glycerophospholipid biosynthetic process;0.000427751146514699!GO:0006612;protein targeting to membrane;0.000444275365487326!GO:0006695;cholesterol biosynthetic process;0.000478133043467845!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000509134985751391!GO:0051287;NAD binding;0.000536112004202632!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055279990930829!GO:0000786;nucleosome;0.00057934962693673!GO:0032561;guanyl ribonucleotide binding;0.000603566127194609!GO:0019001;guanyl nucleotide binding;0.000603566127194609!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00060984709850471!GO:0001558;regulation of cell growth;0.0006293138863037!GO:0005657;replication fork;0.000641873974603907!GO:0043681;protein import into mitochondrion;0.000658159907772518!GO:0000323;lytic vacuole;0.000690312524706848!GO:0005764;lysosome;0.000690312524706848!GO:0051920;peroxiredoxin activity;0.000743333968029706!GO:0030137;COPI-coated vesicle;0.000762242801995548!GO:0051168;nuclear export;0.000843657462315207!GO:0008186;RNA-dependent ATPase activity;0.000846838271601429!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000912056697366191!GO:0016363;nuclear matrix;0.000912564531320707!GO:0015629;actin cytoskeleton;0.000912564531320707!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000932076092729937!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000932076092729937!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000932076092729937!GO:0000075;cell cycle checkpoint;0.0011311225315973!GO:0044262;cellular carbohydrate metabolic process;0.00114016391766798!GO:0006414;translational elongation;0.00114862732585582!GO:0003690;double-stranded DNA binding;0.00120741432725868!GO:0018196;peptidyl-asparagine modification;0.00125556003831284!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00125556003831284!GO:0019752;carboxylic acid metabolic process;0.00129295345606156!GO:0006082;organic acid metabolic process;0.00134252497763593!GO:0000059;protein import into nucleus, docking;0.00140905509435614!GO:0051252;regulation of RNA metabolic process;0.00154156469061456!GO:0006626;protein targeting to mitochondrion;0.0016373994829298!GO:0043488;regulation of mRNA stability;0.00165338301142516!GO:0043487;regulation of RNA stability;0.00165338301142516!GO:0006891;intra-Golgi vesicle-mediated transport;0.00174392575022841!GO:0030027;lamellipodium;0.00176332996749402!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00183066470591626!GO:0015002;heme-copper terminal oxidase activity;0.00183066470591626!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00183066470591626!GO:0004129;cytochrome-c oxidase activity;0.00183066470591626!GO:0042802;identical protein binding;0.00183959426163991!GO:0030041;actin filament polymerization;0.00193272926081563!GO:0030132;clathrin coat of coated pit;0.00196576870856984!GO:0016044;membrane organization and biogenesis;0.00205069649212395!GO:0051128;regulation of cellular component organization and biogenesis;0.00206917336192303!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00208323964367609!GO:0006402;mRNA catabolic process;0.00219068058142745!GO:0004004;ATP-dependent RNA helicase activity;0.00235996775399054!GO:0008094;DNA-dependent ATPase activity;0.00242932338985033!GO:0048500;signal recognition particle;0.00242986646760729!GO:0046467;membrane lipid biosynthetic process;0.00244772122325789!GO:0000776;kinetochore;0.00244772122325789!GO:0001726;ruffle;0.00245114350839488!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0026032674052903!GO:0016741;transferase activity, transferring one-carbon groups;0.00280092113798191!GO:0030134;ER to Golgi transport vesicle;0.00290539576504306!GO:0008168;methyltransferase activity;0.00292180360514663!GO:0030880;RNA polymerase complex;0.00292489198270642!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00294969390382319!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00294969390382319!GO:0006839;mitochondrial transport;0.00304606736122119!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00311187844698825!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031870634779667!GO:0008154;actin polymerization and/or depolymerization;0.00330494241351415!GO:0003779;actin binding;0.00333755010921504!GO:0030658;transport vesicle membrane;0.00334474183354351!GO:0046483;heterocycle metabolic process;0.00341959832716669!GO:0007050;cell cycle arrest;0.00346408215959946!GO:0048037;cofactor binding;0.00353836950138715!GO:0065007;biological regulation;0.00356102447487538!GO:0006979;response to oxidative stress;0.00356824790252655!GO:0035258;steroid hormone receptor binding;0.00367191704203693!GO:0006383;transcription from RNA polymerase III promoter;0.00372613820741998!GO:0005874;microtubule;0.00381102473342994!GO:0048471;perinuclear region of cytoplasm;0.00384887312720702!GO:0008180;signalosome;0.00384887312720702!GO:0051101;regulation of DNA binding;0.00385935934071426!GO:0046489;phosphoinositide biosynthetic process;0.0041939644403714!GO:0008139;nuclear localization sequence binding;0.00422524064827985!GO:0005637;nuclear inner membrane;0.00422524064827985!GO:0005684;U2-dependent spliceosome;0.00425879366093448!GO:0043284;biopolymer biosynthetic process;0.00437303737822101!GO:0006740;NADPH regeneration;0.00444244969813424!GO:0006098;pentose-phosphate shunt;0.00444244969813424!GO:0006352;transcription initiation;0.00462592823635297!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00475009987342304!GO:0031072;heat shock protein binding;0.00476638956853256!GO:0030127;COPII vesicle coat;0.00476638956853256!GO:0012507;ER to Golgi transport vesicle membrane;0.00476638956853256!GO:0008312;7S RNA binding;0.00481139571081742!GO:0030118;clathrin coat;0.00503857605411751!GO:0004177;aminopeptidase activity;0.0050423778375436!GO:0015631;tubulin binding;0.00509256442938018!GO:0006595;polyamine metabolic process;0.00540060137188771!GO:0006118;electron transport;0.00549021316409927!GO:0030176;integral to endoplasmic reticulum membrane;0.00557328292493593!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0056500342950193!GO:0045047;protein targeting to ER;0.0056500342950193!GO:0030521;androgen receptor signaling pathway;0.00592027267891149!GO:0016408;C-acyltransferase activity;0.00600099356794025!GO:0006302;double-strand break repair;0.0060134690781345!GO:0051539;4 iron, 4 sulfur cluster binding;0.00604528014454188!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00604528014454188!GO:0017166;vinculin binding;0.00611016603987296!GO:0003684;damaged DNA binding;0.00623521397006337!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00624823830657978!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00625819559692344!GO:0000428;DNA-directed RNA polymerase complex;0.00625819559692344!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00641514471770885!GO:0045892;negative regulation of transcription, DNA-dependent;0.00644393946813159!GO:0003682;chromatin binding;0.00660546023914543!GO:0003711;transcription elongation regulator activity;0.00662906615618384!GO:0048522;positive regulation of cellular process;0.00666984801681803!GO:0016197;endosome transport;0.00670299352552451!GO:0051540;metal cluster binding;0.00694822804006228!GO:0051536;iron-sulfur cluster binding;0.00694822804006228!GO:0009112;nucleobase metabolic process;0.00697206157136334!GO:0007243;protein kinase cascade;0.00733964178632175!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00739736518843212!GO:0003678;DNA helicase activity;0.0076574393642081!GO:0031625;ubiquitin protein ligase binding;0.00833695132233859!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00846664773829873!GO:0006650;glycerophospholipid metabolic process;0.00894448183361744!GO:0009081;branched chain family amino acid metabolic process;0.0089992478870167!GO:0022890;inorganic cation transmembrane transporter activity;0.00901315260419784!GO:0003746;translation elongation factor activity;0.00909087025363859!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00918294541377486!GO:0051052;regulation of DNA metabolic process;0.00918777213414745!GO:0006310;DNA recombination;0.00935956543670529!GO:0006733;oxidoreduction coenzyme metabolic process;0.00942886971513622!GO:0007264;small GTPase mediated signal transduction;0.00962066358507523!GO:0003756;protein disulfide isomerase activity;0.00967753445023171!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00967753445023171!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.009681739348199!GO:0033043;regulation of organelle organization and biogenesis;0.009681739348199!GO:0009303;rRNA transcription;0.00969924384489986!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00975334409929108!GO:0051087;chaperone binding;0.00975334409929108!GO:0030660;Golgi-associated vesicle membrane;0.00991907481600789!GO:0005856;cytoskeleton;0.0102725023264566!GO:0007052;mitotic spindle organization and biogenesis;0.0103178866594973!GO:0005869;dynactin complex;0.0103178866594973!GO:0006401;RNA catabolic process;0.0109589240046055!GO:0006289;nucleotide-excision repair;0.0112066697876859!GO:0016584;nucleosome positioning;0.0112921848894952!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0113073019846838!GO:0043022;ribosome binding;0.0113579215245978!GO:0031323;regulation of cellular metabolic process;0.011381261145335!GO:0004674;protein serine/threonine kinase activity;0.0113965091261021!GO:0048487;beta-tubulin binding;0.0115259820161603!GO:0006509;membrane protein ectodomain proteolysis;0.0117242204417126!GO:0033619;membrane protein proteolysis;0.0117242204417126!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0117320265254879!GO:0040008;regulation of growth;0.0117819468837086!GO:0016407;acetyltransferase activity;0.0122298555702582!GO:0031902;late endosome membrane;0.0122574026089467!GO:0006892;post-Golgi vesicle-mediated transport;0.0129668875267873!GO:0001725;stress fiber;0.0129668875267873!GO:0032432;actin filament bundle;0.0129668875267873!GO:0008033;tRNA processing;0.0129701467821058!GO:0006520;amino acid metabolic process;0.012982880921706!GO:0006338;chromatin remodeling;0.0130225932124333!GO:0006778;porphyrin metabolic process;0.0134293729593797!GO:0033013;tetrapyrrole metabolic process;0.0134293729593797!GO:0007093;mitotic cell cycle checkpoint;0.014076367617268!GO:0005832;chaperonin-containing T-complex;0.0141962762576295!GO:0030518;steroid hormone receptor signaling pathway;0.0146205765557903!GO:0006739;NADP metabolic process;0.0150819395095688!GO:0005862;muscle thin filament tropomyosin;0.0151055039263605!GO:0007088;regulation of mitosis;0.015224620363262!GO:0016860;intramolecular oxidoreductase activity;0.0152418535305916!GO:0032508;DNA duplex unwinding;0.0152563513109994!GO:0032392;DNA geometric change;0.0152563513109994!GO:0006350;transcription;0.0152579058847599!GO:0031124;mRNA 3'-end processing;0.0159058781142623!GO:0006268;DNA unwinding during replication;0.0162536826558095!GO:0006405;RNA export from nucleus;0.0164481290778413!GO:0000792;heterochromatin;0.016603569375968!GO:0005876;spindle microtubule;0.0170948546424702!GO:0006769;nicotinamide metabolic process;0.0171640154077275!GO:0005096;GTPase activator activity;0.0172948536654896!GO:0008047;enzyme activator activity;0.017521544506133!GO:0000910;cytokinesis;0.017521544506133!GO:0008629;induction of apoptosis by intracellular signals;0.0175322713409183!GO:0045045;secretory pathway;0.0175449378751577!GO:0006950;response to stress;0.0176106321211157!GO:0004527;exonuclease activity;0.0178366514080097!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0178522875592689!GO:0016251;general RNA polymerase II transcription factor activity;0.0179470456089051!GO:0032984;macromolecular complex disassembly;0.0181360386758108!GO:0005100;Rho GTPase activator activity;0.0187345986319366!GO:0045893;positive regulation of transcription, DNA-dependent;0.0187931851056861!GO:0005865;striated muscle thin filament;0.0188006256972784!GO:0000209;protein polyubiquitination;0.0188471309084903!GO:0015992;proton transport;0.0188751407909862!GO:0000049;tRNA binding;0.0189185651315894!GO:0051098;regulation of binding;0.0190940833611385!GO:0030031;cell projection biogenesis;0.0191351935224453!GO:0000096;sulfur amino acid metabolic process;0.0194908978419981!GO:0006607;NLS-bearing substrate import into nucleus;0.0195157138692076!GO:0000339;RNA cap binding;0.019676420019345!GO:0065009;regulation of a molecular function;0.0198088372620764!GO:0031901;early endosome membrane;0.0198644201997265!GO:0006007;glucose catabolic process;0.0198673059103016!GO:0006818;hydrogen transport;0.0204301767904249!GO:0006220;pyrimidine nucleotide metabolic process;0.0204458320912674!GO:0000082;G1/S transition of mitotic cell cycle;0.0205811978710362!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0207508950293946!GO:0050681;androgen receptor binding;0.0210279730466416!GO:0016125;sterol metabolic process;0.0211057353762563!GO:0044452;nucleolar part;0.0211796251929647!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.021592675994814!GO:0008022;protein C-terminus binding;0.0216416650793263!GO:0040029;regulation of gene expression, epigenetic;0.0217690503947433!GO:0005669;transcription factor TFIID complex;0.0217690503947433!GO:0016272;prefoldin complex;0.0221642337932808!GO:0009116;nucleoside metabolic process;0.0223684807127443!GO:0031529;ruffle organization and biogenesis;0.0223684807127443!GO:0031418;L-ascorbic acid binding;0.0231877924497341!GO:0045941;positive regulation of transcription;0.0243585329141849!GO:0008632;apoptotic program;0.0250661171210576!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0251589177963287!GO:0030125;clathrin vesicle coat;0.0253495219172012!GO:0030665;clathrin coated vesicle membrane;0.0253495219172012!GO:0006376;mRNA splice site selection;0.0255937746694719!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255937746694719!GO:0019798;procollagen-proline dioxygenase activity;0.0262583128963066!GO:0030145;manganese ion binding;0.0265439225594032!GO:0007040;lysosome organization and biogenesis;0.0266512282838817!GO:0035035;histone acetyltransferase binding;0.0270151208743919!GO:0007059;chromosome segregation;0.0270382200363305!GO:0030119;AP-type membrane coat adaptor complex;0.0271021947819013!GO:0032507;maintenance of cellular protein localization;0.0271191900925298!GO:0022415;viral reproductive process;0.0273361394877383!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0275552455371388!GO:0008286;insulin receptor signaling pathway;0.0282783628869878!GO:0043241;protein complex disassembly;0.0284478859256498!GO:0007021;tubulin folding;0.0284572917404257!GO:0006144;purine base metabolic process;0.02856833152197!GO:0006779;porphyrin biosynthetic process;0.0289739616480583!GO:0033014;tetrapyrrole biosynthetic process;0.0289739616480583!GO:0008299;isoprenoid biosynthetic process;0.0295206238415828!GO:0004364;glutathione transferase activity;0.0295514169605444!GO:0033559;unsaturated fatty acid metabolic process;0.0297303842914614!GO:0006636;unsaturated fatty acid biosynthetic process;0.0297303842914614!GO:0030833;regulation of actin filament polymerization;0.0297315272187321!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0300858794005845!GO:0048468;cell development;0.030203602148935!GO:0005758;mitochondrial intermembrane space;0.0310915799466947!GO:0031970;organelle envelope lumen;0.0310921694228196!GO:0031371;ubiquitin conjugating enzyme complex;0.0313057592981041!GO:0006506;GPI anchor biosynthetic process;0.0314238416618352!GO:0051235;maintenance of localization;0.032021713026655!GO:0045792;negative regulation of cell size;0.032021713026655!GO:0009124;nucleoside monophosphate biosynthetic process;0.0320384537128656!GO:0009123;nucleoside monophosphate metabolic process;0.0320384537128656!GO:0005586;collagen type III;0.032120460039797!GO:0031543;peptidyl-proline dioxygenase activity;0.032120460039797!GO:0006611;protein export from nucleus;0.0322396832280354!GO:0000922;spindle pole;0.0322509250530756!GO:0007346;regulation of progression through mitotic cell cycle;0.0324018012599998!GO:0015036;disulfide oxidoreductase activity;0.0325633418822016!GO:0007017;microtubule-based process;0.0326086527566616!GO:0001872;zymosan binding;0.0329575341161486!GO:0001878;response to yeast;0.0329575341161486!GO:0019206;nucleoside kinase activity;0.033413119797332!GO:0032981;mitochondrial respiratory chain complex I assembly;0.033413119797332!GO:0010257;NADH dehydrogenase complex assembly;0.033413119797332!GO:0033108;mitochondrial respiratory chain complex assembly;0.033413119797332!GO:0031123;RNA 3'-end processing;0.033413119797332!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0337772376332797!GO:0015399;primary active transmembrane transporter activity;0.0337772376332797!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339284631866223!GO:0030032;lamellipodium biogenesis;0.0339284631866223!GO:0030659;cytoplasmic vesicle membrane;0.0342352245168808!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0345151500239033!GO:0006505;GPI anchor metabolic process;0.0345961153397011!GO:0030384;phosphoinositide metabolic process;0.035360519890561!GO:0004300;enoyl-CoA hydratase activity;0.0356704423853808!GO:0006497;protein amino acid lipidation;0.0361845154588716!GO:0008097;5S rRNA binding;0.0363097971038418!GO:0050811;GABA receptor binding;0.0366558503845383!GO:0043624;cellular protein complex disassembly;0.0366558503845383!GO:0050178;phenylpyruvate tautomerase activity;0.0372155025718374!GO:0042168;heme metabolic process;0.0374592460527748!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0374592460527748!GO:0006720;isoprenoid metabolic process;0.0374669496280726!GO:0030911;TPR domain binding;0.0376880165773631!GO:0006284;base-excision repair;0.0378699011935128!GO:0007265;Ras protein signal transduction;0.0381658835206446!GO:0030308;negative regulation of cell growth;0.0383092567842032!GO:0017134;fibroblast growth factor binding;0.0385886579710313!GO:0004448;isocitrate dehydrogenase activity;0.0386458149148916!GO:0031272;regulation of pseudopodium formation;0.0387830756758477!GO:0031269;pseudopodium formation;0.0387830756758477!GO:0031344;regulation of cell projection organization and biogenesis;0.0387830756758477!GO:0031268;pseudopodium organization and biogenesis;0.0387830756758477!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0387830756758477!GO:0031274;positive regulation of pseudopodium formation;0.0387830756758477!GO:0006275;regulation of DNA replication;0.0389012837665219!GO:0045185;maintenance of protein localization;0.038915416329628!GO:0042158;lipoprotein biosynthetic process;0.0391670103833924!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0395136027306513!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0395136027306513!GO:0046822;regulation of nucleocytoplasmic transport;0.0396596642316832!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0396865181005484!GO:0042770;DNA damage response, signal transduction;0.0402332489398519!GO:0016453;C-acetyltransferase activity;0.0404664580498352!GO:0007569;cell aging;0.0404700892857083!GO:0005784;translocon complex;0.0405947214478436!GO:0006767;water-soluble vitamin metabolic process;0.0415814190982054!GO:0000228;nuclear chromosome;0.04208644209691!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0431855677406391!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0431855677406391!GO:0010468;regulation of gene expression;0.0436278760571496!GO:0005801;cis-Golgi network;0.0437090462498374!GO:0030131;clathrin adaptor complex;0.0458311473173004!GO:0003988;acetyl-CoA C-acyltransferase activity;0.046372292873399!GO:0030496;midbody;0.0463767122549356!GO:0019362;pyridine nucleotide metabolic process;0.0466798985677228!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0467013452642975!GO:0044438;microbody part;0.0467013452642975!GO:0044439;peroxisomal part;0.0467013452642975!GO:0006541;glutamine metabolic process;0.0469410284546569!GO:0031406;carboxylic acid binding;0.0470513438414081!GO:0030522;intracellular receptor-mediated signaling pathway;0.0472700374839094!GO:0005099;Ras GTPase activator activity;0.0483729581656895!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0485420014243051!GO:0000084;S phase of mitotic cell cycle;0.0486849742312272!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0488847419126212!GO:0004563;beta-N-acetylhexosaminidase activity;0.049098004586052!GO:0043414;biopolymer methylation;0.049098004586052!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0492962065890253!GO:0000178;exosome (RNase complex);0.0492962065890253!GO:0046128;purine ribonucleoside metabolic process;0.0497806510548979!GO:0042278;purine nucleoside metabolic process;0.0497806510548979!GO:0003923;GPI-anchor transamidase activity;0.0497806510548979!GO:0016255;attachment of GPI anchor to protein;0.0497806510548979!GO:0042765;GPI-anchor transamidase complex;0.0497806510548979!GO:0047485;protein N-terminus binding;0.0498037265723803!GO:0006378;mRNA polyadenylation;0.0499016989125527!GO:0006897;endocytosis;0.0499016989125527!GO:0010324;membrane invagination;0.0499016989125527
|sample_id=11321
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle
|top_motifs=RXR{A,B,G}:1.63567627522;TFAP4:1.32251410043;ALX4:1.30106497604;UFEwm:1.24276312641;EVI1:1.22051599898;AIRE:1.2024119148;EN1,2:1.19080668748;ZNF238:1.15004538857;GFI1B:1.12237308607;NR3C1:1.1060293912;YY1:1.0501883064;TAL1_TCF{3,4,12}:1.04194643477;RXRA_VDR{dimer}:1.00678822216;NKX2-2,8:1.00419766616;NKX3-1:0.996300826384;GLI1..3:0.970496492428;POU3F1..4:0.960441738304;PAX4:0.960160397558;GZF1:0.953757544101;NANOG{mouse}:0.94574067209;KLF4:0.942612180793;GFI1:0.874640480147;ATF6:0.832890615544;IKZF1:0.826935653829;NKX2-1,4:0.795772538432;MZF1:0.769554960359;MYBL2:0.767640392342;TOPORS:0.764546531333;EBF1:0.764427917039;ESR1:0.739070218969;CDX1,2,4:0.738435327713;TEAD1:0.737961537358;HOX{A5,B5}:0.735258965889;SRF:0.687132019173;SOX17:0.661963835878;CDC5L:0.658030066516;TFAP2{A,C}:0.629722799251;STAT5{A,B}:0.612027885907;FOXD3:0.594127970115;GTF2A1,2:0.589313567815;PATZ1:0.571868022923;ZIC1..3:0.564686889211;SPZ1:0.556573146745;PAX5:0.54638118889;FOXP1:0.54584361402;TFCP2:0.535618475023;GTF2I:0.525448396878;TLX1..3_NFIC{dimer}:0.506435608203;AR:0.485767095954;XBP1:0.461521736338;ZNF143:0.39869475346;ZBTB16:0.398109402896;PAX1,9:0.386409553511;STAT1,3:0.379637305531;GCM1,2:0.344835912389;HES1:0.34425108929;EGR1..3:0.337214391421;NFY{A,B,C}:0.319811370586;ZNF423:0.319149572571;POU1F1:0.314622076626;E2F1..5:0.287360621102;ZBTB6:0.274831222238;HIC1:0.271930690896;PITX1..3:0.2665624698;NKX2-3_NKX2-5:0.25940235934;NRF1:0.259140783027;SP1:0.256831557407;NKX6-1,2:0.252948372718;NFIX:0.252829709043;TBX4,5:0.248903166245;MYFfamily:0.219632609483;PDX1:0.218892385363;NR6A1:0.212574964413;HOX{A4,D4}:0.211724718601;NHLH1,2:0.210836742594;MEF2{A,B,C,D}:0.206148424139;T:0.200023880795;ONECUT1,2:0.18533057798;MAZ:0.18265275491;LHX3,4:0.176782299548;NFATC1..3:0.172985518054;FOXP3:0.169845494937;SOX5:0.156676334363;PRDM1:0.150563596762;XCPE1{core}:0.150556140811;ZNF148:0.138977412672;TEF:0.127644859589;ELK1,4_GABP{A,B1}:0.125584450946;NR1H4:0.108345050407;TP53:0.104663050694;STAT2,4,6:0.102553123686;HNF4A_NR2F1,2:0.0929389744543;TBP:0.0926999834787;GATA4:0.0737807603549;MTF1:0.057769034821;RREB1:0.0522637640908;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0453174490581;IKZF2:0.0375972875025;DBP:0.0353931248944;NR5A1,2:0.000939311357008;TFDP1:-0.00851487291917;HIF1A:-0.0114370565882;ZNF384:-0.0269287321787;FOXM1:-0.0330222038173;MAFB:-0.0346617331443;FOXO1,3,4:-0.0489492135915;MTE{core}:-0.0563586347028;HNF1A:-0.0582803366022;MED-1{core}:-0.0749874082158;ESRRA:-0.0758498238944;ZFP161:-0.0817606401755;PAX8:-0.0828651659979;DMAP1_NCOR{1,2}_SMARC:-0.0914236895561;SMAD1..7,9:-0.0942448137022;POU6F1:-0.0943041106071;PPARG:-0.096284524379;RFX1:-0.0973426846448;BACH2:-0.0992419897409;ALX1:-0.102749731893;NKX3-2:-0.129886972975;TFAP2B:-0.136441062871;PBX1:-0.150417536263;NFE2L2:-0.161153629442;MYB:-0.177092982772;NFE2L1:-0.187579074659;HLF:-0.192251240553;AHR_ARNT_ARNT2:-0.211363149367;BPTF:-0.22301494087;HSF1,2:-0.268966837986;CREB1:-0.280112009373;FOS_FOS{B,L1}_JUN{B,D}:-0.281753041538;POU2F1..3:-0.283278314036;FOXL1:-0.309052886285;TGIF1:-0.31504104567;PRRX1,2:-0.318518698089;PAX3,7:-0.319591019403;FOSL2:-0.324808597797;HMGA1,2:-0.325973928983;RFX2..5_RFXANK_RFXAP:-0.32638720187;REST:-0.328800062437;CEBPA,B_DDIT3:-0.337420023033;TLX2:-0.354957861542;BREu{core}:-0.362238370863;LMO2:-0.369881577725;RBPJ:-0.37330317269;RUNX1..3:-0.388674306331;NFKB1_REL_RELA:-0.391707193069;IRF1,2:-0.414409899331;NFE2:-0.435757946884;ARID5B:-0.440142022408;HAND1,2:-0.443685506172;FOXA2:-0.446562225923;CUX2:-0.455595972229;HMX1:-0.46875102401;JUN:-0.485579066335;LEF1_TCF7_TCF7L1,2:-0.492532365628;IRF7:-0.527812293612;OCT4_SOX2{dimer}:-0.531024670387;ATF4:-0.548552091127;ELF1,2,4:-0.581192824316;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582314725333;SPI1:-0.591084865636;POU5F1:-0.595808562426;PAX6:-0.602360705078;FOX{D1,D2}:-0.627172569352;ETS1,2:-0.637945218387;SOX{8,9,10}:-0.63909087794;RORA:-0.653145171482;ADNP_IRX_SIX_ZHX:-0.656539654965;NANOG:-0.657903769202;SREBF1,2:-0.658801367699;EP300:-0.663569380783;bHLH_family:-0.689445384128;SPIB:-0.69958071851;NFIL3:-0.702345778868;SOX2:-0.716924753913;HBP1_HMGB_SSRP1_UBTF:-0.773248126231;ATF5_CREB3:-0.789219267725;HOX{A6,A7,B6,B7}:-0.794359363733;FOX{F1,F2,J1}:-0.81433222308;SNAI1..3:-0.8334393329;PAX2:-0.870368526875;FOXN1:-0.870606439361;GATA6:-0.910917288519;CRX:-0.934979334554;HOXA9_MEIS1:-0.938844179458;FOXQ1:-0.966645762427;VSX1,2:-0.984143731881;MYOD1:-1.02672106111;ZEB1:-1.19102817848;ATF2:-1.22987242061;FOX{I1,J2}:-1.37666305646
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11321-117D7;search_select_hide=table117:FF:11321-117D7
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Skeletal Muscle Satellite Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11964
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexunknown
agefetal
cell typesatellite cell, skeletal muscle
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number514
catalog numberSC3515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005751
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11964 CAGE DRX008459 DRR009331
Accession ID Hg19

Library idBAMCTSS
CNhs11964 DRZ000756 DRZ002141
Accession ID Hg38

Library idBAMCTSS
CNhs11964 DRZ012106 DRZ013491
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005751
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GAGTGG sRNA-Seq DRX037068 DRR041434
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GAGTGG DRZ007076


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0236
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.235
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.114
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.111
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00467
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0623
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00773
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.148
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.637
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0547
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.237
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.111
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0159
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.194
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.111
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.237
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.111
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.304
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.501
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.54
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.272
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0588
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.521
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.901
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11964

Jaspar motifP-value
MA0002.20.00155
MA0003.10.602
MA0004.10.167
MA0006.10.306
MA0007.10.0954
MA0009.10.147
MA0014.10.38
MA0017.10.26
MA0018.20.018
MA0019.10.497
MA0024.10.1
MA0025.11.277e-4
MA0027.10.83
MA0028.10.559
MA0029.10.77
MA0030.10.0291
MA0031.10.232
MA0035.20.00386
MA0038.10.419
MA0039.20.234
MA0040.10.262
MA0041.10.191
MA0042.10.348
MA0043.10.0554
MA0046.10.0362
MA0047.20.101
MA0048.10.00574
MA0050.10.00236
MA0051.13.69541e-4
MA0052.10.721
MA0055.10.214
MA0057.10.51
MA0058.10.062
MA0059.10.255
MA0060.10.542
MA0061.11.70576e-4
MA0062.21.17e-4
MA0065.20.237
MA0066.10.421
MA0067.15.45128e-4
MA0068.10.173
MA0069.10.0761
MA0070.10.882
MA0071.10.963
MA0072.10.173
MA0073.10.484
MA0074.10.116
MA0076.10.943
MA0077.10.52
MA0078.10.577
MA0079.20.774
MA0080.22.89775e-12
MA0081.10.0056
MA0083.10.543
MA0084.10.0151
MA0087.10.903
MA0088.10.0248
MA0090.10.0284
MA0091.10.14
MA0092.10.289
MA0093.10.166
MA0099.22.7401e-11
MA0100.10.537
MA0101.17.72942e-4
MA0102.20.218
MA0103.13.1222e-4
MA0104.20.14
MA0105.10.0881
MA0106.10.415
MA0107.12.10446e-5
MA0108.20.669
MA0111.10.977
MA0112.20.667
MA0113.10.142
MA0114.10.573
MA0115.10.402
MA0116.10.419
MA0117.10.153
MA0119.10.399
MA0122.10.264
MA0124.10.751
MA0125.10.75
MA0131.10.526
MA0135.10.0894
MA0136.19.21855e-15
MA0137.20.889
MA0138.20.645
MA0139.10.0602
MA0140.10.00657
MA0141.10.888
MA0142.10.114
MA0143.10.811
MA0144.10.69
MA0145.10.82
MA0146.10.00229
MA0147.10.194
MA0148.10.043
MA0149.10.292
MA0150.14.0787e-6
MA0152.10.106
MA0153.10.567
MA0154.10.0459
MA0155.10.748
MA0156.18.54489e-13
MA0157.10.195
MA0159.10.154
MA0160.10.0174
MA0162.10.135
MA0163.10.0219
MA0164.10.98
MA0258.10.639
MA0259.10.465



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11964

Novel motifP-value
10.713
100.526
1000.664
1010.654
1020.411
1030.598
1040.883
1050.0522
1060.00525
1070.948
1080.896
1090.383
110.842
1100.096
1110.55
1120.116
1130.136
1140.33
1150.385
1160.211
1170.347
1180.665
1190.487
120.306
1200.252
1210.524
1226.62767e-4
1230.0148
1240.0398
1250.68
1260.748
1270.0663
1280.966
1290.078
130.88
1300.448
1310.806
1320.311
1330.955
1340.464
1350.054
1360.179
1370.0215
1380.0492
1390.218
140.363
1400.219
1410.503
1420.819
1430.0532
1440.273
1450.996
1460.736
1470.285
1480.154
1490.678
150.109
1500.569
1510.867
1520.87
1530.901
1540.818
1550.1
1560.0236
1570.31
1580.0114
1590.462
160.419
1600.788
1610.774
1620.0452
1630.936
1640.256
1650.642
1660.0874
1670.0976
1680.175
1690.312
170.323
180.611
190.0281
20.756
200.939
210.0733
220.631
230.169
240.185
250.171
260.383
270.644
280.196
290.668
31
300.81
310.805
321.47766e-9
330.993
340.845
350.223
360.038
370.473
380.405
390.474
40.216
400.0202
410.00107
420.55
430.439
440.453
450.227
460.825
470.931
480.972
490.18
50.134
500.583
510.945
520.587
530.241
540.792
550.635
560.837
570.57
580.0962
590.853
60.919
600.0688
610.788
620.0983
630.777
640.602
650.563
660.673
670.487
680.19
690.675
70.18
700.303
710.944
720.441
730.344
740.243
750.819
760.458
770.949
780.302
790.00944
80.821
800.0147
810.577
820.729
830.0476
840.801
850.0961
860.624
870.336
880.463
890.571
90.987
900.469
910.566
920.649
930.975
940.315
950.852
960.259
970.983
980.2
991.92586e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11964


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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