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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005540
|accession_numbers=CAGE;DRX008107;DRR008979;DRZ000404;DRZ001789
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005540
|accession_numbers=CAGE;DRX008107;DRR008979;DRZ000404;DRZ001789;DRZ011754;DRZ013139
|accession_numbers_RNASeq=sRNA-Seq;DRX036990;DRR041356;DRZ006998
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.ctss.bed.gz
|id=FF:11533-120A3
|id=FF:11533-120A3
|is_a=EFO:0002091;;FF:0000009
|is_a=EFO:0002091;;FF:0000009
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|library_id=CNhs11341
|library_id=CNhs11341
|library_id_phase_based=2:CNhs11341
|library_id_phase_based=2:CNhs11341
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11533
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TTAGGC.11533
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11533
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TTAGGC.11533
|name=Amniotic Epithelial Cells, donor1
|name=Amniotic Epithelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 81:
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|sample_category=primary cells
Line 91: Line 105:
|top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813
|top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11533-120A3;search_select_hide=table117:FF:11533-120A3
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Amniotic Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11341
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeamniotic epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005540
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11341 CAGE DRX008107 DRR008979
Accession ID Hg19

Library idBAMCTSS
CNhs11341 DRZ000404 DRZ001789
Accession ID Hg38

Library idBAMCTSS
CNhs11341 DRZ011754 DRZ013139
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005540
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.TTAGGC sRNA-Seq DRX036990 DRR041356
Accession ID Hg19

Library idBAMCTSS
SRhi10002.TTAGGC DRZ006998


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.139
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.472
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.988
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0278
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.262
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.00937
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0411
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0858
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0542
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.503
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.06
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.348
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.273
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.459
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0477
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.246
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.624
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.273
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.157
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0.0858
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.472
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11341

Jaspar motifP-value
MA0002.20.244
MA0003.10.455
MA0004.10.494
MA0006.10.0458
MA0007.10.0118
MA0009.10.62
MA0014.10.453
MA0017.10.922
MA0018.20.0374
MA0019.10.0546
MA0024.10.454
MA0025.10.052
MA0027.10.795
MA0028.10.402
MA0029.10.0483
MA0030.10.0277
MA0031.10.0261
MA0035.20.267
MA0038.14.06491e-4
MA0039.20.0263
MA0040.10.952
MA0041.10.752
MA0042.10.314
MA0043.10.00297
MA0046.10.674
MA0047.20.308
MA0048.10.501
MA0050.11.00585e-7
MA0051.13.99492e-7
MA0052.10.509
MA0055.10.00508
MA0057.10.456
MA0058.10.113
MA0059.10.419
MA0060.11.32285e-5
MA0061.10.163
MA0062.20.0156
MA0065.20.286
MA0066.10.405
MA0067.10.00135
MA0068.10.21
MA0069.10.724
MA0070.10.0262
MA0071.10.935
MA0072.10.949
MA0073.10.311
MA0074.10.954
MA0076.10.0315
MA0077.10.727
MA0078.10.926
MA0079.20.4
MA0080.21.77969e-8
MA0081.10.00515
MA0083.10.19
MA0084.10.321
MA0087.10.423
MA0088.10.801
MA0090.18.80258e-6
MA0091.10.969
MA0092.10.434
MA0093.10.364
MA0099.27.04264e-5
MA0100.10.61
MA0101.10.0715
MA0102.21.34184e-4
MA0103.10.00166
MA0104.20.136
MA0105.10.581
MA0106.10.146
MA0107.10.0143
MA0108.20.343
MA0111.10.711
MA0112.20.206
MA0113.10.00863
MA0114.10.397
MA0115.10.752
MA0116.10.945
MA0117.10.36
MA0119.10.456
MA0122.10.441
MA0124.10.023
MA0125.10.00757
MA0131.10.712
MA0135.10.465
MA0136.11.0197e-7
MA0137.20.00755
MA0138.20.657
MA0139.10.641
MA0140.10.426
MA0141.10.787
MA0142.10.491
MA0143.10.195
MA0144.10.921
MA0145.10.159
MA0146.10.0559
MA0147.10.337
MA0148.10.582
MA0149.10.691
MA0150.10.323
MA0152.10.443
MA0153.10.435
MA0154.10.492
MA0155.10.425
MA0156.12.82615e-5
MA0157.10.0156
MA0159.10.736
MA0160.10.957
MA0162.10.0525
MA0163.10.358
MA0164.10.14
MA0258.10.936
MA0259.10.239



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11341

Novel motifP-value
10.366
100.584
1000.806
1010.506
1020.996
1030.17
1040.881
1050.0895
1060.0472
1070.051
1080.379
1090.0497
110.633
1100.0958
1110.827
1120.723
1139.44878e-5
1140.875
1150.361
1160.883
1170.31
1180.257
1190.413
120.711
1200.346
1210.16
1220.227
1230.169
1240.182
1250.308
1260.149
1270.561
1280.672
1290.172
130.277
1300.604
1310.0225
1320.411
1330.486
1340.0914
1350.533
1360.118
1370.12
1380.275
1390.153
140.985
1400.631
1410.6
1420.558
1430.734
1440.944
1450.681
1460.0466
1470.18
1480.121
1490.129
150.974
1500.141
1510.326
1520.0636
1530.136
1540.444
1550.2
1560.245
1570.62
1580.413
1590.451
160.193
1600.0701
1610.213
1620.197
1630.475
1640.949
1650.808
1660.15
1670.221
1680.533
1690.0599
170.144
180.36
190.522
20.0802
200.892
210.361
220.142
230.134
240.844
250.736
260.412
270.463
280.853
290.766
30.989
300.107
310.819
320.13
330.113
340.515
350.0391
360.183
370.963
380.725
390.156
40.513
400.0461
410.776
420.901
430.309
440.921
450.102
460.777
470.736
480.183
490.289
50.996
500.363
510.399
520.259
530.652
540.563
550.224
560.339
570.502
580.653
590.174
60.759
600.541
610.437
620.802
630.492
640.225
650.438
660.115
670.597
680.897
690.00108
70.3
700.792
710.468
720.705
730.0762
740.13
750.503
760.153
770.0319
780.417
790.553
80.72
800.61
810.672
820.547
830.985
840.519
850.586
860.28
870.941
880.227
890.185
90.391
900.354
910.266
920.537
930.57
940.668
950.554
960.577
970.269
980.965
990.0202



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11341


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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