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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005782
|DRA_sample_Accession=CAGE@SAMD00005782
|accession_numbers=CAGE;DRX008396;DRR009268;DRZ000693;DRZ002078
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005782
|accession_numbers=CAGE;DRX008396;DRR009268;DRZ000693;DRZ002078;DRZ012043;DRZ013428
|accession_numbers_RNASeq=sRNA-Seq;DRX037003;DRR041369;DRZ007011
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11491
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CCGTCC.11491
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CCGTCC.11491
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11491
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CCGTCC.11491
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CCGTCC.11491
|name=Pericytes, donor1
|name=Pericytes, donor1
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 77: Line 81:
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|sample_category=primary cells
Line 100: Line 105:
|top_motifs=ZNF423:2.91828645731;EBF1:2.90190177844;GTF2A1,2:2.56398374841;ESR1:2.207699476;RXRA_VDR{dimer}:2.19513710948;ZIC1..3:1.96549922069;TAL1_TCF{3,4,12}:1.91558694578;ESRRA:1.86358450693;RXR{A,B,G}:1.83388711769;GZF1:1.705774058;TFAP4:1.70436747151;ZNF238:1.62499515314;TFCP2:1.58491370814;SP1:1.57242670777;TFAP2{A,C}:1.54827286875;RREB1:1.50138674443;PAX1,9:1.45453117524;HES1:1.39605002711;TLX1..3_NFIC{dimer}:1.37706946201;PATZ1:1.34414817119;bHLH_family:1.33710280448;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.27086941209;XCPE1{core}:1.25382718931;PAX5:1.22551218842;GLI1..3:1.21640125077;NR5A1,2:1.20690858493;ZNF148:1.17458380589;IKZF1:1.12367045058;RBPJ:1.11239314462;GTF2I:1.05820284008;HAND1,2:1.04833345506;FOXM1:1.00268073618;SRF:0.995391403227;ZBTB6:0.982388657036;MAZ:0.967182537452;RORA:0.917770509879;TFAP2B:0.822720172991;LHX3,4:0.766499126783;HNF4A_NR2F1,2:0.685025999342;HOX{A5,B5}:0.630166918834;FOXL1:0.609846642329;MED-1{core}:0.569718722956;HIC1:0.545622802704;ALX4:0.544789942768;GFI1B:0.53758454843;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.490941161968;TP53:0.458507906299;MZF1:0.449737185945;NR1H4:0.441605846247;NFE2L2:0.429544728812;TEAD1:0.428208896318;REST:0.422759567002;NR6A1:0.40893095099;LEF1_TCF7_TCF7L1,2:0.387355943891;KLF4:0.362662462771;GFI1:0.356917356575;EN1,2:0.33743926551;SOX5:0.292482765006;AR:0.264276015043;NANOG:0.223129509173;T:0.22010882552;ATF6:0.215847196054;EGR1..3:0.198344069665;XBP1:0.197316171949;STAT2,4,6:0.196452118787;HOX{A6,A7,B6,B7}:0.150650527618;MEF2{A,B,C,D}:0.140434962987;UFEwm:0.102741593688;HNF1A:0.0942407462137;TBP:0.0929608626862;NR3C1:0.0765500071993;SREBF1,2:0.0758662432448;HMX1:0.0722261567571;STAT5{A,B}:0.0637485530509;POU6F1:0.0549604076367;NKX2-3_NKX2-5:0.0274672991321;RFX1:0.0207810659653;MYBL2:0.0151175388431;NHLH1,2:0.0101503549941;ZNF143:0.00916325945905;CRX:-0.00340977433045;NFATC1..3:-0.0196164898414;SMAD1..7,9:-0.0361718482462;PBX1:-0.0409142591184;BACH2:-0.0488236253265;MTF1:-0.0594949370248;TBX4,5:-0.0665809478485;NFE2:-0.0759756690514;RUNX1..3:-0.0764999262419;YY1:-0.0910900921311;MYFfamily:-0.0912377066098;LMO2:-0.117606028527;SOX{8,9,10}:-0.126642130261;FOXQ1:-0.133781542373;NFIL3:-0.15038805893;EP300:-0.157518652979;GATA4:-0.165645366318;NFE2L1:-0.176706764886;MTE{core}:-0.178615386935;FOSL2:-0.189293224119;DBP:-0.19036141391;TOPORS:-0.220301891576;FOS_FOS{B,L1}_JUN{B,D}:-0.220740528886;NFY{A,B,C}:-0.224704617388;HLF:-0.26701166813;POU2F1..3:-0.272445486986;NFKB1_REL_RELA:-0.282071073271;ZNF384:-0.308435071193;SOX17:-0.35272975353;SNAI1..3:-0.357246035403;ETS1,2:-0.361324074332;PAX2:-0.36720811926;MYOD1:-0.374471417667;STAT1,3:-0.382548569004;NANOG{mouse}:-0.389775852481;JUN:-0.409040711646;PPARG:-0.411224725533;SPZ1:-0.417172946002;ZFP161:-0.42782058014;PRDM1:-0.433649298919;NRF1:-0.439527801408;PAX3,7:-0.4399286954;CUX2:-0.445877379193;BPTF:-0.448218916778;GCM1,2:-0.452195861097;PRRX1,2:-0.458347788481;AHR_ARNT_ARNT2:-0.465036376061;ONECUT1,2:-0.504822545954;VSX1,2:-0.508193464574;ADNP_IRX_SIX_ZHX:-0.521668008794;NKX6-1,2:-0.525098527057;FOXD3:-0.526037611894;CEBPA,B_DDIT3:-0.535159815391;SOX2:-0.54380754124;SPIB:-0.546500089956;MAFB:-0.556142962532;HIF1A:-0.55731128994;FOX{D1,D2}:-0.574719152383;TGIF1:-0.585301204777;AIRE:-0.61209727061;HMGA1,2:-0.613750875068;RFX2..5_RFXANK_RFXAP:-0.614541074826;GATA6:-0.651013295738;IRF1,2:-0.65461057432;FOXO1,3,4:-0.667647248434;IRF7:-0.679086861429;HSF1,2:-0.679830632407;ALX1:-0.694811629767;ZEB1:-0.69854308433;ARID5B:-0.726568954786;HOXA9_MEIS1:-0.731521188138;POU3F1..4:-0.742167464255;SPI1:-0.743229160843;EVI1:-0.752754938196;POU5F1:-0.792719543502;FOX{F1,F2,J1}:-0.808412002748;NKX3-2:-0.810330749563;ELK1,4_GABP{A,B1}:-0.838160271503;PDX1:-0.842755106785;TFDP1:-0.860389794026;ATF4:-0.88108246073;PAX8:-0.882460351966;HOX{A4,D4}:-0.934348662429;FOXP3:-0.939196159494;TEF:-0.95807691197;BREu{core}:-0.972929438185;PAX4:-0.980294940831;ATF2:-1.04638026613;OCT4_SOX2{dimer}:-1.06867881428;NKX2-2,8:-1.08643859105;ELF1,2,4:-1.12262567447;ATF5_CREB3:-1.12836331048;CREB1:-1.15851167507;NKX3-1:-1.20159190862;HBP1_HMGB_SSRP1_UBTF:-1.20397919505;FOXP1:-1.21254483042;CDC5L:-1.21684675101;CDX1,2,4:-1.22708654785;DMAP1_NCOR{1,2}_SMARC:-1.22738224626;PAX6:-1.24404365245;TLX2:-1.2996379659;FOXA2:-1.33470660966;MYB:-1.34608269895;E2F1..5:-1.36677229874;NKX2-1,4:-1.41465113441;NFIX:-1.47247248547;POU1F1:-1.62818136852;PITX1..3:-1.84963014469;FOX{I1,J2}:-2.07515912118;IKZF2:-2.29118732018;FOXN1:-2.3020028395;ZBTB16:-2.51930326011
|top_motifs=ZNF423:2.91828645731;EBF1:2.90190177844;GTF2A1,2:2.56398374841;ESR1:2.207699476;RXRA_VDR{dimer}:2.19513710948;ZIC1..3:1.96549922069;TAL1_TCF{3,4,12}:1.91558694578;ESRRA:1.86358450693;RXR{A,B,G}:1.83388711769;GZF1:1.705774058;TFAP4:1.70436747151;ZNF238:1.62499515314;TFCP2:1.58491370814;SP1:1.57242670777;TFAP2{A,C}:1.54827286875;RREB1:1.50138674443;PAX1,9:1.45453117524;HES1:1.39605002711;TLX1..3_NFIC{dimer}:1.37706946201;PATZ1:1.34414817119;bHLH_family:1.33710280448;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.27086941209;XCPE1{core}:1.25382718931;PAX5:1.22551218842;GLI1..3:1.21640125077;NR5A1,2:1.20690858493;ZNF148:1.17458380589;IKZF1:1.12367045058;RBPJ:1.11239314462;GTF2I:1.05820284008;HAND1,2:1.04833345506;FOXM1:1.00268073618;SRF:0.995391403227;ZBTB6:0.982388657036;MAZ:0.967182537452;RORA:0.917770509879;TFAP2B:0.822720172991;LHX3,4:0.766499126783;HNF4A_NR2F1,2:0.685025999342;HOX{A5,B5}:0.630166918834;FOXL1:0.609846642329;MED-1{core}:0.569718722956;HIC1:0.545622802704;ALX4:0.544789942768;GFI1B:0.53758454843;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.490941161968;TP53:0.458507906299;MZF1:0.449737185945;NR1H4:0.441605846247;NFE2L2:0.429544728812;TEAD1:0.428208896318;REST:0.422759567002;NR6A1:0.40893095099;LEF1_TCF7_TCF7L1,2:0.387355943891;KLF4:0.362662462771;GFI1:0.356917356575;EN1,2:0.33743926551;SOX5:0.292482765006;AR:0.264276015043;NANOG:0.223129509173;T:0.22010882552;ATF6:0.215847196054;EGR1..3:0.198344069665;XBP1:0.197316171949;STAT2,4,6:0.196452118787;HOX{A6,A7,B6,B7}:0.150650527618;MEF2{A,B,C,D}:0.140434962987;UFEwm:0.102741593688;HNF1A:0.0942407462137;TBP:0.0929608626862;NR3C1:0.0765500071993;SREBF1,2:0.0758662432448;HMX1:0.0722261567571;STAT5{A,B}:0.0637485530509;POU6F1:0.0549604076367;NKX2-3_NKX2-5:0.0274672991321;RFX1:0.0207810659653;MYBL2:0.0151175388431;NHLH1,2:0.0101503549941;ZNF143:0.00916325945905;CRX:-0.00340977433045;NFATC1..3:-0.0196164898414;SMAD1..7,9:-0.0361718482462;PBX1:-0.0409142591184;BACH2:-0.0488236253265;MTF1:-0.0594949370248;TBX4,5:-0.0665809478485;NFE2:-0.0759756690514;RUNX1..3:-0.0764999262419;YY1:-0.0910900921311;MYFfamily:-0.0912377066098;LMO2:-0.117606028527;SOX{8,9,10}:-0.126642130261;FOXQ1:-0.133781542373;NFIL3:-0.15038805893;EP300:-0.157518652979;GATA4:-0.165645366318;NFE2L1:-0.176706764886;MTE{core}:-0.178615386935;FOSL2:-0.189293224119;DBP:-0.19036141391;TOPORS:-0.220301891576;FOS_FOS{B,L1}_JUN{B,D}:-0.220740528886;NFY{A,B,C}:-0.224704617388;HLF:-0.26701166813;POU2F1..3:-0.272445486986;NFKB1_REL_RELA:-0.282071073271;ZNF384:-0.308435071193;SOX17:-0.35272975353;SNAI1..3:-0.357246035403;ETS1,2:-0.361324074332;PAX2:-0.36720811926;MYOD1:-0.374471417667;STAT1,3:-0.382548569004;NANOG{mouse}:-0.389775852481;JUN:-0.409040711646;PPARG:-0.411224725533;SPZ1:-0.417172946002;ZFP161:-0.42782058014;PRDM1:-0.433649298919;NRF1:-0.439527801408;PAX3,7:-0.4399286954;CUX2:-0.445877379193;BPTF:-0.448218916778;GCM1,2:-0.452195861097;PRRX1,2:-0.458347788481;AHR_ARNT_ARNT2:-0.465036376061;ONECUT1,2:-0.504822545954;VSX1,2:-0.508193464574;ADNP_IRX_SIX_ZHX:-0.521668008794;NKX6-1,2:-0.525098527057;FOXD3:-0.526037611894;CEBPA,B_DDIT3:-0.535159815391;SOX2:-0.54380754124;SPIB:-0.546500089956;MAFB:-0.556142962532;HIF1A:-0.55731128994;FOX{D1,D2}:-0.574719152383;TGIF1:-0.585301204777;AIRE:-0.61209727061;HMGA1,2:-0.613750875068;RFX2..5_RFXANK_RFXAP:-0.614541074826;GATA6:-0.651013295738;IRF1,2:-0.65461057432;FOXO1,3,4:-0.667647248434;IRF7:-0.679086861429;HSF1,2:-0.679830632407;ALX1:-0.694811629767;ZEB1:-0.69854308433;ARID5B:-0.726568954786;HOXA9_MEIS1:-0.731521188138;POU3F1..4:-0.742167464255;SPI1:-0.743229160843;EVI1:-0.752754938196;POU5F1:-0.792719543502;FOX{F1,F2,J1}:-0.808412002748;NKX3-2:-0.810330749563;ELK1,4_GABP{A,B1}:-0.838160271503;PDX1:-0.842755106785;TFDP1:-0.860389794026;ATF4:-0.88108246073;PAX8:-0.882460351966;HOX{A4,D4}:-0.934348662429;FOXP3:-0.939196159494;TEF:-0.95807691197;BREu{core}:-0.972929438185;PAX4:-0.980294940831;ATF2:-1.04638026613;OCT4_SOX2{dimer}:-1.06867881428;NKX2-2,8:-1.08643859105;ELF1,2,4:-1.12262567447;ATF5_CREB3:-1.12836331048;CREB1:-1.15851167507;NKX3-1:-1.20159190862;HBP1_HMGB_SSRP1_UBTF:-1.20397919505;FOXP1:-1.21254483042;CDC5L:-1.21684675101;CDX1,2,4:-1.22708654785;DMAP1_NCOR{1,2}_SMARC:-1.22738224626;PAX6:-1.24404365245;TLX2:-1.2996379659;FOXA2:-1.33470660966;MYB:-1.34608269895;E2F1..5:-1.36677229874;NKX2-1,4:-1.41465113441;NFIX:-1.47247248547;POU1F1:-1.62818136852;PITX1..3:-1.84963014469;FOX{I1,J2}:-2.07515912118;IKZF2:-2.29118732018;FOXN1:-2.3020028395;ZBTB16:-2.51930326011
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11491-119E6;search_select_hide=table117:FF:11491-119E6
}}
}}

Latest revision as of 18:04, 4 June 2020

Name:Pericytes, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11317
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexNA
ageNA
cell typepericyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005782
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11317 CAGE DRX008396 DRR009268
Accession ID Hg19

Library idBAMCTSS
CNhs11317 DRZ000693 DRZ002078
Accession ID Hg38

Library idBAMCTSS
CNhs11317 DRZ012043 DRZ013428
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005782
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.CCGTCC sRNA-Seq DRX037003 DRR041369
Accession ID Hg19

Library idBAMCTSS
SRhi10002.CCGTCC DRZ007011


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.465
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.201
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.016
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.296
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.558
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00806
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.861
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0216
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.425
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00474
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.194
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0777
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.056
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.274
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.144
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.201
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.55
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.409
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11317

Jaspar motifP-value
MA0002.20.636
MA0003.10.277
MA0004.10.301
MA0006.10.417
MA0007.10.321
MA0009.10.487
MA0014.10.766
MA0017.10.207
MA0018.20.0838
MA0019.10.0155
MA0024.11.19751e-4
MA0025.10.48
MA0027.10.919
MA0028.10.0675
MA0029.10.477
MA0030.10.807
MA0031.10.342
MA0035.20.87
MA0038.10.181
MA0039.20.533
MA0040.10.159
MA0041.10.196
MA0042.10.512
MA0043.10.00211
MA0046.10.0287
MA0047.20.6
MA0048.10.892
MA0050.10.0158
MA0051.10.0166
MA0052.10.372
MA0055.10.253
MA0057.10.674
MA0058.10.27
MA0059.10.558
MA0060.10.7
MA0061.10.907
MA0062.21.86241e-4
MA0065.20.116
MA0066.10.356
MA0067.10.218
MA0068.10.427
MA0069.10.259
MA0070.10.0516
MA0071.10.124
MA0072.10.733
MA0073.10.791
MA0074.10.305
MA0076.10.0157
MA0077.10.582
MA0078.10.928
MA0079.20.263
MA0080.21.61087e-5
MA0081.10.0709
MA0083.11.39795e-4
MA0084.10.879
MA0087.10.605
MA0088.10.7
MA0090.10.13
MA0091.10.00278
MA0092.10.798
MA0093.10.377
MA0099.20.559
MA0100.10.111
MA0101.10.112
MA0102.20.00272
MA0103.10.814
MA0104.20.439
MA0105.10.962
MA0106.10.967
MA0107.10.196
MA0108.25.3957e-4
MA0111.10.133
MA0112.20.0327
MA0113.10.115
MA0114.10.236
MA0115.10.892
MA0116.10.531
MA0117.10.217
MA0119.10.499
MA0122.10.762
MA0124.10.604
MA0125.10.374
MA0131.10.267
MA0135.10.0622
MA0136.12.34838e-7
MA0137.20.956
MA0138.20.277
MA0139.10.371
MA0140.10.596
MA0141.10.111
MA0142.10.276
MA0143.10.69
MA0144.10.867
MA0145.10.331
MA0146.10.00903
MA0147.10.338
MA0148.10.403
MA0149.10.135
MA0150.10.268
MA0152.10.545
MA0153.10.151
MA0154.10.106
MA0155.10.024
MA0156.12.35679e-6
MA0157.10.195
MA0159.10.668
MA0160.10.561
MA0162.10.165
MA0163.10.228
MA0164.10.43
MA0258.10.0762
MA0259.10.522



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11317

Novel motifP-value
10.41
100.16
1000.985
1010.445
1020.674
1030.913
1040.342
1050.0966
1060.317
1070.0904
1080.805
1090.12
110.206
1100.236
1110.575
1120.715
1130.0648
1140.937
1150.287
1160.235
1170.785
1180.834
1190.959
120.505
1200.322
1210.847
1220.372
1232.10785e-4
1240.544
1250.157
1260.733
1270.592
1280.376
1290.562
130.918
1300.468
1310.904
1320.131
1330.577
1340.251
1350.633
1360.83
1370.0342
1380.435
1390.855
140.789
1400.206
1410.165
1420.83
1430.324
1440.843
1450.472
1460.332
1470.38
1480.559
1490.0849
150.167
1500.628
1510.722
1520.203
1530.0639
1540.0424
1550.86
1560.629
1570.334
1580.979
1590.692
160.386
1600.0753
1610.728
1620.173
1630.621
1640.327
1650.125
1660.66
1670.188
1680.998
1690.0591
170.329
180.357
190.0843
20.167
200.732
210.802
220.0424
230.481
240.724
250.308
260.606
270.266
280.129
290.771
30.909
300.0311
310.401
322.70785e-8
330.969
340.0581
350.768
360.246
370.367
380.618
390.592
40.816
400.187
410.247
420.779
430.699
440.72
450.151
460.685
470.895
480.412
490.707
50.505
500.366
510.391
520.539
530.331
540.368
550.698
560.369
570.499
580.242
590.0156
60.387
600.451
610.906
620.295
630.746
640.328
650.061
660.872
670.754
680.187
690.134
70.971
700.664
710.898
720.57
730.121
740.152
750.818
760.293
770.0105
780.769
790.0163
80.395
800.538
810.412
820.221
830.487
840.312
850.159
860.93
870.924
880.268
890.265
90.0838
900.0187
910.335
920.998
930.709
940.936
950.518
960.616
970.388
980.462
990.0139



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11317


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0002575 (central nervous system pericyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000133 (human pericyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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