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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005350
|DRA_sample_Accession=CAGE@SAMD00005350
|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623
|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623;DRZ011588;DRZ012973
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
Line 53: Line 53:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10852
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10852
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10852
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10852
|name=mesothelioma cell line:Mero-48a
|name=mesothelioma cell line:Mero-48a
|namespace=FANTOM5
|namespace=FANTOM5
Line 62: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 100: Line 100:
|top_motifs=AIRE:1.45813574767;HSF1,2:1.23050133001;TEF:1.20351758506;ELK1,4_GABP{A,B1}:1.07765644108;NFE2L1:1.05464096819;EVI1:0.964297023224;NKX3-1:0.960056597752;TEAD1:0.934742051228;HOX{A5,B5}:0.868259307685;ADNP_IRX_SIX_ZHX:0.83515319513;NR3C1:0.783945062016;GATA4:0.757387537515;POU1F1:0.75365001386;GZF1:0.713080418945;TAL1_TCF{3,4,12}:0.681439906032;UFEwm:0.676301196681;ARID5B:0.675151612623;NR6A1:0.584395075374;ZNF384:0.579664096173;GCM1,2:0.571002955985;bHLH_family:0.547837449142;KLF4:0.539006452406;GFI1B:0.535177437032;GFI1:0.53403876648;HOXA9_MEIS1:0.533813531785;ONECUT1,2:0.514178078472;GLI1..3:0.457465452785;LMO2:0.440054827524;ZBTB6:0.438492252331;POU3F1..4:0.429259353387;CDX1,2,4:0.404435934661;PAX5:0.391908612974;HMGA1,2:0.385261014144;BACH2:0.364604135952;HIF1A:0.355543807708;NKX6-1,2:0.352342456512;ZBTB16:0.35058188826;POU5F1:0.343575031881;TP53:0.342797088821;NR1H4:0.306324485603;RXR{A,B,G}:0.305532730503;NRF1:0.303406204395;ZNF143:0.277600750355;XCPE1{core}:0.274717266839;MYBL2:0.268012581625;EN1,2:0.258520863726;PRRX1,2:0.258478863648;PAX4:0.253059070356;NKX3-2:0.249673073218;POU6F1:0.20257104336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.202072398646;TBX4,5:0.201646292162;NFE2L2:0.19088684885;NFY{A,B,C}:0.188754794937;SNAI1..3:0.178141057921;LHX3,4:0.159921211237;YY1:0.14811653717;MZF1:0.147771305055;TLX1..3_NFIC{dimer}:0.142408087423;NFE2:0.137061404332;PPARG:0.123676685056;TOPORS:0.119800423379;SOX17:0.0991763223778;IKZF1:0.0728175012648;GTF2A1,2:0.0659380164224;ELF1,2,4:0.0636614267222;FOXQ1:0.0636185270794;PITX1..3:0.0599552919843;ZEB1:0.0578881744172;MYOD1:0.0567691308774;FOS_FOS{B,L1}_JUN{B,D}:0.0390752733639;MYB:0.0371369170495;TBP:0.0307790950489;ATF6:0.0213805432525;XBP1:0.0156368644991;E2F1..5:0.0036632859824;NKX2-2,8:0.00289397761435;ZNF148:-0.00110487942095;FOXN1:-0.00819207978584;GTF2I:-0.00922043679647;FOX{I1,J2}:-0.0136413507244;MTF1:-0.0155447492424;SOX2:-0.0173914172582;TFAP2B:-0.0257372966712;HES1:-0.0260221110821;CDC5L:-0.0299212380312;RXRA_VDR{dimer}:-0.0342814337982;HOX{A4,D4}:-0.0436841537072;SRF:-0.0518877171518;RFX1:-0.0613782797758;SP1:-0.0646552083955;PRDM1:-0.0765785151179;STAT1,3:-0.077489197825;FOXA2:-0.0778554937685;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0812641853819;TFDP1:-0.0964550214103;PAX3,7:-0.110150634587;NFATC1..3:-0.11850532401;TFAP2{A,C}:-0.123686977629;ALX1:-0.12566093814;EP300:-0.125791603997;PDX1:-0.1445424413;HLF:-0.145333664887;AHR_ARNT_ARNT2:-0.161811661011;OCT4_SOX2{dimer}:-0.161887408516;STAT5{A,B}:-0.164964715254;PAX6:-0.17173246425;HNF4A_NR2F1,2:-0.172654273083;T:-0.177673968319;HOX{A6,A7,B6,B7}:-0.18060641104;IRF1,2:-0.19113744133;FOXM1:-0.19662036946;FOSL2:-0.19717645404;HNF1A:-0.197435477779;HBP1_HMGB_SSRP1_UBTF:-0.211199728302;TFCP2:-0.212051476381;ALX4:-0.213743789962;IRF7:-0.229117945819;FOXL1:-0.231976222964;MYFfamily:-0.234824803583;PAX8:-0.237843569941;REST:-0.271653172371;DBP:-0.273375432296;ZIC1..3:-0.275847637578;BREu{core}:-0.282956601522;NFKB1_REL_RELA:-0.28804435966;MAZ:-0.295393664618;ATF5_CREB3:-0.297338770818;PBX1:-0.300030518391;IKZF2:-0.319540555953;CRX:-0.324637079599;MAFB:-0.325042966924;SPIB:-0.339189181896;HAND1,2:-0.348611369216;HIC1:-0.353507593812;SOX{8,9,10}:-0.373926759033;SMAD1..7,9:-0.379014481766;NKX2-3_NKX2-5:-0.381800371168;NFIX:-0.39059977962;GATA6:-0.411181958835;AR:-0.411958541616;NR5A1,2:-0.43577401239;FOXO1,3,4:-0.445123179472;CUX2:-0.450063262912;LEF1_TCF7_TCF7L1,2:-0.450773300295;NKX2-1,4:-0.455600801487;NHLH1,2:-0.46836842986;PAX2:-0.470072714119;MTE{core}:-0.473940107768;FOXP1:-0.476147153796;ZFP161:-0.489368752156;ETS1,2:-0.497770154417;RUNX1..3:-0.524518401303;EGR1..3:-0.546543723175;FOX{D1,D2}:-0.558962969013;EBF1:-0.574316535463;VSX1,2:-0.577735293581;POU2F1..3:-0.578790432464;MED-1{core}:-0.585069102932;FOXD3:-0.606035921664;MEF2{A,B,C,D}:-0.606127923488;FOX{F1,F2,J1}:-0.612046497412;ZNF238:-0.618601905042;CEBPA,B_DDIT3:-0.627693063771;SPI1:-0.632077128433;TFAP4:-0.676128713687;ATF2:-0.681562772881;RBPJ:-0.690230409621;DMAP1_NCOR{1,2}_SMARC:-0.691011139694;ATF4:-0.695899773597;CREB1:-0.704326053718;PATZ1:-0.7071719762;HMX1:-0.708785407964;STAT2,4,6:-0.716601717373;NANOG:-0.758426264573;FOXP3:-0.760302290862;SREBF1,2:-0.807377632879;ESR1:-0.808952075968;SPZ1:-0.825708275688;ZNF423:-0.834149676937;TGIF1:-0.836207788623;ESRRA:-0.879601654232;RFX2..5_RFXANK_RFXAP:-0.880285794703;NANOG{mouse}:-0.891133553754;RREB1:-0.892007988095;JUN:-0.941961813206;RORA:-1.05399424821;SOX5:-1.05687225018;TLX2:-1.1170209785;NFIL3:-1.16083481251;BPTF:-1.27150094618;PAX1,9:-1.91089370762
|top_motifs=AIRE:1.45813574767;HSF1,2:1.23050133001;TEF:1.20351758506;ELK1,4_GABP{A,B1}:1.07765644108;NFE2L1:1.05464096819;EVI1:0.964297023224;NKX3-1:0.960056597752;TEAD1:0.934742051228;HOX{A5,B5}:0.868259307685;ADNP_IRX_SIX_ZHX:0.83515319513;NR3C1:0.783945062016;GATA4:0.757387537515;POU1F1:0.75365001386;GZF1:0.713080418945;TAL1_TCF{3,4,12}:0.681439906032;UFEwm:0.676301196681;ARID5B:0.675151612623;NR6A1:0.584395075374;ZNF384:0.579664096173;GCM1,2:0.571002955985;bHLH_family:0.547837449142;KLF4:0.539006452406;GFI1B:0.535177437032;GFI1:0.53403876648;HOXA9_MEIS1:0.533813531785;ONECUT1,2:0.514178078472;GLI1..3:0.457465452785;LMO2:0.440054827524;ZBTB6:0.438492252331;POU3F1..4:0.429259353387;CDX1,2,4:0.404435934661;PAX5:0.391908612974;HMGA1,2:0.385261014144;BACH2:0.364604135952;HIF1A:0.355543807708;NKX6-1,2:0.352342456512;ZBTB16:0.35058188826;POU5F1:0.343575031881;TP53:0.342797088821;NR1H4:0.306324485603;RXR{A,B,G}:0.305532730503;NRF1:0.303406204395;ZNF143:0.277600750355;XCPE1{core}:0.274717266839;MYBL2:0.268012581625;EN1,2:0.258520863726;PRRX1,2:0.258478863648;PAX4:0.253059070356;NKX3-2:0.249673073218;POU6F1:0.20257104336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.202072398646;TBX4,5:0.201646292162;NFE2L2:0.19088684885;NFY{A,B,C}:0.188754794937;SNAI1..3:0.178141057921;LHX3,4:0.159921211237;YY1:0.14811653717;MZF1:0.147771305055;TLX1..3_NFIC{dimer}:0.142408087423;NFE2:0.137061404332;PPARG:0.123676685056;TOPORS:0.119800423379;SOX17:0.0991763223778;IKZF1:0.0728175012648;GTF2A1,2:0.0659380164224;ELF1,2,4:0.0636614267222;FOXQ1:0.0636185270794;PITX1..3:0.0599552919843;ZEB1:0.0578881744172;MYOD1:0.0567691308774;FOS_FOS{B,L1}_JUN{B,D}:0.0390752733639;MYB:0.0371369170495;TBP:0.0307790950489;ATF6:0.0213805432525;XBP1:0.0156368644991;E2F1..5:0.0036632859824;NKX2-2,8:0.00289397761435;ZNF148:-0.00110487942095;FOXN1:-0.00819207978584;GTF2I:-0.00922043679647;FOX{I1,J2}:-0.0136413507244;MTF1:-0.0155447492424;SOX2:-0.0173914172582;TFAP2B:-0.0257372966712;HES1:-0.0260221110821;CDC5L:-0.0299212380312;RXRA_VDR{dimer}:-0.0342814337982;HOX{A4,D4}:-0.0436841537072;SRF:-0.0518877171518;RFX1:-0.0613782797758;SP1:-0.0646552083955;PRDM1:-0.0765785151179;STAT1,3:-0.077489197825;FOXA2:-0.0778554937685;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0812641853819;TFDP1:-0.0964550214103;PAX3,7:-0.110150634587;NFATC1..3:-0.11850532401;TFAP2{A,C}:-0.123686977629;ALX1:-0.12566093814;EP300:-0.125791603997;PDX1:-0.1445424413;HLF:-0.145333664887;AHR_ARNT_ARNT2:-0.161811661011;OCT4_SOX2{dimer}:-0.161887408516;STAT5{A,B}:-0.164964715254;PAX6:-0.17173246425;HNF4A_NR2F1,2:-0.172654273083;T:-0.177673968319;HOX{A6,A7,B6,B7}:-0.18060641104;IRF1,2:-0.19113744133;FOXM1:-0.19662036946;FOSL2:-0.19717645404;HNF1A:-0.197435477779;HBP1_HMGB_SSRP1_UBTF:-0.211199728302;TFCP2:-0.212051476381;ALX4:-0.213743789962;IRF7:-0.229117945819;FOXL1:-0.231976222964;MYFfamily:-0.234824803583;PAX8:-0.237843569941;REST:-0.271653172371;DBP:-0.273375432296;ZIC1..3:-0.275847637578;BREu{core}:-0.282956601522;NFKB1_REL_RELA:-0.28804435966;MAZ:-0.295393664618;ATF5_CREB3:-0.297338770818;PBX1:-0.300030518391;IKZF2:-0.319540555953;CRX:-0.324637079599;MAFB:-0.325042966924;SPIB:-0.339189181896;HAND1,2:-0.348611369216;HIC1:-0.353507593812;SOX{8,9,10}:-0.373926759033;SMAD1..7,9:-0.379014481766;NKX2-3_NKX2-5:-0.381800371168;NFIX:-0.39059977962;GATA6:-0.411181958835;AR:-0.411958541616;NR5A1,2:-0.43577401239;FOXO1,3,4:-0.445123179472;CUX2:-0.450063262912;LEF1_TCF7_TCF7L1,2:-0.450773300295;NKX2-1,4:-0.455600801487;NHLH1,2:-0.46836842986;PAX2:-0.470072714119;MTE{core}:-0.473940107768;FOXP1:-0.476147153796;ZFP161:-0.489368752156;ETS1,2:-0.497770154417;RUNX1..3:-0.524518401303;EGR1..3:-0.546543723175;FOX{D1,D2}:-0.558962969013;EBF1:-0.574316535463;VSX1,2:-0.577735293581;POU2F1..3:-0.578790432464;MED-1{core}:-0.585069102932;FOXD3:-0.606035921664;MEF2{A,B,C,D}:-0.606127923488;FOX{F1,F2,J1}:-0.612046497412;ZNF238:-0.618601905042;CEBPA,B_DDIT3:-0.627693063771;SPI1:-0.632077128433;TFAP4:-0.676128713687;ATF2:-0.681562772881;RBPJ:-0.690230409621;DMAP1_NCOR{1,2}_SMARC:-0.691011139694;ATF4:-0.695899773597;CREB1:-0.704326053718;PATZ1:-0.7071719762;HMX1:-0.708785407964;STAT2,4,6:-0.716601717373;NANOG:-0.758426264573;FOXP3:-0.760302290862;SREBF1,2:-0.807377632879;ESR1:-0.808952075968;SPZ1:-0.825708275688;ZNF423:-0.834149676937;TGIF1:-0.836207788623;ESRRA:-0.879601654232;RFX2..5_RFXANK_RFXAP:-0.880285794703;NANOG{mouse}:-0.891133553754;RREB1:-0.892007988095;JUN:-0.941961813206;RORA:-1.05399424821;SOX5:-1.05687225018;TLX2:-1.1170209785;NFIL3:-1.16083481251;BPTF:-1.27150094618;PAX1,9:-1.91089370762
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10852-111F6;search_select_hide=table117:FF:10852-111F6
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:Mero-48a
Species:Human (Homo sapiens)
Library ID:CNhs13068
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineMero-48a
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005350
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13068 CAGE DRX007941 DRR008813
Accession ID Hg19

Library idBAMCTSS
CNhs13068 DRZ000238 DRZ001623
Accession ID Hg38

Library idBAMCTSS
CNhs13068 DRZ011588 DRZ012973
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.301
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.16
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.334
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.149
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0754
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.165
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0359
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0904
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.173
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0904
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.418
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.334
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0904
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13068

Jaspar motifP-value
MA0002.20.00829
MA0003.10.935
MA0004.10.662
MA0006.10.201
MA0007.10.0875
MA0009.10.587
MA0014.10.914
MA0017.10.967
MA0018.24.65276e-4
MA0019.10.858
MA0024.10.395
MA0025.10.00455
MA0027.10.172
MA0028.11.79114e-6
MA0029.10.706
MA0030.10.0138
MA0031.10.0116
MA0035.20.527
MA0038.10.603
MA0039.20.0366
MA0040.10.444
MA0041.10.529
MA0042.10.711
MA0043.13.98492e-7
MA0046.10.122
MA0047.20.00298
MA0048.10.449
MA0050.10.0404
MA0051.10.627
MA0052.17.77123e-5
MA0055.10.176
MA0057.10.0374
MA0058.10.459
MA0059.10.127
MA0060.10.845
MA0061.10.0151
MA0062.21.3248e-5
MA0065.20.77
MA0066.10.658
MA0067.10.00102
MA0068.12.20101e-4
MA0069.10.292
MA0070.10.698
MA0071.10.282
MA0072.10.106
MA0073.10.257
MA0074.10.956
MA0076.11.0573e-5
MA0077.10.418
MA0078.10.494
MA0079.20.318
MA0080.28.74823e-12
MA0081.10.0698
MA0083.10.189
MA0084.10.499
MA0087.10.549
MA0088.10.388
MA0090.12.16634e-5
MA0091.10.161
MA0092.10.89
MA0093.10.715
MA0099.20.00203
MA0100.10.707
MA0101.10.0324
MA0102.23.77894e-8
MA0103.10.264
MA0104.20.589
MA0105.10.0392
MA0106.10.0266
MA0107.10.00501
MA0108.20.0152
MA0111.10.77
MA0112.20.537
MA0113.10.603
MA0114.10.744
MA0115.10.0946
MA0116.10.103
MA0117.10.698
MA0119.10.757
MA0122.10.988
MA0124.10.0386
MA0125.10.372
MA0131.10.215
MA0135.10.0381
MA0136.14.78903e-9
MA0137.20.022
MA0138.20.0968
MA0139.10.616
MA0140.10.627
MA0141.10.257
MA0142.10.442
MA0143.10.283
MA0144.10.0556
MA0145.10.77
MA0146.10.718
MA0147.10.615
MA0148.10.00703
MA0149.10.436
MA0150.10.959
MA0152.10.985
MA0153.10.0924
MA0154.10.0383
MA0155.10.177
MA0156.10.171
MA0157.10.195
MA0159.10.366
MA0160.10.118
MA0162.10.139
MA0163.10.818
MA0164.10.509
MA0258.10.211
MA0259.10.329



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13068

Novel motifP-value
10.924
100.474
1000.836
1010.194
1020.648
1030.447
1040.306
1050.0216
1060.0685
1070.746
1080.847
1090.744
110.823
1100.966
1110.567
1120.519
1130.0152
1140.331
1150.326
1160.548
1170.956
1180.0646
1190.62
120.694
1200.0481
1210.17
1220.648
1230.00645
1240.0401
1250.217
1260.55
1270.123
1280.00783
1290.372
130.577
1300.565
1310.149
1320.762
1330.908
1340.243
1350.0972
1360.252
1370.0484
1380.419
1390.184
140.439
1400.313
1410.0331
1420.511
1430.215
1440.854
1450.212
1460.778
1470.32
1480.6
1490.222
150.562
1500.171
1510.9
1520.0811
1530.768
1540.304
1550.0224
1560.442
1570.643
1580.013
1590.834
160.716
1600.787
1610.052
1620.433
1630.21
1640.0268
1650.398
1660.603
1670.783
1680.913
1690.362
170.355
180.458
190.807
20.767
200.307
210.0851
220.432
230.712
240.295
250.717
260.232
270.701
280.613
290.0215
30.595
300.684
310.568
320.0833
330.975
340.239
350.118
360.139
370.454
380.702
390.953
40.429
400.62
410.0749
420.858
430.0602
440.245
450.178
460.986
470.595
480.737
490.0565
50.205
500.781
510.673
520.347
530.236
540.599
550.153
560.874
570.378
580.338
590.794
60.642
600.151
610.43
620.741
630.408
640.546
650.278
660.251
670.933
680.539
690.282
70.302
700.832
710.778
720.597
730.0422
740.641
750.636
760.849
770.851
780.755
790.611
80.864
800.1
810.679
820.277
830.409
840.192
850.02
860.0352
870.189
880.601
890.836
90.146
900.295
910.748
920.452
930.415
940.773
950.674
960.977
970.996
980.0458
990.031



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13068


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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