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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005050
|DRA_sample_Accession=CAGE@SAMD00005050
|accession_numbers=CAGE;DRX008294;DRR009166;DRZ000591;DRZ001976
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005050
|accession_numbers=CAGE;DRX008294;DRR009166;DRZ000591;DRZ001976;DRZ011941;DRZ013326
|accession_numbers_RNASeq=sRNA-Seq;DRX037167;DRR041533;DRZ007175
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
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|microRNAs=
|microRNAs=
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|microRNAs_nn=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11302
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACAGTG.11302
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACAGTG.11302
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11302
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11302
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACAGTG.11302
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACAGTG.11302
|name=Gingival epithelial cells, donor2 (GEA14)
|name=Gingival epithelial cells, donor2 (GEA14)
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485
|top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11302-117B6;search_select_hide=table117:FF:11302-117B6
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Gingival epithelial cells, donor2 (GEA14)
Species:Human (Homo sapiens)
Library ID:CNhs11896
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stage38 years old adult
sexfemale
age38
cell typeepithelial cell
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005050
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11896 CAGE DRX008294 DRR009166
Accession ID Hg19

Library idBAMCTSS
CNhs11896 DRZ000591 DRZ001976
Accession ID Hg38

Library idBAMCTSS
CNhs11896 DRZ011941 DRZ013326
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005050
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.ACAGTG sRNA-Seq DRX037167 DRR041533
Accession ID Hg19

Library idBAMCTSS
SRhi10011.ACAGTG DRZ007175


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0456
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.126
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.374
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0609
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.105
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.259
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.464
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.023
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.197
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.707
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.00183
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.189
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.26
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.26
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11896

Jaspar motifP-value
MA0002.20.773
MA0003.10.744
MA0004.10.107
MA0006.10.0147
MA0007.10.97
MA0009.10.184
MA0014.10.093
MA0017.10.914
MA0018.20.00755
MA0019.10.307
MA0024.10.0555
MA0025.10.863
MA0027.10.475
MA0028.10.237
MA0029.10.381
MA0030.10.369
MA0031.10.321
MA0035.20.261
MA0038.10.89
MA0039.29.65792e-4
MA0040.10.273
MA0041.10.34
MA0042.10.612
MA0043.10.151
MA0046.10.513
MA0047.20.63
MA0048.10.817
MA0050.10.145
MA0051.10.545
MA0052.10.0261
MA0055.10.00168
MA0057.10.0853
MA0058.10.0181
MA0059.10.694
MA0060.10.43
MA0061.10.647
MA0062.20.452
MA0065.20.631
MA0066.10.242
MA0067.10.0256
MA0068.10.0563
MA0069.10.467
MA0070.10.432
MA0071.10.0228
MA0072.10.311
MA0073.10.913
MA0074.10.307
MA0076.10.837
MA0077.10.178
MA0078.10.769
MA0079.20.25
MA0080.20.022
MA0081.10.21
MA0083.10.294
MA0084.10.183
MA0087.10.863
MA0088.10.836
MA0090.11.13285e-6
MA0091.10.348
MA0092.10.599
MA0093.10.0731
MA0099.24.16096e-16
MA0100.10.171
MA0101.10.116
MA0102.20.537
MA0103.15.73818e-7
MA0104.20.117
MA0105.10.988
MA0106.12.48529e-14
MA0107.10.0426
MA0108.20.678
MA0111.10.876
MA0112.20.522
MA0113.10.874
MA0114.10.808
MA0115.10.662
MA0116.10.625
MA0117.10.851
MA0119.10.196
MA0122.10.724
MA0124.10.507
MA0125.10.0404
MA0131.10.904
MA0135.10.456
MA0136.10.996
MA0137.20.552
MA0138.20.627
MA0139.10.971
MA0140.10.81
MA0141.10.0616
MA0142.10.257
MA0143.10.355
MA0144.10.72
MA0145.10.0535
MA0146.10.369
MA0147.10.268
MA0148.10.438
MA0149.10.0218
MA0150.10.122
MA0152.10.86
MA0153.10.815
MA0154.10.441
MA0155.10.485
MA0156.10.672
MA0157.10.422
MA0159.10.953
MA0160.10.651
MA0162.10.113
MA0163.10.632
MA0164.10.961
MA0258.10.581
MA0259.10.206



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11896

Novel motifP-value
10.963
100.332
1000.555
1010.189
1020.45
1030.13
1040.866
1050.136
1060.151
1070.0663
1080.824
1090.0131
110.249
1100.484
1110.361
1120.156
1130.25
1140.346
1150.534
1160.745
1170.288
1180.871
1190.361
120.891
1200.102
1210.292
1220.54
1230.792
1240.0655
1250.249
1260.348
1270.224
1280.941
1290.103
130.0415
1300.718
1310.489
1320.34
1330.0071
1340.279
1350.636
1360.0307
1370.117
1380.923
1390.367
140.838
1400.678
1410.806
1420.708
1430.471
1440.224
1450.12
1460.0138
1470.114
1480.855
1490.825
150.881
1500.0709
1510.573
1520.00639
1530.971
1540.982
1550.827
1560.991
1570.136
1580.117
1590.476
160.0639
1600.625
1610.656
1620.309
1630.494
1640.898
1650.489
1660.37
1670.0877
1680.2
1690.11
170.342
180.414
190.701
20.442
200.575
210.678
220.591
230.15
240.0259
250.944
260.732
270.698
280.522
290.871
30.38
300.143
310.912
320.327
330.147
340.587
350.0725
360.563
370.147
380.506
390.167
40.932
400.0763
410.742
420.432
430.615
440.923
450.0209
460.721
470.317
480.121
490.479
50.904
500.42
510.826
520.0833
530.526
540.655
550.0913
560.393
570.56
580.801
590.48
60.458
600.177
610.686
620.856
630.168
640.747
650.934
660.227
670.735
680.145
690.759
70.372
700.165
710.56
720.954
730.00228
740.077
750.323
760.998
770.0327
780.0149
790.365
80.804
800.515
810.196
820.571
830.608
840.974
850.557
860.77
877.29673e-4
880.816
890.154
90.832
900.43
910.764
920.715
930.52
940.46
950.27
960.86
970.31
980.718
990.0955



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11896


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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