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{{f5samples
{{f5samples
|id=FF:11895-125E5
|DRA_sample_Accession=CAGE@SAMD00005959
|name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
|accession_numbers=CAGE;DRX007789;DRR008661;DRZ000086;DRZ001471;DRZ011436;DRZ012821
|sample_id=11895
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=125
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|rna_position=E5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000639,FF:0100297,FF:0101120,FF:0011134
|sample_cell_lot=
|comment=
|sample_cell_catalog=
|created_by=
|sample_company=
|creation_date=
|rna_lot_number=2b
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
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Line 67: Line 40:
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.75386
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=2b
|rna_od260/230=2.03
|rna_od260/280=2.02
|rna_position=E5
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=1.25E+07
|rna_weight_ug=10
|sample_age=56
|sample_category=cell lines
|sample_cell_catalog=
|sample_cell_line=Hep-2
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=epidermoid carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.21500980204551e-257!GO:0005737;cytoplasm;6.44331926081463e-209!GO:0043226;organelle;9.92537395187044e-208!GO:0043229;intracellular organelle;4.71620236425475e-207!GO:0043227;membrane-bound organelle;2.11430863062446e-206!GO:0043231;intracellular membrane-bound organelle;2.59765194776688e-206!GO:0044422;organelle part;1.05446819556489e-177!GO:0044446;intracellular organelle part;1.43316776780998e-175!GO:0044444;cytoplasmic part;2.16609999184775e-154!GO:0032991;macromolecular complex;9.79555030543996e-124!GO:0030529;ribonucleoprotein complex;6.49318898369436e-103!GO:0005739;mitochondrion;2.84868439711974e-99!GO:0044237;cellular metabolic process;4.52290119484103e-94!GO:0044238;primary metabolic process;6.40784055815948e-90!GO:0044428;nuclear part;1.94830567243249e-88!GO:0043233;organelle lumen;4.86363224988645e-88!GO:0031974;membrane-enclosed lumen;4.86363224988645e-88!GO:0003723;RNA binding;4.7061540179871e-84!GO:0005634;nucleus;5.34934975393259e-77!GO:0043170;macromolecule metabolic process;9.47013843958962e-76!GO:0005515;protein binding;3.11702306908366e-67!GO:0044429;mitochondrial part;2.09464936404576e-64!GO:0043234;protein complex;4.95196228066079e-63!GO:0006396;RNA processing;7.60521158887833e-63!GO:0005840;ribosome;2.11603738636331e-61!GO:0031090;organelle membrane;4.20589539856255e-59!GO:0006412;translation;1.2761174719518e-58!GO:0031967;organelle envelope;6.28954631326811e-57!GO:0031975;envelope;9.79655565106852e-57!GO:0003735;structural constituent of ribosome;3.86738169260327e-53!GO:0044249;cellular biosynthetic process;1.74829918795979e-52!GO:0009058;biosynthetic process;3.13482758558025e-52!GO:0031981;nuclear lumen;2.26443020252223e-51!GO:0016043;cellular component organization and biogenesis;6.81260947210852e-49!GO:0033279;ribosomal subunit;1.08945507084473e-46!GO:0019538;protein metabolic process;4.20967811332307e-46!GO:0015031;protein transport;1.65266168947839e-44!GO:0006259;DNA metabolic process;2.67762866716344e-44!GO:0033036;macromolecule localization;1.13111801830816e-43!GO:0043228;non-membrane-bound organelle;1.13111801830816e-43!GO:0043232;intracellular non-membrane-bound organelle;1.13111801830816e-43!GO:0005829;cytosol;1.40132492862888e-43!GO:0016071;mRNA metabolic process;1.47000186824928e-42!GO:0009059;macromolecule biosynthetic process;5.00263734202889e-42!GO:0005740;mitochondrial envelope;1.99323041000655e-41!GO:0044260;cellular macromolecule metabolic process;8.68307171603211e-41!GO:0008380;RNA splicing;9.80147253485145e-41!GO:0044267;cellular protein metabolic process;2.43975754816529e-40!GO:0045184;establishment of protein localization;3.58292027584056e-40!GO:0008104;protein localization;1.25387184583616e-39!GO:0019866;organelle inner membrane;1.70880309701319e-39!GO:0006397;mRNA processing;4.28747588434235e-39!GO:0031966;mitochondrial membrane;4.45351047428151e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.16820997007292e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.13397348865677e-38!GO:0005743;mitochondrial inner membrane;1.54706852571342e-37!GO:0065003;macromolecular complex assembly;5.56302642461751e-37!GO:0043283;biopolymer metabolic process;8.97380885812841e-37!GO:0006996;organelle organization and biogenesis;6.95287778566032e-36!GO:0046907;intracellular transport;2.32245655683787e-35!GO:0007049;cell cycle;6.19986983874089e-34!GO:0010467;gene expression;1.88025060830523e-32!GO:0022607;cellular component assembly;4.02717893566985e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.48491105805983e-31!GO:0005681;spliceosome;4.7545395683604e-30!GO:0005654;nucleoplasm;1.25578717740416e-29!GO:0006886;intracellular protein transport;1.25578717740416e-29!GO:0000166;nucleotide binding;2.50274537888612e-29!GO:0031980;mitochondrial lumen;1.89495414741489e-28!GO:0005759;mitochondrial matrix;1.89495414741489e-28!GO:0006974;response to DNA damage stimulus;1.13778984375913e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.4650937653837e-27!GO:0016462;pyrophosphatase activity;2.75806894235311e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;3.45524837949955e-27!GO:0006119;oxidative phosphorylation;2.03249603694419e-26!GO:0044445;cytosolic part;2.11132869570786e-26!GO:0017111;nucleoside-triphosphatase activity;3.37054685956299e-26!GO:0044455;mitochondrial membrane part;5.55863062036821e-26!GO:0015934;large ribosomal subunit;2.69016147781811e-25!GO:0022402;cell cycle process;3.16430170526294e-25!GO:0000278;mitotic cell cycle;3.16430170526294e-25!GO:0005730;nucleolus;5.22797010876408e-25!GO:0005694;chromosome;1.91380536486904e-23!GO:0006281;DNA repair;2.13547501469224e-23!GO:0044451;nucleoplasm part;4.7008214264076e-23!GO:0051186;cofactor metabolic process;6.75529333453507e-23!GO:0051649;establishment of cellular localization;8.00706391490241e-23!GO:0051641;cellular localization;8.14343288300564e-23!GO:0015935;small ribosomal subunit;1.29047643708104e-22!GO:0006457;protein folding;4.41344770817004e-22!GO:0044427;chromosomal part;1.28897479480237e-21!GO:0012505;endomembrane system;1.28897479480237e-21!GO:0009719;response to endogenous stimulus;7.31625077881721e-21!GO:0006260;DNA replication;7.96141382983606e-21!GO:0016874;ligase activity;9.08573740720818e-21!GO:0005783;endoplasmic reticulum;1.06368146690037e-20!GO:0005746;mitochondrial respiratory chain;3.4041285458572e-20!GO:0022403;cell cycle phase;3.6519357519832e-20!GO:0032553;ribonucleotide binding;4.15441917614129e-20!GO:0032555;purine ribonucleotide binding;4.15441917614129e-20!GO:0022618;protein-RNA complex assembly;5.02113098379078e-20!GO:0017076;purine nucleotide binding;5.0585786243753e-20!GO:0005761;mitochondrial ribosome;2.79025813568625e-19!GO:0000313;organellar ribosome;2.79025813568625e-19!GO:0000087;M phase of mitotic cell cycle;3.58323006113146e-19!GO:0042254;ribosome biogenesis and assembly;4.48287250600374e-19!GO:0003676;nucleic acid binding;4.97325029479136e-19!GO:0007067;mitosis;7.17819642788569e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20667017106166e-18!GO:0006732;coenzyme metabolic process;1.57967309781606e-18!GO:0005524;ATP binding;8.54553845536769e-18!GO:0044432;endoplasmic reticulum part;8.59126036003815e-18!GO:0050136;NADH dehydrogenase (quinone) activity;9.29853462509755e-18!GO:0003954;NADH dehydrogenase activity;9.29853462509755e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.29853462509755e-18!GO:0044248;cellular catabolic process;9.50055567523812e-18!GO:0032559;adenyl ribonucleotide binding;1.09605975178256e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.23135889171661e-17!GO:0016887;ATPase activity;1.37458038755282e-17!GO:0042623;ATPase activity, coupled;1.70410782189827e-17!GO:0030554;adenyl nucleotide binding;2.27413735853496e-17!GO:0008135;translation factor activity, nucleic acid binding;2.50321265134458e-17!GO:0044265;cellular macromolecule catabolic process;2.65224295642017e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.03462701085719e-17!GO:0051301;cell division;8.52936727559427e-17!GO:0006512;ubiquitin cycle;9.98724386783139e-17!GO:0000279;M phase;1.65040111801057e-16!GO:0051276;chromosome organization and biogenesis;3.00432142989924e-16!GO:0042775;organelle ATP synthesis coupled electron transport;3.89865550283378e-16!GO:0042773;ATP synthesis coupled electron transport;3.89865550283378e-16!GO:0005635;nuclear envelope;4.93949471769109e-16!GO:0044453;nuclear membrane part;5.6785882463047e-16!GO:0030964;NADH dehydrogenase complex (quinone);8.752569364299e-16!GO:0045271;respiratory chain complex I;8.752569364299e-16!GO:0005747;mitochondrial respiratory chain complex I;8.752569364299e-16!GO:0006605;protein targeting;9.84630350424683e-16!GO:0006399;tRNA metabolic process;1.14969794942299e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.4792043902e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70086431105474e-15!GO:0019941;modification-dependent protein catabolic process;2.70086431105474e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.70086431105474e-15!GO:0051082;unfolded protein binding;2.72264930584609e-15!GO:0031965;nuclear membrane;3.53038127657358e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.89328276591761e-15!GO:0000375;RNA splicing, via transesterification reactions;3.89328276591761e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.89328276591761e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.25830544230625e-15!GO:0044257;cellular protein catabolic process;4.25830544230625e-15!GO:0048770;pigment granule;4.36143960323229e-15!GO:0042470;melanosome;4.36143960323229e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.46639656543038e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63991429964224e-14!GO:0009057;macromolecule catabolic process;2.00494723212461e-14!GO:0043285;biopolymer catabolic process;2.76149711257701e-14!GO:0009055;electron carrier activity;3.3867062982918e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.46490647932677e-14!GO:0005643;nuclear pore;7.05658562412013e-14!GO:0005789;endoplasmic reticulum membrane;9.30462967217837e-14!GO:0003743;translation initiation factor activity;1.87096460248982e-13!GO:0051726;regulation of cell cycle;2.40883724313228e-13!GO:0000074;regulation of progression through cell cycle;2.74598385039992e-13!GO:0006364;rRNA processing;3.65643701630681e-13!GO:0008134;transcription factor binding;4.655808721019e-13!GO:0048193;Golgi vesicle transport;4.655808721019e-13!GO:0006413;translational initiation;5.93076798003072e-13!GO:0051188;cofactor biosynthetic process;5.94682334236779e-13!GO:0009259;ribonucleotide metabolic process;7.31069412678122e-13!GO:0016072;rRNA metabolic process;8.0225290134051e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.07979200142595e-12!GO:0065002;intracellular protein transport across a membrane;1.54698889723447e-12!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.63706822067261e-12!GO:0006913;nucleocytoplasmic transport;1.74891579027886e-12!GO:0006163;purine nucleotide metabolic process;1.76355325902746e-12!GO:0004386;helicase activity;1.86391352624673e-12!GO:0006323;DNA packaging;3.4266788773602e-12!GO:0000785;chromatin;3.6098088104985e-12!GO:0050657;nucleic acid transport;4.40406520752159e-12!GO:0051236;establishment of RNA localization;4.40406520752159e-12!GO:0050658;RNA transport;4.40406520752159e-12!GO:0006403;RNA localization;4.80593229902753e-12!GO:0051169;nuclear transport;5.96710368219798e-12!GO:0016192;vesicle-mediated transport;6.79717568148326e-12!GO:0030163;protein catabolic process;7.33489734555068e-12!GO:0046930;pore complex;7.68968272264499e-12!GO:0008026;ATP-dependent helicase activity;1.06204089337929e-11!GO:0016604;nuclear body;1.70935361682859e-11!GO:0009150;purine ribonucleotide metabolic process;2.16397275756757e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.5085275022859e-11!GO:0009260;ribonucleotide biosynthetic process;3.05655561374258e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.18576570592636e-11!GO:0006164;purine nucleotide biosynthetic process;3.66629812025827e-11!GO:0012501;programmed cell death;3.87340840179229e-11!GO:0009117;nucleotide metabolic process;3.87418461772276e-11!GO:0006461;protein complex assembly;4.35319547085106e-11!GO:0016491;oxidoreductase activity;4.67608577800794e-11!GO:0006915;apoptosis;5.66604956245421e-11!GO:0009108;coenzyme biosynthetic process;7.26485728687841e-11!GO:0008565;protein transporter activity;7.28576382830439e-11!GO:0005794;Golgi apparatus;9.3056855563478e-11!GO:0006333;chromatin assembly or disassembly;9.46831039966069e-11!GO:0016070;RNA metabolic process;1.27053144946513e-10!GO:0006446;regulation of translational initiation;1.29957714631635e-10!GO:0009060;aerobic respiration;1.69755127013274e-10!GO:0065004;protein-DNA complex assembly;2.00879482381131e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.03288504646028e-10!GO:0016787;hydrolase activity;2.37944562522157e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.5693232981282e-10!GO:0006261;DNA-dependent DNA replication;2.93958613982801e-10!GO:0051028;mRNA transport;3.0538492994465e-10!GO:0009056;catabolic process;3.16960158866771e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.16960158866771e-10!GO:0007005;mitochondrion organization and biogenesis;3.16960158866771e-10!GO:0016779;nucleotidyltransferase activity;3.74745729148056e-10!GO:0009141;nucleoside triphosphate metabolic process;3.84875209302399e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.28221622779399e-10!GO:0045333;cellular respiration;5.28348296972783e-10!GO:0008639;small protein conjugating enzyme activity;5.58332896906028e-10!GO:0008219;cell death;5.58332896906028e-10!GO:0016265;death;5.58332896906028e-10!GO:0043412;biopolymer modification;5.75871008011287e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.69641646548461e-10!GO:0009144;purine nucleoside triphosphate metabolic process;7.69641646548461e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.54345406248809e-10!GO:0015986;ATP synthesis coupled proton transport;1.31567538386482e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31567538386482e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.56436527279141e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.56436527279141e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.56436527279141e-09!GO:0004842;ubiquitin-protein ligase activity;1.59398099966148e-09!GO:0019787;small conjugating protein ligase activity;1.90158714591133e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.20250110414783e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.20250110414783e-09!GO:0003697;single-stranded DNA binding;3.00472556734659e-09!GO:0046034;ATP metabolic process;3.00610134753906e-09!GO:0017038;protein import;3.29418613428823e-09!GO:0043038;amino acid activation;3.29954065117186e-09!GO:0006418;tRNA aminoacylation for protein translation;3.29954065117186e-09!GO:0043039;tRNA aminoacylation;3.29954065117186e-09!GO:0016607;nuclear speck;5.25869108630943e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.56592766072734e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.56592766072734e-09!GO:0019829;cation-transporting ATPase activity;5.92790474181404e-09!GO:0043566;structure-specific DNA binding;6.28055269405127e-09!GO:0006366;transcription from RNA polymerase II promoter;6.32795643513365e-09!GO:0006099;tricarboxylic acid cycle;1.02956703423609e-08!GO:0046356;acetyl-CoA catabolic process;1.02956703423609e-08!GO:0016740;transferase activity;1.3068851617623e-08!GO:0006084;acetyl-CoA metabolic process;1.50652421596673e-08!GO:0016881;acid-amino acid ligase activity;1.53249770419034e-08!GO:0006754;ATP biosynthetic process;1.72874542878107e-08!GO:0006753;nucleoside phosphate metabolic process;1.72874542878107e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.15429612173274e-08!GO:0006091;generation of precursor metabolites and energy;2.18490000499969e-08!GO:0006334;nucleosome assembly;2.59839440495952e-08!GO:0006752;group transfer coenzyme metabolic process;2.97022710028259e-08!GO:0005819;spindle;3.21020382960597e-08!GO:0031497;chromatin assembly;3.21063220038985e-08!GO:0016469;proton-transporting two-sector ATPase complex;3.55878355831518e-08!GO:0005793;ER-Golgi intermediate compartment;4.01434222580572e-08!GO:0000775;chromosome, pericentric region;4.76148028186781e-08!GO:0051329;interphase of mitotic cell cycle;7.06738672492481e-08!GO:0005657;replication fork;7.28953297292255e-08!GO:0006464;protein modification process;7.49965079777941e-08!GO:0003712;transcription cofactor activity;1.0990432052576e-07!GO:0051325;interphase;1.25587798822744e-07!GO:0008033;tRNA processing;1.36724064032763e-07!GO:0051187;cofactor catabolic process;1.39058839079598e-07!GO:0008094;DNA-dependent ATPase activity;1.4746561761047e-07!GO:0005768;endosome;1.5215112751876e-07!GO:0009109;coenzyme catabolic process;2.37109147953368e-07!GO:0042981;regulation of apoptosis;2.42834099595448e-07!GO:0043067;regulation of programmed cell death;2.62542554729808e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.65390741096977e-07!GO:0045259;proton-transporting ATP synthase complex;2.69815334979528e-07!GO:0003899;DNA-directed RNA polymerase activity;2.95268646388314e-07!GO:0005762;mitochondrial large ribosomal subunit;2.97243878831602e-07!GO:0000315;organellar large ribosomal subunit;2.97243878831602e-07!GO:0000075;cell cycle checkpoint;3.28164351327456e-07!GO:0015630;microtubule cytoskeleton;3.36294854955639e-07!GO:0043623;cellular protein complex assembly;3.53453813221373e-07!GO:0030120;vesicle coat;3.99042545820323e-07!GO:0030662;coated vesicle membrane;3.99042545820323e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.97198044352009e-07!GO:0008654;phospholipid biosynthetic process;5.0612324894505e-07!GO:0043687;post-translational protein modification;6.00162196438313e-07!GO:0016853;isomerase activity;6.18328473347615e-07!GO:0000245;spliceosome assembly;6.3129611475242e-07!GO:0016568;chromatin modification;6.4241370861004e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.19972279338697e-07!GO:0009165;nucleotide biosynthetic process;9.62807221715709e-07!GO:0005667;transcription factor complex;9.74775770136579e-07!GO:0048475;coated membrane;1.05566950178651e-06!GO:0030117;membrane coat;1.05566950178651e-06!GO:0007051;spindle organization and biogenesis;1.07806239527197e-06!GO:0003724;RNA helicase activity;1.30755496069278e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.34914065381325e-06!GO:0032446;protein modification by small protein conjugation;1.72227628752489e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.96671946881933e-06!GO:0051427;hormone receptor binding;2.05218257224136e-06!GO:0004298;threonine endopeptidase activity;2.54054405909153e-06!GO:0051170;nuclear import;2.57468188728356e-06!GO:0016567;protein ubiquitination;2.96118200760599e-06!GO:0000314;organellar small ribosomal subunit;3.31454860749956e-06!GO:0005763;mitochondrial small ribosomal subunit;3.31454860749956e-06!GO:0003924;GTPase activity;3.84838569178451e-06!GO:0006916;anti-apoptosis;4.07113110118895e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.14119663131615e-06!GO:0000151;ubiquitin ligase complex;4.14119663131615e-06!GO:0051168;nuclear export;4.34585730987707e-06!GO:0035257;nuclear hormone receptor binding;5.01783895450779e-06!GO:0006302;double-strand break repair;5.352953557674e-06!GO:0043069;negative regulation of programmed cell death;5.45123237901955e-06!GO:0006613;cotranslational protein targeting to membrane;6.14370253604813e-06!GO:0051246;regulation of protein metabolic process;6.53077810502721e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.61300508549804e-06!GO:0006082;organic acid metabolic process;7.59546979402161e-06!GO:0005813;centrosome;7.93381923329864e-06!GO:0019752;carboxylic acid metabolic process;8.00848969730015e-06!GO:0043066;negative regulation of apoptosis;8.00848969730015e-06!GO:0006606;protein import into nucleus;9.68289896104126e-06!GO:0006414;translational elongation;1.00563686327454e-05!GO:0046474;glycerophospholipid biosynthetic process;1.01829406820023e-05!GO:0044452;nucleolar part;1.03384754845668e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.04802459841395e-05!GO:0015399;primary active transmembrane transporter activity;1.04802459841395e-05!GO:0046483;heterocycle metabolic process;1.10816415594365e-05!GO:0048523;negative regulation of cellular process;1.32616488870726e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.3972727344222e-05!GO:0005815;microtubule organizing center;1.43488477195699e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.43909727779367e-05!GO:0045454;cell redox homeostasis;1.68761859147785e-05!GO:0007088;regulation of mitosis;1.96712986884861e-05!GO:0005788;endoplasmic reticulum lumen;2.02075380577855e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.06627483519666e-05!GO:0044440;endosomal part;2.07849035743792e-05!GO:0010008;endosome membrane;2.07849035743792e-05!GO:0005773;vacuole;2.09406105952847e-05!GO:0051052;regulation of DNA metabolic process;2.17672288400036e-05!GO:0006626;protein targeting to mitochondrion;2.30553988668657e-05!GO:0005770;late endosome;2.30687817830319e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.69754238359132e-05!GO:0003682;chromatin binding;2.70305463309256e-05!GO:0008168;methyltransferase activity;2.7408264183509e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;3.13617690655029e-05!GO:0031324;negative regulation of cellular metabolic process;3.42440799122316e-05!GO:0016126;sterol biosynthetic process;3.44507111520064e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.49445363650345e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;3.71859493753932e-05!GO:0050662;coenzyme binding;3.95999023226946e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.03387781938078e-05!GO:0016859;cis-trans isomerase activity;4.17085692020751e-05!GO:0043021;ribonucleoprotein binding;4.44631683846973e-05!GO:0000786;nucleosome;4.63016726893588e-05!GO:0006839;mitochondrial transport;5.13673580619789e-05!GO:0008186;RNA-dependent ATPase activity;5.20376042457469e-05!GO:0006310;DNA recombination;5.2472751027536e-05!GO:0046489;phosphoinositide biosynthetic process;5.78364796729966e-05!GO:0030867;rough endoplasmic reticulum membrane;6.66728636453506e-05!GO:0000776;kinetochore;6.78104871876971e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;6.95158566889735e-05!GO:0043681;protein import into mitochondrion;7.15393588807877e-05!GO:0003713;transcription coactivator activity;7.31988567971752e-05!GO:0004527;exonuclease activity;7.34064774646153e-05!GO:0003684;damaged DNA binding;7.34064774646153e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.39845878212731e-05!GO:0005525;GTP binding;7.82336155598202e-05!GO:0045786;negative regulation of progression through cell cycle;8.39873986252931e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.43278059869081e-05!GO:0019867;outer membrane;8.43540871629076e-05!GO:0000323;lytic vacuole;8.63070064205419e-05!GO:0005764;lysosome;8.63070064205419e-05!GO:0003690;double-stranded DNA binding;8.78071368847849e-05!GO:0006793;phosphorus metabolic process;8.93840217402551e-05!GO:0006796;phosphate metabolic process;8.93840217402551e-05!GO:0008610;lipid biosynthetic process;0.000115534320930228!GO:0006695;cholesterol biosynthetic process;0.000116810395553865!GO:0031968;organelle outer membrane;0.00011915769537212!GO:0004518;nuclease activity;0.000135322693046296!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000143130599205496!GO:0004004;ATP-dependent RNA helicase activity;0.000145431900873386!GO:0051789;response to protein stimulus;0.000147322812830903!GO:0006986;response to unfolded protein;0.000147322812830903!GO:0009892;negative regulation of metabolic process;0.000149304134419519!GO:0006612;protein targeting to membrane;0.000159636813294527!GO:0000059;protein import into nucleus, docking;0.000179333551719905!GO:0006650;glycerophospholipid metabolic process;0.000183278423961802!GO:0003678;DNA helicase activity;0.000191527700041783!GO:0007059;chromosome segregation;0.000196652510917407!GO:0006383;transcription from RNA polymerase III promoter;0.000210693005715815!GO:0048037;cofactor binding;0.000217725934651293!GO:0048471;perinuclear region of cytoplasm;0.000218572361096495!GO:0005798;Golgi-associated vesicle;0.000225482143942757!GO:0043284;biopolymer biosynthetic process;0.00023029997222437!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000261739038394823!GO:0042802;identical protein binding;0.000275453297800016!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000275453297800016!GO:0048519;negative regulation of biological process;0.000313491445809885!GO:0016310;phosphorylation;0.000337537404979211!GO:0006275;regulation of DNA replication;0.000338419644294501!GO:0033116;ER-Golgi intermediate compartment membrane;0.000346522521107728!GO:0043596;nuclear replication fork;0.000355933881285079!GO:0009112;nucleobase metabolic process;0.000367434604292836!GO:0043492;ATPase activity, coupled to movement of substances;0.00039247397256917!GO:0044431;Golgi apparatus part;0.000397663921292603!GO:0005048;signal sequence binding;0.000398738538910197!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000399412256586988!GO:0006950;response to stress;0.000405177258475318!GO:0016363;nuclear matrix;0.000430025791165971!GO:0003729;mRNA binding;0.000439913983982502!GO:0019843;rRNA binding;0.00044157990172146!GO:0006118;electron transport;0.000444387778534175!GO:0031988;membrane-bound vesicle;0.000451415432807373!GO:0005791;rough endoplasmic reticulum;0.000452663154599569!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000453224688715376!GO:0051920;peroxiredoxin activity;0.000471004634345147!GO:0031072;heat shock protein binding;0.000481305267235436!GO:0005741;mitochondrial outer membrane;0.000498412895008451!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000518894704415854!GO:0051287;NAD binding;0.00052589541778896!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000557667962848251!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000587055955450729!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000589717751753616!GO:0005684;U2-dependent spliceosome;0.000592009479304007!GO:0051540;metal cluster binding;0.000636636330897161!GO:0051536;iron-sulfur cluster binding;0.000636636330897161!GO:0015992;proton transport;0.00064864196713277!GO:0044262;cellular carbohydrate metabolic process;0.000668773250707704!GO:0006506;GPI anchor biosynthetic process;0.000677142228649028!GO:0006767;water-soluble vitamin metabolic process;0.000700505853090066!GO:0016563;transcription activator activity;0.000730812027090481!GO:0005885;Arp2/3 protein complex;0.000734371633057642!GO:0016023;cytoplasmic membrane-bound vesicle;0.000740193624593083!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000752045389712407!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000752045389712407!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000752045389712407!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000757914699365333!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000757914699365333!GO:0032561;guanyl ribonucleotide binding;0.000770332179482926!GO:0019001;guanyl nucleotide binding;0.000770332179482926!GO:0032508;DNA duplex unwinding;0.000787729974476242!GO:0032392;DNA geometric change;0.000787729974476242!GO:0009116;nucleoside metabolic process;0.000810494195022459!GO:0006520;amino acid metabolic process;0.000810494195022459!GO:0006818;hydrogen transport;0.000816864492081823!GO:0065009;regulation of a molecular function;0.000821529151506873!GO:0046467;membrane lipid biosynthetic process;0.00082445797236573!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00082487479987014!GO:0030880;RNA polymerase complex;0.000849896218429926!GO:0007006;mitochondrial membrane organization and biogenesis;0.000884958454029878!GO:0030176;integral to endoplasmic reticulum membrane;0.000958975264095687!GO:0007052;mitotic spindle organization and biogenesis;0.000969385972898375!GO:0007093;mitotic cell cycle checkpoint;0.00100112995206173!GO:0006270;DNA replication initiation;0.00103489303679519!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0010359852996727!GO:0006505;GPI anchor metabolic process;0.0010371753800843!GO:0006405;RNA export from nucleus;0.00105634844998739!GO:0051087;chaperone binding;0.0010600436705715!GO:0006284;base-excision repair;0.001061546315555!GO:0030384;phosphoinositide metabolic process;0.00112767592547308!GO:0008361;regulation of cell size;0.00114529281612809!GO:0035258;steroid hormone receptor binding;0.00119246433636683!GO:0003711;transcription elongation regulator activity;0.00121617410413409!GO:0005905;coated pit;0.00123970993660477!GO:0016564;transcription repressor activity;0.0012483884964356!GO:0001558;regulation of cell growth;0.00126024008201178!GO:0016049;cell growth;0.00127357741166752!GO:0030132;clathrin coat of coated pit;0.00127429812993109!GO:0006733;oxidoreduction coenzyme metabolic process;0.00135097062288824!GO:0031252;leading edge;0.00140441577671525!GO:0048500;signal recognition particle;0.00140728670413797!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00144643516158222!GO:0000287;magnesium ion binding;0.00145149385935935!GO:0008312;7S RNA binding;0.0014684378325677!GO:0008408;3'-5' exonuclease activity;0.00148285504827694!GO:0030663;COPI coated vesicle membrane;0.00160073042858009!GO:0030126;COPI vesicle coat;0.00160073042858009!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00163552831496937!GO:0031982;vesicle;0.00164240242835971!GO:0016272;prefoldin complex;0.00164362157849681!GO:0006007;glucose catabolic process;0.00167230794534837!GO:0005769;early endosome;0.00167562842694765!GO:0048487;beta-tubulin binding;0.00172282027877445!GO:0006497;protein amino acid lipidation;0.00173023861577636!GO:0042770;DNA damage response, signal transduction;0.00175670367678029!GO:0000049;tRNA binding;0.00187371570149667!GO:0008180;signalosome;0.00189311100367106!GO:0006268;DNA unwinding during replication;0.00190767846774947!GO:0043601;nuclear replisome;0.00190767846774947!GO:0030894;replisome;0.00190767846774947!GO:0016044;membrane organization and biogenesis;0.00195726049944374!GO:0005876;spindle microtubule;0.00196768786357541!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00203166340219465!GO:0000428;DNA-directed RNA polymerase complex;0.00203166340219465!GO:0006611;protein export from nucleus;0.00212002304344933!GO:0003746;translation elongation factor activity;0.00237401415339314!GO:0000086;G2/M transition of mitotic cell cycle;0.00244520244092199!GO:0006352;transcription initiation;0.00248188337714692!GO:0000178;exosome (RNase complex);0.00248729260961474!GO:0008632;apoptotic program;0.00249715138429736!GO:0000082;G1/S transition of mitotic cell cycle;0.00257012741725835!GO:0030118;clathrin coat;0.00268951194093522!GO:0004532;exoribonuclease activity;0.00268951194093522!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00268951194093522!GO:0006891;intra-Golgi vesicle-mediated transport;0.00273371033122593!GO:0031410;cytoplasmic vesicle;0.00285982586935291!GO:0000139;Golgi membrane;0.00287242583489723!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00307179445725767!GO:0015002;heme-copper terminal oxidase activity;0.00307179445725767!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00307179445725767!GO:0004129;cytochrome-c oxidase activity;0.00307179445725767!GO:0022890;inorganic cation transmembrane transporter activity;0.00308444068112899!GO:0006144;purine base metabolic process;0.00318700525995205!GO:0051252;regulation of RNA metabolic process;0.00320629237338498!GO:0006595;polyamine metabolic process;0.00324600087342012!GO:0009451;RNA modification;0.00328916897164047!GO:0042393;histone binding;0.00340400173951303!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00340400173951303!GO:0045047;protein targeting to ER;0.00340400173951303!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00344264343754254!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00370711244923643!GO:0006401;RNA catabolic process;0.00418569923918107!GO:0008320;protein transmembrane transporter activity;0.00418569923918107!GO:0016481;negative regulation of transcription;0.00429543946804896!GO:0000096;sulfur amino acid metabolic process;0.00440637383722796!GO:0030137;COPI-coated vesicle;0.00448613773321936!GO:0000228;nuclear chromosome;0.00461673633718136!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0046263920637637!GO:0016125;sterol metabolic process;0.00465811528066297!GO:0051539;4 iron, 4 sulfur cluster binding;0.00491843741625547!GO:0004003;ATP-dependent DNA helicase activity;0.00521448649230408!GO:0008629;induction of apoptosis by intracellular signals;0.00523387827674239!GO:0006519;amino acid and derivative metabolic process;0.00527035774846443!GO:0008022;protein C-terminus binding;0.00531870073395828!GO:0006289;nucleotide-excision repair;0.0053545628548229!GO:0048522;positive regulation of cellular process;0.0057351303360894!GO:0031570;DNA integrity checkpoint;0.00576916876789493!GO:0003714;transcription corepressor activity;0.00596346815559872!GO:0015631;tubulin binding;0.00614152844273871!GO:0005637;nuclear inner membrane;0.00617322366774578!GO:0007243;protein kinase cascade;0.00625961709300904!GO:0016408;C-acyltransferase activity;0.0063206886348216!GO:0003725;double-stranded RNA binding;0.0063206886348216!GO:0042158;lipoprotein biosynthetic process;0.00659719573753358!GO:0006509;membrane protein ectodomain proteolysis;0.00662720037941328!GO:0033619;membrane protein proteolysis;0.00662720037941328!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00664214969840435!GO:0044255;cellular lipid metabolic process;0.00666033217375579!GO:0045792;negative regulation of cell size;0.00667187621252456!GO:0009124;nucleoside monophosphate biosynthetic process;0.00676606918910239!GO:0009123;nucleoside monophosphate metabolic process;0.00676606918910239!GO:0016251;general RNA polymerase II transcription factor activity;0.00688365205168841!GO:0006400;tRNA modification;0.00700269048341091!GO:0006778;porphyrin metabolic process;0.00700680470647715!GO:0033013;tetrapyrrole metabolic process;0.00700680470647715!GO:0046982;protein heterodimerization activity;0.00700680470647715!GO:0030659;cytoplasmic vesicle membrane;0.00701998145752595!GO:0000922;spindle pole;0.00705227147055729!GO:0030658;transport vesicle membrane;0.00706277547631059!GO:0008139;nuclear localization sequence binding;0.00708351148164297!GO:0005758;mitochondrial intermembrane space;0.00729511465130199!GO:0022884;macromolecule transmembrane transporter activity;0.0073114131492024!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0073114131492024!GO:0016407;acetyltransferase activity;0.00732348791997119!GO:0007010;cytoskeleton organization and biogenesis;0.00737842216472663!GO:0046983;protein dimerization activity;0.00748660968498833!GO:0030308;negative regulation of cell growth;0.0077346740120991!GO:0031124;mRNA 3'-end processing;0.00785537465871206!GO:0000339;RNA cap binding;0.00794849015123988!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00795031288606623!GO:0050790;regulation of catalytic activity;0.00795031288606623!GO:0031902;late endosome membrane;0.0082109496967508!GO:0000725;recombinational repair;0.00822357016999491!GO:0000724;double-strand break repair via homologous recombination;0.00822357016999491!GO:0008637;apoptotic mitochondrial changes;0.00850486780702354!GO:0005832;chaperonin-containing T-complex;0.00885782117373419!GO:0040008;regulation of growth;0.00901267750782552!GO:0006402;mRNA catabolic process;0.0091180818006042!GO:0000175;3'-5'-exoribonuclease activity;0.00923410515071802!GO:0043154;negative regulation of caspase activity;0.00923410515071802!GO:0006338;chromatin remodeling;0.0093799502494242!GO:0051338;regulation of transferase activity;0.00947478693327256!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00952537771599855!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00962576497054793!GO:0006066;alcohol metabolic process;0.00976324055811751!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0100544044869595!GO:0043022;ribosome binding;0.0100696359531033!GO:0006979;response to oxidative stress;0.0103017575543498!GO:0030119;AP-type membrane coat adaptor complex;0.0103017575543498!GO:0009119;ribonucleoside metabolic process;0.0103553284097426!GO:0045045;secretory pathway;0.0103766849506881!GO:0004549;tRNA-specific ribonuclease activity;0.0104557185728695!GO:0012506;vesicle membrane;0.0108527600227869!GO:0032259;methylation;0.011231541724724!GO:0043414;biopolymer methylation;0.0112399070672603!GO:0004526;ribonuclease P activity;0.0112780286566675!GO:0043065;positive regulation of apoptosis;0.011571633986998!GO:0030521;androgen receptor signaling pathway;0.0115849278609659!GO:0009303;rRNA transcription;0.0116472050041095!GO:0044438;microbody part;0.0116621653263181!GO:0044439;peroxisomal part;0.0116621653263181!GO:0006807;nitrogen compound metabolic process;0.0116651547849953!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0118306059576694!GO:0008234;cysteine-type peptidase activity;0.0119204658090917!GO:0046966;thyroid hormone receptor binding;0.0119233840978658!GO:0019899;enzyme binding;0.0119233840978658!GO:0030125;clathrin vesicle coat;0.0120907966949044!GO:0030665;clathrin coated vesicle membrane;0.0120907966949044!GO:0006096;glycolysis;0.0121376080452048!GO:0007034;vacuolar transport;0.0122358221989437!GO:0006769;nicotinamide metabolic process;0.0122436369173477!GO:0005774;vacuolar membrane;0.0122878720925504!GO:0030660;Golgi-associated vesicle membrane;0.0123637004821708!GO:0005874;microtubule;0.012372338000991!GO:0008652;amino acid biosynthetic process;0.0128096171745659!GO:0043549;regulation of kinase activity;0.0129493416194358!GO:0000070;mitotic sister chromatid segregation;0.0131474501897873!GO:0007017;microtubule-based process;0.0133340402043568!GO:0030131;clathrin adaptor complex;0.0134302654458441!GO:0050681;androgen receptor binding;0.0135910759728698!GO:0043068;positive regulation of programmed cell death;0.0136119267231953!GO:0004540;ribonuclease activity;0.013681877892335!GO:0016197;endosome transport;0.0137400908194605!GO:0007021;tubulin folding;0.013871059262636!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0138962331433821!GO:0006740;NADPH regeneration;0.0140425020655513!GO:0006098;pentose-phosphate shunt;0.0140425020655513!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.014095362598629!GO:0004523;ribonuclease H activity;0.0141954675829451!GO:0050178;phenylpyruvate tautomerase activity;0.0145104246947703!GO:0009161;ribonucleoside monophosphate metabolic process;0.0145929768341677!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0145929768341677!GO:0005862;muscle thin filament tropomyosin;0.0146892235535507!GO:0000819;sister chromatid segregation;0.0149015540582668!GO:0006378;mRNA polyadenylation;0.0149890251115473!GO:0007050;cell cycle arrest;0.015117971942551!GO:0005869;dynactin complex;0.0152641736791349!GO:0044433;cytoplasmic vesicle part;0.015780505641113!GO:0006779;porphyrin biosynthetic process;0.0159384439370505!GO:0033014;tetrapyrrole biosynthetic process;0.0159384439370505!GO:0051053;negative regulation of DNA metabolic process;0.0159878317947865!GO:0005663;DNA replication factor C complex;0.0162727637233665!GO:0031903;microbody membrane;0.0166713543615213!GO:0005778;peroxisomal membrane;0.0166713543615213!GO:0043624;cellular protein complex disassembly;0.0171542249301776!GO:0009003;signal peptidase activity;0.0171774732643647!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0173902894233103!GO:0006417;regulation of translation;0.0174810931717261!GO:0048146;positive regulation of fibroblast proliferation;0.0180416349350279!GO:0005996;monosaccharide metabolic process;0.0182859729740175!GO:0048144;fibroblast proliferation;0.0185363951410234!GO:0048145;regulation of fibroblast proliferation;0.0185363951410234!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0189917132716113!GO:0010257;NADH dehydrogenase complex assembly;0.0189917132716113!GO:0033108;mitochondrial respiratory chain complex assembly;0.0189917132716113!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0192447737165351!GO:0045039;protein import into mitochondrial inner membrane;0.0192447737165351!GO:0030133;transport vesicle;0.0195983593762047!GO:0046365;monosaccharide catabolic process;0.0198488728190616!GO:0045859;regulation of protein kinase activity;0.0199487745175971!GO:0008538;proteasome activator activity;0.0199487745175971!GO:0019318;hexose metabolic process;0.0200406694549404!GO:0043488;regulation of mRNA stability;0.0201635281202701!GO:0043487;regulation of RNA stability;0.0201635281202701!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0203663897974768!GO:0042168;heme metabolic process;0.0204066769267181!GO:0042364;water-soluble vitamin biosynthetic process;0.0206491486397588!GO:0030508;thiol-disulfide exchange intermediate activity;0.0207418844560471!GO:0009308;amine metabolic process;0.0208370764115542!GO:0006643;membrane lipid metabolic process;0.0210578340648914!GO:0019362;pyridine nucleotide metabolic process;0.0214512976457673!GO:0000726;non-recombinational repair;0.0221118579349845!GO:0031123;RNA 3'-end processing;0.0223790092147894!GO:0043433;negative regulation of transcription factor activity;0.0226006048644583!GO:0016788;hydrolase activity, acting on ester bonds;0.0226742876987884!GO:0046519;sphingoid metabolic process;0.0230659600217097!GO:0006360;transcription from RNA polymerase I promoter;0.0237882302224399!GO:0000077;DNA damage checkpoint;0.0238773725027237!GO:0004576;oligosaccharyl transferase activity;0.0238773725027237!GO:0006354;RNA elongation;0.0241785377994636!GO:0008250;oligosaccharyl transferase complex;0.0241785377994636!GO:0000030;mannosyltransferase activity;0.0241785377994636!GO:0031970;organelle envelope lumen;0.0241939830523471!GO:0008299;isoprenoid biosynthetic process;0.0247050415042863!GO:0044437;vacuolar part;0.0251934670298408!GO:0006213;pyrimidine nucleoside metabolic process;0.0253149730718932!GO:0006730;one-carbon compound metabolic process;0.0255515521074785!GO:0006376;mRNA splice site selection;0.0255515521074785!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255515521074785!GO:0006006;glucose metabolic process;0.0257322885549358!GO:0051059;NF-kappaB binding;0.025750570938256!GO:0003923;GPI-anchor transamidase activity;0.025750570938256!GO:0016255;attachment of GPI anchor to protein;0.025750570938256!GO:0042765;GPI-anchor transamidase complex;0.025750570938256!GO:0006672;ceramide metabolic process;0.0260285414049823!GO:0045926;negative regulation of growth;0.0260689047964281!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0261122404613587!GO:0022406;membrane docking;0.0263122025434804!GO:0048278;vesicle docking;0.0263122025434804!GO:0043189;H4/H2A histone acetyltransferase complex;0.0264230391131959!GO:0008203;cholesterol metabolic process;0.0268407713712267!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0270177934160719!GO:0046164;alcohol catabolic process;0.0272091940386326!GO:0009081;branched chain family amino acid metabolic process;0.0272999395155723!GO:0044454;nuclear chromosome part;0.0275622391238108!GO:0032984;macromolecular complex disassembly;0.0279521792393021!GO:0000152;nuclear ubiquitin ligase complex;0.0279966523347942!GO:0005658;alpha DNA polymerase:primase complex;0.0281503023158775!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0281513196999204!GO:0030134;ER to Golgi transport vesicle;0.0284400498775349!GO:0051716;cellular response to stimulus;0.0291023759683641!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0292231411474126!GO:0031406;carboxylic acid binding;0.0293426223947858!GO:0006644;phospholipid metabolic process;0.0293440062030551!GO:0031529;ruffle organization and biogenesis;0.0294907549764235!GO:0050811;GABA receptor binding;0.0302056910844642!GO:0031326;regulation of cellular biosynthetic process;0.0302065704619454!GO:0004659;prenyltransferase activity;0.0302536450523713!GO:0017166;vinculin binding;0.0306473275701825!GO:0005669;transcription factor TFIID complex;0.0307764864628913!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0308941202858637!GO:0005777;peroxisome;0.0310371815465847!GO:0042579;microbody;0.0310371815465847!GO:0009889;regulation of biosynthetic process;0.0310950133795649!GO:0019320;hexose catabolic process;0.0311874207371751!GO:0004860;protein kinase inhibitor activity;0.0314216640551088!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0316249929923279!GO:0016790;thiolester hydrolase activity;0.0316362497224812!GO:0046128;purine ribonucleoside metabolic process;0.0316558928983256!GO:0042278;purine nucleoside metabolic process;0.0316558928983256!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0321837511413034!GO:0007040;lysosome organization and biogenesis;0.032333598349042!GO:0006596;polyamine biosynthetic process;0.0324032677671842!GO:0015036;disulfide oxidoreductase activity;0.032457468022696!GO:0005732;small nucleolar ribonucleoprotein complex;0.032482392041222!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0329766257025758!GO:0004448;isocitrate dehydrogenase activity;0.0330238068733216!GO:0008017;microtubule binding;0.0333589862813199!GO:0006541;glutamine metabolic process;0.0339224096193421!GO:0008092;cytoskeletal protein binding;0.0339470521299722!GO:0030127;COPII vesicle coat;0.0340016384738012!GO:0012507;ER to Golgi transport vesicle membrane;0.0340016384738012!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0343805553100852!GO:0006739;NADP metabolic process;0.0344587920961234!GO:0007041;lysosomal transport;0.0345286340578786!GO:0035267;NuA4 histone acetyltransferase complex;0.0352704544081189!GO:0005784;translocon complex;0.035443386053256!GO:0045893;positive regulation of transcription, DNA-dependent;0.035443386053256!GO:0019783;small conjugating protein-specific protease activity;0.0354642518604229!GO:0006220;pyrimidine nucleotide metabolic process;0.0354759810825305!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0355370546886881!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0355370546886881!GO:0006904;vesicle docking during exocytosis;0.0360698114008442!GO:0007346;regulation of progression through mitotic cell cycle;0.0361792293299036!GO:0003702;RNA polymerase II transcription factor activity;0.0362087658702108!GO:0031577;spindle checkpoint;0.0363717820037245!GO:0008536;Ran GTPase binding;0.0364001753739013!GO:0046112;nucleobase biosynthetic process;0.0364157856809717!GO:0000910;cytokinesis;0.0370076591159182!GO:0006629;lipid metabolic process;0.0370076591159182!GO:0016417;S-acyltransferase activity;0.0370451972637335!GO:0042769;DNA damage response, detection of DNA damage;0.0372120627296932!GO:0001836;release of cytochrome c from mitochondria;0.0372120627296932!GO:0040029;regulation of gene expression, epigenetic;0.0375888352751645!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0376017129751111!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0383923855804337!GO:0032200;telomere organization and biogenesis;0.0384883265144045!GO:0000723;telomere maintenance;0.0384883265144045!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0385849306505599!GO:0008156;negative regulation of DNA replication;0.0386859350835422!GO:0022411;cellular component disassembly;0.0386859350835422!GO:0006749;glutathione metabolic process;0.0390198037614399!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0393429983371947!GO:0043241;protein complex disassembly;0.0393429983371947!GO:0009225;nucleotide-sugar metabolic process;0.040101810713587!GO:0019206;nucleoside kinase activity;0.0404837399156882!GO:0004536;deoxyribonuclease activity;0.0407640034487226!GO:0006308;DNA catabolic process;0.0410900493338962!GO:0005765;lysosomal membrane;0.0413993765509181!GO:0005971;ribonucleoside-diphosphate reductase complex;0.0419755094428415!GO:0009066;aspartate family amino acid metabolic process;0.0420730339604221!GO:0006518;peptide metabolic process;0.0421678783937267!GO:0004843;ubiquitin-specific protease activity;0.0423609559782873!GO:0031625;ubiquitin protein ligase binding;0.0425362432623409!GO:0009967;positive regulation of signal transduction;0.0425430478972004!GO:0003887;DNA-directed DNA polymerase activity;0.0429329236480988!GO:0007004;telomere maintenance via telomerase;0.0429494338346107!GO:0030503;regulation of cell redox homeostasis;0.0430657863534418!GO:0030032;lamellipodium biogenesis;0.0433767494179437!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0433767494179437!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0433767494179437!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0433767494179437!GO:0031371;ubiquitin conjugating enzyme complex;0.0433798935229056!GO:0003756;protein disulfide isomerase activity;0.0437292365955039!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0437292365955039!GO:0008601;protein phosphatase type 2A regulator activity;0.0439714828221152!GO:0006406;mRNA export from nucleus;0.0454590851098451!GO:0006783;heme biosynthetic process;0.0454590851098451!GO:0016453;C-acetyltransferase activity;0.0460140412730888!GO:0000123;histone acetyltransferase complex;0.0462182815416647!GO:0004674;protein serine/threonine kinase activity;0.046473696447757!GO:0016791;phosphoric monoester hydrolase activity;0.0466360691597994!GO:0008426;protein kinase C inhibitor activity;0.0469183646138109!GO:0030911;TPR domain binding;0.0473786903025953!GO:0030027;lamellipodium;0.0479483793903171!GO:0007033;vacuole organization and biogenesis;0.0479483793903171!GO:0030677;ribonuclease P complex;0.048405344577635!GO:0030036;actin cytoskeleton organization and biogenesis;0.0487538253924855!GO:0030433;ER-associated protein catabolic process;0.0487538253924855!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0487538253924855!GO:0008287;protein serine/threonine phosphatase complex;0.0488877413560584!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0490555572022279!GO:0009396;folic acid and derivative biosynthetic process;0.0490555572022279!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0494345859018101!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0499079455942914
|sample_id=11895
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11895-125E5;search_select_hide=table117:FF:11895-125E5
}}
}}

Latest revision as of 18:27, 4 June 2020

Name:Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
Species:Human (Homo sapiens)
Library ID:CNhs13498
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age56
cell typeunclassifiable
cell lineHep-2
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2b
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005959
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13498 CAGE DRX007789 DRR008661
Accession ID Hg19

Library idBAMCTSS
CNhs13498 DRZ000086 DRZ001471
Accession ID Hg38

Library idBAMCTSS
CNhs13498 DRZ011436 DRZ012821
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.785
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0396
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.201
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0543
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0601
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0778
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.726
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.187
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0413
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.799
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.515
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.478
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.144
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13498

Jaspar motifP-value
MA0002.20.199
MA0003.10.762
MA0004.10.0585
MA0006.10.547
MA0007.10.527
MA0009.10.554
MA0014.10.383
MA0017.10.135
MA0018.20.772
MA0019.10.797
MA0024.16.50421e-8
MA0025.10.027
MA0027.10.844
MA0028.11.87786e-5
MA0029.10.454
MA0030.10.276
MA0031.10.287
MA0035.20.696
MA0038.10.847
MA0039.20.0608
MA0040.10.484
MA0041.10.33
MA0042.10.394
MA0043.10.134
MA0046.10.765
MA0047.20.735
MA0048.10.117
MA0050.10.0726
MA0051.10.794
MA0052.10.0588
MA0055.19.89264e-5
MA0057.10.238
MA0058.10.0103
MA0059.10.00427
MA0060.10.153
MA0061.10.447
MA0062.20.00785
MA0065.20.00567
MA0066.10.475
MA0067.10.496
MA0068.13.20424e-4
MA0069.10.28
MA0070.10.644
MA0071.10.00788
MA0072.10.561
MA0073.10.225
MA0074.10.394
MA0076.15.36283e-5
MA0077.10.9
MA0078.10.322
MA0079.20.339
MA0080.21.27419e-7
MA0081.10.323
MA0083.10.0072
MA0084.10.282
MA0087.10.459
MA0088.10.0337
MA0090.10.00499
MA0091.10.545
MA0092.10.704
MA0093.10.0295
MA0099.20.633
MA0100.10.267
MA0101.10.404
MA0102.20.523
MA0103.10.00887
MA0104.27.68932e-4
MA0105.10.394
MA0106.10.504
MA0107.10.161
MA0108.20.0512
MA0111.10.608
MA0112.20.00493
MA0113.10.779
MA0114.10.0056
MA0115.10.0477
MA0116.10.167
MA0117.10.83
MA0119.10.625
MA0122.10.86
MA0124.10.984
MA0125.10.524
MA0131.10.54
MA0135.10.832
MA0136.10.0018
MA0137.20.0394
MA0138.20.0851
MA0139.10.63
MA0140.10.711
MA0141.17.53259e-4
MA0142.10.862
MA0143.10.171
MA0144.10.433
MA0145.10.63
MA0146.10.182
MA0147.13.52608e-4
MA0148.10.137
MA0149.10.0269
MA0150.10.633
MA0152.10.678
MA0153.10.0212
MA0154.10.779
MA0155.10.445
MA0156.10.14
MA0157.10.262
MA0159.10.071
MA0160.10.00166
MA0162.10.109
MA0163.10.00474
MA0164.10.272
MA0258.10.3
MA0259.10.0404



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13498

Novel motifP-value
10.0301
100.0523
1000.0159
1010.203
1020.968
1030.839
1040.743
1050.258
1060.0473
1070.18
1080.645
1099.27522e-4
110.57
1100.213
1110.359
1120.281
1130.00525
1140.465
1150.999
1160.186
1170.149
1180.0502
1190.305
120.702
1200.0849
1210.499
1220.108
1230.315
1240.833
1250.646
1260.749
1270.123
1287.53661e-4
1290.468
131.14885e-4
1300.554
1310.408
1320.877
1330.0979
1340.805
1350.159
1360.0115
1370.167
1380.462
1390.0911
140.555
1400.461
1410.21
1420.674
1430.249
1440.455
1450.336
1460.863
1470.474
1480.415
1490.455
150.358
1500.726
1510.76
1520.671
1530.796
1540.332
1550.617
1560.105
1570.0842
1580.184
1590.139
160.53
1600.243
1610.383
1620.356
1630.196
1640.00924
1650.298
1660.0362
1670.196
1680.182
1690.132
170.862
180.259
190.98
20.555
200.15
210.194
220.902
230.0216
240.427
250.124
260.645
270.867
280.871
290.012
30.801
300.447
310.678
320.167
330.111
340.237
350.876
360.0534
370.261
380.518
390.991
40.149
400.00541
410.166
420.785
430.77
440.0462
450.277
460.748
470.142
480.244
490.385
50.497
500.842
510.722
520.306
530.171
540.6
550.0531
560.902
570.408
580.912
590.995
60.491
600.528
610.0685
620.559
630.34
640.574
650.611
660.614
670.898
680.596
690.875
70.0168
700.874
710.0137
720.991
730.332
740.175
750.115
760.124
770.337
780.0986
790.649
80.0578
800.0802
810.281
820.247
830.84
840.484
850.0574
860.961
870.0044
880.902
890.645
90.606
900.0618
910.0245
920.116
930.204
940.763
950.0234
960.442
970.928
980.465
990.309



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13498


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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