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(Created page with "{{f5samples |id=FF:10721-110A1 |name=leiomyoblastoma cell line:G-402, biol_rep1 |sample_id=10721 |rna_tube_id=110A1 |rna_box=110 |rna_position=A1 |sample_cell_lot= |s...")
 
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{{f5samples
{{f5samples
|id=FF:10721-110A1
|DRA_sample_Accession=CAGE@SAMD00005185
|name=leiomyoblastoma  cell line:G-402, biol_rep1
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005185
|sample_id=10721
|accession_numbers=CAGE;DRX007914;DRR008786;DRZ000211;DRZ001596;DRZ011561;DRZ012946
|rna_tube_id=110A1
|accession_numbers_RNASeq=RNA-Seq;DRX057137;DRR062896;DRZ007972
|rna_box=110
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|rna_position=A1
|sample_cell_lot=
|sample_cell_catalog=CRL-1440
|sample_company=ATCC
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=9 months
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.05000
|rna_od260/280=2.09000
|sample_cell_type=unclassifiable
|sample_cell_line=G-402
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=leiomyoblastoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=47.09071
|rna_concentration=1.00193
|sample_note=
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
|ancestors_in_disease_facet=DOID:4,DOID:7
|ancestors_in_disease_facet=DOID:4,DOID:7
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192,FF:0100678
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=FF:0100067
|fonse_cell_line=FF:0100067
|fonse_cell_line_closure=FF:0100067
|fonse_cell_line_closure=FF:0100067
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.ctss.bed.gz
|id=FF:10721-110A1
|is_a=EFO:0002091;;FF:0000210;;FF:0100678
|is_obsolete=
|library_id=CNhs11848
|library_id_phase_based=2:CNhs11848
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10721
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10721
|name=leiomyoblastoma cell line:G-402
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=1.00193
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.05
|rna_od260/280=2.09
|rna_position=A1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110A1
|rna_weight_ug=47.09071
|rnaseq_library_id=RDhi10080
|sample_age=9 months
|sample_category=cell lines
|sample_cell_catalog=CRL-1440
|sample_cell_line=G-402
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=leiomyoblastoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41216346570063e-262!GO:0043226;organelle;1.37395608499265e-227!GO:0043229;intracellular organelle;3.23926171391575e-227!GO:0043231;intracellular membrane-bound organelle;1.78181644439658e-222!GO:0043227;membrane-bound organelle;2.10092205869378e-222!GO:0044422;organelle part;4.08823503241265e-178!GO:0044446;intracellular organelle part;1.02199920214442e-176!GO:0005737;cytoplasm;3.27457335356655e-170!GO:0044444;cytoplasmic part;2.65747858834694e-130!GO:0032991;macromolecular complex;1.88424279344877e-117!GO:0030529;ribonucleoprotein complex;6.39663720825887e-100!GO:0005634;nucleus;1.33652055801578e-98!GO:0044237;cellular metabolic process;1.56576900488797e-94!GO:0044238;primary metabolic process;1.36712227492148e-92!GO:0043233;organelle lumen;3.30736281389647e-90!GO:0031974;membrane-enclosed lumen;3.30736281389647e-90!GO:0044428;nuclear part;5.09866357375533e-89!GO:0043170;macromolecule metabolic process;7.09239635002106e-89!GO:0003723;RNA binding;1.04807196319386e-87!GO:0005739;mitochondrion;7.09747250098789e-77!GO:0006396;RNA processing;8.82693393354695e-62!GO:0043234;protein complex;8.80671714189803e-59!GO:0005840;ribosome;3.74622531089447e-58!GO:0005515;protein binding;5.52623650247587e-58!GO:0031981;nuclear lumen;1.30224751869122e-54!GO:0043283;biopolymer metabolic process;2.83062271035494e-53!GO:0006412;translation;4.52480207156147e-53!GO:0044429;mitochondrial part;4.10067028345489e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.40223631885252e-52!GO:0031090;organelle membrane;2.17409962098215e-51!GO:0016043;cellular component organization and biogenesis;1.09786958438487e-50!GO:0003735;structural constituent of ribosome;5.50683209861267e-50!GO:0010467;gene expression;2.43974354174337e-48!GO:0043228;non-membrane-bound organelle;1.64718215066444e-46!GO:0043232;intracellular non-membrane-bound organelle;1.64718215066444e-46!GO:0031967;organelle envelope;1.75347475698528e-46!GO:0016071;mRNA metabolic process;2.71838351335689e-46!GO:0031975;envelope;4.24155661372783e-46!GO:0006259;DNA metabolic process;4.36796646469076e-46!GO:0019538;protein metabolic process;1.81663461811922e-45!GO:0033279;ribosomal subunit;7.865464309738e-43!GO:0044260;cellular macromolecule metabolic process;9.11480583771013e-42!GO:0044267;cellular protein metabolic process;9.6598770562434e-42!GO:0008380;RNA splicing;2.08089962793226e-41!GO:0006996;organelle organization and biogenesis;3.08111652533384e-41!GO:0006397;mRNA processing;5.27977869248303e-40!GO:0044249;cellular biosynthetic process;2.38634643283197e-39!GO:0015031;protein transport;1.92525769807535e-38!GO:0009059;macromolecule biosynthetic process;2.57394113050319e-38!GO:0033036;macromolecule localization;5.85866441539554e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.92682961840585e-37!GO:0046907;intracellular transport;4.99257437112598e-37!GO:0009058;biosynthetic process;6.26124243003242e-37!GO:0005829;cytosol;2.49043844112e-36!GO:0003676;nucleic acid binding;5.04672771311426e-35!GO:0045184;establishment of protein localization;6.37129528989761e-35!GO:0008104;protein localization;7.8034052480451e-34!GO:0065003;macromolecular complex assembly;3.82074927264829e-33!GO:0005740;mitochondrial envelope;2.59316703422363e-32!GO:0005654;nucleoplasm;5.61389441507288e-31!GO:0007049;cell cycle;5.61389441507288e-31!GO:0019866;organelle inner membrane;5.76378063139741e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.00474759888002e-31!GO:0000166;nucleotide binding;9.30672232007507e-31!GO:0031966;mitochondrial membrane;4.52280737673264e-30!GO:0022607;cellular component assembly;2.29977192374983e-29!GO:0005681;spliceosome;4.54808294948368e-29!GO:0005743;mitochondrial inner membrane;1.32926567627536e-28!GO:0006974;response to DNA damage stimulus;1.15366081904709e-27!GO:0006886;intracellular protein transport;2.20076295607449e-27!GO:0005730;nucleolus;5.33368746610245e-26!GO:0051649;establishment of cellular localization;7.98512902027125e-26!GO:0051641;cellular localization;2.47717678743919e-25!GO:0044451;nucleoplasm part;2.48478197961501e-25!GO:0044445;cytosolic part;2.65308418064638e-25!GO:0017111;nucleoside-triphosphatase activity;6.22346718774694e-25!GO:0016462;pyrophosphatase activity;7.25940508323898e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.83504624200286e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;1.36115132424982e-24!GO:0031980;mitochondrial lumen;5.55645550448075e-24!GO:0005759;mitochondrial matrix;5.55645550448075e-24!GO:0005694;chromosome;1.48088092795857e-23!GO:0016070;RNA metabolic process;2.57259978351448e-23!GO:0006281;DNA repair;3.34448130308506e-23!GO:0000278;mitotic cell cycle;4.873018717931e-23!GO:0015934;large ribosomal subunit;7.46271382217596e-23!GO:0022402;cell cycle process;8.74042694858992e-23!GO:0006457;protein folding;1.85794672201295e-22!GO:0051276;chromosome organization and biogenesis;3.76461790138878e-22!GO:0006119;oxidative phosphorylation;8.56076619437709e-22!GO:0044455;mitochondrial membrane part;1.32378924508125e-21!GO:0015935;small ribosomal subunit;3.60269393494762e-21!GO:0032553;ribonucleotide binding;9.08541505466475e-21!GO:0032555;purine ribonucleotide binding;9.08541505466475e-21!GO:0044427;chromosomal part;1.168454550517e-20!GO:0000087;M phase of mitotic cell cycle;3.143456340351e-20!GO:0017076;purine nucleotide binding;3.36241606588287e-20!GO:0022618;protein-RNA complex assembly;3.44844920039556e-20!GO:0016874;ligase activity;4.49575320168527e-20!GO:0006512;ubiquitin cycle;4.8538769519588e-20!GO:0006260;DNA replication;5.14990302465281e-20!GO:0007067;mitosis;6.85765504503586e-20!GO:0012505;endomembrane system;3.30186532091392e-19!GO:0022403;cell cycle phase;8.63621297624076e-19!GO:0016887;ATPase activity;3.39079397439531e-18!GO:0005524;ATP binding;5.01197837869824e-18!GO:0051301;cell division;5.92202235823198e-18!GO:0032559;adenyl ribonucleotide binding;7.76231878920726e-18!GO:0000279;M phase;1.27913505914615e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.52054905642122e-17!GO:0044265;cellular macromolecule catabolic process;1.55245377651733e-17!GO:0009719;response to endogenous stimulus;2.04385290394529e-17!GO:0042254;ribosome biogenesis and assembly;2.64445220720486e-17!GO:0030554;adenyl nucleotide binding;4.03444553254438e-17!GO:0043285;biopolymer catabolic process;4.13520702004365e-17!GO:0006323;DNA packaging;7.46173011159578e-17!GO:0042623;ATPase activity, coupled;7.71300663924283e-17!GO:0031965;nuclear membrane;1.82773215605682e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.50695645695125e-16!GO:0008135;translation factor activity, nucleic acid binding;4.06055273451294e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;4.06055273451294e-16!GO:0000375;RNA splicing, via transesterification reactions;4.06055273451294e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.06055273451294e-16!GO:0005746;mitochondrial respiratory chain;4.29848614220369e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.3645637035087e-16!GO:0005761;mitochondrial ribosome;4.87118064955207e-16!GO:0000313;organellar ribosome;4.87118064955207e-16!GO:0005783;endoplasmic reticulum;4.90440600575336e-16!GO:0009057;macromolecule catabolic process;6.16851811651235e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.08844449425023e-15!GO:0051082;unfolded protein binding;1.52206033580111e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.66161398951874e-15!GO:0003954;NADH dehydrogenase activity;1.66161398951874e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.66161398951874e-15!GO:0044453;nuclear membrane part;1.97771801059428e-15!GO:0019941;modification-dependent protein catabolic process;1.97771801059428e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.97771801059428e-15!GO:0044257;cellular protein catabolic process;2.50969256408991e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.35182984278795e-15!GO:0044248;cellular catabolic process;4.29471239509793e-15!GO:0006605;protein targeting;7.70852789263945e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.93239945872334e-15!GO:0005635;nuclear envelope;1.6872096879021e-14!GO:0044432;endoplasmic reticulum part;1.98699849859796e-14!GO:0006399;tRNA metabolic process;4.2008622596693e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.67741867257431e-14!GO:0051186;cofactor metabolic process;6.33227155989945e-14!GO:0048193;Golgi vesicle transport;6.33535669027381e-14!GO:0016604;nuclear body;6.77789892018806e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.29922856347929e-13!GO:0042773;ATP synthesis coupled electron transport;1.29922856347929e-13!GO:0030163;protein catabolic process;1.37633829563665e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.08116322920106e-13!GO:0045271;respiratory chain complex I;2.08116322920106e-13!GO:0005747;mitochondrial respiratory chain complex I;2.08116322920106e-13!GO:0005643;nuclear pore;3.65083064235103e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.65559003520136e-13!GO:0004386;helicase activity;9.1200000107156e-13!GO:0043412;biopolymer modification;1.09324684694378e-12!GO:0008134;transcription factor binding;1.42693132174356e-12!GO:0003743;translation initiation factor activity;1.57831323915549e-12!GO:0006333;chromatin assembly or disassembly;2.91975437188017e-12!GO:0048770;pigment granule;2.91975437188017e-12!GO:0042470;melanosome;2.91975437188017e-12!GO:0006413;translational initiation;3.51145264727259e-12!GO:0006403;RNA localization;3.72469550147792e-12!GO:0050657;nucleic acid transport;4.04810803219574e-12!GO:0051236;establishment of RNA localization;4.04810803219574e-12!GO:0050658;RNA transport;4.04810803219574e-12!GO:0016568;chromatin modification;6.68605516477116e-12!GO:0008026;ATP-dependent helicase activity;7.44835581476132e-12!GO:0006364;rRNA processing;1.03615596620399e-11!GO:0015630;microtubule cytoskeleton;1.23577111512822e-11!GO:0065002;intracellular protein transport across a membrane;1.55865417140395e-11!GO:0016607;nuclear speck;1.82431921189392e-11!GO:0006446;regulation of translational initiation;2.19378537672186e-11!GO:0000785;chromatin;2.34168765999564e-11!GO:0046930;pore complex;2.72002067923406e-11!GO:0005794;Golgi apparatus;2.90726023273718e-11!GO:0016072;rRNA metabolic process;2.92894021789249e-11!GO:0065004;protein-DNA complex assembly;3.26067894145038e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.99054504055159e-11!GO:0006261;DNA-dependent DNA replication;9.55005304899166e-11!GO:0006913;nucleocytoplasmic transport;9.69763653507394e-11!GO:0000074;regulation of progression through cell cycle;1.19929709191321e-10!GO:0051726;regulation of cell cycle;1.30739091722238e-10!GO:0006464;protein modification process;1.74906727287098e-10!GO:0006732;coenzyme metabolic process;1.94330162545886e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.17124355793323e-10!GO:0008565;protein transporter activity;2.42537203778158e-10!GO:0051169;nuclear transport;2.47673232079952e-10!GO:0016192;vesicle-mediated transport;2.51720238503037e-10!GO:0009259;ribonucleotide metabolic process;2.60478492624123e-10!GO:0006163;purine nucleotide metabolic process;2.89056686042311e-10!GO:0051028;mRNA transport;3.31928711142019e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.86008711964247e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.86008711964247e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.86008711964247e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.75177106494278e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.81147379213381e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.15221181833422e-09!GO:0006164;purine nucleotide biosynthetic process;1.20956746690293e-09!GO:0008639;small protein conjugating enzyme activity;1.21874816415726e-09!GO:0043038;amino acid activation;2.0256021397474e-09!GO:0006418;tRNA aminoacylation for protein translation;2.0256021397474e-09!GO:0043039;tRNA aminoacylation;2.0256021397474e-09!GO:0003697;single-stranded DNA binding;2.10506730021508e-09!GO:0004842;ubiquitin-protein ligase activity;2.49260260476532e-09!GO:0000775;chromosome, pericentric region;2.66635372635514e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.72232660219981e-09!GO:0005789;endoplasmic reticulum membrane;2.74973049513633e-09!GO:0009056;catabolic process;2.79510745858097e-09!GO:0009260;ribonucleotide biosynthetic process;2.90049001635324e-09!GO:0009150;purine ribonucleotide metabolic process;3.15490433180317e-09!GO:0019787;small conjugating protein ligase activity;4.11054103154666e-09!GO:0043566;structure-specific DNA binding;7.24611235649074e-09!GO:0043687;post-translational protein modification;7.29708540145752e-09!GO:0016881;acid-amino acid ligase activity;1.22450024470227e-08!GO:0005819;spindle;1.33441708251605e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.35694497090871e-08!GO:0017038;protein import;1.52826248227181e-08!GO:0009055;electron carrier activity;1.56350426836341e-08!GO:0003712;transcription cofactor activity;1.64813620537897e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.7285166596224e-08!GO:0031497;chromatin assembly;2.0567898160489e-08!GO:0016779;nucleotidyltransferase activity;2.3494076815056e-08!GO:0005788;endoplasmic reticulum lumen;2.8351144686173e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.26985712451628e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.62757520981352e-08!GO:0009060;aerobic respiration;3.80775454314931e-08!GO:0006334;nucleosome assembly;7.40718555439962e-08!GO:0007005;mitochondrion organization and biogenesis;7.66710973548919e-08!GO:0005768;endosome;7.79436159683703e-08!GO:0000245;spliceosome assembly;8.11611761579279e-08!GO:0005813;centrosome;8.97560148575088e-08!GO:0006461;protein complex assembly;9.07528477326246e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.09355684657753e-08!GO:0006366;transcription from RNA polymerase II promoter;9.72066413316828e-08!GO:0009141;nucleoside triphosphate metabolic process;9.98506669725568e-08!GO:0019829;cation-transporting ATPase activity;1.05715322450234e-07!GO:0005815;microtubule organizing center;1.1241677798971e-07!GO:0005793;ER-Golgi intermediate compartment;1.1863619172932e-07!GO:0051188;cofactor biosynthetic process;1.26740462454849e-07!GO:0015986;ATP synthesis coupled proton transport;1.33019227586896e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.33019227586896e-07!GO:0016787;hydrolase activity;1.3739626846607e-07!GO:0043623;cellular protein complex assembly;1.54168527869108e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.63479110230202e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63479110230202e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.63948967702019e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.73901118752999e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.73901118752999e-07!GO:0016740;transferase activity;2.44542777652968e-07!GO:0003899;DNA-directed RNA polymerase activity;2.93058498272558e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.29510376183523e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.29510376183523e-07!GO:0000151;ubiquitin ligase complex;3.72639518178797e-07!GO:0045259;proton-transporting ATP synthase complex;3.85265278290002e-07!GO:0007051;spindle organization and biogenesis;4.45284249618172e-07!GO:0005667;transcription factor complex;4.49231765773782e-07!GO:0000075;cell cycle checkpoint;5.08495683306075e-07!GO:0045333;cellular respiration;5.77660461990749e-07!GO:0009117;nucleotide metabolic process;5.9553110487473e-07!GO:0046034;ATP metabolic process;6.11055702701683e-07!GO:0032446;protein modification by small protein conjugation;7.46992833263179e-07!GO:0012501;programmed cell death;8.94310527568055e-07!GO:0006754;ATP biosynthetic process;9.06640927196385e-07!GO:0006753;nucleoside phosphate metabolic process;9.06640927196385e-07!GO:0006915;apoptosis;1.11055363580049e-06!GO:0044431;Golgi apparatus part;1.16425233589527e-06!GO:0016567;protein ubiquitination;1.89925927463935e-06!GO:0030120;vesicle coat;1.9519444855084e-06!GO:0030662;coated vesicle membrane;1.9519444855084e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.1727776111318e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.17694499441359e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.31532787981907e-06!GO:0008094;DNA-dependent ATPase activity;2.42664406975439e-06!GO:0016859;cis-trans isomerase activity;2.60114048029843e-06!GO:0006099;tricarboxylic acid cycle;3.84142207548635e-06!GO:0046356;acetyl-CoA catabolic process;3.84142207548635e-06!GO:0005762;mitochondrial large ribosomal subunit;4.20958215195144e-06!GO:0000315;organellar large ribosomal subunit;4.20958215195144e-06!GO:0005798;Golgi-associated vesicle;4.47587530101067e-06!GO:0006752;group transfer coenzyme metabolic process;4.47587530101067e-06!GO:0003724;RNA helicase activity;4.70703388061075e-06!GO:0048475;coated membrane;5.38043426450057e-06!GO:0030117;membrane coat;5.38043426450057e-06!GO:0006084;acetyl-CoA metabolic process;6.7503170235272e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.78033670988226e-06!GO:0044452;nucleolar part;7.26167142287461e-06!GO:0008219;cell death;7.4328756908932e-06!GO:0016265;death;7.4328756908932e-06!GO:0051427;hormone receptor binding;7.9668580409217e-06!GO:0008033;tRNA processing;7.98312486570019e-06!GO:0044440;endosomal part;8.17710417647511e-06!GO:0010008;endosome membrane;8.17710417647511e-06!GO:0005657;replication fork;8.32822631913279e-06!GO:0009108;coenzyme biosynthetic process;8.80238574068741e-06!GO:0051329;interphase of mitotic cell cycle;9.68544381343006e-06!GO:0006613;cotranslational protein targeting to membrane;1.08397130219317e-05!GO:0006302;double-strand break repair;1.09921953338299e-05!GO:0051187;cofactor catabolic process;1.1411091204859e-05!GO:0003684;damaged DNA binding;1.19536806211554e-05!GO:0003682;chromatin binding;1.25407495797004e-05!GO:0035257;nuclear hormone receptor binding;1.67095561823761e-05!GO:0051052;regulation of DNA metabolic process;1.8071306989788e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.0991007288925e-05!GO:0008168;methyltransferase activity;2.1542490575962e-05!GO:0006606;protein import into nucleus;2.24523696989032e-05!GO:0003924;GTPase activity;2.33410566871114e-05!GO:0031324;negative regulation of cellular metabolic process;2.43008380471832e-05!GO:0051170;nuclear import;2.43294897463368e-05!GO:0009109;coenzyme catabolic process;2.59266529556573e-05!GO:0000786;nucleosome;3.05338659729883e-05!GO:0000314;organellar small ribosomal subunit;3.05338659729883e-05!GO:0005763;mitochondrial small ribosomal subunit;3.05338659729883e-05!GO:0003729;mRNA binding;3.61595371264205e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.72215686788728e-05!GO:0015399;primary active transmembrane transporter activity;3.72215686788728e-05!GO:0005525;GTP binding;3.79849369971779e-05!GO:0043021;ribonucleoprotein binding;4.30533632821163e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.35115469759454e-05!GO:0016853;isomerase activity;4.46660029395808e-05!GO:0005770;late endosome;4.58492494718029e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.08239162322181e-05!GO:0000776;kinetochore;5.15046734079583e-05!GO:0051168;nuclear export;5.17445106084979e-05!GO:0005874;microtubule;5.72397746930624e-05!GO:0051789;response to protein stimulus;6.04935892482575e-05!GO:0006986;response to unfolded protein;6.04935892482575e-05!GO:0051325;interphase;6.51994060601802e-05!GO:0000139;Golgi membrane;6.57658547628014e-05!GO:0006383;transcription from RNA polymerase III promoter;8.06779826997091e-05!GO:0008654;phospholipid biosynthetic process;8.22974925291439e-05!GO:0051246;regulation of protein metabolic process;8.47538502001427e-05!GO:0000059;protein import into nucleus, docking;8.51504972488626e-05!GO:0048523;negative regulation of cellular process;9.1962696394749e-05!GO:0016363;nuclear matrix;9.45317946962078e-05!GO:0006839;mitochondrial transport;0.000102041156606936!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000103479915832509!GO:0045454;cell redox homeostasis;0.000108878033753057!GO:0007017;microtubule-based process;0.000115354161777597!GO:0045786;negative regulation of progression through cell cycle;0.000115354161777597!GO:0003713;transcription coactivator activity;0.000120688634691965!GO:0016491;oxidoreductase activity;0.000120688634691965!GO:0006626;protein targeting to mitochondrion;0.000120688634691965!GO:0016563;transcription activator activity;0.000123046215921996!GO:0006352;transcription initiation;0.000136076183420471!GO:0006310;DNA recombination;0.00014064521613703!GO:0050794;regulation of cellular process;0.000143675493333314!GO:0009165;nucleotide biosynthetic process;0.00014795710427844!GO:0003678;DNA helicase activity;0.000149804840583475!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000152939033181735!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000154211803130439!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000171278862145281!GO:0006275;regulation of DNA replication;0.000179431341846565!GO:0004298;threonine endopeptidase activity;0.000192980203917775!GO:0005048;signal sequence binding;0.000206660050160776!GO:0006402;mRNA catabolic process;0.000216024863643127!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00022659337548155!GO:0009892;negative regulation of metabolic process;0.000234774992016174!GO:0008186;RNA-dependent ATPase activity;0.0002547648201852!GO:0006338;chromatin remodeling;0.000255769610447937!GO:0006414;translational elongation;0.000265607711721232!GO:0030880;RNA polymerase complex;0.000274664310012814!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000290132913027398!GO:0043492;ATPase activity, coupled to movement of substances;0.000333575451268991!GO:0019222;regulation of metabolic process;0.00033736092592281!GO:0007052;mitotic spindle organization and biogenesis;0.00033736092592281!GO:0006401;RNA catabolic process;0.000344080725942211!GO:0031124;mRNA 3'-end processing;0.000361152550372266!GO:0015980;energy derivation by oxidation of organic compounds;0.000397354541490371!GO:0007088;regulation of mitosis;0.000403173755452864!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000426630015131092!GO:0043681;protein import into mitochondrion;0.00043054834816437!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000434372905147001!GO:0008250;oligosaccharyl transferase complex;0.000435780124486414!GO:0004576;oligosaccharyl transferase activity;0.000451790532891994!GO:0003690;double-stranded DNA binding;0.000456601502655972!GO:0007059;chromosome segregation;0.000474883383253562!GO:0032561;guanyl ribonucleotide binding;0.000495889818518144!GO:0019001;guanyl nucleotide binding;0.000495889818518144!GO:0006091;generation of precursor metabolites and energy;0.000510474040758548!GO:0031072;heat shock protein binding;0.000520456344316088!GO:0032508;DNA duplex unwinding;0.000549969130742975!GO:0032392;DNA geometric change;0.000549969130742975!GO:0051252;regulation of RNA metabolic process;0.000560204351705922!GO:0043069;negative regulation of programmed cell death;0.000570464604233068!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000599403831247896!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000601414104077601!GO:0030658;transport vesicle membrane;0.000633266595253029!GO:0005885;Arp2/3 protein complex;0.000656342400301532!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000673955028843093!GO:0000428;DNA-directed RNA polymerase complex;0.000673955028843093!GO:0004004;ATP-dependent RNA helicase activity;0.000697770050258451!GO:0006612;protein targeting to membrane;0.000707095241250633!GO:0043066;negative regulation of apoptosis;0.000709810827530696!GO:0007093;mitotic cell cycle checkpoint;0.000713663525988835!GO:0032259;methylation;0.000728024770257744!GO:0007010;cytoskeleton organization and biogenesis;0.000739454102025939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000741549418139114!GO:0003714;transcription corepressor activity;0.000743872220991634!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000745893494906557!GO:0048519;negative regulation of biological process;0.000806087032924167!GO:0006793;phosphorus metabolic process;0.000824057541989768!GO:0006796;phosphate metabolic process;0.000824057541989768!GO:0019843;rRNA binding;0.000856737251205479!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000869404669191415!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000869404669191415!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000869404669191415!GO:0005769;early endosome;0.000920376105046521!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000926956036276368!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000926956036276368!GO:0016564;transcription repressor activity;0.00094523141474952!GO:0043414;biopolymer methylation;0.000947181578145911!GO:0043624;cellular protein complex disassembly;0.0010030979685969!GO:0042981;regulation of apoptosis;0.00101938855230874!GO:0018196;peptidyl-asparagine modification;0.00102055202074092!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102055202074092!GO:0031968;organelle outer membrane;0.00102798326438116!GO:0043067;regulation of programmed cell death;0.00111157136580274!GO:0000082;G1/S transition of mitotic cell cycle;0.00116926760615051!GO:0005684;U2-dependent spliceosome;0.00117136244080598!GO:0031988;membrane-bound vesicle;0.00117599475967583!GO:0006284;base-excision repair;0.00118279529623728!GO:0016023;cytoplasmic membrane-bound vesicle;0.00127064281337657!GO:0019867;outer membrane;0.00127365149724154!GO:0016251;general RNA polymerase II transcription factor activity;0.0014200276220367!GO:0046474;glycerophospholipid biosynthetic process;0.00147476588650605!GO:0048471;perinuclear region of cytoplasm;0.00151751934164934!GO:0043488;regulation of mRNA stability;0.00154728217101287!GO:0043487;regulation of RNA stability;0.00154728217101287!GO:0006268;DNA unwinding during replication;0.00163863752180536!GO:0005876;spindle microtubule;0.00163863752180536!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00175048051298475!GO:0016310;phosphorylation;0.00175048051298475!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00178223503647358!GO:0048500;signal recognition particle;0.00179963045843463!GO:0030660;Golgi-associated vesicle membrane;0.00180614446314009!GO:0033116;ER-Golgi intermediate compartment membrane;0.0018097321992183!GO:0006611;protein export from nucleus;0.00182477836025981!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00184216215090911!GO:0031123;RNA 3'-end processing;0.00185816796760649!GO:0006405;RNA export from nucleus;0.00208441951882205!GO:0046483;heterocycle metabolic process;0.00213807073545424!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00224781969130778!GO:0005637;nuclear inner membrane;0.0022570048698292!GO:0009451;RNA modification;0.00228135903619932!GO:0000922;spindle pole;0.00228135903619932!GO:0000049;tRNA binding;0.00230473819533459!GO:0007006;mitochondrial membrane organization and biogenesis;0.00230921081483405!GO:0030134;ER to Golgi transport vesicle;0.00236425103199759!GO:0004518;nuclease activity;0.00249939300232838!GO:0006289;nucleotide-excision repair;0.00250097919541368!GO:0032984;macromolecular complex disassembly;0.00258291244872525!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00264937987162816!GO:0030867;rough endoplasmic reticulum membrane;0.00266389133079199!GO:0051920;peroxiredoxin activity;0.00267955205180446!GO:0005741;mitochondrial outer membrane;0.00271125516097692!GO:0015631;tubulin binding;0.00276149345587105!GO:0016197;endosome transport;0.00289892064116955!GO:0003711;transcription elongation regulator activity;0.00290240623582964!GO:0008312;7S RNA binding;0.00310265533121486!GO:0004527;exonuclease activity;0.00314381221390336!GO:0046489;phosphoinositide biosynthetic process;0.00322255002819463!GO:0006916;anti-apoptosis;0.00326829104555193!GO:0016407;acetyltransferase activity;0.00329034144025012!GO:0045045;secretory pathway;0.00331315952031515!GO:0043241;protein complex disassembly;0.0033188149645856!GO:0009303;rRNA transcription;0.00341124869011444!GO:0006497;protein amino acid lipidation;0.00365758166165942!GO:0051087;chaperone binding;0.00375789706025879!GO:0006378;mRNA polyadenylation;0.00383633551718763!GO:0008139;nuclear localization sequence binding;0.00393987352819743!GO:0016481;negative regulation of transcription;0.004293707608612!GO:0031570;DNA integrity checkpoint;0.00436073913467208!GO:0005773;vacuole;0.00467386497380588!GO:0006144;purine base metabolic process;0.00472712602730169!GO:0031252;leading edge;0.00477345990929607!GO:0042393;histone binding;0.00484734760264808!GO:0006270;DNA replication initiation;0.00497425995596084!GO:0000725;recombinational repair;0.00502381468160593!GO:0000724;double-strand break repair via homologous recombination;0.00502381468160593!GO:0043284;biopolymer biosynthetic process;0.00502558811122539!GO:0030133;transport vesicle;0.00507486349397254!GO:0032200;telomere organization and biogenesis;0.00513209927042824!GO:0000723;telomere maintenance;0.00513209927042824!GO:0031982;vesicle;0.00513335588199636!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00513335588199636!GO:0045047;protein targeting to ER;0.00513335588199636!GO:0008276;protein methyltransferase activity;0.0051522324382769!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00527316839341459!GO:0040029;regulation of gene expression, epigenetic;0.00527666366563416!GO:0030127;COPII vesicle coat;0.00532692347585195!GO:0012507;ER to Golgi transport vesicle membrane;0.00532692347585195!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00534765477429255!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00561583628822864!GO:0000339;RNA cap binding;0.00569814211912926!GO:0005595;collagen type XII;0.0057105906044298!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00587255854828748!GO:0031323;regulation of cellular metabolic process;0.00587946631919469!GO:0005669;transcription factor TFIID complex;0.00589993637901476!GO:0009116;nucleoside metabolic process;0.00620692894424975!GO:0019899;enzyme binding;0.00623129216923058!GO:0051053;negative regulation of DNA metabolic process;0.00664562151910788!GO:0006730;one-carbon compound metabolic process;0.00668818483991116!GO:0031410;cytoplasmic vesicle;0.00674104533183267!GO:0016584;nucleosome positioning;0.00723087848644162!GO:0042770;DNA damage response, signal transduction;0.00727243734532531!GO:0000209;protein polyubiquitination;0.0073312103158888!GO:0050789;regulation of biological process;0.00747783949714729!GO:0006595;polyamine metabolic process;0.00755284907518373!GO:0006350;transcription;0.00757483233524458!GO:0004003;ATP-dependent DNA helicase activity;0.00760636063272419!GO:0035258;steroid hormone receptor binding;0.00760636063272419!GO:0017166;vinculin binding;0.00836671959772023!GO:0005875;microtubule associated complex;0.00855011835770962!GO:0006778;porphyrin metabolic process;0.00859120494122488!GO:0033013;tetrapyrrole metabolic process;0.00859120494122488!GO:0006892;post-Golgi vesicle-mediated transport;0.00865265011776681!GO:0000070;mitotic sister chromatid segregation;0.0088563588211968!GO:0042158;lipoprotein biosynthetic process;0.00901407016807257!GO:0046966;thyroid hormone receptor binding;0.00906241819608894!GO:0000819;sister chromatid segregation;0.0091872238132083!GO:0046519;sphingoid metabolic process;0.00924055554566541!GO:0008022;protein C-terminus binding;0.00931797230327534!GO:0016272;prefoldin complex;0.00933634574114954!GO:0005832;chaperonin-containing T-complex;0.00980365582161388!GO:0005905;coated pit;0.0102611651459104!GO:0008180;signalosome;0.0104416746449072!GO:0046467;membrane lipid biosynthetic process;0.0104440938022947!GO:0000910;cytokinesis;0.0108028144126197!GO:0019752;carboxylic acid metabolic process;0.0116520962478995!GO:0043022;ribosome binding;0.0117118145312147!GO:0006082;organic acid metabolic process;0.0117118145312147!GO:0007050;cell cycle arrest;0.0117704982257059!GO:0000323;lytic vacuole;0.0119425594201858!GO:0005764;lysosome;0.0119425594201858!GO:0005758;mitochondrial intermembrane space;0.0119464704612851!GO:0022890;inorganic cation transmembrane transporter activity;0.0121241209390715!GO:0030118;clathrin coat;0.0131903564412969!GO:0008017;microtubule binding;0.0133874284722142!GO:0000152;nuclear ubiquitin ligase complex;0.0136186129235248!GO:0000077;DNA damage checkpoint;0.0136186129235248!GO:0030663;COPI coated vesicle membrane;0.0136738932007865!GO:0030126;COPI vesicle coat;0.0136738932007865!GO:0030521;androgen receptor signaling pathway;0.0139424850858321!GO:0000781;chromosome, telomeric region;0.0142134151666493!GO:0006400;tRNA modification;0.0142797275939112!GO:0051540;metal cluster binding;0.0142797275939112!GO:0051536;iron-sulfur cluster binding;0.0142797275939112!GO:0008213;protein amino acid alkylation;0.0143586065652696!GO:0006479;protein amino acid methylation;0.0143586065652696!GO:0006505;GPI anchor metabolic process;0.014423076133064!GO:0050662;coenzyme binding;0.0147875996168912!GO:0030137;COPI-coated vesicle;0.014868357813491!GO:0005862;muscle thin filament tropomyosin;0.0153629057489196!GO:0044262;cellular carbohydrate metabolic process;0.0154890140374568!GO:0006506;GPI anchor biosynthetic process;0.0154898122916871!GO:0030176;integral to endoplasmic reticulum membrane;0.0155842783467881!GO:0006672;ceramide metabolic process;0.0155842783467881!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0157361036332657!GO:0015002;heme-copper terminal oxidase activity;0.0157361036332657!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0157361036332657!GO:0004129;cytochrome-c oxidase activity;0.0157361036332657!GO:0006818;hydrogen transport;0.0157910306275872!GO:0051098;regulation of binding;0.0162081664831602!GO:0000792;heterochromatin;0.0162081664831602!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0162081664831602!GO:0030496;midbody;0.0162207827140911!GO:0000178;exosome (RNase complex);0.0164340790009017!GO:0030132;clathrin coat of coated pit;0.0165318174579261!GO:0015992;proton transport;0.0166856142876897!GO:0050178;phenylpyruvate tautomerase activity;0.0167797491047971!GO:0009112;nucleobase metabolic process;0.016843336555723!GO:0009124;nucleoside monophosphate biosynthetic process;0.016843336555723!GO:0009123;nucleoside monophosphate metabolic process;0.016843336555723!GO:0046128;purine ribonucleoside metabolic process;0.0171205207813941!GO:0042278;purine nucleoside metabolic process;0.0171205207813941!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0171708852177506!GO:0043596;nuclear replication fork;0.0171786883515272!GO:0042168;heme metabolic process;0.0171970727984819!GO:0004674;protein serine/threonine kinase activity;0.0172873292615383!GO:0006891;intra-Golgi vesicle-mediated transport;0.0174963420621768!GO:0003746;translation elongation factor activity;0.0178219937063907!GO:0006740;NADPH regeneration;0.0182108547954308!GO:0006098;pentose-phosphate shunt;0.0182108547954308!GO:0008156;negative regulation of DNA replication;0.0185571496706435!GO:0051716;cellular response to stimulus;0.0186969680104903!GO:0016790;thiolester hydrolase activity;0.0187059832189626!GO:0006360;transcription from RNA polymerase I promoter;0.0190158484584742!GO:0006376;mRNA splice site selection;0.0190158484584742!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190158484584742!GO:0000123;histone acetyltransferase complex;0.0191708658437597!GO:0008361;regulation of cell size;0.0192628910561222!GO:0031371;ubiquitin conjugating enzyme complex;0.0195236110527125!GO:0006220;pyrimidine nucleotide metabolic process;0.0198694749165741!GO:0000096;sulfur amino acid metabolic process;0.0200425947408009!GO:0043189;H4/H2A histone acetyltransferase complex;0.0200987494887328!GO:0003756;protein disulfide isomerase activity;0.0202619651965966!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0202619651965966!GO:0031902;late endosome membrane;0.0205471102263884!GO:0009083;branched chain family amino acid catabolic process;0.0205584637592586!GO:0047485;protein N-terminus binding;0.0206750125578097!GO:0006779;porphyrin biosynthetic process;0.0207336532879712!GO:0033014;tetrapyrrole biosynthetic process;0.0207336532879712!GO:0022411;cellular component disassembly;0.0207983469784716!GO:0016044;membrane organization and biogenesis;0.0208451349356166!GO:0042769;DNA damage response, detection of DNA damage;0.0213181426580959!GO:0005791;rough endoplasmic reticulum;0.0214789461318419!GO:0043631;RNA polyadenylation;0.0216673065676299!GO:0008408;3'-5' exonuclease activity;0.0217867539216422!GO:0008632;apoptotic program;0.0222060058800471!GO:0019783;small conjugating protein-specific protease activity;0.0223635493459138!GO:0035267;NuA4 histone acetyltransferase complex;0.0228570062432163!GO:0000287;magnesium ion binding;0.0229143390771712!GO:0016585;chromatin remodeling complex;0.0232668043750731!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0232668043750731!GO:0008415;acyltransferase activity;0.0234127690135836!GO:0031970;organelle envelope lumen;0.0238749829848018!GO:0030518;steroid hormone receptor signaling pathway;0.0241393449825373!GO:0004532;exoribonuclease activity;0.0247490715417558!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0247490715417558!GO:0051656;establishment of organelle localization;0.0247891420785057!GO:0003887;DNA-directed DNA polymerase activity;0.0248825684435194!GO:0000228;nuclear chromosome;0.0258762444475332!GO:0003702;RNA polymerase II transcription factor activity;0.0261507662306563!GO:0005732;small nucleolar ribonucleoprotein complex;0.0263460862620063!GO:0008538;proteasome activator activity;0.0265897176197161!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0266318554306728!GO:0004843;ubiquitin-specific protease activity;0.0269822248354085!GO:0006520;amino acid metabolic process;0.0274566779156394!GO:0008536;Ran GTPase binding;0.0275234213773!GO:0008601;protein phosphatase type 2A regulator activity;0.027648884800011!GO:0007004;telomere maintenance via telomerase;0.0277048495164938!GO:0031628;opioid receptor binding;0.0280846241630555!GO:0031852;mu-type opioid receptor binding;0.0280846241630555!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0281624326828031!GO:0006007;glucose catabolic process;0.0281831448704742!GO:0005881;cytoplasmic microtubule;0.0286238886499432!GO:0051539;4 iron, 4 sulfur cluster binding;0.0288482290807715!GO:0030911;TPR domain binding;0.0293319764155307!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0293319764155307!GO:0031577;spindle checkpoint;0.0300548136519188!GO:0051287;NAD binding;0.0305756881424604!GO:0030125;clathrin vesicle coat;0.0305756881424604!GO:0030665;clathrin coated vesicle membrane;0.0305756881424604!GO:0005869;dynactin complex;0.0310253737145338!GO:0016569;covalent chromatin modification;0.0314512767166311!GO:0030508;thiol-disulfide exchange intermediate activity;0.032172132068895!GO:0042054;histone methyltransferase activity;0.0321790511950503!GO:0045892;negative regulation of transcription, DNA-dependent;0.0324211743790359!GO:0042802;identical protein binding;0.0328015818886755!GO:0006301;postreplication repair;0.0330422924272468!GO:0048487;beta-tubulin binding;0.0334115455023386!GO:0005784;translocon complex;0.0335193770243527!GO:0009161;ribonucleoside monophosphate metabolic process;0.0337694109487753!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0337694109487753!GO:0000726;non-recombinational repair;0.0337995802484102!GO:0031625;ubiquitin protein ligase binding;0.0339282191073477!GO:0006337;nucleosome disassembly;0.0339282191073477!GO:0031498;chromatin disassembly;0.0339282191073477!GO:0016049;cell growth;0.0343202348326372!GO:0030119;AP-type membrane coat adaptor complex;0.0349014493821352!GO:0000159;protein phosphatase type 2A complex;0.0355956188618141!GO:0007033;vacuole organization and biogenesis;0.0357954975356623!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0368866264798709!GO:0048037;cofactor binding;0.0369792902620948!GO:0019206;nucleoside kinase activity;0.037352111887968!GO:0005663;DNA replication factor C complex;0.0381251727111306!GO:0007040;lysosome organization and biogenesis;0.0389781418138247!GO:0016408;C-acyltransferase activity;0.0392996079507488!GO:0016581;NuRD complex;0.0401360192529619!GO:0008143;poly(A) binding;0.040303537625982!GO:0004221;ubiquitin thiolesterase activity;0.0404897512965226!GO:0030140;trans-Golgi network transport vesicle;0.0404897512965226!GO:0044450;microtubule organizing center part;0.0408568316102167!GO:0006783;heme biosynthetic process;0.0408568316102167!GO:0003725;double-stranded RNA binding;0.0410673436611168!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0413104353549169!GO:0006650;glycerophospholipid metabolic process;0.0413769444338387!GO:0005519;cytoskeletal regulatory protein binding;0.0413891478321062!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0414409722652965!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0414409722652965!GO:0016746;transferase activity, transferring acyl groups;0.0414667615723521!GO:0051640;organelle localization;0.0414965720742726!GO:0008287;protein serine/threonine phosphatase complex;0.0417502608367852!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0420182213927551!GO:0032153;cell division site;0.0420438199253763!GO:0032155;cell division site part;0.0420438199253763!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0420438199253763!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0420438199253763!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0421637391588523!GO:0045603;positive regulation of endothelial cell differentiation;0.0427411214310931!GO:0001832;blastocyst growth;0.0429990379678932!GO:0065009;regulation of a molecular function;0.0431435304384147!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.044017173262634!GO:0032940;secretion by cell;0.044017173262634!GO:0004239;methionyl aminopeptidase activity;0.0452139259174184!GO:0030384;phosphoinositide metabolic process;0.0452293413095855!GO:0046426;negative regulation of JAK-STAT cascade;0.0455439588717971!GO:0044438;microbody part;0.0455963810596072!GO:0044439;peroxisomal part;0.0455963810596072!GO:0009113;purine base biosynthetic process;0.0462534676782752!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0463024465660374!GO:0010257;NADH dehydrogenase complex assembly;0.0463024465660374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0463024465660374!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0464976034660046!GO:0030131;clathrin adaptor complex;0.0465984387970382!GO:0006278;RNA-dependent DNA replication;0.0465984387970382!GO:0004523;ribonuclease H activity;0.0465984387970382!GO:0009066;aspartate family amino acid metabolic process;0.0472468256407536!GO:0016615;malate dehydrogenase activity;0.0481763340112374!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0485823205755698!GO:0006596;polyamine biosynthetic process;0.0486306231936203!GO:0006417;regulation of translation;0.0490214034422194!GO:0022406;membrane docking;0.0490214034422194!GO:0048278;vesicle docking;0.0490214034422194!GO:0010468;regulation of gene expression;0.0496679568490778
|sample_id=10721
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10721-110A1;search_select_hide=table117:FF:10721-110A1
}}
}}

Latest revision as of 15:01, 3 June 2020

Name:leiomyoblastoma cell line:G-402
Species:Human (Homo sapiens)
Library ID:CNhs11848
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexfemale
age9 months
cell typeunclassifiable
cell lineG-402
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005185
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11848 CAGE DRX007914 DRR008786
Accession ID Hg19

Library idBAMCTSS
CNhs11848 DRZ000211 DRZ001596
Accession ID Hg38

Library idBAMCTSS
CNhs11848 DRZ011561 DRZ012946
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005185
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10080 RNA-Seq DRX057137 DRR062896
Accession ID Hg19

Library idBAMCTSS
RDhi10080 DRZ007972


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.083
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.467
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0742
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.162
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic1.137
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0215
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0194
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0984
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.373
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.246
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.246
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0427
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.47
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.179
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0984
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11848

Jaspar motifP-value
MA0002.20.0804
MA0003.10.23
MA0004.10.955
MA0006.10.351
MA0007.10.613
MA0009.10.11
MA0014.10.346
MA0017.10.135
MA0018.20.0239
MA0019.10.0822
MA0024.14.83008e-5
MA0025.10.375
MA0027.10.0826
MA0028.10.0205
MA0029.10.724
MA0030.10.0414
MA0031.10.0233
MA0035.20.241
MA0038.10.435
MA0039.20.0283
MA0040.10.199
MA0041.10.542
MA0042.10.615
MA0043.10.065
MA0046.10.102
MA0047.20.478
MA0048.10.0459
MA0050.11.77063e-7
MA0051.11.22213e-6
MA0052.10.874
MA0055.11.30614e-5
MA0057.10.933
MA0058.10.425
MA0059.10.795
MA0060.11.00131e-4
MA0061.10.00305
MA0062.20.263
MA0065.20.498
MA0066.10.813
MA0067.10.605
MA0068.10.114
MA0069.10.672
MA0070.10.177
MA0071.10.369
MA0072.10.81
MA0073.10.686
MA0074.10.138
MA0076.10.00654
MA0077.10.122
MA0078.10.142
MA0079.20.372
MA0080.21.63846e-13
MA0081.10.0403
MA0083.10.302
MA0084.10.138
MA0087.10.213
MA0088.15.45341e-5
MA0090.10.837
MA0091.10.174
MA0092.10.58
MA0093.10.854
MA0099.21.79774e-6
MA0100.10.499
MA0101.10.159
MA0102.20.141
MA0103.10.828
MA0104.20.0301
MA0105.10.0276
MA0106.10.0309
MA0107.10.00896
MA0108.20.00388
MA0111.10.897
MA0112.20.151
MA0113.10.053
MA0114.10.187
MA0115.10.876
MA0116.10.137
MA0117.10.526
MA0119.10.36
MA0122.10.9
MA0124.10.669
MA0125.10.699
MA0131.10.509
MA0135.10.0178
MA0136.14.20819e-11
MA0137.20.036
MA0138.20.595
MA0139.10.583
MA0140.10.361
MA0141.10.326
MA0142.10.0769
MA0143.10.349
MA0144.10.00532
MA0145.10.237
MA0146.10.00421
MA0147.10.00134
MA0148.10.256
MA0149.10.33
MA0150.10.0189
MA0152.10.513
MA0153.10.0981
MA0154.10.0291
MA0155.10.756
MA0156.11.07929e-5
MA0157.10.00146
MA0159.10.191
MA0160.10.532
MA0162.10.287
MA0163.10.508
MA0164.10.482
MA0258.10.64
MA0259.10.0439



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11848

Novel motifP-value
10.338
100.33
1000.0639
1010.647
1020.998
1030.222
1040.504
1050.834
1063.09753e-6
1070.0152
1080.989
1090.0133
110.366
1100.208
1110.536
1120.34
1130.0145
1140.493
1150.932
1160.584
1170.11
1180.837
1190.134
120.434
1200.717
1210.0811
1220.815
1230.218
1240.838
1250.931
1260.837
1270.583
1280.00116
1290.702
130.0359
1300.959
1310.351
1320.542
1330.00657
1340.356
1350.125
1360.0497
1370.622
1380.513
1390.151
140.395
1400.24
1410.538
1420.807
1430.0619
1440.697
1450.492
1460.295
1470.408
1480.545
1490.0339
150.498
1500.0915
1510.265
1520.975
1530.118
1540.967
1550.316
1560.786
1570.643
1580.331
1590.251
160.648
1600.928
1610.644
1620.153
1630.0499
1640.972
1650.315
1660.163
1670.761
1680.0146
1690.721
170.399
180.206
190.421
20.0938
200.123
210.885
220.936
230.00211
240.956
250.633
260.564
270.243
280.966
290.475
30.504
300.302
310.27
320.877
330.974
340.477
350.597
360.0774
370.815
380.484
390.389
40.912
400.00932
410.0906
420.0875
430.247
440.481
450.0512
460.681
470.0347
480.182
490.983
50.184
500.9
510.945
520.123
530.575
540.595
550.737
560.687
570.383
580.0919
590.0937
60.895
600.0592
610.361
620.202
630.961
640.536
650.0291
660.0563
670.927
680.116
690.468
70.372
700.767
710.918
720.138
730.442
740.161
750.0847
760.809
770.477
780.933
790.18
80.112
800.0228
810.617
820.711
830.706
840.982
850.0406
860.581
870.105
880.0904
890.651
90.281
900.944
910.0494
920.0604
930.753
940.984
950.00165
960.855
970.823
980.408
990.601



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11848


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
7 (disease of anatomical entity)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0100678 (G-402 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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