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{{f5samples
{{f5samples
|id=FF:10082-102B1
|DRA_sample_Accession=CAGE@SAMD00005055
|name=colon, adult, donor1
|accession_numbers=CAGE;DRX008637;DRR009509;DRZ000934;DRZ002319;DRZ012284;DRZ013669
|sample_id=10082
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
|rna_tube_id=102B1
|rna_box=102
|rna_position=B1
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number=8101369A-2
|rna_catalog_number=Cat: 636643 Lot: 8101369A-2
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=23 years old adult
|sample_tissue=colon
|sample_donor(cell lot)=1
|sample_sex=female
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs11794,LSID820,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000160,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001007,UBERON:0001062,UBERON:0001155,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007023,UBERON:0007026
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010014
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr5:149546334..149546364,+!p1@CDX1!2.45!279.67!CDX1;;chr1:201979743..201979762,+!p1@ELF3!2.32!209.01!ELF3;;chr4:174451370..174451387,-!p1@HAND2!2.13!133.37!HAND2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!96.54!TFCP2L1;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.64!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.87!73.65!SPDEF;;chr6:134210243..134210257,+!p1@TCF21!1.86!70.66!TCF21;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.68!HNF4A;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.62!FOXF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.75!54.74!ZBED1;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.75!HOXB6;;chr7:27192185..27192209,-!p1@HOXA3!1.72!51.75!HOXA3;;chr11:34642612..34642646,+!p1@EHF!1.71!49.76!EHF;;chr19:50922187..50922204,+!p1@SPIB!1.71!49.76!SPIB;;chr19:46801639..46801699,+!p1@HIF3A!1.65!43.79!HIF3A;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.77!PPARG;;chr4:174451350..174451363,-!p3@HAND2!1.60!38.82!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.57!35.83!HNF4G;;chr6:135502501..135502546,+!p1@MYB!1.53!38.82!MYB;;chr13:28543431..28543487,-!p1@CDX2!1.52!31.85!CDX2;;chr6:1389789..1389821,+!p1@FOXF2!1.51!42.80!FOXF2;;chr19:46367576..46367592,+!p1@FOXA3!1.50!30.85!FOXA3;;chr13:28543285..28543314,-!p2@CDX2!1.50!30.85!CDX2;;chr8:102504651..102504683,+!p1@GRHL2!1.45!26.87!GRHL2;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.88!HOXA9;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.88!IRF8;;chr2:176973498..176973524,+!p1@HOXD10!1.43!25.88!HOXD10;;chr1:47903709..47903764,+!p1@BC169308!1.42!28.86!FOXD2;;chr14:38064429..38064486,-!p1@FOXA1!1.41!24.88!FOXA1;;chr4:149363494..149363543,-!p1@NR3C2!1.41!24.88!NR3C2;;chr13:73633131..73633149,+!p1@KLF5!1.40!248.82!KLF5;;chr11:34642656..34642667,+!p2@EHF!1.40!23.89!EHF;;chr5:153857778..153857794,-!p1@HAND1!1.40!23.89!HAND1;;chr4:94749897..94749909,+!p1@ATOH1!1.38!22.89!ATOH1;;chr10:101292684..101292706,+!p1@NKX2-3!1.38!22.89!NKX2-3;;chr13:28543253..28543276,-!p5@CDX2!1.38!22.89!CDX2;;chr12:48298765..48298783,-!p2@VDR!1.37!45.78!VDR;;chr13:28543388..28543406,-!p3@CDX2!1.34!20.90!CDX2;;chr13:28543316..28543329,-!p4@CDX2!1.32!19.91!CDX2;;chr2:177001290..177001315,+!p1@HOXD3!1.32!19.91!HOXD3;;chr19:33793430..33793447,-!p1@CEBPA!1.31!79.62!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.30!18.91!NR1I2;;chr7:27224842..27224872,-!p1@HOXA11!1.28!17.91!HOXA11;;chr11:113930425..113930471,+!p1@ZBTB16!1.26!24.88!ZBTB16;;chr18:45663490..45663528,-!p2@ZBTB7C!1.25!16.92!ZBTB7C;;chr20:43029862..43029900,+!p1@HNF4A!1.25!16.92!HNF4A;;chr17:53342311..53342400,+!p1@HLF!1.24!18.91!HLF;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.76!GATA6;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.90!SOX18;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.91!IRF6;;chr7:27224795..27224840,-!p2@HOXA11!1.23!15.92!HOXA11;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.85!SATB2;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.93!TOX3;;chr17:36105042..36105060,-!p1@HNF1B!1.20!14.93!HNF1B;;chr1:6479968..6479986,-!p1@HES2!1.20!14.93!HES2;;chr20:18038521..18038571,-!p1@OVOL2!1.20!14.93!OVOL2;;chr2:60780753..60780800,-!p1@BCL11A!1.17!67.68!BCL11A;;chr6:391743..391759,+!p1@IRF4!1.17!13.93!IRF4;;chr4:149363475..149363492,-!p2@NR3C2!1.14!12.94!NR3C2;;chr3:24536253..24536328,-!p1@THRB!1.12!22.89!THRB;;chr2:177001268..177001287,+!p3@HOXD3!1.11!11.94!HOXD3;;chr2:200322229..200322251,-!p3@SATB2!1.11!11.94!SATB2;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.94!ZBTB16;;chr20:50179368..50179392,-!p2@NFATC2!1.10!14.93!NFATC2;;chr17:38256822..38256851,-!p1@NR1D1!1.09!88.58!NR1D1;;chr7:113726357..113726443,+!p1@FOXP2!1.08!18.91!FOXP2;;chr11:111249993..111250006,-!p1@POU2AF1!1.08!10.95!POU2AF1;;chr11:65554528..65554546,+!p1@OVOL1!1.04!9.95!OVOL1;;chr6:34524049..34524089,-!p2@SPDEF!1.04!9.95!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.04!9.95!HOXA9;;chr1:164528445..164528459,+!p2@PBX1!1.02!29.86!PBX1;;chr18:19749517..19749531,+!p3@GATA6!1.02!16.92!GATA6;;chr16:79634595..79634620,-!p2@MAF!1.01!16.92!MAF;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.95!MECOM;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.96!SOX10;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.96!HOXD8;;chr4:13546632..13546662,-!p1@NKX3-2!1.00!8.96!NKX3-2;;chr4:57522674..57522699,-!p5@HOPX!1.00!8.96!HOPX;;chr18:19749504..19749515,+!p5@GATA6!1.00!8.96!GATA6;;chr1:10856639..10856662,-!p2@CASZ1!1.00!8.96!CASZ1;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.96!NR5A2;;chr1:2461692..2461710,-!p1@HES5!1.00!8.96!HES5;;chr11:65554563..65554576,+!p2@OVOL1!1.00!8.96!OVOL1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!8.96!FOXF2;;chr7:27213893..27213954,-!p1@HOXA10!1.00!8.96!HOXA10;;chr12:122516646..122516668,+!p1@MLXIP!0.99!120.43!MLXIP;;chr1:164528410..164528428,+!p1@PBX1!0.97!64.69!PBX1;;chr1:61548225..61548299,+!p1@NFIA!0.96!108.48!NFIA;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.89!OSR1;;chr20:50159198..50159299,-!p1@NFATC2!0.96!11.94!NFATC2;;chr1:151804244..151804310,-!p1@RORC!0.95!7.96!RORC;;chr1:209979411..209979433,-!p2@IRF6!0.95!7.96!IRF6;;chr20:42984073..42984085,+!p5@HNF4A!0.95!7.96!HNF4A;;chr2:242556880..242556899,-!p5@THAP4!0.95!7.96!THAP4;;chr4:111544219..111544240,-!p1@PITX2!0.95!7.96!PITX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.95!7.96!PKNOX2;;chr11:2292226..2292270,-!p1@ASCL2!0.95!7.96!ASCL2;;chr7:27239703..27239715,-!p1@HOXA13!0.95!7.96!HOXA13;;chr13:73636252..73636307,+!p2@KLF5!0.94!8.96!KLF5;;chr1:8763296..8763339,-!p9@RERE!0.93!18.91!RERE;;chrX:131623044..131623089,-!p1@MBNL3!0.92!31.85!MBNL3;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.94!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.91!EBF1;;chr7:27179814..27179840,-!p4@HOXA3!0.90!6.97!HOXA3;;chr7:50344289..50344323,+!p1@IKZF1!0.90!6.97!IKZF1;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.97!MLXIPL;;chr11:71955210..71955227,-!p1@PHOX2A!0.90!6.97!PHOX2A;;chr13:28541477..28541493,-!p6@CDX2!0.90!6.97!CDX2;;chr15:96869206..96869220,+!p21@NR2F2!0.90!6.97!NR2F2;;chr17:46806035..46806059,-!p2@HOXB13!0.90!6.97!HOXB13;;chr18:45663666..45663709,-!p4@ZBTB7C!0.90!6.97!ZBTB7C;;chr2:200325452..200325462,-!p33@SATB2!0.90!6.97!SATB2;;chr2:200329672..200329678,-!p50@SATB2!0.90!6.97!SATB2;;chr2:242556900..242556916,-!p6@THAP4!0.90!6.97!THAP4;;chr3:63953435..63953499,+!p1@ATXN7!0.90!6.97!ATXN7;;chr1:200011711..200011752,+!p3@NR5A2!0.90!6.97!NR5A2;;chr1:25291475..25291511,-!p2@RUNX3!0.90!6.97!RUNX3;;chr20:43030002..43030028,+!p3@HNF4A!0.90!6.97!HNF4A;;chr16:1464688..1464728,-!p1@UNKL!0.89!48.77!UNKL;;chr16:79634624..79634642,-!p1@MAF!0.89!27.87!MAF;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.93!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!0.89!9.95!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.83!CREB3L1;;chr9:127533519..127533573,-!p2@NR6A1!0.88!7.96!NR6A1;;chr1:221052840..221052875,+!p4@HLX!0.88!7.96!HLX;;chr16:73092963..73093001,-!p2@ZFHX3!0.87!14.93!ZFHX3;;chr17:46687959..46688007,-!p2@HOXB7!0.87!8.96!HOXB7;;chr3:12329397..12329433,+!p2@PPARG!0.86!14.93!PPARG;;chr1:214161272..214161322,+!p1@PROX1!0.86!8.96!PROX1;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.96!MEIS1;;chrX:106960285..106960299,-!p1@TSC22D3!0.85!174.17!TSC22D3;;chr3:71632864..71632885,-!p4@FOXP1!0.85!21.90!FOXP1;;chr17:1959369..1959388,+!p2@HIC1!0.85!16.92!HIC1;;chr3:114819124..114819200,-!p3@ZBTB20!0.85!14.93!ZBTB20;;chr8:60031762..60031803,-!p3@TOX!0.85!8.96!TOX;;chr4:149363544..149363583,-!p3@NR3C2!0.85!6.97!NR3C2;;chr13:73636516..73636532,+!p3@KLF5!0.85!6.97!KLF5;;chr8:60031682..60031710,-!p2@TOX!0.84!9.95!TOX;;chr2:113057415..113057477,+!p3@ZC3H6!0.84!7.96!ZC3H6;;chr2:177001237..177001252,+!p5@HOXD3!0.84!5.97!HOXD3;;chr5:134369879..134369898,-!p2@PITX1!0.84!5.97!PITX1;;chr5:71803177..71803255,-!p1@ZNF366!0.84!5.97!ZNF366;;chr7:63505799..63505904,+!p1@ZNF727!0.84!5.97!ZNF727;;chr11:12696579..12696611,+!p4@TEAD1!0.84!5.97!TEAD1;;chr12:100897130..100897149,+!p3@NR1H4!0.84!5.97!NR1H4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.84!5.97!PEG3;;chr1:10856665..10856683,-!p4@CASZ1!0.84!5.97!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!0.84!5.97!CASZ1;;chr1:40105299..40105326,-!p1@HEYL!0.84!5.97!HEYL;;chr1:47903765..47903783,+!p3@BC169308!0.84!5.97!FOXD2;;chr17:46806067..46806097,-!p1@HOXB13!0.84!5.97!HOXB13;;chr18:45663584..45663592,-!p9@ZBTB7C!0.84!5.97!ZBTB7C;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.91!BCL11A;;chr8:71316428..71316459,-!p2@NCOA2!0.83!9.95!NCOA2;;chr11:19263160..19263176,-!p1@E2F8!0.83!6.97!E2F8;;chr18:72922811..72922827,+!p1@TSHZ1!0.82!29.86!TSHZ1;;chr17:46621937..46621966,-!p2@HOXB2!0.82!15.92!HOXB2;;chrX:107018969..107019024,-!p6@TSC22D3!0.82!7.96!TSC22D3;;chr3:141868230..141868250,-!p6@TFDP2!0.82!6.97!TFDP2;;chr10:114709999..114710031,+!p1@TCF7L2!0.81!140.33!TCF7L2;;chr1:61548069..61548102,+!p3@NFIA!0.81!13.93!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.81!12.94!NR1H3;;chr12:122516678..122516687,+!p3@MLXIP!0.81!10.95!MLXIP;;chr3:18486354..18486377,-!p2@SATB1!0.81!6.97!SATB1;;chr9:110252035..110252057,-!p1@KLF4!0.80!91.56!KLF4;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.94!SOX15;;chr17:38256799..38256815,-!p3@NR1D1!0.80!9.95!NR1D1;;chr11:113930291..113930339,+!p2@ZBTB16!0.80!8.96!ZBTB16;;chr20:6748325..6748352,+!p1@BMP2!0.80!7.96!BMP2;;chr3:69788576..69788648,+!p1@MITF!0.79!29.86!MITF;;chr3:71632840..71632857,-!p10@FOXP1!0.79!10.95!FOXP1;;chr6:7108179..7108199,+!p4@RREB1!0.79!10.95!RREB1;;chr7:44143978..44143989,+!p2@AEBP1!0.79!9.95!AEBP1;;chr12:48298785..48298828,-!p1@VDR!0.78!28.86!VDR;;chr2:66662249..66662267,+!p2@MEIS1!0.78!20.90!MEIS1;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.91!ZBTB20;;chr1:8483756..8483809,-!p5@RERE!0.78!14.93!RERE;;chr1:23857325..23857416,-!p2@E2F2!0.78!5.97!E2F2;;chr22:41763452..41763466,+!p2@TEF!0.78!4.98!TEF;;chr2:100759010..100759035,-!p1@AFF3!0.78!4.98!AFF3;;chr2:200323212..200323223,-!p8@SATB2!0.78!4.98!SATB2;;chr3:128212033..128212051,-!p1@GATA2!0.78!4.98!GATA2;;chr3:141043020..141043049,+!p17@ZBTB38!0.78!4.98!ZBTB38;;chr4:174450089..174450153,-!p2@HAND2!0.78!4.98!HAND2;;chr4:57522598..57522664,-!p3@HOPX!0.78!4.98!HOPX;;chr17:7197911..7197964,-!p1@YBX2!0.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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
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|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
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|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.ctss.bed.gz
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10082
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10082
|name=colon, adult, donor1
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|rna_box=102
|rna_catalog_number=Cat: 636643 Lot: 8101369A-2
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=8101369A-2
|rna_od260/230=
|rna_od260/280=
|rna_position=B1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=102B1
|rna_weight_ug=10
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=23 years old adult
|sample_disease=normal
|sample_donor(cell lot)=1
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.33576157342113e-242!GO:0005737;cytoplasm;8.2147740725918e-188!GO:0044444;cytoplasmic part;2.38313911886466e-132!GO:0043226;organelle;3.75168713283644e-125!GO:0043229;intracellular organelle;5.38659407455987e-125!GO:0043231;intracellular membrane-bound organelle;4.30217676981582e-120!GO:0043227;membrane-bound organelle;5.22341579430968e-120!GO:0044422;organelle part;1.57238062205557e-92!GO:0044446;intracellular organelle part;3.25842874569901e-91!GO:0005515;protein binding;4.10637471931747e-75!GO:0005739;mitochondrion;3.58355250364844e-64!GO:0032991;macromolecular complex;4.14821700727811e-58!GO:0031090;organelle membrane;1.376497880697e-51!GO:0044237;cellular metabolic process;2.76202533431938e-49!GO:0044238;primary metabolic process;5.35847151980216e-48!GO:0044429;mitochondrial part;7.75572557621999e-44!GO:0030529;ribonucleoprotein complex;6.73489262512807e-43!GO:0043233;organelle lumen;7.72532897021916e-42!GO:0031974;membrane-enclosed lumen;7.72532897021916e-42!GO:0019538;protein metabolic process;9.68660620057028e-41!GO:0043170;macromolecule metabolic process;1.7260180200181e-39!GO:0031967;organelle envelope;3.35933314713181e-39!GO:0031975;envelope;6.03632995981252e-39!GO:0016043;cellular component organization and biogenesis;1.22430471035389e-37!GO:0044260;cellular macromolecule metabolic process;1.64531157633034e-35!GO:0033036;macromolecule localization;1.16100773790328e-34!GO:0044267;cellular protein metabolic process;1.16288382484685e-34!GO:0015031;protein transport;3.77832661176966e-33!GO:0008104;protein localization;4.64597920210924e-33!GO:0003723;RNA binding;5.3545806880747e-33!GO:0043234;protein complex;1.64198762888066e-32!GO:0045184;establishment of protein localization;6.7319798456424e-32!GO:0005840;ribosome;1.13230864401622e-31!GO:0044428;nuclear part;1.761739029895e-31!GO:0019866;organelle inner membrane;7.39083500166898e-30!GO:0005740;mitochondrial envelope;7.61958933684338e-30!GO:0009058;biosynthetic process;2.97866922145438e-29!GO:0031966;mitochondrial membrane;3.06569142048293e-29!GO:0003735;structural constituent of ribosome;3.21626071120362e-28!GO:0005743;mitochondrial inner membrane;3.01660334170516e-27!GO:0046907;intracellular transport;5.01335729796794e-27!GO:0005829;cytosol;1.23294779725751e-26!GO:0006412;translation;2.08385435927889e-26!GO:0009059;macromolecule biosynthetic process;3.23130391505815e-26!GO:0033279;ribosomal subunit;4.36951138489253e-26!GO:0065003;macromolecular complex assembly;9.47762476703182e-26!GO:0005634;nucleus;2.58733087681886e-24!GO:0006886;intracellular protein transport;4.40509708117845e-24!GO:0022607;cellular component assembly;4.01390119579143e-23!GO:0044249;cellular biosynthetic process;1.39860167469376e-22!GO:0005783;endoplasmic reticulum;1.24657612436697e-21!GO:0012505;endomembrane system;2.17976203364988e-20!GO:0006996;organelle organization and biogenesis;3.12667781610719e-20!GO:0006119;oxidative phosphorylation;1.10486150734991e-19!GO:0016071;mRNA metabolic process;2.46581066513517e-19!GO:0031980;mitochondrial lumen;6.94769386977729e-19!GO:0005759;mitochondrial matrix;6.94769386977729e-19!GO:0051641;cellular localization;8.65932532658044e-19!GO:0051649;establishment of cellular localization;1.67513403051863e-18!GO:0044455;mitochondrial membrane part;2.12777414474244e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.35720111576954e-18!GO:0043228;non-membrane-bound organelle;2.35720111576954e-18!GO:0043232;intracellular non-membrane-bound organelle;2.35720111576954e-18!GO:0031981;nuclear lumen;2.95088018095604e-18!GO:0005794;Golgi apparatus;7.37779440383491e-18!GO:0048770;pigment granule;8.39788278556649e-18!GO:0042470;melanosome;8.39788278556649e-18!GO:0006396;RNA processing;1.68160128596779e-17!GO:0005746;mitochondrial respiratory chain;2.09243203165396e-17!GO:0008380;RNA splicing;8.87397015724527e-17!GO:0043283;biopolymer metabolic process;1.22617828049465e-16!GO:0000166;nucleotide binding;7.6620664727435e-16!GO:0044432;endoplasmic reticulum part;8.14647194136143e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.45452059258061e-15!GO:0003954;NADH dehydrogenase activity;1.45452059258061e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.45452059258061e-15!GO:0006397;mRNA processing;1.75786994150575e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.10051383628522e-15!GO:0043412;biopolymer modification;5.36002602154434e-15!GO:0008134;transcription factor binding;8.11935484630587e-15!GO:0006464;protein modification process;2.3463823154176e-14!GO:0044445;cytosolic part;2.72906644689187e-14!GO:0015935;small ribosomal subunit;5.99928890658564e-14!GO:0016192;vesicle-mediated transport;2.94887313060236e-13!GO:0015934;large ribosomal subunit;3.33175535287107e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.53163355195385e-13!GO:0045271;respiratory chain complex I;3.53163355195385e-13!GO:0005747;mitochondrial respiratory chain complex I;3.53163355195385e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.04281478387017e-13!GO:0042773;ATP synthesis coupled electron transport;7.04281478387017e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.15311944063041e-12!GO:0016874;ligase activity;1.55917476208056e-12!GO:0051186;cofactor metabolic process;1.99477627280267e-12!GO:0006793;phosphorus metabolic process;5.80703155988944e-12!GO:0006796;phosphate metabolic process;5.80703155988944e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.82790875052043e-12!GO:0043687;post-translational protein modification;1.09134599515382e-11!GO:0005654;nucleoplasm;1.14429302160292e-11!GO:0009055;electron carrier activity;1.23493708101621e-11!GO:0017076;purine nucleotide binding;1.25285194804638e-11!GO:0032553;ribonucleotide binding;1.57550646787412e-11!GO:0032555;purine ribonucleotide binding;1.57550646787412e-11!GO:0044265;cellular macromolecule catabolic process;1.86646318082058e-11!GO:0048193;Golgi vesicle transport;2.02914721493308e-11!GO:0006461;protein complex assembly;2.25208386648612e-11!GO:0005681;spliceosome;2.63118163371584e-11!GO:0006605;protein targeting;4.69479947323684e-11!GO:0006732;coenzyme metabolic process;4.85459517488997e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.39536038321682e-11!GO:0005789;endoplasmic reticulum membrane;6.25917889204283e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.63618947463092e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;9.92977651576501e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.13861803416231e-10!GO:0044248;cellular catabolic process;1.53558236937796e-10!GO:0019941;modification-dependent protein catabolic process;1.62843354817838e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.62843354817838e-10!GO:0016310;phosphorylation;1.76215640514058e-10!GO:0044257;cellular protein catabolic process;2.69340060567762e-10!GO:0044451;nucleoplasm part;3.18251339020977e-10!GO:0010467;gene expression;3.68873025743221e-10!GO:0005761;mitochondrial ribosome;4.37135622322546e-10!GO:0000313;organellar ribosome;4.37135622322546e-10!GO:0022618;protein-RNA complex assembly;5.42504891391373e-10!GO:0031982;vesicle;7.23169293453877e-10!GO:0008565;protein transporter activity;8.78482021634417e-10!GO:0048523;negative regulation of cellular process;9.09340046994782e-10!GO:0031410;cytoplasmic vesicle;1.0950786862518e-09!GO:0005524;ATP binding;1.26816273865508e-09!GO:0030554;adenyl nucleotide binding;1.30212430577684e-09!GO:0032559;adenyl ribonucleotide binding;1.30212430577684e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.35523682494046e-09!GO:0006457;protein folding;1.48171711837526e-09!GO:0005635;nuclear envelope;1.62143646812803e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.77074713268589e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.86030501836461e-09!GO:0031988;membrane-bound vesicle;1.99412617195971e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.09667320642457e-09!GO:0006259;DNA metabolic process;2.6894872457435e-09!GO:0012501;programmed cell death;2.73289281007934e-09!GO:0016023;cytoplasmic membrane-bound vesicle;2.73289281007934e-09!GO:0009060;aerobic respiration;2.73289281007934e-09!GO:0006512;ubiquitin cycle;2.89847533232584e-09!GO:0006915;apoptosis;3.38495762195228e-09!GO:0008092;cytoskeletal protein binding;3.76615936913768e-09!GO:0045333;cellular respiration;3.98122106315868e-09!GO:0031965;nuclear membrane;5.62239953374715e-09!GO:0043285;biopolymer catabolic process;8.32870042866621e-09!GO:0016462;pyrophosphatase activity;8.94594005721667e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.30925150492606e-08!GO:0005793;ER-Golgi intermediate compartment;1.49356527363778e-08!GO:0006913;nucleocytoplasmic transport;1.52810586038624e-08!GO:0016817;hydrolase activity, acting on acid anhydrides;1.6299759628608e-08!GO:0008219;cell death;1.7763596356977e-08!GO:0016265;death;1.7763596356977e-08!GO:0008135;translation factor activity, nucleic acid binding;1.79968048030493e-08!GO:0009057;macromolecule catabolic process;2.02972182512334e-08!GO:0003712;transcription cofactor activity;2.43603557099529e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24370458180833e-08!GO:0030163;protein catabolic process;3.99744526394737e-08!GO:0051169;nuclear transport;3.99832649494818e-08!GO:0048519;negative regulation of biological process;4.19754902955096e-08!GO:0051082;unfolded protein binding;4.53097037965626e-08!GO:0006099;tricarboxylic acid cycle;4.62910329213109e-08!GO:0046356;acetyl-CoA catabolic process;4.62910329213109e-08!GO:0005768;endosome;5.1896500721689e-08!GO:0019829;cation-transporting ATPase activity;5.31281885429977e-08!GO:0005773;vacuole;6.13139510614408e-08!GO:0016740;transferase activity;6.3554809813863e-08!GO:0017111;nucleoside-triphosphatase activity;7.33441289695433e-08!GO:0030029;actin filament-based process;8.47543539515665e-08!GO:0006084;acetyl-CoA metabolic process;1.04072986713305e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.08052040548757e-07!GO:0006091;generation of precursor metabolites and energy;1.46587152061455e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.80962348283273e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.80962348283273e-07!GO:0016491;oxidoreductase activity;2.24274071688847e-07!GO:0006446;regulation of translational initiation;2.52108583165117e-07!GO:0007049;cell cycle;3.27877302139343e-07!GO:0044431;Golgi apparatus part;3.60118038303509e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.63682858999192e-07!GO:0000323;lytic vacuole;4.20225623830804e-07!GO:0005764;lysosome;4.20225623830804e-07!GO:0009109;coenzyme catabolic process;4.60924372388396e-07!GO:0003743;translation initiation factor activity;5.33266408986415e-07!GO:0006366;transcription from RNA polymerase II promoter;5.8909110680703e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.71328927077904e-07!GO:0044453;nuclear membrane part;6.84575058695003e-07!GO:0007264;small GTPase mediated signal transduction;6.882395223959e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;9.10307200877881e-07!GO:0005788;endoplasmic reticulum lumen;9.16600504094133e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;9.69150504919414e-07!GO:0000375;RNA splicing, via transesterification reactions;9.69150504919414e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.69150504919414e-07!GO:0008639;small protein conjugating enzyme activity;1.15630661994711e-06!GO:0017038;protein import;1.16287535981912e-06!GO:0045259;proton-transporting ATP synthase complex;1.32140518718239e-06!GO:0048475;coated membrane;1.4017816560137e-06!GO:0030117;membrane coat;1.4017816560137e-06!GO:0051187;cofactor catabolic process;1.5339503020148e-06!GO:0004842;ubiquitin-protein ligase activity;1.5339503020148e-06!GO:0006413;translational initiation;1.56085187409571e-06!GO:0016604;nuclear body;1.70971364282716e-06!GO:0009056;catabolic process;2.09996364643003e-06!GO:0015986;ATP synthesis coupled proton transport;2.9848042732522e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.9848042732522e-06!GO:0030120;vesicle coat;2.98541076815036e-06!GO:0030662;coated vesicle membrane;2.98541076815036e-06!GO:0003779;actin binding;3.21067811822081e-06!GO:0006323;DNA packaging;3.50367448226816e-06!GO:0019787;small conjugating protein ligase activity;3.50534973976014e-06!GO:0007010;cytoskeleton organization and biogenesis;4.21801965619613e-06!GO:0031252;leading edge;5.70206983683851e-06!GO:0051188;cofactor biosynthetic process;7.33093237669825e-06!GO:0016564;transcription repressor activity;8.45481488601404e-06!GO:0044255;cellular lipid metabolic process;9.36034579670186e-06!GO:0007265;Ras protein signal transduction;9.69150233756814e-06!GO:0000785;chromatin;9.98580275345308e-06!GO:0005730;nucleolus;1.29568142236956e-05!GO:0000139;Golgi membrane;1.50566617504021e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.60762859952291e-05!GO:0051246;regulation of protein metabolic process;1.68718809192069e-05!GO:0005770;late endosome;1.7101907069079e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.72714246552524e-05!GO:0019899;enzyme binding;1.95605631635275e-05!GO:0031324;negative regulation of cellular metabolic process;2.01288310338821e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.22001554941569e-05!GO:0042981;regulation of apoptosis;2.24155333303882e-05!GO:0005643;nuclear pore;2.3866592453643e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.63501449330631e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.91076091752204e-05!GO:0042623;ATPase activity, coupled;2.95438735092647e-05!GO:0009892;negative regulation of metabolic process;2.95438735092647e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.33867706716194e-05!GO:0016607;nuclear speck;3.44464057074221e-05!GO:0043067;regulation of programmed cell death;3.50678676654682e-05!GO:0005083;small GTPase regulator activity;4.15724770190684e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.42674208982941e-05!GO:0051427;hormone receptor binding;4.43001528554912e-05!GO:0048471;perinuclear region of cytoplasm;4.43316510450386e-05!GO:0065004;protein-DNA complex assembly;4.44035518899402e-05!GO:0044262;cellular carbohydrate metabolic process;4.55566527731913e-05!GO:0044440;endosomal part;4.62432387583884e-05!GO:0010008;endosome membrane;4.62432387583884e-05!GO:0030133;transport vesicle;5.07258627846883e-05!GO:0005798;Golgi-associated vesicle;5.08281779581645e-05!GO:0016301;kinase activity;5.26118589389427e-05!GO:0006333;chromatin assembly or disassembly;5.55465737903545e-05!GO:0016881;acid-amino acid ligase activity;5.65444129438979e-05!GO:0051170;nuclear import;5.94715281429851e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.47982917921023e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.47982917921023e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.50326562772741e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.50326562772741e-05!GO:0006606;protein import into nucleus;6.55395122534902e-05!GO:0006754;ATP biosynthetic process;6.64627177981849e-05!GO:0006753;nucleoside phosphate metabolic process;6.64627177981849e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.85648070871221e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.22152082248588e-05!GO:0050794;regulation of cellular process;7.32156324727359e-05!GO:0065002;intracellular protein transport across a membrane;7.67234752074668e-05!GO:0006163;purine nucleotide metabolic process;7.67234752074668e-05!GO:0035257;nuclear hormone receptor binding;7.84745592218506e-05!GO:0008610;lipid biosynthetic process;7.84745592218506e-05!GO:0009108;coenzyme biosynthetic process;7.8956324440113e-05!GO:0009150;purine ribonucleotide metabolic process;8.10955343269619e-05!GO:0043069;negative regulation of programmed cell death;8.22226430156206e-05!GO:0006629;lipid metabolic process;9.60457450273387e-05!GO:0007243;protein kinase cascade;0.000101453899912368!GO:0016887;ATPase activity;0.000102136990189807!GO:0051276;chromosome organization and biogenesis;0.000102136990189807!GO:0043066;negative regulation of apoptosis;0.000104168441371859!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000106577057547633!GO:0004812;aminoacyl-tRNA ligase activity;0.000106577057547633!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000106577057547633!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000106577057547633!GO:0006164;purine nucleotide biosynthetic process;0.000110554675819085!GO:0009199;ribonucleoside triphosphate metabolic process;0.00011107696442334!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000112210307361965!GO:0009144;purine nucleoside triphosphate metabolic process;0.000112210307361965!GO:0009152;purine ribonucleotide biosynthetic process;0.000112286410120381!GO:0007242;intracellular signaling cascade;0.000112662309541723!GO:0009141;nucleoside triphosphate metabolic process;0.00011430553813249!GO:0016481;negative regulation of transcription;0.000128241528973386!GO:0045786;negative regulation of progression through cell cycle;0.000128241528973386!GO:0005791;rough endoplasmic reticulum;0.000137410225219311!GO:0022402;cell cycle process;0.0001382895474542!GO:0006334;nucleosome assembly;0.0001382895474542!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000143096207566165!GO:0051726;regulation of cell cycle;0.000146228247846143!GO:0042802;identical protein binding;0.000152624283820973!GO:0005762;mitochondrial large ribosomal subunit;0.000155173479000834!GO:0000315;organellar large ribosomal subunit;0.000155173479000834!GO:0009259;ribonucleotide metabolic process;0.000155486676827852!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000155827603081782!GO:0000074;regulation of progression through cell cycle;0.000156981687246994!GO:0046034;ATP metabolic process;0.000159638224173082!GO:0006082;organic acid metabolic process;0.000165066759005707!GO:0007005;mitochondrion organization and biogenesis;0.000171133541352179!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000174076084765384!GO:0015399;primary active transmembrane transporter activity;0.000174076084765384!GO:0003714;transcription corepressor activity;0.000191278650066117!GO:0004298;threonine endopeptidase activity;0.000203626449490532!GO:0043623;cellular protein complex assembly;0.000225230155095871!GO:0019752;carboxylic acid metabolic process;0.000228623223344288!GO:0008154;actin polymerization and/or depolymerization;0.000235774768435497!GO:0035258;steroid hormone receptor binding;0.00024229789296858!GO:0043038;amino acid activation;0.00024229789296858!GO:0006418;tRNA aminoacylation for protein translation;0.00024229789296858!GO:0043039;tRNA aminoacylation;0.00024229789296858!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000245614241839448!GO:0030867;rough endoplasmic reticulum membrane;0.000250100283402814!GO:0030695;GTPase regulator activity;0.000269093401434248!GO:0009117;nucleotide metabolic process;0.00027712475012182!GO:0030532;small nuclear ribonucleoprotein complex;0.000287342229380777!GO:0046930;pore complex;0.00029021422255476!GO:0031497;chromatin assembly;0.000301547340237027!GO:0006916;anti-apoptosis;0.000305221706756271!GO:0016044;membrane organization and biogenesis;0.000324054569353908!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000333013979552584!GO:0048522;positive regulation of cellular process;0.000361674025709871!GO:0004674;protein serine/threonine kinase activity;0.000399759486203101!GO:0016787;hydrolase activity;0.000402596173180288!GO:0009260;ribonucleotide biosynthetic process;0.000403598308190712!GO:0050789;regulation of biological process;0.000430088848464264!GO:0044427;chromosomal part;0.00045311669005815!GO:0005694;chromosome;0.00045311669005815!GO:0009966;regulation of signal transduction;0.000512409389529275!GO:0016853;isomerase activity;0.000527545841923043!GO:0051287;NAD binding;0.00057310515455574!GO:0022890;inorganic cation transmembrane transporter activity;0.000625939345258237!GO:0016568;chromatin modification;0.000627512271362818!GO:0051128;regulation of cellular component organization and biogenesis;0.000645856650671984!GO:0050657;nucleic acid transport;0.000691575690778518!GO:0051236;establishment of RNA localization;0.000691575690778518!GO:0050658;RNA transport;0.000691575690778518!GO:0003713;transcription coactivator activity;0.000702151394364484!GO:0008654;phospholipid biosynthetic process;0.000702151394364484!GO:0005741;mitochondrial outer membrane;0.000722951201054006!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000800126311476881!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000820349171206983!GO:0043492;ATPase activity, coupled to movement of substances;0.000860808738036605!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000866527950365709!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000866527950365709!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000866527950365709!GO:0019867;outer membrane;0.000975319991646307!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000982693180676202!GO:0031968;organelle outer membrane;0.000993342885942088!GO:0006403;RNA localization;0.00102835957222668!GO:0005525;GTP binding;0.00105053226448698!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00116503370589111!GO:0045454;cell redox homeostasis;0.00116650847501228!GO:0005769;early endosome;0.00116815761998996!GO:0005885;Arp2/3 protein complex;0.00117944701530019!GO:0006613;cotranslational protein targeting to membrane;0.00119204995487557!GO:0051789;response to protein stimulus;0.00124986257959633!GO:0006986;response to unfolded protein;0.00124986257959633!GO:0003924;GTPase activity;0.001277333588397!GO:0016567;protein ubiquitination;0.00134484325410398!GO:0032446;protein modification by small protein conjugation;0.00135767293545496!GO:0048518;positive regulation of biological process;0.0014132394004319!GO:0043566;structure-specific DNA binding;0.00145729933298219!GO:0016563;transcription activator activity;0.00150696707937719!GO:0005667;transcription factor complex;0.00151597425445558!GO:0030118;clathrin coat;0.00152348615332952!GO:0000314;organellar small ribosomal subunit;0.00159169233721985!GO:0005763;mitochondrial small ribosomal subunit;0.00159169233721985!GO:0007266;Rho protein signal transduction;0.00162962840750342!GO:0006974;response to DNA damage stimulus;0.00163330470870696!GO:0050662;coenzyme binding;0.00164292088962221!GO:0000245;spliceosome assembly;0.00167996679276444!GO:0051920;peroxiredoxin activity;0.00169895091271707!GO:0045893;positive regulation of transcription, DNA-dependent;0.00176800491337979!GO:0006752;group transfer coenzyme metabolic process;0.00181621755152817!GO:0006635;fatty acid beta-oxidation;0.00182799122332658!GO:0046578;regulation of Ras protein signal transduction;0.0018646867686571!GO:0033116;ER-Golgi intermediate compartment membrane;0.00192497409828732!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00203471045170319!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00219766019554562!GO:0006650;glycerophospholipid metabolic process;0.00221209533044669!GO:0019318;hexose metabolic process;0.00230507584047618!GO:0008250;oligosaccharyl transferase complex;0.00242216783678522!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00259443600281433!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00259443600281433!GO:0051252;regulation of RNA metabolic process;0.00259443600281433!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00259443600281433!GO:0004576;oligosaccharyl transferase activity;0.00279689228030336!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0028411384238355!GO:0006892;post-Golgi vesicle-mediated transport;0.00287778446280058!GO:0005996;monosaccharide metabolic process;0.00289991257397959!GO:0008047;enzyme activator activity;0.0029149496828053!GO:0030031;cell projection biogenesis;0.00300230963016039!GO:0030176;integral to endoplasmic reticulum membrane;0.00308863463641272!GO:0003697;single-stranded DNA binding;0.00308901553158135!GO:0005905;coated pit;0.00312593752377605!GO:0019843;rRNA binding;0.00321679810575254!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00321679810575254!GO:0030041;actin filament polymerization;0.00321679810575254!GO:0006468;protein amino acid phosphorylation;0.00322593623429681!GO:0006631;fatty acid metabolic process;0.00331116655454626!GO:0005975;carbohydrate metabolic process;0.00334040477873625!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00370632943332352!GO:0033043;regulation of organelle organization and biogenesis;0.00370632943332352!GO:0001726;ruffle;0.0037600026609143!GO:0004672;protein kinase activity;0.0037600026609143!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00378401848008255!GO:0000151;ubiquitin ligase complex;0.00383102520172799!GO:0016197;endosome transport;0.00396413788552642!GO:0051056;regulation of small GTPase mediated signal transduction;0.00401351779655564!GO:0032787;monocarboxylic acid metabolic process;0.00412711234326219!GO:0051028;mRNA transport;0.00424888272575473!GO:0006897;endocytosis;0.0045088053685459!GO:0010324;membrane invagination;0.0045088053685459!GO:0030132;clathrin coat of coated pit;0.00452848410047983!GO:0009719;response to endogenous stimulus;0.00453270247708589!GO:0030518;steroid hormone receptor signaling pathway;0.00457878948227249!GO:0032561;guanyl ribonucleotide binding;0.00466366369022432!GO:0019001;guanyl nucleotide binding;0.00466366369022432!GO:0017166;vinculin binding;0.0048137486329409!GO:0030658;transport vesicle membrane;0.0048335358632221!GO:0030119;AP-type membrane coat adaptor complex;0.00491647515463557!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00503889043016174!GO:0006399;tRNA metabolic process;0.00519339174005895!GO:0006979;response to oxidative stress;0.00519339174005895!GO:0005637;nuclear inner membrane;0.00520011306752873!GO:0043488;regulation of mRNA stability;0.0053645123118945!GO:0043487;regulation of RNA stability;0.0053645123118945!GO:0005048;signal sequence binding;0.00548314079244889!GO:0045892;negative regulation of transcription, DNA-dependent;0.00555837424680317!GO:0051168;nuclear export;0.00618261863019704!GO:0030131;clathrin adaptor complex;0.00628997654300599!GO:0006818;hydrogen transport;0.00634507414675352!GO:0045941;positive regulation of transcription;0.00636353058839239!GO:0006118;electron transport;0.006380133453515!GO:0045045;secretory pathway;0.00642527343857858!GO:0006066;alcohol metabolic process;0.0064288192202033!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0066867429557281!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0067545750836926!GO:0009100;glycoprotein metabolic process;0.00700674814462956!GO:0015992;proton transport;0.00707578743554256!GO:0006260;DNA replication;0.00813718134840118!GO:0030027;lamellipodium;0.00822370941216681!GO:0016791;phosphoric monoester hydrolase activity;0.00858093896233975!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00878293054399502!GO:0006643;membrane lipid metabolic process;0.00881811896955494!GO:0015629;actin cytoskeleton;0.00881811896955494!GO:0000278;mitotic cell cycle;0.00892631524550632!GO:0005912;adherens junction;0.008999637102936!GO:0006644;phospholipid metabolic process;0.00915425522208028!GO:0016049;cell growth;0.00948293253637145!GO:0008361;regulation of cell size;0.00971575361268321!GO:0000786;nucleosome;0.00974705913798857!GO:0030521;androgen receptor signaling pathway;0.0098756151616917!GO:0004386;helicase activity;0.0100743125814802!GO:0008139;nuclear localization sequence binding;0.0101030097696663!GO:0006891;intra-Golgi vesicle-mediated transport;0.0101030097696663!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0101159101078374!GO:0031902;late endosome membrane;0.0101276176967938!GO:0030134;ER to Golgi transport vesicle;0.0101646052857072!GO:0030832;regulation of actin filament length;0.0110584422551052!GO:0005774;vacuolar membrane;0.0110626342003522!GO:0051017;actin filament bundle formation;0.0112424241217791!GO:0030384;phosphoinositide metabolic process;0.0116164443107373!GO:0045098;type III intermediate filament;0.0121279374717841!GO:0030660;Golgi-associated vesicle membrane;0.0126313215662687!GO:0001666;response to hypoxia;0.012991047699702!GO:0003724;RNA helicase activity;0.012991047699702!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0131246767290728!GO:0015002;heme-copper terminal oxidase activity;0.0131246767290728!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0131246767290728!GO:0004129;cytochrome-c oxidase activity;0.0131246767290728!GO:0006595;polyamine metabolic process;0.0132683840452742!GO:0004177;aminopeptidase activity;0.0135470178766962!GO:0018196;peptidyl-asparagine modification;0.0135470178766962!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0135470178766962!GO:0048037;cofactor binding;0.0138933948348449!GO:0003676;nucleic acid binding;0.0140213174974345!GO:0005099;Ras GTPase activator activity;0.0142821944343102!GO:0019904;protein domain specific binding;0.0144192279026962!GO:0046474;glycerophospholipid biosynthetic process;0.0144672217817981!GO:0030663;COPI coated vesicle membrane;0.0144785639502496!GO:0030126;COPI vesicle coat;0.0144785639502496!GO:0005813;centrosome;0.014595718704431!GO:0009225;nucleotide-sugar metabolic process;0.0149986303984091!GO:0016070;RNA metabolic process;0.0151100038072105!GO:0043021;ribonucleoprotein binding;0.0151100038072105!GO:0005777;peroxisome;0.0151100038072105!GO:0042579;microbody;0.0151100038072105!GO:0032535;regulation of cellular component size;0.0151100038072105!GO:0031301;integral to organelle membrane;0.0155794780681583!GO:0012506;vesicle membrane;0.0157082601569255!GO:0006401;RNA catabolic process;0.0157659003739584!GO:0006612;protein targeting to membrane;0.0161367391171837!GO:0030659;cytoplasmic vesicle membrane;0.0162643374935033!GO:0015630;microtubule cytoskeleton;0.016313566717355!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0164526633942299!GO:0005096;GTPase activator activity;0.0164526633942299!GO:0030127;COPII vesicle coat;0.0164526633942299!GO:0012507;ER to Golgi transport vesicle membrane;0.0164526633942299!GO:0042254;ribosome biogenesis and assembly;0.016605254248589!GO:0007040;lysosome organization and biogenesis;0.0167252851047318!GO:0006402;mRNA catabolic process;0.0168290011445759!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0169304629867069!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0178513308323461!GO:0048487;beta-tubulin binding;0.0178513308323461!GO:0003729;mRNA binding;0.0178884336300643!GO:0016311;dephosphorylation;0.0180590158909036!GO:0051539;4 iron, 4 sulfur cluster binding;0.0180975156466231!GO:0033673;negative regulation of kinase activity;0.0181097442917055!GO:0006469;negative regulation of protein kinase activity;0.0181097442917055!GO:0030522;intracellular receptor-mediated signaling pathway;0.0182394207247991!GO:0016363;nuclear matrix;0.0187984549533583!GO:0006733;oxidoreduction coenzyme metabolic process;0.0189507978606808!GO:0031272;regulation of pseudopodium formation;0.0189507978606808!GO:0031269;pseudopodium formation;0.0189507978606808!GO:0031344;regulation of cell projection organization and biogenesis;0.0189507978606808!GO:0031268;pseudopodium organization and biogenesis;0.0189507978606808!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0189507978606808!GO:0031274;positive regulation of pseudopodium formation;0.0189507978606808!GO:0032940;secretion by cell;0.0189842441051333!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.019119500096857!GO:0043284;biopolymer biosynthetic process;0.0192688372488786!GO:0008286;insulin receptor signaling pathway;0.0197072046370421!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0197072046370421!GO:0031529;ruffle organization and biogenesis;0.0198014592718418!GO:0043034;costamere;0.0199276764518484!GO:0030145;manganese ion binding;0.0200324058682985!GO:0006414;translational elongation;0.0203984914634587!GO:0009081;branched chain family amino acid metabolic process;0.0206055211351211!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0207112362138921!GO:0055083;monovalent inorganic anion homeostasis;0.0207112362138921!GO:0055064;chloride ion homeostasis;0.0207112362138921!GO:0030644;cellular chloride ion homeostasis;0.0207112362138921!GO:0046467;membrane lipid biosynthetic process;0.020899568538886!GO:0006693;prostaglandin metabolic process;0.0209974609933616!GO:0006692;prostanoid metabolic process;0.0209974609933616!GO:0009101;glycoprotein biosynthetic process;0.0215040503959431!GO:0030331;estrogen receptor binding;0.0215519769860839!GO:0016779;nucleotidyltransferase activity;0.0216369071046776!GO:0005765;lysosomal membrane;0.0221610423424572!GO:0060090;molecular adaptor activity;0.0221610423424572!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0224676709540496!GO:0065007;biological regulation;0.0226751577605742!GO:0044433;cytoplasmic vesicle part;0.0230295483315931!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0230295483315931!GO:0008022;protein C-terminus binding;0.0230295483315931!GO:0016859;cis-trans isomerase activity;0.0230974111102182!GO:0015631;tubulin binding;0.0232771559231769!GO:0006611;protein export from nucleus;0.0233819491950058!GO:0006839;mitochondrial transport;0.0235744960286114!GO:0043681;protein import into mitochondrion;0.0235879706710943!GO:0016584;nucleosome positioning;0.0247464007309569!GO:0015036;disulfide oxidoreductase activity;0.0250654132304974!GO:0006281;DNA repair;0.025210181352721!GO:0019395;fatty acid oxidation;0.0254089918071332!GO:0030137;COPI-coated vesicle;0.0254602659627061!GO:0030241;muscle thick filament assembly;0.0254602659627061!GO:0031034;myosin filament assembly;0.0254602659627061!GO:0031033;myosin filament assembly or disassembly;0.0254602659627061!GO:0048739;cardiac muscle fiber development;0.0254602659627061!GO:0009967;positive regulation of signal transduction;0.0258667240224727!GO:0000118;histone deacetylase complex;0.0261850647076599!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0268683196009075!GO:0004300;enoyl-CoA hydratase activity;0.0269117666944935!GO:0050681;androgen receptor binding;0.0272073012873856!GO:0051348;negative regulation of transferase activity;0.0274972040812136!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0276221186077669!GO:0046870;cadmium ion binding;0.0279938777939912!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0286140637862187!GO:0030125;clathrin vesicle coat;0.0287572658601848!GO:0030665;clathrin coated vesicle membrane;0.0287572658601848!GO:0044437;vacuolar part;0.0289007577148755!GO:0001516;prostaglandin biosynthetic process;0.0289805965584455!GO:0046457;prostanoid biosynthetic process;0.0289805965584455!GO:0004448;isocitrate dehydrogenase activity;0.0290842757685841!GO:0051540;metal cluster binding;0.029299248839142!GO:0051536;iron-sulfur cluster binding;0.029299248839142!GO:0030140;trans-Golgi network transport vesicle;0.0297709212943556!GO:0004197;cysteine-type endopeptidase activity;0.0304655081274665!GO:0005815;microtubule organizing center;0.0308068867533607!GO:0001558;regulation of cell growth;0.0308883795043077!GO:0006950;response to stress;0.0316391347261552!GO:0008147;structural constituent of bone;0.0318244643429213!GO:0007229;integrin-mediated signaling pathway;0.0319482703114368!GO:0051049;regulation of transport;0.0323495572751234!GO:0051329;interphase of mitotic cell cycle;0.0324330958670218!GO:0051087;chaperone binding;0.0325469767585596!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0325469767585596!GO:0004784;superoxide dismutase activity;0.0325469767585596!GO:0000287;magnesium ion binding;0.032618976262828!GO:0044438;microbody part;0.0329369039121319!GO:0044439;peroxisomal part;0.0329369039121319!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0333635928227443!GO:0046489;phosphoinositide biosynthetic process;0.0344031923959049!GO:0018106;peptidyl-histidine phosphorylation;0.0348065206455496!GO:0065009;regulation of a molecular function;0.03496704071315!GO:0009083;branched chain family amino acid catabolic process;0.0350073576126215!GO:0006672;ceramide metabolic process;0.0365128762998837!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0374653989164439!GO:0051325;interphase;0.0376186562557852!GO:0030833;regulation of actin filament polymerization;0.03853383457364!GO:0035035;histone acetyltransferase binding;0.0388354553403405!GO:0008026;ATP-dependent helicase activity;0.0388957752733665!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0389269673782933!GO:0006486;protein amino acid glycosylation;0.0389604745930658!GO:0004721;phosphoprotein phosphatase activity;0.0391573310242982!GO:0006509;membrane protein ectodomain proteolysis;0.0391573310242982!GO:0033619;membrane protein proteolysis;0.0391573310242982!GO:0031589;cell-substrate adhesion;0.0391573310242982!GO:0003702;RNA polymerase II transcription factor activity;0.0391573310242982!GO:0016405;CoA-ligase activity;0.0402370121547508!GO:0046822;regulation of nucleocytoplasmic transport;0.0405056296359462!GO:0003746;translation elongation factor activity;0.040857331312523!GO:0005070;SH3/SH2 adaptor activity;0.0408875790095568!GO:0000059;protein import into nucleus, docking;0.0409175154725364!GO:0006607;NLS-bearing substrate import into nucleus;0.0409175154725364!GO:0016408;C-acyltransferase activity;0.0409528665478635!GO:0003690;double-stranded DNA binding;0.0412719051370972!GO:0005938;cell cortex;0.0412719051370972!GO:0007033;vacuole organization and biogenesis;0.041395076873752!GO:0016836;hydro-lyase activity;0.041395076873752!GO:0006730;one-carbon compound metabolic process;0.0415339158893962!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0423129447240194!GO:0006006;glucose metabolic process;0.0428764510355134!GO:0004463;leukotriene-A4 hydrolase activity;0.0429293869598992!GO:0004301;epoxide hydrolase activity;0.0429293869598992!GO:0043413;biopolymer glycosylation;0.0434676513221776!GO:0008234;cysteine-type peptidase activity;0.044833122048641!GO:0016581;NuRD complex;0.0458303031654665!GO:0006695;cholesterol biosynthetic process;0.0459171389277894!GO:0005862;muscle thin filament tropomyosin;0.0462602888156887!GO:0005100;Rho GTPase activator activity;0.046323753686739!GO:0005869;dynactin complex;0.0465848142023323!GO:0050811;GABA receptor binding;0.0468003645494581!GO:0032981;mitochondrial respiratory chain complex I assembly;0.047789666698365!GO:0010257;NADH dehydrogenase complex assembly;0.047789666698365!GO:0033108;mitochondrial respiratory chain complex assembly;0.047789666698365!GO:0016126;sterol biosynthetic process;0.0479282001045661!GO:0007160;cell-matrix adhesion;0.0499936770496185
|sample_id=10082
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=colon
|top_motifs=T:2.51685595312;HNF1A:2.26481593453;HNF4A_NR2F1,2:2.250357577;MTF1:2.0195738912;ZEB1:1.91953296919;SNAI1..3:1.84852274963;SP1:1.84577253136;XCPE1{core}:1.76175167433;SRF:1.74757599385;TFCP2:1.68508175726;SPZ1:1.57359607716;NR5A1,2:1.55579684154;LMO2:1.53483768299;TOPORS:1.49783622468;POU5F1:1.46290891293;TBP:1.45110658071;PITX1..3:1.4184334074;MTE{core}:1.40798323771;NR1H4:1.35284587197;FOX{D1,D2}:1.29205223937;TFAP2B:1.28838312091;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.28784347783;TLX1..3_NFIC{dimer}:1.25687624378;TFAP2{A,C}:1.25092547271;PAX6:1.2327377566;ESRRA:1.19624249182;POU2F1..3:1.18822784467;ZNF148:1.17727923005;RBPJ:1.15616570386;HIC1:1.14592288604;NANOG:1.03494054261;FOXP1:1.03283764443;ZNF423:1.02645294274;RREB1:1.02046664225;GTF2I:1.00396864501;GTF2A1,2:0.980642935186;FOX{I1,J2}:0.956708613779;GATA6:0.844032406738;FOX{F1,F2,J1}:0.832078140953;MED-1{core}:0.81118720533;EP300:0.794429569699;MAZ:0.767271777976;MYOD1:0.713541508277;IKZF1:0.70870087801;EGR1..3:0.706653989347;NKX2-3_NKX2-5:0.701618710623;POU6F1:0.691875593798;AR:0.687767001306;FOXO1,3,4:0.682260560319;NR3C1:0.618108813784;PBX1:0.606167802404;MYBL2:0.591395355008;SMAD1..7,9:0.525095171363;TFAP4:0.524394464639;NR6A1:0.502933542953;DBP:0.502600140392;PRDM1:0.486591213311;MYFfamily:0.465315748625;EBF1:0.459766388419;FOXL1:0.450464609935;OCT4_SOX2{dimer}:0.395714964241;HOX{A6,A7,B6,B7}:0.391559109258;BREu{core}:0.383404459749;FOXA2:0.366764446413;ADNP_IRX_SIX_ZHX:0.337438815622;VSX1,2:0.318581320582;ETS1,2:0.31502716122;HMX1:0.306444642366;ATF6:0.302929735368;MEF2{A,B,C,D}:0.292973189174;TLX2:0.280156136797;RXRA_VDR{dimer}:0.277467416833;GCM1,2:0.265429971202;TBX4,5:0.253318970135;SOX5:0.173991680707;PATZ1:0.154184835092;MZF1:0.149043447202;CDC5L:0.138129279489;ZFP161:0.119894501098;GLI1..3:0.119329121332;ONECUT1,2:0.115447294481;IRF7:0.0960507030757;GFI1:0.0408227868217;IKZF2:0.0331382631874;TEAD1:0.0287127560714;NHLH1,2:0.000754137238522;PAX5:-0.00171581083831;GFI1B:-0.00224961827912;ZNF238:-0.0150958148628;LHX3,4:-0.0266514993935;ZBTB6:-0.048649660535;TFDP1:-0.0756399328263;ESR1:-0.0968640647175;NFY{A,B,C}:-0.100438677925;RXR{A,B,G}:-0.105274809441;NKX6-1,2:-0.109280829392;REST:-0.110991005776;KLF4:-0.111111962196;HOX{A5,B5}:-0.124544022987;FOXN1:-0.127341951284;BPTF:-0.130882905334;NFATC1..3:-0.136006083156;HAND1,2:-0.140339065674;SOX{8,9,10}:-0.144318656472;HES1:-0.146431221918;SPIB:-0.186002614465;SOX2:-0.213100016552;E2F1..5:-0.218600598752;ATF2:-0.23764883188;RUNX1..3:-0.24448480543;IRF1,2:-0.262703176711;ARID5B:-0.274681897371;PRRX1,2:-0.288433363263;SPI1:-0.290357738208;JUN:-0.3237922649;XBP1:-0.329526374615;PPARG:-0.336165736697;PAX3,7:-0.347611693732;STAT2,4,6:-0.35363469104;FOXQ1:-0.354685795371;NFKB1_REL_RELA:-0.361133701605;STAT1,3:-0.397666901847;ZNF143:-0.40351361548;GATA4:-0.40368510322;AIRE:-0.408213374305;SREBF1,2:-0.423697154869;TP53:-0.435978738253;HBP1_HMGB_SSRP1_UBTF:-0.439389655977;TGIF1:-0.462539551489;UFEwm:-0.473487680137;PAX2:-0.486116544092;LEF1_TCF7_TCF7L1,2:-0.496545506888;ALX4:-0.497895665455;HLF:-0.504287501831;NFE2:-0.509261322523;GZF1:-0.51161387818;TEF:-0.525588563637;NFIL3:-0.526180213082;AHR_ARNT_ARNT2:-0.526441877874;NKX2-1,4:-0.584191295157;FOS_FOS{B,L1}_JUN{B,D}:-0.59660090697;ELF1,2,4:-0.61139824769;POU1F1:-0.618069617644;NRF1:-0.631678717767;DMAP1_NCOR{1,2}_SMARC:-0.644408999346;SOX17:-0.652102679638;bHLH_family:-0.673818108452;RFX2..5_RFXANK_RFXAP:-0.674265300339;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70418851575;NFIX:-0.705412503483;CUX2:-0.72592366887;FOXM1:-0.728528718402;PDX1:-0.748197016782;FOSL2:-0.770833263982;ATF4:-0.773358768057;ZIC1..3:-0.793490190145;HOXA9_MEIS1:-0.807859562552;FOXD3:-0.810863408889;ATF5_CREB3:-0.860433707422;POU3F1..4:-0.874512711435;BACH2:-0.874876853157;HOX{A4,D4}:-0.904717575626;RFX1:-0.918566849565;CEBPA,B_DDIT3:-0.922026044533;CREB1:-0.940169343407;MAFB:-0.946616981924;RORA:-0.96455138344;PAX1,9:-0.974802370791;NFE2L2:-0.97841711436;NFE2L1:-0.993868912785;ZNF384:-1.12146582292;CDX1,2,4:-1.13244802184;TAL1_TCF{3,4,12}:-1.17868240909;HSF1,2:-1.23540155897;MYB:-1.25454029218;NKX2-2,8:-1.25457263667;YY1:-1.3316841021;ALX1:-1.38399529277;ELK1,4_GABP{A,B1}:-1.454689168;ZBTB16:-1.49005599066;NKX3-2:-1.51820004742;NANOG{mouse}:-1.53731651188;CRX:-1.60892913307;EVI1:-1.74281553679;FOXP3:-1.75507573827;EN1,2:-1.82256649097;NKX3-1:-1.84650952912;HMGA1,2:-1.96153980977;STAT5{A,B}:-1.98324088868;HIF1A:-2.18413068115;PAX4:-2.38014170474;PAX8:-2.45496151008
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10082-102B1;search_select_hide=table117:FF:10082-102B1
}}
}}

Latest revision as of 12:20, 3 June 2020

Name:colon, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11794
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stage23 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-2
catalog numberCat: 636643 Lot: 8101369A-2
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005055
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11794 CAGE DRX008637 DRR009509
Accession ID Hg19

Library idBAMCTSS
CNhs11794 DRZ000934 DRZ002319
Accession ID Hg38

Library idBAMCTSS
CNhs11794 DRZ012284 DRZ013669
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.478
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0549
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.601
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.26
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0876
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall1.144
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.975
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.067
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.221
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.331
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.295
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.1
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.697
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.601
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.3
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11794

Jaspar motifP-value
MA0002.20.243
MA0003.10.236
MA0004.10.151
MA0006.10.113
MA0007.10.24
MA0009.10.947
MA0014.10.852
MA0017.16.02771e-4
MA0018.20.104
MA0019.10.827
MA0024.10.829
MA0025.10.731
MA0027.10.75
MA0028.11.37605e-6
MA0029.10.874
MA0030.10.0302
MA0031.10.0346
MA0035.20.517
MA0038.10.867
MA0039.20.0922
MA0040.10.808
MA0041.10.675
MA0042.10.849
MA0043.10.00554
MA0046.17.634e-29
MA0047.20.00408
MA0048.10.133
MA0050.10.594
MA0051.10.819
MA0052.10.222
MA0055.10.0652
MA0057.10.344
MA0058.10.0178
MA0059.10.00153
MA0060.10.982
MA0061.12.59139e-4
MA0062.25.2035e-8
MA0065.20.421
MA0066.10.0535
MA0067.10.0585
MA0068.10.632
MA0069.10.21
MA0070.10.744
MA0071.10.968
MA0072.10.415
MA0073.10.797
MA0074.10.987
MA0076.11.08291e-7
MA0077.10.761
MA0078.10.0799
MA0079.20.167
MA0080.20.551
MA0081.10.0078
MA0083.11.76002e-5
MA0084.10.455
MA0087.10.591
MA0088.10.223
MA0090.10.404
MA0091.10.555
MA0092.10.723
MA0093.10.105
MA0099.25.91369e-14
MA0100.10.0937
MA0101.10.00137
MA0102.20.133
MA0103.14.39647e-4
MA0104.20.00313
MA0105.11.84141e-7
MA0106.10.0228
MA0107.10.00227
MA0108.24.61607e-13
MA0111.10.948
MA0112.20.933
MA0113.10.994
MA0114.10.00799
MA0115.10.0298
MA0116.10.00566
MA0117.10.0319
MA0119.10.82
MA0122.10.897
MA0124.10.891
MA0125.10.301
MA0131.10.143
MA0135.10.49
MA0136.10.0117
MA0137.20.159
MA0138.20.397
MA0139.10.201
MA0140.10.281
MA0141.10.303
MA0142.10.516
MA0143.10.0492
MA0144.10.461
MA0145.10.0968
MA0146.10.436
MA0147.10.00131
MA0148.10.0332
MA0149.10.424
MA0150.12.65358e-6
MA0152.10.957
MA0153.14.31298e-15
MA0154.10.342
MA0155.10.825
MA0156.14.074e-4
MA0157.10.94
MA0159.10.741
MA0160.10.591
MA0162.10.791
MA0163.17.48786e-5
MA0164.10.49
MA0258.10.729
MA0259.10.0264



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11794

Novel motifP-value
10.28
100.0601
1000.296
1010.698
1020.43
1030.0183
1040.931
1050.0818
1060.621
1070.0347
1080.332
1090.618
110.539
1100.406
1110.157
1120.625
1130.439
1140.108
1150.879
1160.729
1170.0199
1180.298
1190.553
120.484
1200.148
1210.845
1220.962
1230.0395
1240.737
1250.257
1260.95
1270.111
1280.0195
1290.629
130.32
1300.844
1310.352
1320.00479
1330.0363
1340.0124
1350.121
1360.767
1370.104
1380.68
1390.37
140.499
1400.85
1410.282
1420.951
1430.0137
1440.763
1450.14
1460.269
1470.475
1480.91
1490.171
150.184
1500.605
1510.468
1520.186
1530.867
1540.937
1550.73
1560.556
1570.945
1580.379
1590.517
160.429
1600.903
1610.506
1620.0914
1630.927
1640.0701
1650.621
1660.476
1670.217
1680.169
1690.375
170.604
180.00666
190.375
20.0355
200.125
210.313
220.583
230.385
240.375
250.547
260.564
270.438
280.676
290.0511
30.7
300.048
310.711
320.749
330.0885
340.218
350.112
360.0362
370.262
380.416
390.337
40.967
400.627
410.104
420.357
430.76
440.756
450.17
460.461
470.432
480.527
490.777
50.735
500.434
510.805
520.101
530.164
540.711
550.361
560.639
570.263
580.81
590.841
60.654
600.358
610.819
620.848
630.833
640.971
650.286
660.138
670.0757
680.861
690.505
70.978
700.337
710.0781
720.389
730.923
740.426
750.00661
760.0166
770.0327
780.836
790.471
80.973
800.963
810.895
820.494
830.667
840.26
850.403
860.496
870.469
880.872
890.944
90.446
900.00414
910.0798
920.511
930.123
940.0431
950.15
960.444
970.936
980.972
990.0475



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11794


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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