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{{f5samples
{{f5samples
|id=FF:10426-106D3
|DRA_sample_Accession=CAGE@SAMD00005605
|name=epidermoid carcinoma  cell line:A431
|accession_numbers=CAGE;DRX007879;DRR008751;DRZ000176;DRZ001561;DRZ011526;DRZ012911
|sample_id=10426
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000997,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0005056,UBERON:0010317,UBERON:0004176,UBERON:0003100,UBERON:0000474
|rna_tube_id=106D3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
|rna_position=D3
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0100017
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1872
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=85 year old adult
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
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Line 66: Line 40:
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.12226289163117e-254!GO:0043226;organelle;3.8062745397786e-199!GO:0043229;intracellular organelle;1.75798765321573e-198!GO:0043231;intracellular membrane-bound organelle;6.46279625532328e-187!GO:0043227;membrane-bound organelle;6.46279625532328e-187!GO:0005737;cytoplasm;4.90630935483534e-181!GO:0044422;organelle part;5.15191660228305e-147!GO:0044446;intracellular organelle part;2.06308757817699e-145!GO:0044444;cytoplasmic part;3.52472848628662e-107!GO:0032991;macromolecular complex;4.5448709624915e-104!GO:0005634;nucleus;2.79024201476324e-91!GO:0044237;cellular metabolic process;9.62144491590651e-89!GO:0044238;primary metabolic process;1.14735671443655e-88!GO:0043170;macromolecule metabolic process;1.47887228628636e-83!GO:0005515;protein binding;3.07610586308474e-83!GO:0044428;nuclear part;4.16293527431794e-81!GO:0030529;ribonucleoprotein complex;1.38289183441432e-80!GO:0043233;organelle lumen;3.23858538459786e-73!GO:0031974;membrane-enclosed lumen;3.23858538459786e-73!GO:0003723;RNA binding;4.84524505999962e-72!GO:0043234;protein complex;4.74866992914875e-55!GO:0005739;mitochondrion;6.11342837421196e-55!GO:0016043;cellular component organization and biogenesis;5.18852631211821e-51!GO:0043283;biopolymer metabolic process;6.53486773039772e-51!GO:0006412;translation;8.25196081426254e-51!GO:0019538;protein metabolic process;1.16454042090766e-50!GO:0006396;RNA processing;1.88338198984859e-50!GO:0043228;non-membrane-bound organelle;6.25646337317145e-50!GO:0043232;intracellular non-membrane-bound organelle;6.25646337317145e-50!GO:0031981;nuclear lumen;3.39558559973759e-48!GO:0005840;ribosome;1.757692518118e-45!GO:0044267;cellular protein metabolic process;2.94527198626373e-45!GO:0044260;cellular macromolecule metabolic process;1.06513524952462e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.21208174652845e-44!GO:0010467;gene expression;6.85885737884402e-43!GO:0033036;macromolecule localization;6.11394722191657e-42!GO:0016071;mRNA metabolic process;7.83137000321287e-41!GO:0015031;protein transport;2.22413643960355e-40!GO:0003735;structural constituent of ribosome;1.1540639235835e-39!GO:0005829;cytosol;2.8685300807862e-39!GO:0006259;DNA metabolic process;1.5593719512664e-38!GO:0031090;organelle membrane;1.61203423761538e-38!GO:0008104;protein localization;1.4424559489871e-37!GO:0008380;RNA splicing;2.44322906679937e-37!GO:0006996;organelle organization and biogenesis;4.8273002606666e-37!GO:0044249;cellular biosynthetic process;5.06373191102121e-37!GO:0045184;establishment of protein localization;6.63228287804259e-37!GO:0065003;macromolecular complex assembly;3.63278350234756e-36!GO:0009058;biosynthetic process;5.17075312484887e-36!GO:0044429;mitochondrial part;1.29818685294674e-35!GO:0006397;mRNA processing;1.41069324182965e-35!GO:0009059;macromolecule biosynthetic process;1.60350647229852e-35!GO:0033279;ribosomal subunit;2.52252635875998e-35!GO:0007049;cell cycle;2.97562731731111e-35!GO:0031967;organelle envelope;3.79999920234388e-35!GO:0031975;envelope;8.99383587093406e-35!GO:0046907;intracellular transport;2.93018458993815e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.4530787267473e-32!GO:0022607;cellular component assembly;1.09151473398793e-31!GO:0005654;nucleoplasm;2.97182754634569e-31!GO:0006886;intracellular protein transport;6.66241511448319e-29!GO:0000166;nucleotide binding;4.71676967667588e-28!GO:0005681;spliceosome;1.49754497507226e-27!GO:0022402;cell cycle process;4.84158716884655e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.6714928667284e-26!GO:0044451;nucleoplasm part;1.04299448763497e-25!GO:0003676;nucleic acid binding;6.14694767732659e-24!GO:0005694;chromosome;3.18440329490526e-23!GO:0000278;mitotic cell cycle;7.13135167880988e-23!GO:0016462;pyrophosphatase activity;1.77835230889172e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.40955790974589e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.71799692063632e-22!GO:0051649;establishment of cellular localization;5.02348165311294e-22!GO:0051641;cellular localization;5.83179942591592e-22!GO:0017111;nucleoside-triphosphatase activity;6.75356138573272e-22!GO:0006974;response to DNA damage stimulus;8.3690933349326e-22!GO:0044445;cytosolic part;1.29425589181715e-21!GO:0005740;mitochondrial envelope;4.8387659560991e-21!GO:0016874;ligase activity;8.1806838025363e-21!GO:0019866;organelle inner membrane;1.43259301117432e-20!GO:0044427;chromosomal part;3.07874680717074e-20!GO:0032553;ribonucleotide binding;3.41092943824097e-20!GO:0032555;purine ribonucleotide binding;3.41092943824097e-20!GO:0031966;mitochondrial membrane;5.34219446777428e-20!GO:0016070;RNA metabolic process;1.28412618287318e-19!GO:0017076;purine nucleotide binding;1.29098195494179e-19!GO:0022618;protein-RNA complex assembly;1.94000864533444e-19!GO:0006119;oxidative phosphorylation;4.43382340088137e-19!GO:0008134;transcription factor binding;1.11937515739578e-18!GO:0005730;nucleolus;1.578926925306e-18!GO:0005743;mitochondrial inner membrane;2.05393800236582e-18!GO:0015935;small ribosomal subunit;3.7837523424837e-18!GO:0015934;large ribosomal subunit;5.25265021988618e-18!GO:0006512;ubiquitin cycle;6.05546257984245e-18!GO:0051276;chromosome organization and biogenesis;6.07867976826716e-18!GO:0000087;M phase of mitotic cell cycle;7.75087532351277e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.12754640391748e-18!GO:0044265;cellular macromolecule catabolic process;8.70092296081405e-18!GO:0022403;cell cycle phase;9.89529870747747e-18!GO:0006457;protein folding;1.01180186788627e-17!GO:0031980;mitochondrial lumen;1.0833294437603e-17!GO:0005759;mitochondrial matrix;1.0833294437603e-17!GO:0006281;DNA repair;1.23382713938922e-17!GO:0019941;modification-dependent protein catabolic process;1.39796943566335e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.39796943566335e-17!GO:0007067;mitosis;1.46179685421378e-17!GO:0043285;biopolymer catabolic process;2.37283333542469e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.62919939696781e-17!GO:0005524;ATP binding;2.81842313772205e-17!GO:0044257;cellular protein catabolic process;3.03401390541737e-17!GO:0012505;endomembrane system;5.30329839404325e-17!GO:0032559;adenyl ribonucleotide binding;5.30329839404325e-17!GO:0044455;mitochondrial membrane part;6.7014637080043e-17!GO:0006605;protein targeting;2.28269747828056e-16!GO:0048770;pigment granule;2.61884415608841e-16!GO:0042470;melanosome;2.61884415608841e-16!GO:0030554;adenyl nucleotide binding;2.80607007220752e-16!GO:0051301;cell division;5.84002120553184e-16!GO:0012501;programmed cell death;9.72037858886643e-16!GO:0006260;DNA replication;1.00918343245965e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.5534367571468e-15!GO:0000279;M phase;1.58902102299469e-15!GO:0006915;apoptosis;1.81477213649191e-15!GO:0006366;transcription from RNA polymerase II promoter;2.01947187743882e-15!GO:0009719;response to endogenous stimulus;3.31658397253294e-15!GO:0009057;macromolecule catabolic process;3.7152484832543e-15!GO:0008135;translation factor activity, nucleic acid binding;3.73759677441347e-15!GO:0043412;biopolymer modification;4.3145831310454e-15!GO:0005635;nuclear envelope;1.15599661178817e-14!GO:0030163;protein catabolic process;1.16702992429157e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;2.37575074657827e-14!GO:0008219;cell death;2.75680618218053e-14!GO:0016265;death;2.75680618218053e-14!GO:0005783;endoplasmic reticulum;3.5191107113857e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.72409375922075e-14!GO:0000375;RNA splicing, via transesterification reactions;4.72409375922075e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.72409375922075e-14!GO:0042254;ribosome biogenesis and assembly;6.62545952805059e-14!GO:0006323;DNA packaging;1.04116094692084e-13!GO:0051726;regulation of cell cycle;1.07468257234636e-13!GO:0005761;mitochondrial ribosome;1.07468257234636e-13!GO:0000313;organellar ribosome;1.07468257234636e-13!GO:0000074;regulation of progression through cell cycle;1.19840073342069e-13!GO:0006913;nucleocytoplasmic transport;1.43868074859419e-13!GO:0044248;cellular catabolic process;1.66902994187647e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.93096351690971e-13!GO:0006464;protein modification process;3.14489178815961e-13!GO:0005746;mitochondrial respiratory chain;3.24796830261225e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.05375657036583e-13!GO:0051169;nuclear transport;5.2944432716644e-13!GO:0043687;post-translational protein modification;6.27439704491728e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.45963211212798e-13!GO:0016604;nuclear body;7.23548194257151e-13!GO:0031965;nuclear membrane;8.38154664025911e-13!GO:0044453;nuclear membrane part;1.18347414739762e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.19206006741027e-12!GO:0003954;NADH dehydrogenase activity;1.19206006741027e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19206006741027e-12!GO:0051082;unfolded protein binding;1.30755276943256e-12!GO:0016887;ATPase activity;2.92510442441459e-12!GO:0000785;chromatin;3.45514763996478e-12!GO:0006413;translational initiation;5.11124160005928e-12!GO:0042623;ATPase activity, coupled;8.94144673305311e-12!GO:0048523;negative regulation of cellular process;1.02349274212245e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02380672848751e-11!GO:0003743;translation initiation factor activity;1.19910729785624e-11!GO:0005794;Golgi apparatus;1.3276963220393e-11!GO:0003712;transcription cofactor activity;1.3333729480555e-11!GO:0048193;Golgi vesicle transport;1.40776805703821e-11!GO:0006446;regulation of translational initiation;2.24123094114948e-11!GO:0004386;helicase activity;2.57983083839696e-11!GO:0044432;endoplasmic reticulum part;3.70598123878386e-11!GO:0008639;small protein conjugating enzyme activity;4.29788503667769e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.31147141480879e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.37099537834153e-11!GO:0042773;ATP synthesis coupled electron transport;5.37099537834153e-11!GO:0050794;regulation of cellular process;5.62167290767615e-11!GO:0005643;nuclear pore;8.50537131589814e-11!GO:0004842;ubiquitin-protein ligase activity;1.00443902303866e-10!GO:0051186;cofactor metabolic process;1.02908932913396e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.05557105887698e-10!GO:0045271;respiratory chain complex I;1.05557105887698e-10!GO:0005747;mitochondrial respiratory chain complex I;1.05557105887698e-10!GO:0019787;small conjugating protein ligase activity;1.30058689005651e-10!GO:0065004;protein-DNA complex assembly;1.32583912736911e-10!GO:0042981;regulation of apoptosis;1.5925637171387e-10!GO:0043067;regulation of programmed cell death;1.5925637171387e-10!GO:0050657;nucleic acid transport;1.779235608644e-10!GO:0051236;establishment of RNA localization;1.779235608644e-10!GO:0050658;RNA transport;1.779235608644e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.91385522624429e-10!GO:0006403;RNA localization;1.93228310941066e-10!GO:0006333;chromatin assembly or disassembly;2.30810046988925e-10!GO:0006461;protein complex assembly;2.35942277889249e-10!GO:0016607;nuclear speck;2.84427622509473e-10!GO:0006399;tRNA metabolic process;2.85224133893306e-10!GO:0048519;negative regulation of biological process;2.91518841275309e-10!GO:0017038;protein import;3.08146252329232e-10!GO:0016881;acid-amino acid ligase activity;5.70198907564096e-10!GO:0009055;electron carrier activity;5.84805119632203e-10!GO:0051246;regulation of protein metabolic process;9.13548483544373e-10!GO:0016192;vesicle-mediated transport;1.71186698285586e-09!GO:0015630;microtubule cytoskeleton;3.73537092487166e-09!GO:0006732;coenzyme metabolic process;4.04275008915177e-09!GO:0008026;ATP-dependent helicase activity;4.30192533869761e-09!GO:0006364;rRNA processing;5.33989225864105e-09!GO:0016072;rRNA metabolic process;7.25758427702854e-09!GO:0008565;protein transporter activity;7.591853142899e-09!GO:0031324;negative regulation of cellular metabolic process;1.08513326742002e-08!GO:0016568;chromatin modification;1.26556622452056e-08!GO:0005819;spindle;1.35820188954912e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43886048919632e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.49375729877616e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.50369584559642e-08!GO:0046930;pore complex;1.66124084025505e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.66709272182497e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.66709272182497e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.66709272182497e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.7423562769666e-08!GO:0051028;mRNA transport;2.05762467256676e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.31567776058979e-08!GO:0005667;transcription factor complex;2.46700337489668e-08!GO:0065002;intracellular protein transport across a membrane;2.55803314604905e-08!GO:0043038;amino acid activation;2.73796152592759e-08!GO:0006418;tRNA aminoacylation for protein translation;2.73796152592759e-08!GO:0043039;tRNA aminoacylation;2.73796152592759e-08!GO:0043566;structure-specific DNA binding;3.00982990135655e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.23091228920062e-08!GO:0005789;endoplasmic reticulum membrane;3.23091228920062e-08!GO:0032446;protein modification by small protein conjugation;3.39639690332038e-08!GO:0000775;chromosome, pericentric region;3.46065131312873e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.48882029517879e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.76004335640776e-08!GO:0051170;nuclear import;4.84503572149863e-08!GO:0016567;protein ubiquitination;5.48071863550698e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.59208320103661e-08!GO:0003924;GTPase activity;7.03090654111078e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.81772443225184e-08!GO:0006261;DNA-dependent DNA replication;9.10810099667405e-08!GO:0006163;purine nucleotide metabolic process;9.39651383516856e-08!GO:0048475;coated membrane;9.84553227474805e-08!GO:0030117;membrane coat;9.84553227474805e-08!GO:0009259;ribonucleotide metabolic process;1.01473625377415e-07!GO:0016779;nucleotidyltransferase activity;1.05228591872952e-07!GO:0009056;catabolic process;1.1087578082948e-07!GO:0048522;positive regulation of cellular process;1.14021305514597e-07!GO:0051188;cofactor biosynthetic process;1.37575011630041e-07!GO:0006164;purine nucleotide biosynthetic process;1.42439013259312e-07!GO:0006606;protein import into nucleus;1.47780825926263e-07!GO:0043069;negative regulation of programmed cell death;1.52944184208206e-07!GO:0030120;vesicle coat;1.57307695337132e-07!GO:0030662;coated vesicle membrane;1.57307695337132e-07!GO:0015986;ATP synthesis coupled proton transport;1.68705379616662e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.68705379616662e-07!GO:0016787;hydrolase activity;1.97209531723432e-07!GO:0016563;transcription activator activity;2.2473564500124e-07!GO:0007051;spindle organization and biogenesis;2.27326629337677e-07!GO:0009260;ribonucleotide biosynthetic process;2.6261323586614e-07!GO:0043066;negative regulation of apoptosis;3.58321796046807e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.85869399752971e-07!GO:0009892;negative regulation of metabolic process;3.87354064045512e-07!GO:0007005;mitochondrion organization and biogenesis;3.93937256193374e-07!GO:0005813;centrosome;4.0904682121516e-07!GO:0005793;ER-Golgi intermediate compartment;4.38757568460016e-07!GO:0000245;spliceosome assembly;4.80569012068342e-07!GO:0006334;nucleosome assembly;5.49623306684813e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.47527468089482e-07!GO:0009150;purine ribonucleotide metabolic process;6.60848490147952e-07!GO:0031497;chromatin assembly;6.85929073618722e-07!GO:0050789;regulation of biological process;6.86639250254245e-07!GO:0006916;anti-apoptosis;8.05001164080848e-07!GO:0003697;single-stranded DNA binding;8.41256956576068e-07!GO:0005815;microtubule organizing center;8.44688236214384e-07!GO:0005768;endosome;9.52967420187815e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.03762887164819e-06!GO:0009060;aerobic respiration;1.06205962825454e-06!GO:0009108;coenzyme biosynthetic process;1.24830460397122e-06!GO:0003682;chromatin binding;1.65211744349964e-06!GO:0043623;cellular protein complex assembly;1.83439454039616e-06!GO:0019829;cation-transporting ATPase activity;1.95784666900361e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.99663966929604e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.03466043488657e-06!GO:0016481;negative regulation of transcription;2.16493509371099e-06!GO:0004298;threonine endopeptidase activity;2.3202257679221e-06!GO:0016564;transcription repressor activity;2.33033790077588e-06!GO:0006754;ATP biosynthetic process;2.43646438994911e-06!GO:0006753;nucleoside phosphate metabolic process;2.43646438994911e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.46492770036864e-06!GO:0006793;phosphorus metabolic process;2.98024447333775e-06!GO:0006796;phosphate metabolic process;2.98024447333775e-06!GO:0003713;transcription coactivator activity;3.2466646191646e-06!GO:0045786;negative regulation of progression through cell cycle;3.32142222346071e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.14010211645017e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.14010211645017e-06!GO:0009141;nucleoside triphosphate metabolic process;4.45447364935034e-06!GO:0042802;identical protein binding;4.48004939875508e-06!GO:0051427;hormone receptor binding;4.78966615518885e-06!GO:0045333;cellular respiration;4.78966615518885e-06!GO:0005525;GTP binding;4.8123545373382e-06!GO:0000151;ubiquitin ligase complex;5.07159094407988e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43432666068193e-06!GO:0006099;tricarboxylic acid cycle;5.91262169078918e-06!GO:0046356;acetyl-CoA catabolic process;5.91262169078918e-06!GO:0046034;ATP metabolic process;6.46799024599939e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.54051861117432e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.54051861117432e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.58950265922661e-06!GO:0016740;transferase activity;6.76866921547725e-06!GO:0006950;response to stress;7.00805989581246e-06!GO:0006752;group transfer coenzyme metabolic process;7.48865010618052e-06!GO:0035257;nuclear hormone receptor binding;9.39974977569508e-06!GO:0045259;proton-transporting ATP synthase complex;9.40511577970451e-06!GO:0051329;interphase of mitotic cell cycle;1.01301248148091e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02613695898586e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.02613695898586e-05!GO:0003724;RNA helicase activity;1.23713462079762e-05!GO:0005657;replication fork;1.40040121766821e-05!GO:0003899;DNA-directed RNA polymerase activity;1.41515956425646e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.49622826966557e-05!GO:0051168;nuclear export;1.70798945281404e-05!GO:0006084;acetyl-CoA metabolic process;1.8066759536378e-05!GO:0009109;coenzyme catabolic process;2.22463236226045e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32838729710475e-05!GO:0006613;cotranslational protein targeting to membrane;2.35181680462207e-05!GO:0048471;perinuclear region of cytoplasm;2.36943302445647e-05!GO:0003690;double-stranded DNA binding;2.48456918127782e-05!GO:0019222;regulation of metabolic process;2.65479543195676e-05!GO:0016310;phosphorylation;2.89790697329015e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.14892434119145e-05!GO:0007243;protein kinase cascade;3.24630759125749e-05!GO:0051325;interphase;3.25429525256873e-05!GO:0051187;cofactor catabolic process;3.44814531264199e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.67032678011793e-05!GO:0045941;positive regulation of transcription;4.73065559377483e-05!GO:0048518;positive regulation of biological process;5.44134177895528e-05!GO:0005798;Golgi-associated vesicle;5.98014828625727e-05!GO:0006402;mRNA catabolic process;6.2253666780941e-05!GO:0008094;DNA-dependent ATPase activity;6.64247025916659e-05!GO:0031252;leading edge;7.24519211473841e-05!GO:0007264;small GTPase mediated signal transduction;7.24519211473841e-05!GO:0009117;nucleotide metabolic process;7.44759864706661e-05!GO:0009967;positive regulation of signal transduction;8.55099321170649e-05!GO:0032561;guanyl ribonucleotide binding;8.72459561760862e-05!GO:0019001;guanyl nucleotide binding;8.72459561760862e-05!GO:0051052;regulation of DNA metabolic process;9.1952392205285e-05!GO:0000075;cell cycle checkpoint;9.2643035382885e-05!GO:0003714;transcription corepressor activity;9.35314460777258e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000105709939375936!GO:0000315;organellar large ribosomal subunit;0.000105709939375936!GO:0000786;nucleosome;0.000110191573683317!GO:0003729;mRNA binding;0.000119297241245777!GO:0007010;cytoskeleton organization and biogenesis;0.000120094613302787!GO:0044431;Golgi apparatus part;0.000139168739041839!GO:0007052;mitotic spindle organization and biogenesis;0.000139814440457162!GO:0000776;kinetochore;0.000145021968632283!GO:0044440;endosomal part;0.000150928904193749!GO:0010008;endosome membrane;0.000150928904193749!GO:0007059;chromosome segregation;0.00015598183817899!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000156531833455054!GO:0016363;nuclear matrix;0.000163284268556802!GO:0006302;double-strand break repair;0.000163784021261091!GO:0046983;protein dimerization activity;0.000174793788674107!GO:0045454;cell redox homeostasis;0.000177522510980558!GO:0000314;organellar small ribosomal subunit;0.000177522510980558!GO:0005763;mitochondrial small ribosomal subunit;0.000177522510980558!GO:0007088;regulation of mitosis;0.00017907485721464!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000186693125291302!GO:0003702;RNA polymerase II transcription factor activity;0.000189016300760945!GO:0006401;RNA catabolic process;0.000209566496401523!GO:0005856;cytoskeleton;0.000222644968284624!GO:0043021;ribonucleoprotein binding;0.000249308681231821!GO:0006352;transcription initiation;0.000259918605039576!GO:0006417;regulation of translation;0.000275038628091111!GO:0019899;enzyme binding;0.000282297921208234!GO:0005788;endoplasmic reticulum lumen;0.000285327051991371!GO:0008186;RNA-dependent ATPase activity;0.000345112337395031!GO:0006612;protein targeting to membrane;0.000349098192633469!GO:0016251;general RNA polymerase II transcription factor activity;0.000378693329060419!GO:0031988;membrane-bound vesicle;0.000389461428078!GO:0005770;late endosome;0.000392263856468253!GO:0065009;regulation of a molecular function;0.000411194095325531!GO:0016023;cytoplasmic membrane-bound vesicle;0.000518681032972455!GO:0005048;signal sequence binding;0.000565104187644342!GO:0030118;clathrin coat;0.000599263702657749!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000650216010692752!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000663534429036701!GO:0065007;biological regulation;0.000687649638634158!GO:0030867;rough endoplasmic reticulum membrane;0.00072013507948612!GO:0043065;positive regulation of apoptosis;0.00072809268997757!GO:0016491;oxidoreductase activity;0.00075019513490135!GO:0008654;phospholipid biosynthetic process;0.000767807606516601!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000912380496996468!GO:0016853;isomerase activity;0.00091684975539229!GO:0051098;regulation of binding;0.000920784399642894!GO:0048468;cell development;0.000920784399642894!GO:0043068;positive regulation of programmed cell death;0.000934666801439068!GO:0004004;ATP-dependent RNA helicase activity;0.000956452645482411!GO:0005791;rough endoplasmic reticulum;0.000963631929955372!GO:0031326;regulation of cellular biosynthetic process;0.000975736617004597!GO:0045892;negative regulation of transcription, DNA-dependent;0.000979029964192496!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103627782362532!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00108469234893006!GO:0051789;response to protein stimulus;0.00109888630530061!GO:0006986;response to unfolded protein;0.00109888630530061!GO:0030132;clathrin coat of coated pit;0.0011355355606731!GO:0003684;damaged DNA binding;0.00123221619393008!GO:0051252;regulation of RNA metabolic process;0.00125009467095972!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00125009467095972!GO:0009112;nucleobase metabolic process;0.00139183057186138!GO:0008632;apoptotic program;0.00141480177525463!GO:0000139;Golgi membrane;0.00146290804446824!GO:0031323;regulation of cellular metabolic process;0.00152440879329976!GO:0051920;peroxiredoxin activity;0.00155117924027239!GO:0008033;tRNA processing;0.00156693942402682!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00160164275609324!GO:0044452;nucleolar part;0.00160289456452044!GO:0032508;DNA duplex unwinding;0.00161561787425595!GO:0032392;DNA geometric change;0.00161561787425595!GO:0046822;regulation of nucleocytoplasmic transport;0.00171742667596527!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00176850662610066!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00176850662610066!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00176850662610066!GO:0019843;rRNA binding;0.00186657486036106!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00186657486036106!GO:0006405;RNA export from nucleus;0.00190798600348988!GO:0016859;cis-trans isomerase activity;0.00196759530069078!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00197645371857151!GO:0033116;ER-Golgi intermediate compartment membrane;0.00204998391750635!GO:0005684;U2-dependent spliceosome;0.00211562409286452!GO:0005773;vacuole;0.0021502785380148!GO:0003678;DNA helicase activity;0.00215431435337434!GO:0001726;ruffle;0.00217818152718351!GO:0030036;actin cytoskeleton organization and biogenesis;0.00224990408396089!GO:0030133;transport vesicle;0.00230910107143416!GO:0051101;regulation of DNA binding;0.00230910107143416!GO:0046483;heterocycle metabolic process;0.00233817182617615!GO:0005874;microtubule;0.00235684121886238!GO:0006275;regulation of DNA replication;0.00241759519665558!GO:0030658;transport vesicle membrane;0.00242359768661549!GO:0004674;protein serine/threonine kinase activity;0.00242359768661549!GO:0009889;regulation of biosynthetic process;0.00243668358100955!GO:0007017;microtubule-based process;0.00253541447207855!GO:0006268;DNA unwinding during replication;0.00259525377683982!GO:0003711;transcription elongation regulator activity;0.00265974380129522!GO:0005637;nuclear inner membrane;0.00267752387047411!GO:0031982;vesicle;0.00269371048020112!GO:0006310;DNA recombination;0.00270149947994431!GO:0006414;translational elongation;0.00275005367030121!GO:0030119;AP-type membrane coat adaptor complex;0.00275163528140182!GO:0006839;mitochondrial transport;0.00279795600186463!GO:0005885;Arp2/3 protein complex;0.00279795600186463!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302055924861299!GO:0016197;endosome transport;0.00302228312115545!GO:0030031;cell projection biogenesis;0.00306189180310378!GO:0048500;signal recognition particle;0.00306518692591538!GO:0035258;steroid hormone receptor binding;0.00307423237784032!GO:0043488;regulation of mRNA stability;0.00313760149793576!GO:0043487;regulation of RNA stability;0.00313760149793576!GO:0043681;protein import into mitochondrion;0.00316385049481461!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00316526792566077!GO:0030663;COPI coated vesicle membrane;0.0031705774992124!GO:0030126;COPI vesicle coat;0.0031705774992124!GO:0003746;translation elongation factor activity;0.0032421962059412!GO:0043624;cellular protein complex disassembly;0.00332792097571508!GO:0008250;oligosaccharyl transferase complex;0.00334230298662664!GO:0030880;RNA polymerase complex;0.00336403531276213!GO:0008022;protein C-terminus binding;0.00341889840558004!GO:0006383;transcription from RNA polymerase III promoter;0.00346398117672368!GO:0051087;chaperone binding;0.003471943084996!GO:0030131;clathrin adaptor complex;0.00364199449584344!GO:0008361;regulation of cell size;0.00371539985782595!GO:0030521;androgen receptor signaling pathway;0.00378286115654495!GO:0005905;coated pit;0.00402628594723045!GO:0000049;tRNA binding;0.00423441525585176!GO:0032984;macromolecular complex disassembly;0.00424668919263624!GO:0005876;spindle microtubule;0.0043850362891935!GO:0008139;nuclear localization sequence binding;0.00455073070279482!GO:0009116;nucleoside metabolic process;0.00459746738091116!GO:0006611;protein export from nucleus;0.00471840886318303!GO:0031410;cytoplasmic vesicle;0.00483304615578521!GO:0006626;protein targeting to mitochondrion;0.00500145361556996!GO:0042770;DNA damage response, signal transduction;0.00500262276926797!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00502872834802806!GO:0001889;liver development;0.00520612676639992!GO:0000323;lytic vacuole;0.00523213547499122!GO:0005764;lysosome;0.00523213547499122!GO:0016049;cell growth;0.00523213547499122!GO:0000059;protein import into nucleus, docking;0.00527479687525568!GO:0005769;early endosome;0.00539234747975701!GO:0000922;spindle pole;0.00541711154152385!GO:0008312;7S RNA binding;0.00562700783214665!GO:0008283;cell proliferation;0.00563422487249116!GO:0043241;protein complex disassembly;0.00578955150429386!GO:0006270;DNA replication initiation;0.00587692601365583!GO:0001558;regulation of cell growth;0.0058979649543718!GO:0000228;nuclear chromosome;0.006067477156685!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00617988690276648!GO:0006350;transcription;0.00618412943113374!GO:0000082;G1/S transition of mitotic cell cycle;0.00625485252622633!GO:0000792;heterochromatin;0.00632331172281996!GO:0007093;mitotic cell cycle checkpoint;0.00636681980350815!GO:0046966;thyroid hormone receptor binding;0.00661512690473277!GO:0032507;maintenance of cellular protein localization;0.00671615169747203!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00695955408770382!GO:0000428;DNA-directed RNA polymerase complex;0.00695955408770382!GO:0006338;chromatin remodeling;0.00706573349223857!GO:0030660;Golgi-associated vesicle membrane;0.00709968293049162!GO:0015631;tubulin binding;0.00710735640540156!GO:0015980;energy derivation by oxidation of organic compounds;0.00710923052194965!GO:0006607;NLS-bearing substrate import into nucleus;0.00721035639300327!GO:0009893;positive regulation of metabolic process;0.00721035639300327!GO:0031968;organelle outer membrane;0.00728537666168523!GO:0030137;COPI-coated vesicle;0.00762205009322716!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00777093378154122!GO:0031072;heat shock protein binding;0.00777093378154122!GO:0004527;exonuclease activity;0.0080701814704176!GO:0030029;actin filament-based process;0.00829236886117329!GO:0050662;coenzyme binding;0.00843588489476829!GO:0006979;response to oxidative stress;0.00845242400171588!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00845242400171588!GO:0045047;protein targeting to ER;0.00845242400171588!GO:0019867;outer membrane;0.00852252861374818!GO:0007006;mitochondrial membrane organization and biogenesis;0.00864061439745443!GO:0006091;generation of precursor metabolites and energy;0.00870707655527398!GO:0005669;transcription factor TFIID complex;0.00888679131309349!GO:0030134;ER to Golgi transport vesicle;0.00909780420838593!GO:0006144;purine base metabolic process;0.00913823530620051!GO:0030125;clathrin vesicle coat;0.00961123328948149!GO:0030665;clathrin coated vesicle membrane;0.00961123328948149!GO:0008601;protein phosphatase type 2A regulator activity;0.00964246920469809!GO:0031124;mRNA 3'-end processing;0.00964746460502856!GO:0006284;base-excision repair;0.00994491074609716!GO:0004576;oligosaccharyl transferase activity;0.00994491074609716!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0100891846706624!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0100891846706624!GO:0016044;membrane organization and biogenesis;0.0102870015388984!GO:0008234;cysteine-type peptidase activity;0.0103435980652158!GO:0009165;nucleotide biosynthetic process;0.0104071284415878!GO:0046489;phosphoinositide biosynthetic process;0.0104972367191653!GO:0008637;apoptotic mitochondrial changes;0.0105193356985557!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0105213068218522!GO:0015399;primary active transmembrane transporter activity;0.0105213068218522!GO:0043022;ribosome binding;0.0105695955567953!GO:0046982;protein heterodimerization activity;0.01087515489771!GO:0005741;mitochondrial outer membrane;0.0109146575924274!GO:0048037;cofactor binding;0.0109951181968173!GO:0000159;protein phosphatase type 2A complex;0.0110645273919012!GO:0006376;mRNA splice site selection;0.0112394655732776!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0112394655732776!GO:0031625;ubiquitin protein ligase binding;0.0112394655732776!GO:0018196;peptidyl-asparagine modification;0.0112394655732776!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0112394655732776!GO:0030127;COPII vesicle coat;0.0117247312575483!GO:0012507;ER to Golgi transport vesicle membrane;0.0117247312575483!GO:0016584;nucleosome positioning;0.0118633492135617!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.011949977649169!GO:0007346;regulation of progression through mitotic cell cycle;0.012121094007777!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0121947873522346!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0121947873522346!GO:0016272;prefoldin complex;0.0122729343671973!GO:0032200;telomere organization and biogenesis;0.012442715200356!GO:0000723;telomere maintenance;0.012442715200356!GO:0031325;positive regulation of cellular metabolic process;0.0125222247775526!GO:0008629;induction of apoptosis by intracellular signals;0.0125934096874741!GO:0031529;ruffle organization and biogenesis;0.0130670450001035!GO:0048487;beta-tubulin binding;0.0131131431601322!GO:0006520;amino acid metabolic process;0.0132969223991456!GO:0050790;regulation of catalytic activity;0.0133740725387873!GO:0016791;phosphoric monoester hydrolase activity;0.0138746122596465!GO:0050681;androgen receptor binding;0.0144669792300424!GO:0030518;steroid hormone receptor signaling pathway;0.0147648695352484!GO:0051651;maintenance of cellular localization;0.01484654650242!GO:0030027;lamellipodium;0.0148678889523716!GO:0006289;nucleotide-excision repair;0.0151299333506748!GO:0043596;nuclear replication fork;0.015555383991746!GO:0017166;vinculin binding;0.0155952889168653!GO:0010468;regulation of gene expression;0.0155952889168653!GO:0030176;integral to endoplasmic reticulum membrane;0.0160415989494992!GO:0006213;pyrimidine nucleoside metabolic process;0.0162461896851376!GO:0008092;cytoskeletal protein binding;0.0162562311385251!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.016651530719972!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0169115110354441!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0169396291463072!GO:0006354;RNA elongation;0.0169566622196392!GO:0005862;muscle thin filament tropomyosin;0.0176091958723447!GO:0042393;histone binding;0.0176091958723447!GO:0043414;biopolymer methylation;0.0185548549420793!GO:0051540;metal cluster binding;0.0189660909704932!GO:0051536;iron-sulfur cluster binding;0.0189660909704932!GO:0005832;chaperonin-containing T-complex;0.0189741649034068!GO:0006595;polyamine metabolic process;0.0192486439824824!GO:0006818;hydrogen transport;0.0193122648589976!GO:0015992;proton transport;0.0195930474341264!GO:0000096;sulfur amino acid metabolic process;0.0198088966147915!GO:0004518;nuclease activity;0.0198469065193167!GO:0022411;cellular component disassembly;0.0199128274931885!GO:0008168;methyltransferase activity;0.0201610314044301!GO:0000339;RNA cap binding;0.0203390150408876!GO:0045334;clathrin-coated endocytic vesicle;0.0204855768583385!GO:0019752;carboxylic acid metabolic process;0.0204977572123834!GO:0051287;NAD binding;0.0205448553805522!GO:0046467;membrane lipid biosynthetic process;0.0213126091578192!GO:0006509;membrane protein ectodomain proteolysis;0.0213729438946579!GO:0033619;membrane protein proteolysis;0.0213729438946579!GO:0007021;tubulin folding;0.0214048695309464!GO:0007242;intracellular signaling cascade;0.021681907014767!GO:0046474;glycerophospholipid biosynthetic process;0.0217567263567151!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0219579060291905!GO:0016741;transferase activity, transferring one-carbon groups;0.0219892470736083!GO:0006360;transcription from RNA polymerase I promoter;0.0222516954714319!GO:0006082;organic acid metabolic process;0.0227772560251333!GO:0048146;positive regulation of fibroblast proliferation;0.0227772560251333!GO:0022415;viral reproductive process;0.0235493208717084!GO:0000209;protein polyubiquitination;0.0235493208717084!GO:0006892;post-Golgi vesicle-mediated transport;0.0235968794516311!GO:0007050;cell cycle arrest;0.024196498652808!GO:0051223;regulation of protein transport;0.0242982945496395!GO:0009119;ribonucleoside metabolic process;0.0251484510454109!GO:0006984;ER-nuclear signaling pathway;0.0251605165107219!GO:0005149;interleukin-1 receptor binding;0.0251605165107219!GO:0003756;protein disulfide isomerase activity;0.0254000076912217!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0254000076912217!GO:0043189;H4/H2A histone acetyltransferase complex;0.0257681969054287!GO:0008538;proteasome activator activity;0.0259537633556177!GO:0009303;rRNA transcription;0.0260705579689741!GO:0001836;release of cytochrome c from mitochondria;0.026215823303479!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0264607718127542!GO:0015002;heme-copper terminal oxidase activity;0.0264607718127542!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0264607718127542!GO:0004129;cytochrome-c oxidase activity;0.0264607718127542!GO:0047485;protein N-terminus binding;0.0266074535773143!GO:0042026;protein refolding;0.0269342244234746!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0273148109111355!GO:0043601;nuclear replisome;0.0276707195359775!GO:0030894;replisome;0.0276707195359775!GO:0000123;histone acetyltransferase complex;0.0293131238350075!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.030133604785404!GO:0008652;amino acid biosynthetic process;0.0304284582570142!GO:0048144;fibroblast proliferation;0.0304284582570142!GO:0048145;regulation of fibroblast proliferation;0.0304284582570142!GO:0006917;induction of apoptosis;0.0304628192453675!GO:0016311;dephosphorylation;0.0305776442659524!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309273968556479!GO:0043492;ATPase activity, coupled to movement of substances;0.0319498570881585!GO:0007265;Ras protein signal transduction;0.0326402258295905!GO:0006378;mRNA polyadenylation;0.0329849732342065!GO:0000819;sister chromatid segregation;0.0332601708188058!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0334856897372572!GO:0032259;methylation;0.0337635883733423!GO:0008097;5S rRNA binding;0.033962708446863!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0342290399591588!GO:0000790;nuclear chromatin;0.0342883289856257!GO:0000781;chromosome, telomeric region;0.0346955629104809!GO:0030032;lamellipodium biogenesis;0.0346955629104809!GO:0045792;negative regulation of cell size;0.0349828079267338!GO:0035267;NuA4 histone acetyltransferase complex;0.0353483492057471!GO:0030128;clathrin coat of endocytic vesicle;0.0355135999776816!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0355135999776816!GO:0030122;AP-2 adaptor complex;0.0355135999776816!GO:0030100;regulation of endocytosis;0.0355135999776816!GO:0030384;phosphoinositide metabolic process;0.0357207867655776!GO:0008426;protein kinase C inhibitor activity;0.0358866717191612!GO:0022890;inorganic cation transmembrane transporter activity;0.0359907920193305!GO:0000725;recombinational repair;0.0362062611632789!GO:0000724;double-strand break repair via homologous recombination;0.0362062611632789!GO:0031123;RNA 3'-end processing;0.0365533758324338!GO:0008047;enzyme activator activity;0.0369859160139204!GO:0000070;mitotic sister chromatid segregation;0.0385958122324452!GO:0051235;maintenance of localization;0.0386101121872596!GO:0006650;glycerophospholipid metabolic process;0.0386181114612191!GO:0012502;induction of programmed cell death;0.0386205766021071!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0388582665065243!GO:0000178;exosome (RNase complex);0.0389307429776573!GO:0006730;one-carbon compound metabolic process;0.0392985476005021!GO:0004710;MAP/ERK kinase kinase activity;0.0401080551611125!GO:0008243;plasminogen activator activity;0.041226311765385!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0412591442254099!GO:0016126;sterol biosynthetic process;0.0414598587968269!GO:0040008;regulation of growth;0.0416007894566275!GO:0000152;nuclear ubiquitin ligase complex;0.0416007894566275!GO:0008287;protein serine/threonine phosphatase complex;0.041684498632849!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.041684498632849!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0419420067615079!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0419420067615079!GO:0051338;regulation of transferase activity;0.04228895732654!GO:0045947;negative regulation of translational initiation;0.04228895732654!GO:0009081;branched chain family amino acid metabolic process;0.0426554979893915!GO:0051053;negative regulation of DNA metabolic process;0.0427965029933918!GO:0004003;ATP-dependent DNA helicase activity;0.0430729396873944!GO:0030308;negative regulation of cell growth;0.0430729396873944!GO:0044450;microtubule organizing center part;0.0433694601999194!GO:0006564;L-serine biosynthetic process;0.0434514214252553!GO:0051539;4 iron, 4 sulfur cluster binding;0.0446462099277674!GO:0019783;small conjugating protein-specific protease activity;0.0451280581525386!GO:0035035;histone acetyltransferase binding;0.0452771579228053!GO:0006506;GPI anchor biosynthetic process;0.0453180681166658!GO:0004239;methionyl aminopeptidase activity;0.0454505005159534!GO:0033157;regulation of intracellular protein transport;0.0456866019665814!GO:0042306;regulation of protein import into nucleus;0.0456866019665814!GO:0008536;Ran GTPase binding;0.0458848519508602!GO:0008180;signalosome;0.0463293436396227!GO:0031371;ubiquitin conjugating enzyme complex;0.0466923402006565!GO:0004680;casein kinase activity;0.0467781911322582!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0473458795205896!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0475425042728752!GO:0000118;histone deacetylase complex;0.0476098208149778!GO:0005784;translocon complex;0.0476702809009355!GO:0008610;lipid biosynthetic process;0.0477775302771483!GO:0007004;telomere maintenance via telomerase;0.0482079559692204!GO:0006672;ceramide metabolic process;0.04860721242214!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0487031143933964!GO:0046112;nucleobase biosynthetic process;0.0487752330720054!GO:0043154;negative regulation of caspase activity;0.0488474664071101!GO:0030659;cytoplasmic vesicle membrane;0.0493880021359218!GO:0051128;regulation of cellular component organization and biogenesis;0.0495087798582193!GO:0030522;intracellular receptor-mediated signaling pathway;0.0496712308284018
|sample_id=10426
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=vulva
|top_motifs=SNAI1..3:1.85527433538;ZEB1:1.74254348003;TBX4,5:1.69212043202;VSX1,2:1.5418234101;TFDP1:1.41410643605;TP53:1.39041472974;ZNF148:1.36352010666;NKX2-3_NKX2-5:1.28396798883;RBPJ:1.2670376809;SP1:1.1638753479;PITX1..3:1.15220608505;IRF7:1.14037271817;NKX2-1,4:1.1130303964;E2F1..5:1.08138405598;POU2F1..3:0.989697279776;ADNP_IRX_SIX_ZHX:0.96694214988;GLI1..3:0.925620185079;FOXN1:0.841328594167;XCPE1{core}:0.838050289909;MYOD1:0.825258239863;POU1F1:0.813692444508;FOS_FOS{B,L1}_JUN{B,D}:0.741329530698;CEBPA,B_DDIT3:0.692430441168;TFCP2:0.672781868457;TBP:0.646273104715;NFY{A,B,C}:0.634867332438;FOXQ1:0.622121387118;FOX{I1,J2}:0.620629622563;ONECUT1,2:0.559410496516;TEAD1:0.555484285;NFE2:0.543305103323;NFIL3:0.520030230519;HSF1,2:0.51317997753;FOX{F1,F2,J1}:0.506985184652;TFAP2{A,C}:0.481351798695;BACH2:0.462411802165;POU5F1:0.408607145104;OCT4_SOX2{dimer}:0.408260491508;IKZF1:0.402554221137;ELK1,4_GABP{A,B1}:0.385708531684;FOSL2:0.371758984305;FOXA2:0.367838335865;FOXP1:0.36403996072;bHLH_family:0.349526736904;PPARG:0.348349944277;HOX{A5,B5}:0.326706261257;POU6F1:0.312854430885;MAZ:0.307960106543;STAT5{A,B}:0.304844055773;CDC5L:0.303200783591;ZNF143:0.302860721686;HOX{A6,A7,B6,B7}:0.289507312226;SOX17:0.279206584993;TLX2:0.273703583852;NANOG:0.253611550229;PAX8:0.24337422701;FOXL1:0.239981666081;NR6A1:0.229662716543;MED-1{core}:0.227060301415;ATF5_CREB3:0.216440026952;MYB:0.209823578848;HAND1,2:0.189344173148;HIF1A:0.183457901705;ARID5B:0.183073287362;NKX6-1,2:0.149576064738;NR5A1,2:0.145667247169;ZNF423:0.115012945136;EN1,2:0.108168428602;PAX2:0.090743608584;PAX1,9:0.0866342594881;IRF1,2:0.0676918144675;NFKB1_REL_RELA:0.0613917332169;CRX:0.0550505698076;RFX2..5_RFXANK_RFXAP:0.0505375898033;FOX{D1,D2}:0.0478534660634;PDX1:0.0417954239831;HLF:0.0292829530956;NRF1:0.0276566272016;RFX1:0.0271254203194;TLX1..3_NFIC{dimer}:0.017906806445;YY1:0.00136843578372;PBX1:-0.00762038446172;T:-0.0157101894292;GFI1B:-0.0285011409774;TFAP2B:-0.0307600387294;ELF1,2,4:-0.0365622721678;POU3F1..4:-0.0379332688208;GFI1:-0.0607230102808;HOXA9_MEIS1:-0.0623559886993;HNF4A_NR2F1,2:-0.0808005015115;MTF1:-0.0984532183735;BREu{core}:-0.100061169763;HOX{A4,D4}:-0.100865118726;PAX4:-0.108868024801;SRF:-0.109141259238;MTE{core}:-0.110265546741;AR:-0.114424230856;PAX3,7:-0.119452343605;FOXM1:-0.128664934396;SOX2:-0.138112722046;RREB1:-0.138585060395;EGR1..3:-0.139337150356;ATF4:-0.140156800345;SOX{8,9,10}:-0.14449362172;TOPORS:-0.150154091417;ATF2:-0.153724647156;NFIX:-0.161397776167;FOXO1,3,4:-0.191390515142;STAT2,4,6:-0.193404862021;LMO2:-0.21350502922;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215557366323;GATA6:-0.226682495152;HNF1A:-0.2392222906;HBP1_HMGB_SSRP1_UBTF:-0.241138807469;EBF1:-0.254857067544;ZBTB6:-0.262422975517;TEF:-0.271016477073;JUN:-0.274354994513;MEF2{A,B,C,D}:-0.275807693751;NKX2-2,8:-0.276826662245;LEF1_TCF7_TCF7L1,2:-0.280900274867;GTF2A1,2:-0.289605925114;GTF2I:-0.294157280165;BPTF:-0.295196622101;ZNF384:-0.297425182796;PAX6:-0.324415415162;NFE2L2:-0.334119887165;NKX3-2:-0.357580610505;ZFP161:-0.35795699032;ALX4:-0.364503597545;AHR_ARNT_ARNT2:-0.368520519573;DBP:-0.369400791635;SPIB:-0.37431783061;HIC1:-0.374449967135;CUX2:-0.432760023942;MYBL2:-0.445342262707;SPI1:-0.448040892295;EP300:-0.448928062556;KLF4:-0.456541529892;DMAP1_NCOR{1,2}_SMARC:-0.458271256712;FOXD3:-0.459961113575;CREB1:-0.462613973419;HES1:-0.4682983199;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.473172552406;ETS1,2:-0.491229310075;GZF1:-0.494078909084;ZIC1..3:-0.524600700457;LHX3,4:-0.547695142977;PRRX1,2:-0.554980923643;SOX5:-0.566761222987;MAFB:-0.576802939544;ESRRA:-0.592241778141;CDX1,2,4:-0.6015929;RUNX1..3:-0.618129575305;SMAD1..7,9:-0.642385473127;NKX3-1:-0.659649164236;ZBTB16:-0.660166917021;PRDM1:-0.672699679838;UFEwm:-0.684483465822;NR3C1:-0.706399759054;AIRE:-0.75466182762;NHLH1,2:-0.76947065259;PATZ1:-0.775304339014;FOXP3:-0.787788669285;ZNF238:-0.788479193163;GATA4:-0.789945032388;HMGA1,2:-0.816425237179;RORA:-0.841485739428;REST:-0.841966461012;TAL1_TCF{3,4,12}:-0.863495269237;EVI1:-0.867170482893;SREBF1,2:-0.874704652322;GCM1,2:-0.892939481628;MZF1:-0.893821162241;MYFfamily:-0.903218034422;NR1H4:-0.926552165473;ESR1:-0.94294693694;PAX5:-0.945944937453;TGIF1:-0.956779472654;XBP1:-0.982738338379;ATF6:-0.989980919965;IKZF2:-1.01766893072;NFATC1..3:-1.05009605359;SPZ1:-1.10747780386;TFAP4:-1.11485045485;ALX1:-1.1389617956;RXR{A,B,G}:-1.22198802286;RXRA_VDR{dimer}:-1.26263588443;STAT1,3:-1.30576657873;NANOG{mouse}:-1.35913719189;NFE2L1:-1.38922448718;HMX1:-1.71332960494
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10426-106D3;search_select_hide=table117:FF:10426-106D3
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:epidermoid carcinoma cell line:A431
Species:Human (Homo sapiens)
Library ID:CNhs10743
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuevulva
dev stage85 year old adult
sexfemale
age85
cell typeunclassifiable
cell lineA431
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005605
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10743 CAGE DRX007879 DRR008751
Accession ID Hg19

Library idBAMCTSS
CNhs10743 DRZ000176 DRZ001561
Accession ID Hg38

Library idBAMCTSS
CNhs10743 DRZ011526 DRZ012911
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00591
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.545
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0421
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0406
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0.0406
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.144
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0406
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.961
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.244
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.04
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-1.175183e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.144
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.112
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00258
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0406
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.423
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0031
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0406
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0409
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10743

Jaspar motifP-value
MA0002.20.0331
MA0003.10.466
MA0004.10.607
MA0006.10.0998
MA0007.10.196
MA0009.10.227
MA0014.10.0961
MA0017.10.884
MA0018.20.704
MA0019.10.548
MA0024.11.30272e-5
MA0025.10.0102
MA0027.10.971
MA0028.10.222
MA0029.10.545
MA0030.10.00928
MA0031.10.105
MA0035.20.0589
MA0038.10.184
MA0039.22.41552e-4
MA0040.10.179
MA0041.10.849
MA0042.10.953
MA0043.10.505
MA0046.10.267
MA0047.20.105
MA0048.10.251
MA0050.11.22104e-4
MA0051.15.47206e-4
MA0052.10.435
MA0055.15.90627e-5
MA0057.10.185
MA0058.10.199
MA0059.10.184
MA0060.13.73957e-5
MA0061.10.838
MA0062.20.465
MA0065.20.381
MA0066.10.369
MA0067.10.445
MA0068.10.704
MA0069.10.793
MA0070.10.721
MA0071.10.372
MA0072.10.371
MA0073.10.745
MA0074.10.208
MA0076.10.42
MA0077.10.26
MA0078.10.765
MA0079.20.308
MA0080.20.00112
MA0081.10.135
MA0083.10.317
MA0084.10.07
MA0087.10.52
MA0088.10.822
MA0090.10.0392
MA0091.17.81161e-4
MA0092.10.207
MA0093.10.575
MA0099.29.18333e-13
MA0100.10.916
MA0101.10.293
MA0102.20.826
MA0103.12.04008e-7
MA0104.20.671
MA0105.10.0809
MA0106.16.35795e-4
MA0107.10.344
MA0108.20.0398
MA0111.10.627
MA0112.20.489
MA0113.10.66
MA0114.10.408
MA0115.10.581
MA0116.10.298
MA0117.10.439
MA0119.10.803
MA0122.10.87
MA0124.10.682
MA0125.10.0325
MA0131.10.55
MA0135.10.0861
MA0136.10.139
MA0137.20.859
MA0138.20.0336
MA0139.10.973
MA0140.10.485
MA0141.10.116
MA0142.10.0784
MA0143.10.92
MA0144.10.511
MA0145.10.228
MA0146.10.15
MA0147.10.537
MA0148.10.00959
MA0149.10.138
MA0150.10.414
MA0152.10.677
MA0153.10.613
MA0154.10.223
MA0155.10.37
MA0156.10.913
MA0157.10.462
MA0159.10.307
MA0160.10.776
MA0162.10.886
MA0163.10.0588
MA0164.10.591
MA0258.10.28
MA0259.10.69



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10743

Novel motifP-value
10.922
100.551
1000.665
1010.446
1020.397
1030.423
1040.607
1050.23
1060.891
1070.422
1080.898
1090.00855
110.305
1100.645
1110.574
1120.482
1130.197
1140.207
1150.846
1160.0476
1170.456
1180.72
1190.309
120.807
1200.995
1210.399
1220.188
1230.782
1240.0764
1250.34
1260.996
1270.68
1280.288
1290.643
130.00429
1300.467
1310.588
1320.935
1330.0101
1340.28
1350.0104
1360.0237
1370.127
1380.878
1390.00253
140.771
1400.0569
1410.912
1420.487
1430.0117
1440.133
1450.863
1460.566
1470.674
1480.258
1490.045
150.373
1500.251
1510.888
1520.116
1530.873
1540.605
1550.732
1560.802
1570.853
1580.494
1590.836
160.807
1600.631
1610.95
1620.613
1630.796
1640.997
1650.941
1660.374
1670.572
1680.498
1690.222
170.372
180.295
190.0665
20.979
200.189
210.82
220.75
230.538
240.117
250.773
260.673
270.415
280.289
290.587
30.789
300.207
310.16
320.00151
330.227
340.58
350.00265
360.984
370.514
380.662
390.694
40.777
400.185
410.131
420.592
430.262
440.652
450.324
460.501
470.689
480.822
490.109
50.349
500.161
510.816
520.305
530.809
540.905
550.852
560.864
570.715
580.881
590.748
60.312
600.352
610.597
620.408
630.589
640.968
650.333
660.0574
670.713
680.0401
690.597
70.487
700.571
710.558
720.986
730.161
740.00309
750.325
760.814
770.826
780.103
791.43895e-4
80.468
800.167
810.0249
820.00232
830.887
840.962
850.0607
860.432
870.025
880.841
890.564
90.353
900.0478
910.0307
920.113
930.663
940.0433
950.106
960.114
970.655
980.144
990.345



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10743


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000997 (mammalian vulva)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0005056 (external female genitalia)
0010317 (germ layer / neural crest derived structure)
0004176 (external genitalia)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100017 (A-431 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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