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{{f5samples
{{f5samples
|id=FF:10639-108I9
|DRA_sample_Accession=CAGE@SAMD00005011
|name=serous adenocarcinoma cell line:JHOS-2
|accession_numbers=CAGE;DRX007998;DRR008870;DRZ000295;DRZ001680;DRZ011645;DRZ013030
|sample_id=10639
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|rna_tube_id=108I9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
|rna_box=108
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001
|rna_position=I9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103803,FF:0100297,FF:0101120,FF:0100167,FF:0100658,FF:0101555
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1521
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr1:201979703..201979721,+!p2@ELF3!2.40!247.66!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.17!147.54!ELF3;;chr2:114036488..114036504,-!p1@PAX8!2.15!141.36!PAX8;;chr6:126240380..126240430,+!p2@NCOA7!1.90!197.26!NCOA7;;chr11:34642612..34642646,+!p1@EHF!1.73!53.15!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.62!51.09!TFAP2C;;chr6:126240442..126240459,+!p4@NCOA7!1.60!49.26!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.53!40.32!NCOA7;;chr3:111314186..111314204,-!p1@ZBED2!1.52!32.30!ZBED2;;chr8:55370487..55370503,+!p1@SOX17!1.52!32.07!SOX17;;chr12:52445218..52445237,+!p1@NR4A1!1.49!358.78!NR4A1;;chr19:36391434..36391450,-!p1@NFKBID!1.34!40.09!NFKBID;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.16!FOXJ1;;chr13:73633131..73633149,+!p1@KLF5!1.28!186.26!KLF5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.10!ZBED1;;chr6:126240463..126240489,+!p6@NCOA7!1.24!18.56!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.56!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.24!16.27!GRHL2;;chr19:53496768..53496799,-!p1@ZNF702P!1.20!22.91!ZNF702P;;chr10:64576105..64576133,-!p1@EGR2!1.16!27.72!EGR2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.70!NFATC2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.54!TFAP2A;;chr3:101546827..101546847,+!p2@NFKBIZ!1.14!17.87!NFKBIZ;;chr9:102584159..102584174,+!p2@NR4A3!1.10!21.08!NR4A3;;chr15:67418047..67418093,+!p4@SMAD3!1.09!14.20!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.09!11.23!FOXA1;;chr15:67418177..67418204,+!p9@SMAD3!1.08!11.00!SMAD3;;chr1:212782094..212782109,+!p1@ATF3!1.07!290.74!ATF3;;chr19:45971246..45971265,+!p1@FOSB!1.07!200.70!FOSB;;chr22:38598086..38598105,+!p1@MAFF!1.05!109.74!MAFF;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.91!HEY2;;chr12:57914286..57914304,-!p1@DDIT3!1.04!369.55!DDIT3;;chr17:70117153..70117174,+!p1@SOX9!1.03!100.81!SOX9;;chr6:19837592..19837621,+!p1@ID4!1.03!60.94!ID4;;chr1:37940170..37940190,+!p1@ZC3H12A!1.02!119.14!ZC3H12A;;chr6:28048343..28048354,+!p1@ZNF165!1.02!9.39!ZNF165;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.39!EMX2;;chr6:152126790..152126828,+!p3@ESR1!0.99!8.71!ESR1;;chr8:22550982..22550999,-!p1@EGR3!0.98!24.74!EGR3;;chr3:24536253..24536328,-!p1@THRB!0.98!16.27!THRB;;chr6:10415484..10415508,-!p3@TFAP2A!0.98!8.48!TFAP2A;;chr14:35872962..35873025,-!p3@NFKBIA!0.96!20.85!NFKBIA;;chr6:91006518..91006570,-!p1@BACH2!0.96!19.02!BACH2;;chr15:67418119..67418162,+!p5@SMAD3!0.92!8.25!SMAD3;;chr2:10091815..10091864,+!p1@GRHL1!0.90!9.39!GRHL1;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.85!ZNF860;;chr11:65667884..65667895,-!p2@FOSL1!0.88!27.03!FOSL1;;chr1:935398..935465,-!p2@HES4!0.88!14.20!HES4;;chr20:51588873..51588953,+!p1@TSHZ2!0.88!8.94!TSHZ2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.64!TBX20;;chr2:157189180..157189290,-!p1@NR4A2!0.87!35.28!NR4A2;;chr12:26277817..26277863,-!p2@BHLHE41!0.86!8.71!BHLHE41;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.79!TFAP2A;;chr13:73636516..73636532,+!p3@KLF5!0.86!7.10!KLF5;;chr10:119302508..119302559,+!p5@EMX2!0.86!6.19!EMX2;;chr19:22817119..22817145,+!p1@ZNF492!0.83!9.85!ZNF492;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.12!ZBTB20;;chr12:26277956..26277980,-!p1@BHLHE41!0.82!21.31!BHLHE41;;chr9:102584128..102584144,+!p3@NR4A3!0.82!11.23!NR4A3;;chr3:193853927..193853944,+!p1@HES1!0.81!193.37!HES1;;chr3:39195037..39195069,-!p2@CSRNP1!0.81!36.20!CSRNP1;;chr22:38598057..38598071,+!p3@MAFF!0.81!13.52!MAFF;;chr9:102584262..102584276,+!p1@NR4A3!0.81!12.83!NR4A3;;chr13:73636252..73636307,+!p2@KLF5!0.81!6.41!KLF5;;chr12:53625966..53626012,-!p2@RARG!0.80!15.12!RARG;;chr14:35872453..35872485,-!p2@NFKBIA!0.80!13.98!NFKBIA;;chr2:166326200..166326216,+!p1@CSRNP3!0.80!8.02!CSRNP3;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!361.99!NFKBIA;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.83!ZFHX4;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.60!ETV4;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.89!DLX2;;chr12:52431016..52431071,+!p4@NR4A1!0.79!6.19!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!0.78!17.64!ZMAT1;;chr6:1312325..1312340,+!p1@FOXQ1!0.78!8.48!FOXQ1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.04!DLX3;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.40!ARID5B;;chr9:110252035..110252057,-!p1@KLF4!0.76!83.62!KLF4;;chr2:66662281..66662308,+!p1@MEIS1!0.76!17.87!MEIS1;;chr2:113982635..113982648,-!p8@PAX8!0.76!4.81!PAX8;;chr10:119302232..119302265,+!p1@EMX2!0.76!4.81!EMX2;;chr11:65554528..65554546,+!p1@OVOL1!0.76!4.81!OVOL1;;chr8:77593448..77593471,+!p2@ZFHX4!0.76!4.81!ZFHX4;;chr3:39195075..39195088,-!p1@CSRNP1!0.75!31.62!CSRNP1;;chr22:38597987..38598021,+!p2@MAFF!0.75!31.16!MAFF;;chr6:126240490..126240501,+!p11@NCOA7!0.75!4.58!NCOA7;;chr11:34642656..34642667,+!p2@EHF!0.75!4.58!EHF;;chr11:65554563..65554576,+!p2@OVOL1!0.75!4.58!OVOL1;;chr8:123793988..123794016,+!p1@ZHX2!0.74!8.48!ZHX2;;chr6:126112074..126112144,+!p1@NCOA7!0.73!64.84!NCOA7;;chr10:63809013..63809041,+!p3@ARID5B!0.73!27.03!ARID5B;;chr2:46524897..46524911,+!p2@EPAS1!0.73!13.29!EPAS1;;chr22:31739291..31739311,-!p2@PATZ1!0.73!4.35!PATZ1;;chr3:147111198..14711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|sample_tissue=ovary
|sample_donor(cell lot)=
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|sample_age=45
|sample_ethnicity=J
|rna_rin=
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|sample_cell_type=unclassifiable
|sample_cell_line=JHOS-2
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=serous adenocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=22.0336
|rna_concentration=0.4688
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|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:120,DOID:14566,DOID:162,DOID:193,DOID:299,DOID:3001,DOID:305,DOID:4
|sample_description=
|fonse_cell_line=FF:0101120,FF:0101555
|fonse_cell_line=FF:0101120,FF:0101555
|fonse_cell_line_closure=FF:0101120,FF:0101555
|fonse_cell_line_closure=FF:0101120,FF:0101555
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|creation_date=
|def=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg19.ctss.bed.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aJHOS-2.CNhs11746.10639-108I9.hg38.nobarcode.ctss.bed.gz
|id=FF:10639-108I9
|is_a=EFO:0002091;;FF:0000210;;FF:0103803
|is_obsolete=
|library_id=CNhs11746
|library_id_phase_based=2:CNhs11746
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10639
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10639
|name=serous adenocarcinoma cell line:JHOS-2
|namespace=FANTOM5
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|rna_box=108
|rna_catalog_number=
|rna_concentration=0.4688
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.02
|rna_od260/280=2.04
|rna_position=I9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108I9
|rna_weight_ug=22.0336
|sample_age=45
|sample_category=cell lines
|sample_cell_catalog=RCB1521
|sample_cell_line=JHOS-2
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=serous adenocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.36004309678793e-241!GO:0043226;organelle;3.5213194462064e-198!GO:0043229;intracellular organelle;1.75602628444994e-197!GO:0043231;intracellular membrane-bound organelle;1.72498192489229e-193!GO:0043227;membrane-bound organelle;1.93661029145725e-193!GO:0005737;cytoplasm;4.9196309111484e-175!GO:0044422;organelle part;1.01073485338496e-142!GO:0044446;intracellular organelle part;3.76271686596782e-141!GO:0044444;cytoplasmic part;1.52382235994538e-120!GO:0032991;macromolecular complex;1.73423978676658e-92!GO:0005634;nucleus;7.9453532378679e-83!GO:0044237;cellular metabolic process;2.89537910297569e-80!GO:0044238;primary metabolic process;4.96889344549397e-78!GO:0030529;ribonucleoprotein complex;4.96889344549397e-78!GO:0005515;protein binding;8.80063909680418e-77!GO:0043170;macromolecule metabolic process;3.90397142406037e-76!GO:0044428;nuclear part;8.6036780380204e-71!GO:0003723;RNA binding;8.42008602876492e-69!GO:0043233;organelle lumen;1.14817466516168e-66!GO:0031974;membrane-enclosed lumen;1.14817466516168e-66!GO:0005739;mitochondrion;2.91932440953437e-58!GO:0016043;cellular component organization and biogenesis;2.59143929284769e-50!GO:0031090;organelle membrane;3.69409530410859e-49!GO:0043283;biopolymer metabolic process;2.40976414695971e-47!GO:0043234;protein complex;5.43295806368432e-47!GO:0005840;ribosome;8.10507597202946e-46!GO:0006396;RNA processing;8.10507597202946e-46!GO:0019538;protein metabolic process;5.65251158408159e-45!GO:0006412;translation;7.57374333763532e-45!GO:0033036;macromolecule localization;1.95758614983548e-44!GO:0015031;protein transport;1.58433251805585e-43!GO:0031981;nuclear lumen;1.81941193090358e-42!GO:0010467;gene expression;1.58335792977227e-41!GO:0044267;cellular protein metabolic process;4.04084400332647e-41!GO:0044260;cellular macromolecule metabolic process;9.83303923338834e-41!GO:0003735;structural constituent of ribosome;1.87535342187589e-40!GO:0008104;protein localization;2.66697638763019e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.09481417286654e-39!GO:0016071;mRNA metabolic process;5.10217723091599e-39!GO:0045184;establishment of protein localization;6.52294540422236e-39!GO:0043228;non-membrane-bound organelle;9.20976936699528e-39!GO:0043232;intracellular non-membrane-bound organelle;9.20976936699528e-39!GO:0044429;mitochondrial part;5.06726356140799e-38!GO:0031967;organelle envelope;6.7386953874635e-38!GO:0046907;intracellular transport;6.83331441127837e-38!GO:0031975;envelope;1.29337859290157e-37!GO:0008380;RNA splicing;5.57399221615872e-36!GO:0005829;cytosol;8.49111687506031e-36!GO:0033279;ribosomal subunit;3.43992663781502e-35!GO:0009058;biosynthetic process;9.43312836360024e-35!GO:0006397;mRNA processing;1.52949138556712e-33!GO:0044249;cellular biosynthetic process;2.65034511324886e-33!GO:0009059;macromolecule biosynthetic process;1.30317658332982e-32!GO:0006996;organelle organization and biogenesis;1.07228446688989e-31!GO:0006886;intracellular protein transport;3.32739860005213e-31!GO:0065003;macromolecular complex assembly;6.11880195891547e-28!GO:0006259;DNA metabolic process;2.19922447072449e-26!GO:0019866;organelle inner membrane;3.51246909414347e-26!GO:0005681;spliceosome;3.72045890595422e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.96439199916963e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.5501891184689e-25!GO:0005654;nucleoplasm;5.3329357415606e-25!GO:0005740;mitochondrial envelope;1.05559741498023e-24!GO:0022607;cellular component assembly;2.20792187483553e-24!GO:0051649;establishment of cellular localization;5.43536893266116e-24!GO:0031966;mitochondrial membrane;5.43536893266116e-24!GO:0051641;cellular localization;6.05608108345153e-24!GO:0005743;mitochondrial inner membrane;7.02791705226147e-24!GO:0003676;nucleic acid binding;2.94064607250074e-23!GO:0007049;cell cycle;1.18281262567322e-22!GO:0000166;nucleotide binding;7.54993355016306e-22!GO:0012505;endomembrane system;1.66685731661122e-21!GO:0044445;cytosolic part;1.74792030394895e-21!GO:0006119;oxidative phosphorylation;7.0857035912163e-21!GO:0016070;RNA metabolic process;4.78747898522678e-20!GO:0044451;nucleoplasm part;2.0076775106839e-19!GO:0005730;nucleolus;1.16606687790034e-18!GO:0015934;large ribosomal subunit;1.24144388770724e-18!GO:0006457;protein folding;3.00197349869544e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.2053443786246e-18!GO:0016462;pyrophosphatase activity;6.74601872672991e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;7.85957590528705e-18!GO:0017111;nucleoside-triphosphatase activity;1.29502035012635e-17!GO:0008134;transcription factor binding;1.3258891534417e-17!GO:0044455;mitochondrial membrane part;1.62677711289467e-17!GO:0015935;small ribosomal subunit;1.89656510493433e-17!GO:0016874;ligase activity;2.41792177204214e-17!GO:0005783;endoplasmic reticulum;3.03484047598263e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.1714664293184e-17!GO:0019941;modification-dependent protein catabolic process;5.89417314372159e-17!GO:0043632;modification-dependent macromolecule catabolic process;5.89417314372159e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.22443260995801e-16!GO:0022402;cell cycle process;1.25708137590459e-16!GO:0031980;mitochondrial lumen;1.2795462538467e-16!GO:0005759;mitochondrial matrix;1.2795462538467e-16!GO:0006605;protein targeting;1.43457473127038e-16!GO:0044257;cellular protein catabolic process;1.54138893714097e-16!GO:0044265;cellular macromolecule catabolic process;2.44155512085966e-16!GO:0006974;response to DNA damage stimulus;3.85910345118342e-16!GO:0022618;protein-RNA complex assembly;4.85987299350772e-16!GO:0043285;biopolymer catabolic process;6.20916014087331e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.40749718611618e-15!GO:0044432;endoplasmic reticulum part;2.180710086567e-15!GO:0006512;ubiquitin cycle;3.99801808253776e-15!GO:0032553;ribonucleotide binding;6.71687804155715e-15!GO:0032555;purine ribonucleotide binding;6.71687804155715e-15!GO:0048770;pigment granule;7.24319903334063e-15!GO:0042470;melanosome;7.24319903334063e-15!GO:0030163;protein catabolic process;1.1366149286824e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.19783589658714e-14!GO:0005794;Golgi apparatus;1.20946412077262e-14!GO:0017076;purine nucleotide binding;1.37893962531315e-14!GO:0005694;chromosome;1.46802776064524e-14!GO:0005746;mitochondrial respiratory chain;3.73273263601053e-14!GO:0048193;Golgi vesicle transport;3.92167069602178e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.6494179415667e-14!GO:0009057;macromolecule catabolic process;8.45956735900013e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.91507168787659e-14!GO:0003954;NADH dehydrogenase activity;8.91507168787659e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.91507168787659e-14!GO:0051082;unfolded protein binding;1.4699121775886e-13!GO:0031965;nuclear membrane;2.26509071194423e-13!GO:0005635;nuclear envelope;2.50815044265661e-13!GO:0006281;DNA repair;3.35178588665408e-13!GO:0043412;biopolymer modification;5.90031392827732e-13!GO:0044453;nuclear membrane part;6.09652595581736e-13!GO:0005761;mitochondrial ribosome;6.09652595581736e-13!GO:0000313;organellar ribosome;6.09652595581736e-13!GO:0008135;translation factor activity, nucleic acid binding;7.10598637319108e-13!GO:0000278;mitotic cell cycle;7.79670905312339e-13!GO:0044427;chromosomal part;8.05538600407754e-13!GO:0016192;vesicle-mediated transport;1.38987081424356e-12!GO:0012501;programmed cell death;1.79201813190552e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.18480298242343e-12!GO:0000375;RNA splicing, via transesterification reactions;2.18480298242343e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.18480298242343e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.36837474663009e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.45972434679212e-12!GO:0005524;ATP binding;3.38026806088916e-12!GO:0006915;apoptosis;3.44478915532135e-12!GO:0051186;cofactor metabolic process;3.44478915532135e-12!GO:0032559;adenyl ribonucleotide binding;3.45743115233724e-12!GO:0005789;endoplasmic reticulum membrane;6.37952388785821e-12!GO:0006913;nucleocytoplasmic transport;8.42950218546814e-12!GO:0030964;NADH dehydrogenase complex (quinone);9.62145358773178e-12!GO:0045271;respiratory chain complex I;9.62145358773178e-12!GO:0005747;mitochondrial respiratory chain complex I;9.62145358773178e-12!GO:0030554;adenyl nucleotide binding;9.85780932411541e-12!GO:0008219;cell death;1.03838447109785e-11!GO:0016265;death;1.03838447109785e-11!GO:0044248;cellular catabolic process;1.05190029095323e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.05190029095323e-11!GO:0042773;ATP synthesis coupled electron transport;1.05190029095323e-11!GO:0050794;regulation of cellular process;1.14632333368821e-11!GO:0006464;protein modification process;1.16996783599902e-11!GO:0003712;transcription cofactor activity;2.60598642313228e-11!GO:0016604;nuclear body;2.60598642313228e-11!GO:0051169;nuclear transport;2.6916918790804e-11!GO:0006260;DNA replication;2.95774329887721e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.09775042253527e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.25495424131237e-11!GO:0051276;chromosome organization and biogenesis;3.90217110661903e-11!GO:0006403;RNA localization;6.36803441351552e-11!GO:0006446;regulation of translational initiation;6.44420680580366e-11!GO:0006366;transcription from RNA polymerase II promoter;7.8109042920359e-11!GO:0009719;response to endogenous stimulus;8.22456372714251e-11!GO:0042254;ribosome biogenesis and assembly;9.30457479004042e-11!GO:0050657;nucleic acid transport;1.18378891137724e-10!GO:0051236;establishment of RNA localization;1.18378891137724e-10!GO:0050658;RNA transport;1.18378891137724e-10!GO:0005643;nuclear pore;1.22461574888211e-10!GO:0004386;helicase activity;1.58143636249621e-10!GO:0000074;regulation of progression through cell cycle;1.59519815112073e-10!GO:0051726;regulation of cell cycle;2.08112458192397e-10!GO:0016887;ATPase activity;2.63606401579117e-10!GO:0003743;translation initiation factor activity;2.77817420260472e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.01143943949964e-10!GO:0042623;ATPase activity, coupled;3.58767629412795e-10!GO:0043687;post-translational protein modification;3.7974282582704e-10!GO:0006732;coenzyme metabolic process;4.44928857328786e-10!GO:0006413;translational initiation;6.33874510828541e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.52500798482887e-10!GO:0065002;intracellular protein transport across a membrane;6.5728424260255e-10!GO:0022403;cell cycle phase;7.48641147307158e-10!GO:0008639;small protein conjugating enzyme activity;8.08158972586034e-10!GO:0016607;nuclear speck;8.32660523078089e-10!GO:0051301;cell division;1.06099078174432e-09!GO:0004842;ubiquitin-protein ligase activity;1.46065772482891e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.66242418643047e-09!GO:0007067;mitosis;1.80767305592801e-09!GO:0000087;M phase of mitotic cell cycle;1.99208403566584e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.8192650843523e-09!GO:0048523;negative regulation of cellular process;3.66703780383023e-09!GO:0005768;endosome;3.79937729681853e-09!GO:0006323;DNA packaging;4.95330181295528e-09!GO:0051028;mRNA transport;7.36486747553565e-09!GO:0065004;protein-DNA complex assembly;8.40240755949095e-09!GO:0019787;small conjugating protein ligase activity;9.09460596704056e-09!GO:0017038;protein import;1.3374931497292e-08!GO:0008026;ATP-dependent helicase activity;1.35023390869795e-08!GO:0015630;microtubule cytoskeleton;1.46278134269204e-08!GO:0015986;ATP synthesis coupled proton transport;1.72285674155236e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72285674155236e-08!GO:0009055;electron carrier activity;1.78484274856336e-08!GO:0042981;regulation of apoptosis;1.86514213360359e-08!GO:0043067;regulation of programmed cell death;2.3894271184607e-08!GO:0016881;acid-amino acid ligase activity;2.68636210755381e-08!GO:0005793;ER-Golgi intermediate compartment;2.86780784667201e-08!GO:0043566;structure-specific DNA binding;3.0581456262817e-08!GO:0006399;tRNA metabolic process;3.14093460890026e-08!GO:0000785;chromatin;3.26623199010333e-08!GO:0006163;purine nucleotide metabolic process;3.8037742268908e-08!GO:0009259;ribonucleotide metabolic process;4.22208827069956e-08!GO:0006333;chromatin assembly or disassembly;4.45423380351522e-08!GO:0008565;protein transporter activity;4.53108573281727e-08!GO:0043069;negative regulation of programmed cell death;4.91603972328139e-08!GO:0006164;purine nucleotide biosynthetic process;5.73918769418482e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.04138523504537e-08!GO:0019829;cation-transporting ATPase activity;7.06538722547104e-08!GO:0000279;M phase;7.73128289733136e-08!GO:0007005;mitochondrion organization and biogenesis;7.97052667584804e-08!GO:0048519;negative regulation of biological process;8.64887630458171e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.6284641704036e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.6284641704036e-08!GO:0050789;regulation of biological process;9.7975633999375e-08!GO:0043066;negative regulation of apoptosis;1.06045631542753e-07!GO:0009260;ribonucleotide biosynthetic process;1.14558099499884e-07!GO:0046930;pore complex;1.26976204512585e-07!GO:0009060;aerobic respiration;1.48866389867912e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.57288135898096e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.59478686614678e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.81487972956939e-07!GO:0009141;nucleoside triphosphate metabolic process;1.8931034492626e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.91222984060025e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.91222984060025e-07!GO:0009150;purine ribonucleotide metabolic process;2.1734677319722e-07!GO:0006916;anti-apoptosis;3.05894281084929e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.35675893272001e-07!GO:0003697;single-stranded DNA binding;3.39507166685481e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.50135322825413e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.50135322825413e-07!GO:0006461;protein complex assembly;3.72958415214336e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.75618006281467e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.17902504016741e-07!GO:0016564;transcription repressor activity;4.17902504016741e-07!GO:0006754;ATP biosynthetic process;4.20347233625114e-07!GO:0006753;nucleoside phosphate metabolic process;4.20347233625114e-07!GO:0051188;cofactor biosynthetic process;4.60256898496725e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.89354108766305e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.17318203716877e-07!GO:0044431;Golgi apparatus part;7.74474702569535e-07!GO:0045333;cellular respiration;8.47542433979976e-07!GO:0006364;rRNA processing;9.37025444060534e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.37387121702403e-07!GO:0006334;nucleosome assembly;1.02729540815788e-06!GO:0032446;protein modification by small protein conjugation;1.04473826187836e-06!GO:0046034;ATP metabolic process;1.11948165905488e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2637071799233e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.2637071799233e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2637071799233e-06!GO:0016567;protein ubiquitination;1.27583412007337e-06!GO:0016072;rRNA metabolic process;1.27966503890881e-06!GO:0003714;transcription corepressor activity;1.36996074526476e-06!GO:0006793;phosphorus metabolic process;1.78500522181437e-06!GO:0006796;phosphate metabolic process;1.78500522181437e-06!GO:0043038;amino acid activation;1.83561406324056e-06!GO:0006418;tRNA aminoacylation for protein translation;1.83561406324056e-06!GO:0043039;tRNA aminoacylation;1.83561406324056e-06!GO:0009056;catabolic process;1.84452537182378e-06!GO:0004298;threonine endopeptidase activity;1.96064014856009e-06!GO:0006752;group transfer coenzyme metabolic process;2.11195185401233e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.21457377593459e-06!GO:0048475;coated membrane;2.33539984043987e-06!GO:0030117;membrane coat;2.33539984043987e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.42832259114954e-06!GO:0045259;proton-transporting ATP synthase complex;2.64164956856561e-06!GO:0031497;chromatin assembly;2.9458006327261e-06!GO:0031324;negative regulation of cellular metabolic process;2.98547944538317e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.03246583282526e-06!GO:0051170;nuclear import;3.36853550059725e-06!GO:0005667;transcription factor complex;3.39922874568568e-06!GO:0030120;vesicle coat;4.04138203988922e-06!GO:0030662;coated vesicle membrane;4.04138203988922e-06!GO:0003924;GTPase activity;4.04138203988922e-06!GO:0051246;regulation of protein metabolic process;4.09529946323926e-06!GO:0000245;spliceosome assembly;4.84139248752989e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.72730163097694e-06!GO:0006084;acetyl-CoA metabolic process;7.05564178157197e-06!GO:0006099;tricarboxylic acid cycle;7.35537946201471e-06!GO:0046356;acetyl-CoA catabolic process;7.35537946201471e-06!GO:0006606;protein import into nucleus;7.72340195748503e-06!GO:0009108;coenzyme biosynthetic process;8.48153486007245e-06!GO:0051789;response to protein stimulus;9.9013319325115e-06!GO:0006986;response to unfolded protein;9.9013319325115e-06!GO:0044440;endosomal part;1.0818848726972e-05!GO:0010008;endosome membrane;1.0818848726972e-05!GO:0009892;negative regulation of metabolic process;1.25455527069883e-05!GO:0045786;negative regulation of progression through cell cycle;1.41953836956368e-05!GO:0016779;nucleotidyltransferase activity;1.43927317035841e-05!GO:0016568;chromatin modification;1.45629239062249e-05!GO:0006613;cotranslational protein targeting to membrane;1.49799442880675e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.57959217617543e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.6100441112924e-05!GO:0000151;ubiquitin ligase complex;1.62220720408291e-05!GO:0006261;DNA-dependent DNA replication;1.66420425313157e-05!GO:0007264;small GTPase mediated signal transduction;2.03725822031464e-05!GO:0016787;hydrolase activity;2.19662435184196e-05!GO:0005813;centrosome;2.4567466790666e-05!GO:0003724;RNA helicase activity;2.49351459855248e-05!GO:0005773;vacuole;2.60845939066805e-05!GO:0051168;nuclear export;2.87318021955864e-05!GO:0000139;Golgi membrane;3.13575035804553e-05!GO:0019222;regulation of metabolic process;3.27255699852837e-05!GO:0009117;nucleotide metabolic process;3.2944915306334e-05!GO:0003713;transcription coactivator activity;3.65773587911258e-05!GO:0016310;phosphorylation;4.01022378571278e-05!GO:0051427;hormone receptor binding;4.02836984083399e-05!GO:0031988;membrane-bound vesicle;4.0357172166185e-05!GO:0043623;cellular protein complex assembly;4.65407550088317e-05!GO:0016563;transcription activator activity;4.8188461831123e-05!GO:0048471;perinuclear region of cytoplasm;5.0240019543615e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.1867013697109e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.60025753510693e-05!GO:0008654;phospholipid biosynthetic process;6.15245356472092e-05!GO:0007010;cytoskeleton organization and biogenesis;6.905268350324e-05!GO:0005815;microtubule organizing center;7.43895566412952e-05!GO:0003690;double-stranded DNA binding;7.44591278766821e-05!GO:0016859;cis-trans isomerase activity;7.5900962201001e-05!GO:0009109;coenzyme catabolic process;7.68611612283458e-05!GO:0031982;vesicle;7.87258244114595e-05!GO:0016740;transferase activity;8.02048641650491e-05!GO:0035257;nuclear hormone receptor binding;8.53016675429944e-05!GO:0016481;negative regulation of transcription;8.53016675429944e-05!GO:0005525;GTP binding;8.56893947831216e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.32625080987859e-05!GO:0005769;early endosome;9.45375400849533e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000101761435255895!GO:0000315;organellar large ribosomal subunit;0.000101761435255895!GO:0016126;sterol biosynthetic process;0.000103738518247902!GO:0031410;cytoplasmic vesicle;0.000117647244698189!GO:0003729;mRNA binding;0.00012376611799004!GO:0005798;Golgi-associated vesicle;0.000144891273054318!GO:0006612;protein targeting to membrane;0.000154038816086455!GO:0005788;endoplasmic reticulum lumen;0.000167072828111917!GO:0051187;cofactor catabolic process;0.000169340713997868!GO:0000775;chromosome, pericentric region;0.000179244022581561!GO:0042802;identical protein binding;0.000192805720889126!GO:0006839;mitochondrial transport;0.00020894282171079!GO:0043021;ribonucleoprotein binding;0.000214941241417159!GO:0030176;integral to endoplasmic reticulum membrane;0.000217828507893421!GO:0005657;replication fork;0.000220869710727267!GO:0001558;regulation of cell growth;0.000232041678205393!GO:0005770;late endosome;0.000239946550245643!GO:0030036;actin cytoskeleton organization and biogenesis;0.000248219608346468!GO:0048522;positive regulation of cellular process;0.000262197046939618!GO:0016363;nuclear matrix;0.000284130326151822!GO:0008092;cytoskeletal protein binding;0.000290079327069679!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000290118076697846!GO:0008361;regulation of cell size;0.00029853066640572!GO:0008186;RNA-dependent ATPase activity;0.000321248494163964!GO:0016049;cell growth;0.000351743279761097!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000367476315745152!GO:0000323;lytic vacuole;0.00037482753318438!GO:0005764;lysosome;0.00037482753318438!GO:0000314;organellar small ribosomal subunit;0.000402243210341401!GO:0005763;mitochondrial small ribosomal subunit;0.000402243210341401!GO:0043681;protein import into mitochondrion;0.000430488490416237!GO:0005819;spindle;0.000437024971605881!GO:0006402;mRNA catabolic process;0.000446489766193978!GO:0065007;biological regulation;0.000449074714084515!GO:0031252;leading edge;0.000482089693163356!GO:0051329;interphase of mitotic cell cycle;0.000546793709735781!GO:0006695;cholesterol biosynthetic process;0.000557792021874602!GO:0051325;interphase;0.000566891293492889!GO:0006626;protein targeting to mitochondrion;0.000586095474695904!GO:0005874;microtubule;0.000627502684036802!GO:0016853;isomerase activity;0.000656571123645951!GO:0016044;membrane organization and biogenesis;0.000675942856933244!GO:0019899;enzyme binding;0.000696004092667239!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000708799864457596!GO:0032561;guanyl ribonucleotide binding;0.000733197896460615!GO:0019001;guanyl nucleotide binding;0.000733197896460615!GO:0006302;double-strand break repair;0.000761751520863834!GO:0004576;oligosaccharyl transferase activity;0.000761751520863834!GO:0006984;ER-nuclear signaling pathway;0.00076678501631673!GO:0007051;spindle organization and biogenesis;0.00078592236206677!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00078592236206677!GO:0007243;protein kinase cascade;0.00078979446715059!GO:0005885;Arp2/3 protein complex;0.000806246738557812!GO:0006414;translational elongation;0.000960094816714879!GO:0004004;ATP-dependent RNA helicase activity;0.000961153739604481!GO:0005048;signal sequence binding;0.00103875464724815!GO:0008250;oligosaccharyl transferase complex;0.00105196902202799!GO:0016197;endosome transport;0.00105545911430488!GO:0008094;DNA-dependent ATPase activity;0.00110891321774483!GO:0065009;regulation of a molecular function;0.00110891321774483!GO:0045941;positive regulation of transcription;0.00117323493311937!GO:0048468;cell development;0.00124823544688723!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00124899853204168!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00127363906110269!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0013180676293869!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0013180676293869!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0013180676293869!GO:0030029;actin filament-based process;0.00136975347834657!GO:0033116;ER-Golgi intermediate compartment membrane;0.00137715934076546!GO:0045454;cell redox homeostasis;0.00139351595763146!GO:0045893;positive regulation of transcription, DNA-dependent;0.00146208862795055!GO:0030867;rough endoplasmic reticulum membrane;0.0014792586990257!GO:0006891;intra-Golgi vesicle-mediated transport;0.00158805437702779!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00158862021112053!GO:0031323;regulation of cellular metabolic process;0.00160153022973213!GO:0015980;energy derivation by oxidation of organic compounds;0.00168790933452037!GO:0006350;transcription;0.00173408893147055!GO:0046870;cadmium ion binding;0.00176408263904882!GO:0046489;phosphoinositide biosynthetic process;0.00177054726887911!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00191046279322285!GO:0015992;proton transport;0.00199149859256579!GO:0003899;DNA-directed RNA polymerase activity;0.00207199257668365!GO:0000786;nucleosome;0.00212458936770968!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00214107265710876!GO:0006818;hydrogen transport;0.00216781083814651!GO:0046483;heterocycle metabolic process;0.00217207360071667!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00217207360071667!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00223359186246996!GO:0005637;nuclear inner membrane;0.00224740131491541!GO:0006401;RNA catabolic process;0.00235542452618671!GO:0048500;signal recognition particle;0.00239520393790917!GO:0016491;oxidoreductase activity;0.00241477028123511!GO:0031124;mRNA 3'-end processing;0.00245334834196715!GO:0005684;U2-dependent spliceosome;0.00259406634140297!GO:0051252;regulation of RNA metabolic process;0.00261025713265907!GO:0030118;clathrin coat;0.00261292969058562!GO:0006405;RNA export from nucleus;0.00287100878628353!GO:0035258;steroid hormone receptor binding;0.00301401964336013!GO:0032508;DNA duplex unwinding;0.00320071016572834!GO:0032392;DNA geometric change;0.00320071016572834!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00322815050165164!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00322815050165164!GO:0046474;glycerophospholipid biosynthetic process;0.0033102823893053!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00345850910729157!GO:0045892;negative regulation of transcription, DNA-dependent;0.00349136124500939!GO:0008234;cysteine-type peptidase activity;0.00377314200820445!GO:0048487;beta-tubulin binding;0.00383484694613308!GO:0018196;peptidyl-asparagine modification;0.00396313289149644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00396313289149644!GO:0008033;tRNA processing;0.00402041165903207!GO:0009165;nucleotide biosynthetic process;0.00423523307869831!GO:0031072;heat shock protein binding;0.00437205680878497!GO:0051087;chaperone binding;0.00473840711886393!GO:0009112;nucleobase metabolic process;0.00497331906685675!GO:0051920;peroxiredoxin activity;0.00500372178019925!GO:0008139;nuclear localization sequence binding;0.00509004450762056!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00511625273977161!GO:0003678;DNA helicase activity;0.00554694578769425!GO:0030133;transport vesicle;0.00570053838924411!GO:0030433;ER-associated protein catabolic process;0.00570053838924411!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00570053838924411!GO:0019843;rRNA binding;0.00574871958355065!GO:0008312;7S RNA binding;0.00578963050508302!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00580690835629019!GO:0040008;regulation of growth;0.0058666668180393!GO:0003682;chromatin binding;0.00596499448576872!GO:0006611;protein export from nucleus;0.00596499448576872!GO:0000049;tRNA binding;0.00606554109403584!GO:0030132;clathrin coat of coated pit;0.00606554109403584!GO:0051052;regulation of DNA metabolic process;0.0063605446899652!GO:0044452;nucleolar part;0.00670776025230336!GO:0030968;unfolded protein response;0.0067892749983871!GO:0005905;coated pit;0.00706101323726018!GO:0006268;DNA unwinding during replication;0.00708617380318553!GO:0006091;generation of precursor metabolites and energy;0.00718397569438833!GO:0006352;transcription initiation;0.00725719133862676!GO:0016272;prefoldin complex;0.00730197194575574!GO:0030134;ER to Golgi transport vesicle;0.00764869648292032!GO:0010468;regulation of gene expression;0.00771278895335874!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00785004282405315!GO:0045047;protein targeting to ER;0.00785004282405315!GO:0045792;negative regulation of cell size;0.00806050762820013!GO:0008632;apoptotic program;0.00809785623609455!GO:0004674;protein serine/threonine kinase activity;0.00818214044573382!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00825712137217138!GO:0015399;primary active transmembrane transporter activity;0.00825712137217138!GO:0031123;RNA 3'-end processing;0.00832415750599088!GO:0006383;transcription from RNA polymerase III promoter;0.00839016732538158!GO:0008610;lipid biosynthetic process;0.00846864221006955!GO:0007265;Ras protein signal transduction;0.00852350843628191!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00853426362003338!GO:0000059;protein import into nucleus, docking;0.00887063888472296!GO:0030658;transport vesicle membrane;0.00889700137515757!GO:0046983;protein dimerization activity;0.00892094805780608!GO:0031968;organelle outer membrane;0.00898495742338637!GO:0030308;negative regulation of cell growth;0.00936977837056133!GO:0030384;phosphoinositide metabolic process;0.00971330784895456!GO:0009116;nucleoside metabolic process;0.00987724446973761!GO:0046467;membrane lipid biosynthetic process;0.0102659436577606!GO:0003746;translation elongation factor activity;0.0104457116614415!GO:0031901;early endosome membrane;0.0104740272586977!GO:0016791;phosphoric monoester hydrolase activity;0.0105341454119536!GO:0009967;positive regulation of signal transduction;0.0105778343949574!GO:0043022;ribosome binding;0.0107797690486595!GO:0043488;regulation of mRNA stability;0.0109043686733199!GO:0043487;regulation of RNA stability;0.0109043686733199!GO:0048518;positive regulation of biological process;0.0109638637399626!GO:0019867;outer membrane;0.0110921005811728!GO:0030663;COPI coated vesicle membrane;0.0110921005811728!GO:0030126;COPI vesicle coat;0.0110921005811728!GO:0007017;microtubule-based process;0.0112512039749787!GO:0006950;response to stress;0.0115839359271311!GO:0007052;mitotic spindle organization and biogenesis;0.0117489584528884!GO:0016281;eukaryotic translation initiation factor 4F complex;0.011960885898655!GO:0015631;tubulin binding;0.0119882963118432!GO:0006417;regulation of translation;0.012033784738212!GO:0005083;small GTPase regulator activity;0.0121060100064727!GO:0016584;nucleosome positioning;0.0121629386279661!GO:0045045;secretory pathway;0.0122199508401229!GO:0006144;purine base metabolic process;0.0122277650218297!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0128230697658675!GO:0007006;mitochondrial membrane organization and biogenesis;0.0130482157817811!GO:0030127;COPII vesicle coat;0.0130482157817811!GO:0012507;ER to Golgi transport vesicle membrane;0.0130482157817811!GO:0043065;positive regulation of apoptosis;0.0134281625072995!GO:0022890;inorganic cation transmembrane transporter activity;0.013675105902554!GO:0006767;water-soluble vitamin metabolic process;0.0136938653208988!GO:0006650;glycerophospholipid metabolic process;0.0139159930368172!GO:0004721;phosphoprotein phosphatase activity;0.0141756811615689!GO:0003711;transcription elongation regulator activity;0.0145366466577744!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0151015901952398!GO:0032774;RNA biosynthetic process;0.0153386225565586!GO:0008601;protein phosphatase type 2A regulator activity;0.0158737873124864!GO:0006378;mRNA polyadenylation;0.016047297672703!GO:0006351;transcription, DNA-dependent;0.0169150252776568!GO:0006509;membrane protein ectodomain proteolysis;0.0171352499523934!GO:0033619;membrane protein proteolysis;0.0171352499523934!GO:0030660;Golgi-associated vesicle membrane;0.0172259341819295!GO:0005869;dynactin complex;0.0174408771438149!GO:0006376;mRNA splice site selection;0.0174408771438149!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0174408771438149!GO:0000792;heterochromatin;0.0182641891321172!GO:0007242;intracellular signaling cascade;0.0183399058888099!GO:0017166;vinculin binding;0.0187548425221591!GO:0050662;coenzyme binding;0.0188519554041336!GO:0030518;steroid hormone receptor signaling pathway;0.0189499887663647!GO:0007050;cell cycle arrest;0.0191129402970782!GO:0043068;positive regulation of programmed cell death;0.0191707017438046!GO:0030521;androgen receptor signaling pathway;0.0191707017438046!GO:0008022;protein C-terminus binding;0.0193652514915796!GO:0005832;chaperonin-containing T-complex;0.0195091355727004!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0204008962155453!GO:0006310;DNA recombination;0.021248327137694!GO:0030137;COPI-coated vesicle;0.0213145684465554!GO:0006506;GPI anchor biosynthetic process;0.0214978867222553!GO:0005741;mitochondrial outer membrane;0.02167072799632!GO:0031625;ubiquitin protein ligase binding;0.0218021271502516!GO:0005791;rough endoplasmic reticulum;0.0227196545327036!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0231281790200555!GO:0043284;biopolymer biosynthetic process;0.0233894327155952!GO:0033673;negative regulation of kinase activity;0.0234461938263126!GO:0006469;negative regulation of protein kinase activity;0.0234461938263126!GO:0042026;protein refolding;0.0244469663953295!GO:0006595;polyamine metabolic process;0.02498783991862!GO:0007059;chromosome segregation;0.0252389282371924!GO:0050811;GABA receptor binding;0.0255727181543324!GO:0003684;damaged DNA binding;0.0256389837253576!GO:0000075;cell cycle checkpoint;0.0270599649335864!GO:0005669;transcription factor TFIID complex;0.0275035745567976!GO:0008637;apoptotic mitochondrial changes;0.0276014618228556!GO:0030131;clathrin adaptor complex;0.0282923634933433!GO:0051540;metal cluster binding;0.0282974699706195!GO:0051536;iron-sulfur cluster binding;0.0282974699706195!GO:0001726;ruffle;0.0286523544402703!GO:0043596;nuclear replication fork;0.0287716854407999!GO:0050790;regulation of catalytic activity;0.0287843559258271!GO:0006505;GPI anchor metabolic process;0.0287888380562867!GO:0005856;cytoskeleton;0.0294519918727595!GO:0006516;glycoprotein catabolic process;0.0294686891986624!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.029537922032371!GO:0000096;sulfur amino acid metabolic process;0.0296866354284683!GO:0008287;protein serine/threonine phosphatase complex;0.0302438540281789!GO:0016311;dephosphorylation;0.0306528288196383!GO:0000159;protein phosphatase type 2A complex;0.0308317108700264!GO:0003702;RNA polymerase II transcription factor activity;0.0308368137374174!GO:0005099;Ras GTPase activator activity;0.0308368137374174!GO:0030119;AP-type membrane coat adaptor complex;0.0316802261044318!GO:0031529;ruffle organization and biogenesis;0.0317329671094087!GO:0005938;cell cortex;0.0317600812958257!GO:0007030;Golgi organization and biogenesis;0.0318477945522047!GO:0045926;negative regulation of growth;0.0320835976451459!GO:0030027;lamellipodium;0.0320997222161258!GO:0016251;general RNA polymerase II transcription factor activity;0.0322090961414525!GO:0006740;NADPH regeneration;0.0329099946411982!GO:0006098;pentose-phosphate shunt;0.0329099946411982!GO:0016018;cyclosporin A binding;0.0338837265522724!GO:0051287;NAD binding;0.0338880362200446!GO:0051059;NF-kappaB binding;0.0342259891402709!GO:0043624;cellular protein complex disassembly;0.0342389501005116!GO:0006284;base-excision repair;0.0344761336688149!GO:0030913;paranodal junction assembly;0.0357815487239589!GO:0032288;myelin formation;0.0357815487239589!GO:0006497;protein amino acid lipidation;0.036139928609189!GO:0000339;RNA cap binding;0.036352157145038!GO:0043492;ATPase activity, coupled to movement of substances;0.0372790474991264!GO:0006892;post-Golgi vesicle-mediated transport;0.0373473894760243!GO:0008538;proteasome activator activity;0.0373561764633838!GO:0000776;kinetochore;0.0374915031143656!GO:0005784;translocon complex;0.0374915031143656!GO:0003779;actin binding;0.0377630235364357!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0380329719395865!GO:0007034;vacuolar transport;0.0389821011572906!GO:0032984;macromolecular complex disassembly;0.0395207524348533!GO:0007041;lysosomal transport;0.0406620186013033!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0406620186013033!GO:0005862;muscle thin filament tropomyosin;0.0407289998213026!GO:0051348;negative regulation of transferase activity;0.0408192183564067!GO:0022415;viral reproductive process;0.0420493391845616!GO:0006541;glutamine metabolic process;0.0422429341751124!GO:0019783;small conjugating protein-specific protease activity;0.0422429341751124!GO:0051098;regulation of binding;0.0422429341751124!GO:0008168;methyltransferase activity;0.0428908015967137!GO:0006275;regulation of DNA replication;0.0434023569807235!GO:0050681;androgen receptor binding;0.0436041836747706!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0436041836747706!GO:0016741;transferase activity, transferring one-carbon groups;0.0436041836747706!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0437517339265522!GO:0030125;clathrin vesicle coat;0.0439246103967591!GO:0030665;clathrin coated vesicle membrane;0.0439246103967591!GO:0004527;exonuclease activity;0.0450924492455396!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0452853267585754!GO:0006607;NLS-bearing substrate import into nucleus;0.0458907817195052!GO:0031326;regulation of cellular biosynthetic process;0.0458907817195052!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0460511984666437!GO:0040029;regulation of gene expression, epigenetic;0.0464669820685644!GO:0008047;enzyme activator activity;0.047641807517382!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0481566686057448!GO:0000082;G1/S transition of mitotic cell cycle;0.0484941199295595!GO:0030880;RNA polymerase complex;0.0486812100583399!GO:0031301;integral to organelle membrane;0.0496943567006357
|sample_id=10639
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=ovary
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10639-108I9;search_select_hide=table117:FF:10639-108I9
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:serous adenocarcinoma cell line:JHOS-2
Species:Human (Homo sapiens)
Library ID:CNhs11746
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
age45
cell typeunclassifiable
cell lineJHOS-2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005011
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11746 CAGE DRX007998 DRR008870
Accession ID Hg19

Library idBAMCTSS
CNhs11746 DRZ000295 DRZ001680
Accession ID Hg38

Library idBAMCTSS
CNhs11746 DRZ011645 DRZ013030
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0751
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.24
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.104
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0896
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0896
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00203
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0875
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.147
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0896
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.068
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.452
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.332
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0196
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0896
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0896
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0896
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD42.599165e-4
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.226
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0357
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.452
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11746

Jaspar motifP-value
MA0002.25.49065e-4
MA0003.10.837
MA0004.10.101
MA0006.10.351
MA0007.10.398
MA0009.10.651
MA0014.10.125
MA0017.10.0614
MA0018.20.125
MA0019.10.741
MA0024.10.00247
MA0025.10.0911
MA0027.10.868
MA0028.10.04
MA0029.10.615
MA0030.10.0244
MA0031.10.608
MA0035.20.135
MA0038.10.18
MA0039.20.0141
MA0040.10.261
MA0041.10.717
MA0042.10.317
MA0043.10.351
MA0046.10.424
MA0047.20.591
MA0048.10.747
MA0050.10.437
MA0051.10.00473
MA0052.10.936
MA0055.10.256
MA0057.10.223
MA0058.10.0387
MA0059.10.0323
MA0060.12.15637e-4
MA0061.10.244
MA0062.20.237
MA0065.20.0272
MA0066.10.0677
MA0067.10.346
MA0068.10.931
MA0069.10.197
MA0070.10.664
MA0071.10.352
MA0072.10.764
MA0073.10.765
MA0074.10.751
MA0076.10.0551
MA0077.10.193
MA0078.10.317
MA0079.20.127
MA0080.22.04078e-7
MA0081.10.0267
MA0083.10.505
MA0084.10.619
MA0087.10.392
MA0088.10.0317
MA0090.11.91406e-4
MA0091.10.0104
MA0092.10.309
MA0093.10.102
MA0099.20.0749
MA0100.10.616
MA0101.10.776
MA0102.20.953
MA0103.19.78089e-4
MA0104.20.0273
MA0105.16.46911e-5
MA0106.10.243
MA0107.10.896
MA0108.20.0414
MA0111.10.635
MA0112.20.0189
MA0113.10.275
MA0114.10.105
MA0115.10.994
MA0116.18.95808e-6
MA0117.10.438
MA0119.10.225
MA0122.10.391
MA0124.10.27
MA0125.10.128
MA0131.10.344
MA0135.10.438
MA0136.10.00123
MA0137.20.336
MA0138.28.05668e-4
MA0139.10.94
MA0140.10.0565
MA0141.10.0303
MA0142.10.979
MA0143.10.563
MA0144.10.418
MA0145.10.809
MA0146.10.73
MA0147.10.0743
MA0148.10.492
MA0149.10.991
MA0150.10.0297
MA0152.10.899
MA0153.10.261
MA0154.19.97126e-4
MA0155.10.504
MA0156.10.0271
MA0157.10.489
MA0159.10.635
MA0160.10.26
MA0162.10.654
MA0163.16.14117e-6
MA0164.10.45
MA0258.10.00469
MA0259.10.17



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11746

Novel motifP-value
10.103
100.351
1000.969
1010.297
1020.51
1030.101
1040.707
1050.622
1060.793
1070.586
1080.812
1090.564
110.0335
1100.13
1110.255
1120.169
1130.608
1140.033
1150.811
1160.469
1170.308
1180.813
1190.219
120.594
1200.496
1210.481
1220.671
1230.0933
1240.0201
1250.426
1260.962
1270.758
1280.187
1290.758
130.657
1300.702
1310.463
1320.51
1330.06
1340.326
1350.00478
1360.0109
1370.249
1380.0769
1390.00268
140.687
1400.109
1410.84
1420.614
1435.74488e-4
1440.253
1450.365
1460.998
1470.684
1480.0428
1490.103
150.196
1500.853
1510.406
1520.121
1530.298
1540.97
1550.548
1560.691
1570.579
1580.388
1590.968
160.648
1600.125
1610.177
1620.457
1630.44
1640.682
1650.993
1660.186
1670.335
1680.987
1690.313
170.424
180.047
190.11
20.626
200.22
210.861
220.381
230.194
240.896
250.589
260.898
270.341
280.705
290.868
30.0642
300.78
310.213
320.00535
330.607
340.23
350.0195
360.0145
370.739
380.569
390.827
40.42
400.377
410.051
420.265
430.136
440.757
450.82
460.13
470.15
480.223
490.0661
50.14
500.999
510.137
520.531
530.255
540.111
550.728
560.554
570.459
580.248
590.086
60.892
600.512
610.731
620.0472
630.485
640.173
650.179
660.974
670.7
685.87428e-4
690.962
70.463
700.147
710.368
720.49
730.87
740.0099
750.31
760.739
770.555
780.965
790.0216
80.0591
800.13
810.0782
820.00437
830.191
840.883
850.0175
860.194
870.14
880.549
890.343
90.143
900.244
910.131
920.214
930.49
940.0137
950.665
960.0728
970.942
980.144
990.446



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11746


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

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