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{{f5samples
{{f5samples
|id=FF:11339-117F7
|DRA_sample_Accession=CAGE@SAMD00005779
|name=Chondrocyte - re diff, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005779
|sample_id=11339
|accession_numbers=CAGE;DRX008204;DRR009076;DRZ000501;DRZ001886;DRZ011851;DRZ013236
|rna_tube_id=117F7
|accession_numbers_RNASeq=sRNA-Seq;DRX037191;DRR041557;DRZ007199
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=F7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1662
|rna_catalog_number=CA402RD-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=60 years old adult
|sample_tissue=cartilage
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=60
|sample_ethnicity=B
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=chondrocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs11373,LSID771,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000058,CL:0000063,CL:0000134,CL:0000138,CL:0000144,CL:0000151,CL:0000153,CL:0000219,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000667,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000037,FF:0000245
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.85!77.94!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.67!956.73!AEBP1;;chr12:24102576..24102623,-!p2@SOX5!1.65!43.74!SOX5;;chr7:44143978..44143989,+!p2@AEBP1!1.58!66.80!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!1.52!40.56!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.49!40.56!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.48!29.43!PKNOX2;;chr20:39317868..39317884,-!p1@MAFB!1.40!277.55!MAFB;;chr20:6748325..6748352,+!p1@BMP2!1.37!31.81!BMP2;;chr1:170632250..170632277,+!p7@PRRX1!1.37!22.27!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!1.30!19.09!KLF17;;chr12:54380404..54380433,+!p3@HOXC10!1.30!19.09!HOXC10;;chr9:96717629..96717644,-!p1@BARX1!1.25!16.70!BARX1;;chr17:48072574..48072597,-!p1@DLX3!1.21!15.11!DLX3;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.47!PITX1;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.91!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!1.16!46.92!FOXP1;;chr21:36260295..36260310,-!p3@RUNX1!1.16!21.47!RUNX1;;chr5:134369879..134369898,-!p2@PITX1!1.16!13.52!PITX1;;chr7:96654133..96654150,-!p1@DLX5!1.16!13.52!DLX5;;chr17:70117153..70117174,+!p1@SOX9!1.15!133.61!SOX9;;chr2:102091566..102091581,-!p1@RFX8!1.14!12.72!RFX8;;chr3:21792682..21792720,-!p1@ZNF385D!1.14!12.72!ZNF385D;;chr8:116681409..116681431,-!p2@TRPS1!1.12!33.40!TRPS1;;chr8:116680215..116680245,-!p6@TRPS1!1.12!19.09!TRPS1;;chr12:48298765..48298783,-!p2@VDR!1.11!24.65!VDR;;chr18:22932080..22932170,-!p1@ZNF521!1.10!49.31!ZNF521;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.13!KDM5D;;chr21:40032558..40032578,-!p5@ERG!1.08!11.13!ERG;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!51.69!CREB3L1;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.84!NFATC1;;chr2:102091478..102091490,-!p3@RFX8!1.02!9.54!RFX8;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.54!PRRX1;;chr21:40033695..40033712,-!p6@ERG!1.02!9.54!ERG;;chr3:21792585..21792625,-!p2@ZNF385D!1.01!10.34!ZNF385D;;chr20:30433396..30433414,-!p1@FOXS1!0.99!8.75!FOXS1;;chr21:40032581..40032605,-!p4@ERG!0.99!8.75!ERG;;chr12:24103844..24103880,-!p3@SOX5!0.99!8.75!SOX5;;chr12:54379029..54379057,+!p2@HOXC10!0.99!8.75!HOXC10;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.75!HOXA7;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.72!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.75!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.95!PRRX1;;chr21:40032884..40032915,-!p2@ERG!0.95!7.95!ERG;;chr8:116673894..116673913,-!p12@TRPS1!0.95!7.95!TRPS1;;chr12:54378923..54378966,+!p1@HOXC10!0.95!7.95!HOXC10;;chr21:36260343..36260402,-!p6@RUNX1!0.94!12.72!RUNX1;;chr9:16870659..16870675,-!p2@BNC2!0.94!9.54!BNC2;;chr3:5021268..5021282,+!p4@BHLHE40!0.93!15.91!BHLHE40;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.72!CREB3L1;;chr21:36259445..36259519,-!p4@RUNX1!0.91!20.68!RUNX1;;chr3:21792790..21792824,-!p4@ZNF385D!0.91!7.16!ZNF385D;;chr17:59529743..59529798,+!p1@TBX4!0.91!7.16!TBX4;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.16!HOXA9;;chr7:96654026..96654061,-!p2@DLX5!0.91!7.16!DLX5;;chr15:42749722..42749739,-!p2@ZFP106!0.90!12.72!ZFP106;;chr18:53068911..53068935,-!p4@TCF4!0.90!7.95!TCF4;;chr12:66218255..66218304,+!p3@HMGA2!0.89!19.09!HMGA2;;chr12:48298785..48298828,-!p1@VDR!0.87!35.79!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.87!11.93!NFIX;;chr3:21792631..21792665,-!p3@ZNF385D!0.87!6.36!ZNF385D;;chr1:2985760..2985774,+!p1@PRDM16!0.87!6.36!PRDM16;;chr11:125034605..125034636,+!p2@PKNOX2!0.87!6.36!PKNOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.36!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.87!6.36!HOXA11;;chr8:49833948..49833973,-!p2@SNAI2!0.85!41.35!SNAI2;;chr3:71631382..71631413,-!p20@FOXP1!0.85!7.16!FOXP1;;chr8:49833978..49833996,-!p1@SNAI2!0.84!130.43!SNAI2;;chr12:96588368..96588394,+!p3@ELK3!0.84!16.70!ELK3;;chr9:132427972..132428056,+!p1@PRRX2!0.84!7.95!PRRX2;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.36!SHOX2;;chr13:45010939..45011033,-!p1@TSC22D1!0.83!406.39!TSC22D1;;chr21:36260463..36260480,-!p9@RUNX1!0.83!7.95!RUNX1;;chr5:124082322..124082364,-!p1@ZNF608!0.82!15.11!ZNF608;;chr7:77428227..77428242,+!p3@PHTF2!0.82!8.75!PHTF2;;chr3:71631151..71631194,-!p15@FOXP1!0.82!6.36!FOXP1;;chr18:46475696..46475713,-!p1@SMAD7!0.82!6.36!SMAD7;;chr19:13135386..13135435,+!p4@NFIX!0.82!5.57!NFIX;;chr7:27196217..27196246,-!p2@HOXA7!0.82!5.57!HOXA7;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.57!HOXC9;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.27!SIX1;;chr7:77428149..77428220,+!p1@PHTF2!0.80!58.06!PHTF2;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.24!HMGA2;;chr21:36260980..36261011,-!p1@RUNX1!0.79!162.24!RUNX1;;chr12:53614115..53614154,-!p1@RARG!0.78!29.43!RARG;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.75!FOXC1;;chr7:101459263..101459310,+!p1@CUX1!0.77!316.52!CUX1;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.20!SNAI1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.63!ETV1;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.77!HOXA11;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr18:22932004..22932021,-!p2@ZNF521!0.76!4.77!ZNF521;;chr9:132427883..132427951,+!p2@PRRX2!0.76!4.77!PRRX2;;chr1:170632683..170632696,+!p12@PRRX1!0.76!4.77!PRRX1;;chr21:40033882..40033887,-!p21@ERG!0.76!4.77!ERG;;chr10:119303078..119303169,+!p2@EMX2!0.76!4.77!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.77!HOXC5;;chr19:13136130..13136165,+!p6@NFIX!0.75!6.36!NFIX;;chr3:5021113..5021180,+!p1@BHLHE40!0.74!347.54!BHLHE40;;chr10:64134120..64134183,+!p1@ZNF365!0.74!5.57!ZNF365;;chr5:88178983..88179012,-!p1@MEF2C!0.73!37.38!MEF2C;;chr10:64576105..64576133,-!p1@EGR2!0.73!9.54!EGR2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.77!GLIS1;;chr6:21593973..21593988,+!p1@SOX4!0.72!171.78!SOX4;;chr18:52989565..52989623,-!p9@TCF4!0.72!5.57!TCF4;;chr16:86600426..86600441,+!p1@FOXC2!0.71!11.13!FOXC2;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.57!SKIL;;chr19:45908292..45908374,-!p1@PPP1R13L!0.70!40.56!PPP1R13L;;chr15:57511609..57511651,+!p2@TCF12!0.70!7.16!TCF12;;chr18:45935720..45935772,-!p1@ZBTB7C!0.70!3.98!ZBTB7C;;chr19:13136057..13136085,+!p11@NFIX!0.70!3.98!NFIX;;chr1:119530857..119530884,-!p4@TBX15!0.70!3.98!TBX15;;chr1:170632310..170632321,+!p15@PRRX1!0.70!3.98!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.70!3.98!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.70!3.98!PRRX1;;chr21:36260325..36260341,-!p14@RUNX1!0.70!3.98!RUNX1;;chr2:45236540..45236577,-!p1@SIX2!0.70!3.98!SIX2;;chr3:5022272..5022321,+!p7@BHLHE40!0.70!3.98!BHLHE40;;chr4:109088940..109089037,-!p4@LEF1!0.70!3.98!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.70!3.98!LEF1;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!3.98!PKNOX2;;chr12:24103957..24103972,-!p5@SOX5!0.70!3.98!SOX5;;chr12:54402745..54402788,+!p1@HOXC8!0.70!3.98!HOXC8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.70!3.98!HOXC5;;chrY:2803415..2803468,+!p1@ZFY!0.70!3.98!ZFY;;chr13:41240717..41240735,-!p2@FOXO1!0.69!30.22!FOXO1;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.16!CREB3L2;;chr14:62162285..62162296,+!p3@HIF1A!0.68!22.27!HIF1A;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.20!SOX4;;chr10:114710098..114710130,+!p2@TCF7L2!0.66!31.02!TCF7L2;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.36!TWIST2;;chr7:101459230..101459243,+!p2@CUX1!0.64!19.09!CUX1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.64!7.95!ZNF395;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.36!TCF4;;chr1:23885981..23886002,-!p1@ID3!0.63!681.56!ID3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.36!ZNF454;;chr11:65667884..65667895,-!p2@FOSL1!0.62!14.32!FOSL1;;chr8:22550982..22550999,-!p1@EGR3!0.62!10.34!EGR3;;chr8:145159846..145159889,+!p6@MAF1!0.62!4.77!MAF1;;chr5:124082279..124082319,-!p3@ZNF608!0.62!3.98!ZNF608;;chr8:116681878..116681893,-!p15@TRPS1!0.62!3.18!TRPS1;;chr1:170632137..170632172,+!p10@PRRX1!0.62!3.18!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.18!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.62!3.18!LHX9;;chr21:38071430..38071456,+!p1@SIM2!0.62!3.18!SIM2;;chr2:45236579..45236596,-!p2@SIX2!0.62!3.18!SIX2;;chr12:54378984..54378996,+!p7@HOXC10!0.62!3.18!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.18!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.18!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.62!3.18!HOXC8;;chr12:66218923..66218934,+!p14@HMGA2!0.62!3.18!HMGA2;;chr9:130966497..130966541,-!p4@CIZ1!0.62!3.18!CIZ1;;chr12:54772960..54773015,-!p3@ZNF385A!0.61!17.50!ZNF385A;;chr19:44037546..44037594,+!p1@ZNF575!0.61!7.16!ZNF575;;chr15:100106670..100106697,+!p4@MEF2A!0.61!5.57!MEF2A;;chr5:321810..321877,+!p1@AHRR!0.60!11.13!AHRR;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.34!MSX1;;chr11:65430554..65430579,-!p3@RELA!0.60!8.75!RELA;;chr8:72756267..72756296,-!p4@MSC!0.60!4.77!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.59!9.54!SMARCA2;;chr7:150946015..150946070,-!p3@SMARCD3!0.59!7.16!SMARCD3;;chr18:52989081..52989117,-!p7@TCF4!0.59!4.77!TCF4;;chr12:66218152..66218174,+!p10@HMGA2!0.59!3.18!HMGA2;;chr12:124873357..124873401,-!p1@NCOR2!0.58!39.76!NCOR2;;chr1:164528445..164528459,+!p2@PBX1!0.58!10.34!PBX1;;chr19:12203100..12203132,+!p1@ZNF788!0.58!6.36!ZNF788;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.77!TSHZ3;;chr3:71632743..71632756,-!p16@FOXP1!0.58!4.77!FOXP1;;chr7:28725740..28725778,+!p1@CREB5!0.57!30.22!CREB5;;chr5:133450365..133450444,+!p1@TCF7!0.57!15.11!TCF7;;chr3:114343768..114343822,-!p1@ZBTB20!0.57!14.32!ZBTB20;;chr6:15246200..15246214,+!p2@JARID2!0.57!8.75!JARID2;;chr2:74229812..74229867,+!p1@TET3!0.57!7.95!TET3;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.98!ZFHX3;;chr7:44143738..44143760,+!p4@AEBP1!0.57!3.18!AEBP1;;chr3:5022174..5022207,+!p8@BHLHE40!0.56!3.18!BHLHE40;;chr22:24093267..24093327,-!p1@ZNF70!0.55!21.47!ZNF70;;chr4:146859927..146860055,-!p1@ZNF827!0.55!19.09!ZNF827;;chrX:129402768..129402796,-!p2@ZNF280C!0.55!9.54!ZNF280C;;chr16:54964740..54964789,+!p1@IRX5!0.55!3.98!IRX5;;chr5:92919068..92919082,+!p5@NR2F1!0.55!3.18!NR2F1;;chr10:114709999..114710031,+!p1@TCF7L2!0.54!73.96!TCF7L2;;chr3:71114066..71114114,-!p1@FOXP1!0.54!63.62!FOXP1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.17!ELK3;;chr3:5021191..5021202,+!p3@BHLHE40!0.54!7.95!BHLHE40;;chr2:121493425..1214934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LF10;;chr8:106330515..106330525,+!p6@ZFPM2!0.25!0.80!ZFPM2;;chr8:106330848..106330859,+!p5@ZFPM2!0.25!0.80!ZFPM2;;chr8:22550700..22550717,-!p4@EGR3!0.25!0.80!EGR3;;chr8:65492433..65492440,+!p6@BHLHE22!0.25!0.80!BHLHE22;;chr8:65492520..65492554,+!p3@BHLHE22!0.25!0.80!BHLHE22;;chr8:72755987..72756002,-!p7@MSC!0.25!0.80!MSC;;chr8:72756251..72756262,-!p12@MSC!0.25!0.80!MSC;;chr8:72756380..72756427,-!p8@MSC!0.25!0.80!MSC;;chr8:81787006..81787031,-!p2@ZNF704!0.25!0.80!ZNF704;;chr9:115819058..115819082,-!p2@ZFP37!0.25!0.80!ZFP37;;chr14:75746705..75746720,+!p8@FOS!0.25!0.80!FOS;;chr14:75988831..75988847,+!p2@BATF!0.25!0.80!BATF;;chr15:31684663..31684717,+!p10@KLF13!0.25!0.80!KLF13;;chr15:35280823..35280852,-!p6@ZNF770!0.25!0.80!ZNF770;;chr15:57025732..57025743,-!p6@ZNF280D!0.25!0.80!ZNF280D;;chr15:57212102..57212120,+!p18@TCF12!0.25!0.80!TCF12;;chr15:66994718..66994729,+!p4@SMAD6!0.25!0.80!SMAD6;;chr15:66994885..66994904,+!p7@SMAD6!0.25!0.80!SMAD6;;chr15:67391010..67391046,+!p13@SMAD3!0.25!0.80!SMAD3;;chr15:80696666..80696700,+!p4@ARNT2!0.25!0.80!ARNT2;;chr16:1031762..1031781,+!p1@SOX8!0.25!0.80!SOX8;;chr16:29819558..29819572,+!p28@MAZ!0.25!0.80!MAZ;;chr16:30538376..30538386,-!p8@ZNF768!0.25!0.80!ZNF768;;chr16:54964899..54964914,+!p2@IRX5!0.25!0.80!IRX5;;chr16:73093210..73093223,-!p13@ZFHX3!0.25!0.80!ZFHX3;;chr16:79633883..79633892,-!p6@MAF!0.25!0.80!MAF;;chr16:79634581..79634592,-!p4@MAF!0.25!0.80!MAF;;chr16:86600458..86600461,+!p3@FOXC2!0.25!0.80!FOXC2;;chr17:40719286..40719299,+!p6@MLX!0.25!0.80!MLX;;chr17:46128217..46128243,+!p11@NFE2L1!0.25!0.80!NFE2L1;;chr17:46621146..46621180,-!p10@HOXB2!0.25!0.80!HOXB2;;chr17:48072063..48072074,-!p5@DLX3!0.25!0.80!DLX3;;chr17:48072421..48072424,-!p2@DLX3!0.25!0.80!DLX3;;chr17:5026405..5026422,-!p2@ZNF232!0.25!0.80!ZNF232;;chr17:79881433..79881452,-!p6@MAFG!0.25!0.80!MAFG;;chr18:19749504..19749515,+!p5@GATA6!0.25!0.80!GATA6;;chr18:42260840..42260860,+!p2@SETBP1!0.25!0.80!SETBP1;;chr18:42260920..42260951,+!p4@SETBP1!0.25!0.80!SETBP1;;chr18:46476499..46476507,-!p3@SMAD7!0.25!0.80!SMAD7;;chr18:52988952..52988965,-!p23@TCF4!0.25!0.80!TCF4;;chr18:52988979..52988993,-!p18@TCF4!0.25!0.80!TCF4;;chr18:52989415..52989429,-!p63@TCF4!0.25!0.80!TCF4;;chr18:53070846..53070902,-!p6@TCF4!0.25!0.80!TCF4;;chr18:53089493..53089517,-!p15@TCF4!0.25!0.80!TCF4;;chr18:53089521..53089533,-!p22@TCF4!0.25!0.80!TCF4;;chr18:53253297..53253322,-!p30@TCF4!0.25!0.80!TCF4;;chr18:53255323..53255332,-!p31@TCF4!0.25!0.80!TCF4;;chr18:53255349..53255358,-!p29@TCF4!0.25!0.80!TCF4;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.25!0.80!ZNF625;;chr19:12595565..12595576,-!p3@ZNF709!0.25!0.80!ZNF709;;chr19:13135369..13135375,+!p21@NFIX!0.25!0.80!NFIX;;chr19:13135731..13135787,+!p10@NFIX!0.25!0.80!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.25!0.80!NFIX;;chr19:13135989..13136023,+!p18@NFIX!0.25!0.80!NFIX;;chr19:19976620..19976631,+!p4@ZNF253!0.25!0.80!ZNF253;;chr19:31840168..31840186,-!p6@TSHZ3!0.25!0.80!TSHZ3;;chr19:35454968..35454984,-!p3@ZNF792!0.25!0.80!ZNF792;;chr1:43148059..43148108,+!p1@YBX1!0.24!101.80!YBX1;;chr10:31608127..31608156,+!p1@ZEB1!0.24!28.63!ZEB1;;chr7:137686824..137686865,-!p2@CREB3L2!0.24!19.09!CREB3L2;;chr1:41157421..41157482,+!p2@NFYC!0.24!17.50!NFYC;;chr19:11708259..11708309,+!p1@ZNF627!0.24!15.11!ZNF627;;chr12:2986275..2986363,-!p1@FOXM1!0.24!15.11!FOXM1;;chr19:57901208..57901280,+!p1@ZNF548!0.24!11.93!ZNF548;;chr19:58427951..58427984,-!p1@ZNF417!0.24!10.34!ZNF417;;chr7:77428066..77428132,+!p2@PHTF2!0.24!9.54!PHTF2;;chr4:140005443..140005527,-!p2@ELF2!0.24!8.75!ELF2;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=117
|rna_catalog_number=CA402RD-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1662
|rna_od260/230=
|rna_od260/280=
|rna_position=F7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117F7
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.CTTGTA
|sample_age=60
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=chondrocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=60 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=B
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.34148420413951e-205!GO:0005737;cytoplasm;1.51831995828624e-164!GO:0043231;intracellular membrane-bound organelle;1.31406043635286e-160!GO:0043227;membrane-bound organelle;2.50212434063038e-160!GO:0043226;organelle;2.00320308172607e-157!GO:0043229;intracellular organelle;4.11399161385065e-157!GO:0044422;organelle part;1.22865243385633e-119!GO:0044446;intracellular organelle part;2.30098698736618e-118!GO:0044444;cytoplasmic part;2.59874050949156e-115!GO:0032991;macromolecular complex;3.7814603217457e-86!GO:0005515;protein binding;6.95783188362707e-76!GO:0030529;ribonucleoprotein complex;1.67499013241496e-72!GO:0044238;primary metabolic process;3.89165286579062e-72!GO:0044237;cellular metabolic process;8.62155628692032e-72!GO:0043170;macromolecule metabolic process;6.50961213738798e-69!GO:0043233;organelle lumen;3.98340639940921e-65!GO:0031974;membrane-enclosed lumen;3.98340639940921e-65!GO:0044428;nuclear part;1.343493807585e-64!GO:0003723;RNA binding;6.43856460830283e-61!GO:0005634;nucleus;1.12741588110804e-60!GO:0005739;mitochondrion;6.09356358781102e-50!GO:0016043;cellular component organization and biogenesis;2.02060050234905e-46!GO:0006396;RNA processing;2.82593263390282e-44!GO:0043234;protein complex;9.56514932436303e-44!GO:0031090;organelle membrane;2.74353993331902e-43!GO:0015031;protein transport;8.5128644180404e-43!GO:0033036;macromolecule localization;4.82218499844507e-42!GO:0005840;ribosome;2.42416242512755e-41!GO:0019538;protein metabolic process;1.27766319162788e-40!GO:0031981;nuclear lumen;1.4219233497146e-40!GO:0006412;translation;8.15947886151325e-40!GO:0045184;establishment of protein localization;8.15947886151325e-40!GO:0008104;protein localization;7.90808208219894e-39!GO:0016071;mRNA metabolic process;1.36255435992889e-36!GO:0003735;structural constituent of ribosome;7.21104732776526e-36!GO:0044260;cellular macromolecule metabolic process;3.54589029425344e-35!GO:0043283;biopolymer metabolic process;1.79379314121283e-34!GO:0046907;intracellular transport;3.3662860842335e-34!GO:0044267;cellular protein metabolic process;3.55052838460607e-34!GO:0044429;mitochondrial part;8.33912702595636e-34!GO:0008380;RNA splicing;1.34844178603043e-33!GO:0005829;cytosol;6.6369287780628e-33!GO:0009059;macromolecule biosynthetic process;2.27556820759703e-32!GO:0010467;gene expression;2.72283313537321e-32!GO:0031967;organelle envelope;1.23096396862673e-31!GO:0006397;mRNA processing;1.36883267739367e-31!GO:0009058;biosynthetic process;1.36883267739367e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.41652043185524e-31!GO:0031975;envelope;2.37534732793232e-31!GO:0033279;ribosomal subunit;1.34909044328912e-30!GO:0006886;intracellular protein transport;1.90756475315486e-30!GO:0065003;macromolecular complex assembly;6.94552924224647e-30!GO:0044249;cellular biosynthetic process;9.30920463628046e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.81268071681574e-28!GO:0022607;cellular component assembly;7.60208981611266e-26!GO:0006996;organelle organization and biogenesis;3.59840245254479e-25!GO:0043228;non-membrane-bound organelle;6.83164222535042e-25!GO:0043232;intracellular non-membrane-bound organelle;6.83164222535042e-25!GO:0005654;nucleoplasm;1.70589561136462e-24!GO:0005681;spliceosome;1.13183501197501e-23!GO:0005740;mitochondrial envelope;2.01236729545429e-22!GO:0051649;establishment of cellular localization;2.21957253054631e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.3493069902443e-22!GO:0051641;cellular localization;3.07724551217679e-22!GO:0006259;DNA metabolic process;3.45550496024414e-22!GO:0031966;mitochondrial membrane;1.84672908098902e-21!GO:0005783;endoplasmic reticulum;3.49804874152802e-21!GO:0006457;protein folding;1.06235600035133e-20!GO:0019866;organelle inner membrane;2.66601837852675e-20!GO:0044451;nucleoplasm part;1.12732809918442e-19!GO:0016462;pyrophosphatase activity;1.48254979578109e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6296829404249e-19!GO:0005743;mitochondrial inner membrane;3.24350737594187e-19!GO:0006119;oxidative phosphorylation;3.34471315533275e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.67300682304785e-19!GO:0044445;cytosolic part;8.80785827086106e-19!GO:0017111;nucleoside-triphosphatase activity;2.18983801421287e-18!GO:0005730;nucleolus;5.89007804740824e-18!GO:0012505;endomembrane system;1.1357108511079e-17!GO:0007049;cell cycle;1.5786035949845e-17!GO:0003676;nucleic acid binding;2.78204537266811e-17!GO:0048770;pigment granule;3.66072528983436e-17!GO:0042470;melanosome;3.66072528983436e-17!GO:0022618;protein-RNA complex assembly;8.18236068950574e-17!GO:0000166;nucleotide binding;2.50184213008273e-16!GO:0043285;biopolymer catabolic process;3.07966628902589e-16!GO:0015935;small ribosomal subunit;3.45486188930387e-16!GO:0044455;mitochondrial membrane part;3.64028699736158e-16!GO:0044432;endoplasmic reticulum part;7.65523365299741e-16!GO:0044265;cellular macromolecule catabolic process;1.14940523280841e-15!GO:0009057;macromolecule catabolic process;1.32746403045506e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.48339870785292e-15!GO:0015934;large ribosomal subunit;2.96124174376603e-15!GO:0005794;Golgi apparatus;4.82533058366262e-15!GO:0008134;transcription factor binding;7.61218906997647e-15!GO:0016070;RNA metabolic process;1.11148871572855e-14!GO:0008135;translation factor activity, nucleic acid binding;1.13264033505237e-14!GO:0006605;protein targeting;1.16183269321031e-14!GO:0016874;ligase activity;1.29388649640897e-14!GO:0030163;protein catabolic process;3.05923169083636e-14!GO:0051082;unfolded protein binding;4.05266701054836e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.32280154974642e-14!GO:0031980;mitochondrial lumen;1.06385237950105e-13!GO:0005759;mitochondrial matrix;1.06385237950105e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.06395812210538e-13!GO:0000278;mitotic cell cycle;1.37392921466763e-13!GO:0005746;mitochondrial respiratory chain;1.63224276191625e-13!GO:0019941;modification-dependent protein catabolic process;2.15223061739673e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.15223061739673e-13!GO:0044257;cellular protein catabolic process;2.27219672301288e-13!GO:0022402;cell cycle process;2.40728749453829e-13!GO:0048193;Golgi vesicle transport;2.7530105435476e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.66257902661172e-13!GO:0016192;vesicle-mediated transport;4.95992702288148e-13!GO:0051186;cofactor metabolic process;1.17310755448953e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.53851802998023e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.55661598627302e-12!GO:0003954;NADH dehydrogenase activity;1.55661598627302e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.55661598627302e-12!GO:0006512;ubiquitin cycle;1.67185004540474e-12!GO:0006974;response to DNA damage stimulus;2.75655119831225e-12!GO:0044248;cellular catabolic process;2.86721926271779e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.46873679947761e-12!GO:0000375;RNA splicing, via transesterification reactions;3.46873679947761e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.46873679947761e-12!GO:0032553;ribonucleotide binding;5.11042504011869e-12!GO:0032555;purine ribonucleotide binding;5.11042504011869e-12!GO:0005761;mitochondrial ribosome;1.12636087338826e-11!GO:0000313;organellar ribosome;1.12636087338826e-11!GO:0017076;purine nucleotide binding;1.40794175489647e-11!GO:0042254;ribosome biogenesis and assembly;1.90712511039192e-11!GO:0003743;translation initiation factor activity;2.35332862433917e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.80252222393035e-11!GO:0006913;nucleocytoplasmic transport;5.12576690970833e-11!GO:0006413;translational initiation;6.41554676066866e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.74366597207029e-11!GO:0045271;respiratory chain complex I;6.74366597207029e-11!GO:0005747;mitochondrial respiratory chain complex I;6.74366597207029e-11!GO:0042775;organelle ATP synthesis coupled electron transport;7.13983237526703e-11!GO:0042773;ATP synthesis coupled electron transport;7.13983237526703e-11!GO:0051169;nuclear transport;9.55394665944808e-11!GO:0005793;ER-Golgi intermediate compartment;1.14666046037791e-10!GO:0008565;protein transporter activity;1.33585251628637e-10!GO:0031965;nuclear membrane;1.5647758956534e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84079504948032e-10!GO:0016887;ATPase activity;1.90747374538858e-10!GO:0042623;ATPase activity, coupled;2.42779263568601e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.47690897540461e-10!GO:0048523;negative regulation of cellular process;2.71384541656298e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.94868322092164e-10!GO:0006281;DNA repair;3.64390441081094e-10!GO:0004386;helicase activity;3.77606620577278e-10!GO:0000087;M phase of mitotic cell cycle;4.31299985312347e-10!GO:0006732;coenzyme metabolic process;5.87471749144878e-10!GO:0005789;endoplasmic reticulum membrane;5.87471749144878e-10!GO:0007067;mitosis;6.90997151180444e-10!GO:0005635;nuclear envelope;7.35248760810413e-10!GO:0006446;regulation of translational initiation;9.19471953424613e-10!GO:0016604;nuclear body;1.5584124798262e-09!GO:0006888;ER to Golgi vesicle-mediated transport;2.16134996631548e-09!GO:0009719;response to endogenous stimulus;2.19109609962483e-09!GO:0009055;electron carrier activity;2.2279735995989e-09!GO:0044453;nuclear membrane part;2.46155168134716e-09!GO:0005524;ATP binding;2.51490747145525e-09!GO:0009259;ribonucleotide metabolic process;3.11392857437732e-09!GO:0005694;chromosome;3.6496944937898e-09!GO:0008026;ATP-dependent helicase activity;3.6496944937898e-09!GO:0006163;purine nucleotide metabolic process;3.70291873814763e-09!GO:0051276;chromosome organization and biogenesis;4.17030300287091e-09!GO:0005788;endoplasmic reticulum lumen;5.05194012726202e-09!GO:0017038;protein import;5.07282190033831e-09!GO:0032559;adenyl ribonucleotide binding;5.44763830887146e-09!GO:0012501;programmed cell death;8.34818150432818e-09!GO:0051726;regulation of cell cycle;8.75010817668648e-09!GO:0009056;catabolic process;8.89457267515926e-09!GO:0000074;regulation of progression through cell cycle;9.9363512966404e-09!GO:0006461;protein complex assembly;9.95099723729506e-09!GO:0065002;intracellular protein transport across a membrane;1.20651312294885e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22992788783754e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.28481875186273e-08!GO:0003712;transcription cofactor activity;1.41153639922918e-08!GO:0006915;apoptosis;1.43915798185166e-08!GO:0048519;negative regulation of biological process;1.43915798185166e-08!GO:0006260;DNA replication;1.45464324666779e-08!GO:0009150;purine ribonucleotide metabolic process;1.58530206898623e-08!GO:0030554;adenyl nucleotide binding;1.71887928394514e-08!GO:0006164;purine nucleotide biosynthetic process;1.72178286666603e-08!GO:0022403;cell cycle phase;1.74026707890296e-08!GO:0051301;cell division;2.02393320033893e-08!GO:0006366;transcription from RNA polymerase II promoter;2.26728216899072e-08!GO:0005643;nuclear pore;2.39814742671424e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.89382862057075e-08!GO:0006323;DNA packaging;3.40125318521199e-08!GO:0065004;protein-DNA complex assembly;3.6121296225254e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.83584711692684e-08!GO:0009260;ribonucleotide biosynthetic process;4.28696417574997e-08!GO:0008639;small protein conjugating enzyme activity;4.47229941259361e-08!GO:0008219;cell death;6.39620081006558e-08!GO:0016265;death;6.39620081006558e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.43558779698887e-08!GO:0050657;nucleic acid transport;7.43701268859552e-08!GO:0051236;establishment of RNA localization;7.43701268859552e-08!GO:0050658;RNA transport;7.43701268859552e-08!GO:0016607;nuclear speck;7.87182465118259e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.01224619374377e-08!GO:0006403;RNA localization;9.6078284561699e-08!GO:0004842;ubiquitin-protein ligase activity;1.0108814221796e-07!GO:0030120;vesicle coat;1.14505891227143e-07!GO:0030662;coated vesicle membrane;1.14505891227143e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16170232069372e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.16170232069372e-07!GO:0015986;ATP synthesis coupled proton transport;1.16924161103864e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.16924161103864e-07!GO:0048475;coated membrane;1.21648104181362e-07!GO:0030117;membrane coat;1.21648104181362e-07!GO:0009141;nucleoside triphosphate metabolic process;1.2261763306513e-07!GO:0019787;small conjugating protein ligase activity;1.47883283973238e-07!GO:0006399;tRNA metabolic process;1.69598360012071e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.69821592610052e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.69821592610052e-07!GO:0043412;biopolymer modification;1.92406160287392e-07!GO:0044427;chromosomal part;2.06770516156127e-07!GO:0006333;chromatin assembly or disassembly;2.07505584049932e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.50423358309041e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.50423358309041e-07!GO:0006364;rRNA processing;2.84274714957548e-07!GO:0031324;negative regulation of cellular metabolic process;2.85748377935157e-07!GO:0003697;single-stranded DNA binding;3.90556881345196e-07!GO:0009060;aerobic respiration;4.01977867000876e-07!GO:0046930;pore complex;4.09004231134003e-07!GO:0005768;endosome;4.45003425824452e-07!GO:0016072;rRNA metabolic process;5.63923015757573e-07!GO:0043566;structure-specific DNA binding;5.67729298392505e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.90646485046488e-07!GO:0045333;cellular respiration;6.60789356378369e-07!GO:0046034;ATP metabolic process;7.0905276215477e-07!GO:0016881;acid-amino acid ligase activity;7.20499671396768e-07!GO:0019829;cation-transporting ATPase activity;8.51997125980264e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.04103634410469e-06!GO:0043038;amino acid activation;1.15905709741909e-06!GO:0006418;tRNA aminoacylation for protein translation;1.15905709741909e-06!GO:0043039;tRNA aminoacylation;1.15905709741909e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.18834486153074e-06!GO:0000279;M phase;1.1954053678567e-06!GO:0051170;nuclear import;1.20783907653579e-06!GO:0006754;ATP biosynthetic process;1.28101853802014e-06!GO:0006753;nucleoside phosphate metabolic process;1.28101853802014e-06!GO:0003924;GTPase activity;1.3665330051458e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.44985857919637e-06!GO:0051246;regulation of protein metabolic process;1.48114248434157e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.5036829495685e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.5036829495685e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.5036829495685e-06!GO:0043069;negative regulation of programmed cell death;1.83901736215554e-06!GO:0005773;vacuole;1.86947908512667e-06!GO:0006606;protein import into nucleus;2.07922726414491e-06!GO:0016491;oxidoreductase activity;2.07922726414491e-06!GO:0006464;protein modification process;2.12394304492259e-06!GO:0044431;Golgi apparatus part;2.17483721833721e-06!GO:0051188;cofactor biosynthetic process;2.47857800065628e-06!GO:0050794;regulation of cellular process;2.60840614272931e-06!GO:0015630;microtubule cytoskeleton;2.62859079219648e-06!GO:0051187;cofactor catabolic process;3.00713593476303e-06!GO:0016853;isomerase activity;3.40955612052478e-06!GO:0005667;transcription factor complex;3.47021480089189e-06!GO:0043066;negative regulation of apoptosis;3.63746337310378e-06!GO:0051028;mRNA transport;3.78920152368964e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.09630246392017e-06!GO:0043067;regulation of programmed cell death;4.27967051633316e-06!GO:0042981;regulation of apoptosis;4.32778467060798e-06!GO:0009892;negative regulation of metabolic process;4.45093802671224e-06!GO:0006613;cotranslational protein targeting to membrane;4.54987044913078e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.84592447583063e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.46493076784766e-06!GO:0006916;anti-apoptosis;6.08133249772488e-06!GO:0000245;spliceosome assembly;6.56675666433453e-06!GO:0006099;tricarboxylic acid cycle;7.04203121042158e-06!GO:0046356;acetyl-CoA catabolic process;7.04203121042158e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.13913727034229e-06!GO:0005798;Golgi-associated vesicle;8.76052817262229e-06!GO:0009109;coenzyme catabolic process;1.00720783532095e-05!GO:0016859;cis-trans isomerase activity;1.00720783532095e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.00988363601844e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.01069802306163e-05!GO:0005770;late endosome;1.0128177558234e-05!GO:0000785;chromatin;1.0802469204023e-05!GO:0005525;GTP binding;1.11771980955953e-05!GO:0006752;group transfer coenzyme metabolic process;1.14861478347437e-05!GO:0008361;regulation of cell size;1.18472139301827e-05!GO:0006334;nucleosome assembly;1.42900398663335e-05!GO:0031252;leading edge;1.44874825867243e-05!GO:0016787;hydrolase activity;1.4851598287884e-05!GO:0016049;cell growth;1.55033307268033e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.6508907020329e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.68417027581385e-05!GO:0004298;threonine endopeptidase activity;1.92535507688806e-05!GO:0003724;RNA helicase activity;2.13097599618068e-05!GO:0000323;lytic vacuole;2.2804867846201e-05!GO:0005764;lysosome;2.2804867846201e-05!GO:0007005;mitochondrion organization and biogenesis;2.35754285871962e-05!GO:0008654;phospholipid biosynthetic process;2.50433497516934e-05!GO:0005581;collagen;2.55739053652072e-05!GO:0051789;response to protein stimulus;2.74613266776541e-05!GO:0006986;response to unfolded protein;2.74613266776541e-05!GO:0016779;nucleotidyltransferase activity;2.78515044779677e-05!GO:0045259;proton-transporting ATP synthase complex;2.86802625409391e-05!GO:0043623;cellular protein complex assembly;2.97572514666555e-05!GO:0006084;acetyl-CoA metabolic process;3.23376634667749e-05!GO:0044440;endosomal part;3.38982556211174e-05!GO:0010008;endosome membrane;3.38982556211174e-05!GO:0009108;coenzyme biosynthetic process;3.4353471509294e-05!GO:0001558;regulation of cell growth;3.49554681608265e-05!GO:0043687;post-translational protein modification;3.91144189957468e-05!GO:0005583;fibrillar collagen;3.94549583720032e-05!GO:0005813;centrosome;4.09685406925326e-05!GO:0009117;nucleotide metabolic process;4.42869899336124e-05!GO:0045786;negative regulation of progression through cell cycle;4.45658935843302e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.71333568144208e-05!GO:0016568;chromatin modification;4.81037952867406e-05!GO:0031497;chromatin assembly;4.95718080503115e-05!GO:0031988;membrane-bound vesicle;4.99469750879632e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.99469750879632e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.69290672072359e-05!GO:0005819;spindle;6.20780063672578e-05!GO:0032446;protein modification by small protein conjugation;6.30724941909568e-05!GO:0000139;Golgi membrane;6.74132233343631e-05!GO:0016564;transcription repressor activity;6.80890910750953e-05!GO:0030867;rough endoplasmic reticulum membrane;6.97252627563084e-05!GO:0016567;protein ubiquitination;8.74698593745909e-05!GO:0005815;microtubule organizing center;8.92812768713367e-05!GO:0003714;transcription corepressor activity;9.46481178180545e-05!GO:0051427;hormone receptor binding;9.85625175463893e-05!GO:0051168;nuclear export;0.00012378337839441!GO:0005048;signal sequence binding;0.000123906648118475!GO:0044262;cellular carbohydrate metabolic process;0.000130174725796409!GO:0032561;guanyl ribonucleotide binding;0.000134640585680764!GO:0019001;guanyl nucleotide binding;0.000134640585680764!GO:0005769;early endosome;0.000141307958354191!GO:0019843;rRNA binding;0.000157075843094012!GO:0051329;interphase of mitotic cell cycle;0.000157876042619093!GO:0005762;mitochondrial large ribosomal subunit;0.000157876042619093!GO:0000315;organellar large ribosomal subunit;0.000157876042619093!GO:0000151;ubiquitin ligase complex;0.000176081296811275!GO:0016563;transcription activator activity;0.000181741177327806!GO:0016481;negative regulation of transcription;0.000182379508555121!GO:0043021;ribonucleoprotein binding;0.000206826309246978!GO:0035257;nuclear hormone receptor binding;0.000209091119742174!GO:0003899;DNA-directed RNA polymerase activity;0.000209091119742174!GO:0050789;regulation of biological process;0.00021608542641096!GO:0003713;transcription coactivator activity;0.000217372369281564!GO:0045454;cell redox homeostasis;0.000218193547154473!GO:0006091;generation of precursor metabolites and energy;0.000218960101946087!GO:0030663;COPI coated vesicle membrane;0.000228297618222135!GO:0030126;COPI vesicle coat;0.000228297618222135!GO:0033116;ER-Golgi intermediate compartment membrane;0.000238580255576656!GO:0000075;cell cycle checkpoint;0.000256448666826934!GO:0006612;protein targeting to membrane;0.000297945957181488!GO:0031982;vesicle;0.000342784113771329!GO:0005885;Arp2/3 protein complex;0.000369569368994255!GO:0031410;cytoplasmic vesicle;0.000390479858647807!GO:0015980;energy derivation by oxidation of organic compounds;0.000403863522422517!GO:0030133;transport vesicle;0.000467819515619878!GO:0051325;interphase;0.000473548792530286!GO:0046474;glycerophospholipid biosynthetic process;0.000505642272818127!GO:0019867;outer membrane;0.000529974040952074!GO:0008250;oligosaccharyl transferase complex;0.000530944780144221!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000543385552968747!GO:0006891;intra-Golgi vesicle-mediated transport;0.000634816458651767!GO:0008186;RNA-dependent ATPase activity;0.000648870953422751!GO:0030036;actin cytoskeleton organization and biogenesis;0.000662989675848473!GO:0016044;membrane organization and biogenesis;0.000691518096490133!GO:0044420;extracellular matrix part;0.000699722761926274!GO:0030880;RNA polymerase complex;0.000727534456217786!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00073501648318261!GO:0007051;spindle organization and biogenesis;0.000799220565468481!GO:0006950;response to stress;0.000816472414667113!GO:0005905;coated pit;0.000821298750550421!GO:0004576;oligosaccharyl transferase activity;0.000831383008900201!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000845142425425906!GO:0043681;protein import into mitochondrion;0.000845146871066737!GO:0030137;COPI-coated vesicle;0.000858810474248689!GO:0031968;organelle outer membrane;0.000868215761321513!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000940281056828475!GO:0005791;rough endoplasmic reticulum;0.00105659885412856!GO:0006261;DNA-dependent DNA replication;0.00105827051792436!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00117330933922479!GO:0051920;peroxiredoxin activity;0.00124803880462866!GO:0003690;double-stranded DNA binding;0.00132071754983408!GO:0006793;phosphorus metabolic process;0.00135372971488384!GO:0006796;phosphate metabolic process;0.00135372971488384!GO:0048500;signal recognition particle;0.00137593278671802!GO:0048522;positive regulation of cellular process;0.00140502649467191!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00143611709723207!GO:0005741;mitochondrial outer membrane;0.00151150875197936!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00160287263548944!GO:0040008;regulation of growth;0.00165469505281717!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00170267582537249!GO:0000428;DNA-directed RNA polymerase complex;0.00170267582537249!GO:0004004;ATP-dependent RNA helicase activity;0.00179035556577528!GO:0030027;lamellipodium;0.00183467415951964!GO:0016740;transferase activity;0.00189130234555905!GO:0007243;protein kinase cascade;0.00204320121334654!GO:0031072;heat shock protein binding;0.00204663363879138!GO:0030134;ER to Golgi transport vesicle;0.00213216263392056!GO:0000314;organellar small ribosomal subunit;0.00213216263392056!GO:0005763;mitochondrial small ribosomal subunit;0.00213216263392056!GO:0000059;protein import into nucleus, docking;0.00220768809844134!GO:0006818;hydrogen transport;0.00231536114914264!GO:0007010;cytoskeleton organization and biogenesis;0.00237693270214375!GO:0044452;nucleolar part;0.00247170802620982!GO:0030521;androgen receptor signaling pathway;0.00248276563706546!GO:0006402;mRNA catabolic process;0.00248736948675695!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00257625018328966!GO:0018196;peptidyl-asparagine modification;0.00258092065835589!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00258092065835589!GO:0007033;vacuole organization and biogenesis;0.00264155319175341!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00266816653835651!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00268331263624499!GO:0030658;transport vesicle membrane;0.0027982978891519!GO:0035258;steroid hormone receptor binding;0.00280288319597897!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00283175454388103!GO:0015992;proton transport;0.00287962246548828!GO:0003682;chromatin binding;0.00289976669809211!GO:0030127;COPII vesicle coat;0.0029472993748096!GO:0012507;ER to Golgi transport vesicle membrane;0.0029472993748096!GO:0000082;G1/S transition of mitotic cell cycle;0.00295529350558197!GO:0007006;mitochondrial membrane organization and biogenesis;0.00302652415926394!GO:0006626;protein targeting to mitochondrion;0.00314783027895879!GO:0019222;regulation of metabolic process;0.00320348943116441!GO:0046489;phosphoinositide biosynthetic process;0.00326874494968457!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00335653196904187!GO:0045047;protein targeting to ER;0.00335653196904187!GO:0030029;actin filament-based process;0.0033891613297121!GO:0016310;phosphorylation;0.00346812939588149!GO:0008094;DNA-dependent ATPase activity;0.0037591247212808!GO:0031418;L-ascorbic acid binding;0.00378031386323165!GO:0003729;mRNA binding;0.00379205309670693!GO:0006414;translational elongation;0.00398542747002952!GO:0051252;regulation of RNA metabolic process;0.00398614422310369!GO:0016363;nuclear matrix;0.00414363550812036!GO:0046483;heterocycle metabolic process;0.00431036750548718!GO:0045892;negative regulation of transcription, DNA-dependent;0.00453742749559359!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00455470745133315!GO:0007264;small GTPase mediated signal transduction;0.00455470745133315!GO:0016251;general RNA polymerase II transcription factor activity;0.00457711695878163!GO:0003684;damaged DNA binding;0.0048694997553685!GO:0008312;7S RNA binding;0.00488249881505279!GO:0048487;beta-tubulin binding;0.00491671459095009!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00494093817022297!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00494093817022297!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00494093817022297!GO:0019798;procollagen-proline dioxygenase activity;0.00500285027918827!GO:0045045;secretory pathway;0.0050684341358562!GO:0006979;response to oxidative stress;0.00509261851370794!GO:0048471;perinuclear region of cytoplasm;0.00523138552871678!GO:0043284;biopolymer biosynthetic process;0.00523138552871678!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00526134324262342!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00564449098639431!GO:0019899;enzyme binding;0.00580315159729416!GO:0030118;clathrin coat;0.00595307487288276!GO:0009165;nucleotide biosynthetic process;0.00604299590949221!GO:0045893;positive regulation of transcription, DNA-dependent;0.00607618503161075!GO:0007040;lysosome organization and biogenesis;0.00608004242073833!GO:0005869;dynactin complex;0.00638214914646756!GO:0000339;RNA cap binding;0.00647352390451449!GO:0006352;transcription initiation;0.00649259793036311!GO:0016408;C-acyltransferase activity;0.00658843029084287!GO:0046467;membrane lipid biosynthetic process;0.00671306654744989!GO:0006839;mitochondrial transport;0.00671306654744989!GO:0031543;peptidyl-proline dioxygenase activity;0.00727729648695!GO:0030660;Golgi-associated vesicle membrane;0.00727729648695!GO:0019752;carboxylic acid metabolic process;0.0072951278426122!GO:0007050;cell cycle arrest;0.007356893887717!GO:0000775;chromosome, pericentric region;0.00738997571217077!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00767062451540487!GO:0015399;primary active transmembrane transporter activity;0.00767062451540487!GO:0065009;regulation of a molecular function;0.00779660643327271!GO:0006405;RNA export from nucleus;0.00791567435323836!GO:0000786;nucleosome;0.00799516543172224!GO:0006383;transcription from RNA polymerase III promoter;0.00801346043948692!GO:0007052;mitotic spindle organization and biogenesis;0.00813267688598673!GO:0007034;vacuolar transport;0.00813781317002786!GO:0051101;regulation of DNA binding;0.00833701593178173!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00856680073077871!GO:0016126;sterol biosynthetic process;0.00865525954705972!GO:0001726;ruffle;0.00911742825975505!GO:0008092;cytoskeletal protein binding;0.00920070453108152!GO:0006082;organic acid metabolic process;0.00925543463827743!GO:0008139;nuclear localization sequence binding;0.00929725818847664!GO:0043488;regulation of mRNA stability;0.00935359845146734!GO:0043487;regulation of RNA stability;0.00935359845146734!GO:0005586;collagen type III;0.00944669679678811!GO:0048146;positive regulation of fibroblast proliferation;0.00956897519052587!GO:0003711;transcription elongation regulator activity;0.00990230698034077!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00990628261878111!GO:0050681;androgen receptor binding;0.00997548080791829!GO:0048144;fibroblast proliferation;0.00997548080791829!GO:0048145;regulation of fibroblast proliferation;0.00997548080791829!GO:0003746;translation elongation factor activity;0.0102116472659305!GO:0032508;DNA duplex unwinding;0.0106630702266546!GO:0032392;DNA geometric change;0.0106630702266546!GO:0008180;signalosome;0.0109119751966312!GO:0005862;muscle thin filament tropomyosin;0.0110075144828544!GO:0022890;inorganic cation transmembrane transporter activity;0.011203266292445!GO:0045936;negative regulation of phosphate metabolic process;0.0113565075343434!GO:0006611;protein export from nucleus;0.0113883783761144!GO:0005657;replication fork;0.0114208359964096!GO:0006650;glycerophospholipid metabolic process;0.0116544802139393!GO:0007041;lysosomal transport;0.0117233049284464!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0121129462017324!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0121129462017324!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0121129462017324!GO:0017166;vinculin binding;0.0122686963431248!GO:0030199;collagen fibril organization;0.0122801047879204!GO:0007093;mitotic cell cycle checkpoint;0.0128077917924204!GO:0051052;regulation of DNA metabolic process;0.0132423979278161!GO:0009225;nucleotide-sugar metabolic process;0.0135822920581767!GO:0003678;DNA helicase activity;0.013763067161076!GO:0006302;double-strand break repair;0.0140228847454318!GO:0045941;positive regulation of transcription;0.0140311122516865!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0144786217741806!GO:0009967;positive regulation of signal transduction;0.0147268538889223!GO:0009112;nucleobase metabolic process;0.0149085088439938!GO:0030659;cytoplasmic vesicle membrane;0.0150716927908888!GO:0006401;RNA catabolic process;0.0151997563704!GO:0006607;NLS-bearing substrate import into nucleus;0.0152126110374595!GO:0000776;kinetochore;0.0154609749713455!GO:0050811;GABA receptor binding;0.0154796096714266!GO:0008154;actin polymerization and/or depolymerization;0.0155602941084184!GO:0051087;chaperone binding;0.01582589630497!GO:0007088;regulation of mitosis;0.0160729722101654!GO:0030518;steroid hormone receptor signaling pathway;0.01620084084828!GO:0005832;chaperonin-containing T-complex;0.0165123590591819!GO:0031124;mRNA 3'-end processing;0.0169277930630203!GO:0000049;tRNA binding;0.0179657795851892!GO:0008283;cell proliferation;0.0180287412314448!GO:0030176;integral to endoplasmic reticulum membrane;0.0187640949844874!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0194962985194393!GO:0003756;protein disulfide isomerase activity;0.0195351441908594!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0195351441908594!GO:0008033;tRNA processing;0.0195351441908594!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0196060744751825!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0196060744751825!GO:0006275;regulation of DNA replication;0.0196132089497676!GO:0043022;ribosome binding;0.0197488150296143!GO:0004527;exonuclease activity;0.019819595716742!GO:0015631;tubulin binding;0.0198381843634253!GO:0006506;GPI anchor biosynthetic process;0.0204491071846419!GO:0045792;negative regulation of cell size;0.0205140631921856!GO:0006268;DNA unwinding during replication;0.0208522384480376!GO:0005801;cis-Golgi network;0.0212694605879617!GO:0043433;negative regulation of transcription factor activity;0.0218001145121734!GO:0030132;clathrin coat of coated pit;0.0228763643742797!GO:0051128;regulation of cellular component organization and biogenesis;0.0233519371947825!GO:0006595;polyamine metabolic process;0.0233519371947825!GO:0030119;AP-type membrane coat adaptor complex;0.0233888421995341!GO:0065007;biological regulation;0.0235315509878372!GO:0042326;negative regulation of phosphorylation;0.0236070520934358!GO:0006505;GPI anchor metabolic process;0.0238057464846481!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0240357219731714!GO:0009116;nucleoside metabolic process;0.0240901657084118!GO:0005975;carbohydrate metabolic process;0.0244487073921364!GO:0006497;protein amino acid lipidation;0.0244770141744674!GO:0007030;Golgi organization and biogenesis;0.0245360585012326!GO:0008047;enzyme activator activity;0.0253447461998098!GO:0005684;U2-dependent spliceosome;0.025345124801077!GO:0051098;regulation of binding;0.0257181733569858!GO:0032940;secretion by cell;0.0257864442575413!GO:0008147;structural constituent of bone;0.0259588499081449!GO:0030308;negative regulation of cell growth;0.0260666153645882!GO:0006007;glucose catabolic process;0.0272549514366162!GO:0032507;maintenance of cellular protein localization;0.0275525934571986!GO:0006897;endocytosis;0.0279556026002024!GO:0010324;membrane invagination;0.0279556026002024!GO:0022415;viral reproductive process;0.0282848014738169!GO:0035035;histone acetyltransferase binding;0.0287672882179989!GO:0005874;microtubule;0.0290960215609208!GO:0031901;early endosome membrane;0.0300443023968577!GO:0006310;DNA recombination;0.0305777728666945!GO:0005669;transcription factor TFIID complex;0.0314134450528448!GO:0044433;cytoplasmic vesicle part;0.0322398733861827!GO:0005774;vacuolar membrane;0.0326352839858486!GO:0051235;maintenance of localization;0.0326352839858486!GO:0033673;negative regulation of kinase activity;0.0327293086719119!GO:0006469;negative regulation of protein kinase activity;0.0327293086719119!GO:0030384;phosphoinositide metabolic process;0.0340322137430693!GO:0000209;protein polyubiquitination;0.034265243529047!GO:0006354;RNA elongation;0.0344187663417131!GO:0042802;identical protein binding;0.0345929302553753!GO:0051348;negative regulation of transferase activity;0.0345965366475402!GO:0030131;clathrin adaptor complex;0.0351524969278649!GO:0008538;proteasome activator activity;0.0351614595609243!GO:0048518;positive regulation of biological process;0.0352686663863464!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0360945562826934!GO:0015002;heme-copper terminal oxidase activity;0.0360945562826934!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0360945562826934!GO:0004129;cytochrome-c oxidase activity;0.0360945562826934!GO:0031123;RNA 3'-end processing;0.0361067116284862!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0361445744751083!GO:0033043;regulation of organelle organization and biogenesis;0.0361445744751083!GO:0005784;translocon complex;0.036566986499472!GO:0016860;intramolecular oxidoreductase activity;0.0375015031839187!GO:0008610;lipid biosynthetic process;0.0379450766913874!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0382548520516925!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0382548520516925!GO:0043492;ATPase activity, coupled to movement of substances;0.0386810195609386!GO:0051059;NF-kappaB binding;0.0389056933446688!GO:0030934;anchoring collagen;0.0389623596171186!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.039121220161746!GO:0006376;mRNA splice site selection;0.039121220161746!GO:0000389;nuclear mRNA 3'-splice site recognition;0.039121220161746!GO:0006509;membrane protein ectodomain proteolysis;0.0391643992667745!GO:0033619;membrane protein proteolysis;0.0391643992667745!GO:0031902;late endosome membrane;0.0393250938530076!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0400969732365322!GO:0051540;metal cluster binding;0.0402839439709252!GO:0051536;iron-sulfur cluster binding;0.0402839439709252!GO:0006984;ER-nuclear signaling pathway;0.040387234342653!GO:0000118;histone deacetylase complex;0.0404172982470178!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0404172982470178!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0408102639622202!GO:0032984;macromolecular complex disassembly;0.041048890329917!GO:0030433;ER-associated protein catabolic process;0.0412974725825973!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0412974725825973!GO:0046870;cadmium ion binding;0.0419171703272839!GO:0006289;nucleotide-excision repair;0.0420934542409838!GO:0006144;purine base metabolic process;0.042128667507468!GO:0004248;stromelysin 1 activity;0.0421579164889167!GO:0005584;collagen type I;0.042612425260046!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0430678770117874!GO:0006778;porphyrin metabolic process;0.0430678770117874!GO:0033013;tetrapyrrole metabolic process;0.0430678770117874!GO:0045185;maintenance of protein localization;0.0435391248779231!GO:0000086;G2/M transition of mitotic cell cycle;0.0437405876255393!GO:0016197;endosome transport;0.0440491077587225!GO:0004003;ATP-dependent DNA helicase activity;0.0440570218332414!GO:0043130;ubiquitin binding;0.0443734848691748!GO:0032182;small conjugating protein binding;0.0443734848691748!GO:0030149;sphingolipid catabolic process;0.0443734848691748!GO:0008320;protein transmembrane transporter activity;0.0443734848691748!GO:0043189;H4/H2A histone acetyltransferase complex;0.0453912966924952!GO:0035267;NuA4 histone acetyltransferase complex;0.0457420137891896!GO:0047485;protein N-terminus binding;0.0458109102063974!GO:0042168;heme metabolic process;0.0461838285527735!GO:0006284;base-excision repair;0.0469125240892052!GO:0008168;methyltransferase activity;0.0471703739093597!GO:0030032;lamellipodium biogenesis;0.0474512771691607!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0476763557911957!GO:0051651;maintenance of cellular localization;0.0476763557911957!GO:0006643;membrane lipid metabolic process;0.0476763557911957!GO:0006695;cholesterol biosynthetic process;0.0477471544878783!GO:0005315;inorganic phosphate transmembrane transporter activity;0.0482783065444163!GO:0006790;sulfur metabolic process;0.0483046525843317!GO:0008022;protein C-terminus binding;0.0485379391120708!GO:0006417;regulation of translation;0.0491433414884984
|sample_id=11339
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cartilage
|top_motifs=SMAD1..7,9:2.33979718205;HES1:1.94936984563;ALX4:1.89657869012;ZNF238:1.73631014712;EBF1:1.71936544178;TAL1_TCF{3,4,12}:1.5895641657;NR1H4:1.40745399791;HMX1:1.34509633522;ATF6:1.30905026775;TFCP2:1.2896905626;NANOG{mouse}:1.27043069826;HOX{A4,D4}:1.25846888331;NFATC1..3:1.23706080882;MAFB:1.17414561977;AR:1.15000699314;PAX4:1.03252903134;PRDM1:1.03071045878;EN1,2:1.03042457618;HMGA1,2:1.00456047603;NR6A1:0.991954237372;TLX1..3_NFIC{dimer}:0.951018213327;TLX2:0.94365136452;TBP:0.904956761478;TFAP4:0.898202036912;RXRA_VDR{dimer}:0.897821356814;TBX4,5:0.872433030782;ONECUT1,2:0.809479755945;EVI1:0.798371863021;GLI1..3:0.751351138987;HIF1A:0.750085628574;STAT1,3:0.687985272115;POU3F1..4:0.681899924671;DBP:0.665102677158;NFE2L2:0.652025545587;NFIX:0.643464268996;XBP1:0.640803846411;MTF1:0.640451006966;HAND1,2:0.617818933065;MYFfamily:0.616077392504;ZNF423:0.591437973373;PRRX1,2:0.568810624884;YY1:0.562135466082;STAT2,4,6:0.558105838129;GTF2A1,2:0.513400399671;GFI1:0.506738869048;GTF2I:0.503864235676;NR3C1:0.487441837084;LEF1_TCF7_TCF7L1,2:0.48533276271;MYBL2:0.441885415928;ESR1:0.429509715428;HOX{A5,B5}:0.426798382043;PBX1:0.411367788385;UFEwm:0.394553459702;FOXA2:0.383591902898;MAZ:0.382294414611;HBP1_HMGB_SSRP1_UBTF:0.373929784889;AHR_ARNT_ARNT2:0.371652687461;GFI1B:0.360670255385;HLF:0.337360587642;TEAD1:0.326079815598;PAX8:0.323758132706;RXR{A,B,G}:0.314948965835;FOXN1:0.294355325392;EP300:0.291944473617;JUN:0.290058805842;KLF4:0.284105582846;MTE{core}:0.267887585327;RFX1:0.253889241096;MEF2{A,B,C,D}:0.251458178224;NKX2-1,4:0.249149655334;HSF1,2:0.247814041149;MYB:0.24203389496;FOS_FOS{B,L1}_JUN{B,D}:0.232110732271;PPARG:0.225418787932;FOSL2:0.207025369647;CDC5L:0.195491341847;HNF1A:0.188829192339;BACH2:0.161149555519;ZNF148:0.15066936022;GCM1,2:0.148280130346;RUNX1..3:0.137888819956;ALX1:0.129985673751;MZF1:0.129909113257;CEBPA,B_DDIT3:0.108189816261;MED-1{core}:0.102111673173;SOX17:0.0998612799729;ELK1,4_GABP{A,B1}:0.0843330674363;NFIL3:0.0777369055335;TP53:0.0702832504817;TFAP2{A,C}:0.0680778933681;RREB1:0.0672144261002;POU5F1:0.0612509487967;IKZF1:0.0390044076305;E2F1..5:0.0383227417446;NHLH1,2:0.0325806922894;ZNF384:0.0298055348882;REST:0.00912533413863;PAX6:-0.00207317037274;POU1F1:-0.00472016034377;LHX3,4:-0.0403040589524;HIC1:-0.0571703848168;PAX1,9:-0.0572522644248;SPZ1:-0.0748271010773;NFE2:-0.0814177651096;PAX3,7:-0.0921804949902;RORA:-0.0960877439325;POU6F1:-0.105749628674;SREBF1,2:-0.126046140902;VSX1,2:-0.148897262787;SOX2:-0.156981626339;ELF1,2,4:-0.158968159448;TFDP1:-0.168183513068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.177374152782;NKX2-3_NKX2-5:-0.177660631364;NFKB1_REL_RELA:-0.178189760098;PAX5:-0.191752651936;ZNF143:-0.196070938094;DMAP1_NCOR{1,2}_SMARC:-0.198602508303;NFY{A,B,C}:-0.215516461266;SRF:-0.232518462379;PAX2:-0.241519468569;FOX{F1,F2,J1}:-0.248800200461;TFAP2B:-0.289963893606;ZIC1..3:-0.304129677322;ESRRA:-0.317733156144;IRF7:-0.344354933976;NKX2-2,8:-0.351740228418;NANOG:-0.36147006342;XCPE1{core}:-0.363518239761;NRF1:-0.371800928209;CUX2:-0.372993780961;GATA6:-0.383068766822;NR5A1,2:-0.395662764129;IRF1,2:-0.40396078963;ZFP161:-0.410522326996;PATZ1:-0.413794207508;NKX3-2:-0.414302500382;GATA4:-0.418393183745;ATF5_CREB3:-0.422029690005;RBPJ:-0.423357641234;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.427837100867;ETS1,2:-0.430138748805;ZBTB6:-0.430958742792;CRX:-0.437217094085;ADNP_IRX_SIX_ZHX:-0.456749923652;HOX{A6,A7,B6,B7}:-0.457662810839;BPTF:-0.465131915579;SOX{8,9,10}:-0.476000414568;TEF:-0.482153609006;STAT5{A,B}:-0.488353305365;LMO2:-0.489661173956;NFE2L1:-0.512760424625;PDX1:-0.526483338664;SPI1:-0.526744792574;FOX{D1,D2}:-0.544463574846;RFX2..5_RFXANK_RFXAP:-0.546443650932;NKX6-1,2:-0.546555689926;GZF1:-0.548788186701;TOPORS:-0.586207066889;SPIB:-0.600798910086;OCT4_SOX2{dimer}:-0.606667065236;ATF2:-0.624646001143;HNF4A_NR2F1,2:-0.642263615311;bHLH_family:-0.650515918268;T:-0.658589850925;ATF4:-0.669414322372;EGR1..3:-0.678435043956;FOXD3:-0.710006363012;TGIF1:-0.721341108035;AIRE:-0.745546158287;CREB1:-0.789306286158;FOXP3:-0.814924569275;ZEB1:-0.830999134261;SNAI1..3:-0.833397203435;FOXO1,3,4:-0.837095570003;BREu{core}:-0.858425635895;NKX3-1:-0.9361072186;SOX5:-1.03821148511;SP1:-1.07455215661;ARID5B:-1.08500381542;HOXA9_MEIS1:-1.11471247933;FOXL1:-1.16329007277;CDX1,2,4:-1.16465261769;FOX{I1,J2}:-1.19462323226;MYOD1:-1.19551236855;IKZF2:-1.22028216546;PITX1..3:-1.25717112619;POU2F1..3:-1.25996416462;FOXP1:-1.31624231409;FOXM1:-1.34949913004;ZBTB16:-1.53307924087;FOXQ1:-1.63376333752
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11339-117F7;search_select_hide=table117:FF:11339-117F7
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Chondrocyte - re diff, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11373
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecartilage
dev stage60 years old adult
sexmale
age60
cell typechondrocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1662
catalog numberCA402RD-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005779
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11373 CAGE DRX008204 DRR009076
Accession ID Hg19

Library idBAMCTSS
CNhs11373 DRZ000501 DRZ001886
Accession ID Hg38

Library idBAMCTSS
CNhs11373 DRZ011851 DRZ013236
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005779
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.CTTGTA sRNA-Seq DRX037191 DRR041557
Accession ID Hg19

Library idBAMCTSS
SRhi10012.CTTGTA DRZ007199


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.216
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.168
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0983
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.23
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.254
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0397
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.176
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.254
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.413
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0869
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.867
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.254
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0458
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0548
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.575
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.254
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal1.137
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.912
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.53
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.53
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.621
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.952
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11373

Jaspar motifP-value
MA0002.20.314
MA0003.10.216
MA0004.10.0529
MA0006.10.194
MA0007.10.508
MA0009.10.125
MA0014.10.13
MA0017.10.767
MA0018.20.00229
MA0019.10.83
MA0024.10.166
MA0025.10.063
MA0027.10.715
MA0028.10.262
MA0029.10.105
MA0030.10.464
MA0031.10.554
MA0035.20.00196
MA0038.10.546
MA0039.20.0466
MA0040.10.9
MA0041.10.449
MA0042.10.963
MA0043.10.0111
MA0046.10.906
MA0047.20.212
MA0048.10.927
MA0050.10.00104
MA0051.10.0497
MA0052.10.465
MA0055.10.478
MA0057.10.528
MA0058.10.0698
MA0059.10.687
MA0060.10.0283
MA0061.10.744
MA0062.20.00101
MA0065.20.798
MA0066.10.876
MA0067.10.077
MA0068.10.14
MA0069.10.117
MA0070.10.587
MA0071.10.719
MA0072.10.96
MA0073.10.333
MA0074.10.954
MA0076.10.0846
MA0077.10.104
MA0078.10.965
MA0079.20.294
MA0080.20.00805
MA0081.10.135
MA0083.10.768
MA0084.10.443
MA0087.10.476
MA0088.10.622
MA0090.10.369
MA0091.10.0582
MA0092.10.104
MA0093.10.0904
MA0099.28.60763e-4
MA0100.10.888
MA0101.10.662
MA0102.20.0897
MA0103.10.00288
MA0104.20.0993
MA0105.10.177
MA0106.10.948
MA0107.10.645
MA0108.20.00632
MA0111.10.311
MA0112.27.03694e-4
MA0113.10.172
MA0114.10.671
MA0115.10.39
MA0116.10.0375
MA0117.10.761
MA0119.10.486
MA0122.10.727
MA0124.10.736
MA0125.10.404
MA0131.10.34
MA0135.10.453
MA0136.10.0534
MA0137.20.109
MA0138.20.282
MA0139.10.644
MA0140.10.194
MA0141.10.674
MA0142.10.25
MA0143.10.905
MA0144.10.315
MA0145.10.03
MA0146.10.745
MA0147.10.21
MA0148.10.0563
MA0149.10.636
MA0150.10.943
MA0152.13.60193e-5
MA0153.10.2
MA0154.10.0269
MA0155.10.268
MA0156.10.0359
MA0157.10.779
MA0159.10.4
MA0160.10.79
MA0162.10.236
MA0163.11.07245e-4
MA0164.10.583
MA0258.10.27
MA0259.10.393



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11373

Novel motifP-value
10.58
100.855
1000.459
1010.88
1020.159
1030.0134
1040.449
1050.0042
1060.267
1070.0195
1080.975
1090.675
110.379
1100.641
1110.826
1120.34
1130.495
1140.23
1150.859
1160.119
1170.396
1180.238
1190.867
120.944
1200.886
1210.412
1220.2
1230.121
1240.59
1250.815
1260.892
1270.959
1280.0339
1290.854
130.596
1300.652
1310.11
1320.811
1330.61
1340.324
1350.178
1360.0595
1370.896
1380.562
1390.456
140.482
1400.55
1410.366
1420.301
1430.466
1440.336
1450.862
1460.234
1470.815
1480.487
1490.00526
150.0848
1500.57
1510.415
1520.277
1530.819
1540.776
1550.223
1560.985
1570.755
1580.053
1590.292
160.0608
1600.874
1610.552
1620.812
1630.577
1640.401
1650.415
1660.0163
1670.86
1680.63
1690.0113
170.634
180.19
190.0294
20.156
200.0459
210.462
220.172
230.0557
240.775
250.731
260.998
270.248
280.92
290.924
30.461
300.263
310.783
321.81672e-7
330.834
340.166
350.501
360.687
370.539
380.563
390.275
40.448
400.969
410.717
420.929
430.326
440.734
450.306
460.254
470.939
480.586
490.546
50.144
500.898
510.586
520.336
530.787
540.591
550.356
560.882
570.643
580.916
590.0187
60.295
600.137
610.696
620.32
630.482
640.959
650.282
660.853
670.383
680.678
690.559
70.178
700.356
710.141
720.662
730.481
740.304
750.966
760.666
770.00168
780.714
790.00692
80.486
800.237
810.497
820.27
830.667
840.404
850.071
860.213
870.556
880.223
890.131
90.082
900.566
910.38
920.106
930.0589
940.41
950.413
960.247
970.0885
980.967
990.187



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11373


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000245 (human chondrocyte re-differentiated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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