FF:10816-111B6: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2
Species:	Human (Homo sapiens)
Library ID:	CNhs12326
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	NA
cell type	epithelial cell
cell line	HelaS3
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005737

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12326		CAGE		DRX007883		DRR008755

Accession ID Hg19

Library id		BAM		CTSS
CNhs12326		DRZ000180		DRZ001565

Accession ID Hg38

Library id		BAM		CTSS
CNhs12326		DRZ011530		DRZ012915

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0593
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.351
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.66
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0.681
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00756
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.11
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0306
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.098
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0796
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0593
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0593
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.689
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.00215
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0306
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00368
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0252
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.573
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.0593
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12326

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00359
MA0003.1	MA0003.1	0.198
MA0004.1	MA0004.1	0.234
MA0006.1	MA0006.1	0.69
MA0007.1	MA0007.1	0.516
MA0009.1	MA0009.1	0.239
MA0014.1	MA0014.1	0.988
MA0017.1	MA0017.1	0.924
MA0018.2	MA0018.2	0.125
MA0019.1	MA0019.1	0.604
MA0024.1	MA0024.1	1.71968e-7
MA0025.1	MA0025.1	0.347
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	1.48236e-7
MA0029.1	MA0029.1	0.00782
MA0030.1	MA0030.1	0.0553
MA0031.1	MA0031.1	0.1
MA0035.2	MA0035.2	0.00664
MA0038.1	MA0038.1	0.0475
MA0039.2	MA0039.2	0.0355
MA0040.1	MA0040.1	0.594
MA0041.1	MA0041.1	0.834
MA0042.1	MA0042.1	0.982
MA0043.1	MA0043.1	0.202
MA0046.1	MA0046.1	0.402
MA0047.2	MA0047.2	0.571
MA0048.1	MA0048.1	0.00436
MA0050.1	MA0050.1	0.179
MA0051.1	MA0051.1	0.667
MA0052.1	MA0052.1	0.00416
MA0055.1	MA0055.1	5.09693e-4
MA0057.1	MA0057.1	0.884
MA0058.1	MA0058.1	0.0896
MA0059.1	MA0059.1	0.224
MA0060.1	MA0060.1	2.44512e-16
MA0061.1	MA0061.1	0.0247
MA0062.2	MA0062.2	4.61386e-6
MA0065.2	MA0065.2	0.175
MA0066.1	MA0066.1	0.176
MA0067.1	MA0067.1	0.506
MA0068.1	MA0068.1	0.342
MA0069.1	MA0069.1	0.833
MA0070.1	MA0070.1	0.0694
MA0071.1	MA0071.1	0.399
MA0072.1	MA0072.1	0.117
MA0073.1	MA0073.1	0.299
MA0074.1	MA0074.1	0.86
MA0076.1	MA0076.1	5.60663e-7
MA0077.1	MA0077.1	0.994
MA0078.1	MA0078.1	0.172
MA0079.2	MA0079.2	0.805
MA0080.2	MA0080.2	2.27289e-7
MA0081.1	MA0081.1	0.413
MA0083.1	MA0083.1	0.013
MA0084.1	MA0084.1	0.806
MA0087.1	MA0087.1	0.818
MA0088.1	MA0088.1	0.0121
MA0090.1	MA0090.1	0.363
MA0091.1	MA0091.1	0.0214
MA0092.1	MA0092.1	0.266
MA0093.1	MA0093.1	0.154
MA0099.2	MA0099.2	0.139
MA0100.1	MA0100.1	0.314
MA0101.1	MA0101.1	0.452
MA0102.2	MA0102.2	0.0948
MA0103.1	MA0103.1	0.468
MA0104.2	MA0104.2	0.00846
MA0105.1	MA0105.1	0.064
MA0106.1	MA0106.1	0.566
MA0107.1	MA0107.1	0.157
MA0108.2	MA0108.2	0.935
MA0111.1	MA0111.1	0.832
MA0112.2	MA0112.2	0.245
MA0113.1	MA0113.1	0.592
MA0114.1	MA0114.1	0.156
MA0115.1	MA0115.1	0.0105
MA0116.1	MA0116.1	0.589
MA0117.1	MA0117.1	0.673
MA0119.1	MA0119.1	0.731
MA0122.1	MA0122.1	0.345
MA0124.1	MA0124.1	0.889
MA0125.1	MA0125.1	0.344
MA0131.1	MA0131.1	0.0475
MA0135.1	MA0135.1	0.339
MA0136.1	MA0136.1	0.0293
MA0137.2	MA0137.2	0.624
MA0138.2	MA0138.2	0.0107
MA0139.1	MA0139.1	0.77
MA0140.1	MA0140.1	9.02818e-4
MA0141.1	MA0141.1	0.289
MA0142.1	MA0142.1	0.992
MA0143.1	MA0143.1	0.0973
MA0144.1	MA0144.1	0.542
MA0145.1	MA0145.1	0.475
MA0146.1	MA0146.1	0.351
MA0147.1	MA0147.1	0.0135
MA0148.1	MA0148.1	0.448
MA0149.1	MA0149.1	0.0649
MA0150.1	MA0150.1	0.585
MA0152.1	MA0152.1	0.523
MA0153.1	MA0153.1	0.736
MA0154.1	MA0154.1	0.0495
MA0155.1	MA0155.1	0.023
MA0156.1	MA0156.1	0.44
MA0157.1	MA0157.1	0.342
MA0159.1	MA0159.1	0.819
MA0160.1	MA0160.1	0.236
MA0162.1	MA0162.1	0.299
MA0163.1	MA0163.1	0.645
MA0164.1	MA0164.1	0.737
MA0258.1	MA0258.1	0.349
MA0259.1	MA0259.1	0.124

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12326

Novel motif	Logo	P-value
1	1	0.561
10	10	0.127
100	100	0.176
101	101	0.805
102	102	0.861
103	103	0.0388
104	104	0.969
105	105	0.329
106	106	0.00529
107	107	0.0332
108	108	0.222
109	109	0.207
11	11	0.423
110	110	0.6
111	111	0.688
112	112	0.00119
113	113	0.0166
114	114	0.511
115	115	0.519
116	116	0.916
117	117	0.156
118	118	0.649
119	119	0.466
12	12	0.96
120	120	0.741
121	121	0.526
122	122	0.505
123	123	0.598
124	124	0.494
125	125	0.349
126	126	0.805
127	127	0.87
128	128	0.00257
129	129	0.373
13	13	0.001
130	130	0.0217
131	131	0.0958
132	132	0.745
133	133	0.305
134	134	0.282
135	135	0.057
136	136	0.0358
137	137	0.189
138	138	0.544
139	139	0.221
14	14	0.386
140	140	0.714
141	141	0.456
142	142	0.389
143	143	0.6
144	144	0.489
145	145	0.21
146	146	0.518
147	147	0.48
148	148	0.711
149	149	0.0298
15	15	0.56
150	150	0.877
151	151	0.649
152	152	0.0594
153	153	0.284
154	154	0.726
155	155	0.976
156	156	0.565
157	157	0.382
158	158	0.188
159	159	0.337
16	16	0.458
160	160	0.418
161	161	0.481
162	162	0.6
163	163	0.763
164	164	0.947
165	165	0.611
166	166	0.254
167	167	0.271
168	168	0.547
169	169	0.464
17	17	0.369
18	18	0.161
19	19	0.179
2	2	0.0976
20	20	0.0367
21	21	0.802
22	22	0.475
23	23	7.2037e-4
24	24	0.51
25	25	0.795
26	26	0.962
27	27	0.127
28	28	0.549
29	29	0.115
3	3	0.494
30	30	0.133
31	31	0.238
32	32	0.0364
33	33	0.491
34	34	0.146
35	35	0.575
36	36	0.277
37	37	0.942
38	38	0.976
39	39	0.636
4	4	0.39
40	40	0.283
41	41	0.237
42	42	0.862
43	43	0.334
44	44	0.73
45	45	0.297
46	46	0.313
47	47	0.91
48	48	0.972
49	49	0.653
5	5	0.339
50	50	0.918
51	51	0.242
52	52	0.143
53	53	0.361
54	54	0.398
55	55	0.0178
56	56	0.458
57	57	0.938
58	58	0.776
59	59	0.232
6	6	0.905
60	60	0.126
61	61	0.211
62	62	0.387
63	63	0.981
64	64	0.811
65	65	0.065
66	66	2.29854e-6
67	67	0.763
68	68	0.696
69	69	0.425
7	7	0.288
70	70	0.0591
71	71	0.376
72	72	0.484
73	73	0.399
74	74	0.557
75	75	0.16
76	76	0.366
77	77	0.349
78	78	0.485
79	79	0.329
8	8	0.833
80	80	0.0901
81	81	0.454
82	82	0.00758
83	83	0.473
84	84	0.427
85	85	0.0155
86	86	0.857
87	87	0.0743
88	88	0.704
89	89	0.0366
9	9	0.228
90	90	0.0552
91	91	0.0108
92	92	0.0319
93	93	0.896
94	94	0.156
95	95	0.219
96	96	0.143
97	97	0.691
98	98	0.953
99	99	0.931

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12326

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|F5samples=
+|DRA_sample_Accession=CAGE@SAMD00005737
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
+|accession_numbers=CAGE;DRX007883;DRR008755;DRZ000180;DRZ001565;DRZ011530;DRZ012915
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000219,CL:0000235,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000861,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002087,CL:0002150,CL:0002194,CL:0002320,CL:0002371
+|ancestors_in_anatomy_facet=
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0011472
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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P2;;chr6:135502408..135502459,+!p2@MYB!0.23!0.95!MYB;;chr2:46524865..46524870,+!p9@EPAS1!0.23!0.95!EPAS1;;chr12:72056749..72056767,+!p6@THAP2!0.23!0.88!THAP2;;chr16:67596417..67596497,+!p1@CTCF!0.22!51.75!CTCF;;chr15:57210818..57210930,+!p1@TCF12!0.22!26.60!TCF12;;chr19:9695169..9695188,-!p1@ZNF121!0.22!25.73!ZNF121;;chr10:111967345..111967422,+!p1@MXI1!0.22!24.19!MXI1;;chr10:124768300..124768334,-!p1@IKZF5!0.22!17.83!IKZF5;;chr19:53400852..53400962,-!p1@ZNF320!0.22!14.40!ZNF320;;chr17:33288552..33288598,+!p1@ZNF830!0.22!10.82!ZNF830;;chr2:174830084..174830108,-!p4@SP3!0.22!5.12!SP3;;chrX:129244840..129244881,-!p2@ELF4!0.22!5.04!ELF4;;chr20:44600496..44600541,-!p2@ZNF335!0.22!3.14!ZNF335;;chr14:69262789..69262822,-!p2@ZFP36L1!0.22!3.14!ZFP36L1;;chr14:35872962..35873025,-!p3@NFKBIA!0.22!3.00!NFKBIA;;chr6:20403727..20403769,+!p4@E2F3!0.22!2.85!E2F3;;chr11:58346585..58346607,+!p2@ZFP91!0.22!2.78!ZFP91;;chr1:35656397..35656455,-!p3@SFPQ!0.22!2.70!SFPQ;;chr1:235383681..235383700,-!p2@ARID4B!0.22!1.75!ARID4B;;chr15:31619570..31619615,+!p6@KLF13!0.22!1.75!KLF13;;chr16:68119440..68119480,+!p4@NFATC3!0.22!1.68!NFATC3;;chr9:14082760..14082775,-!p6@NFIB!0.22!1.68!NFIB;;chr19:12551785..12551823,-!p1@ZNF443!0.22!1.61!ZNF443;;chr12:6798692..6798723,-!p5@ZNF384!0.22!1.61!ZNF384;;chr1:247095162..247095173,-!p3@AHCTF1!0.22!1.46!AHCTF1;;chr4:57774884..57774924,+!p4@REST!0.22!1.46!REST;;chr12:10865870..10865888,-!p6@CSDA!0.22!1.24!CSDA;;chr15:71184837..71184877,-!p2@THAP10!0.22!1.24!THAP10;;chr3:170075103..170075114,+!p5@SKIL!0.22!1.17!SKIL;;chr14:89029323..89029329,+!p4@ZC3H14!0.22!1.10!ZC3H14;;chr19:10291229..10291247,-!p5@DNMT1!0.22!1.02!DNMT1;;chr3:114343195..114343206,-!p11@ZBTB20!0.22!1.02!ZBTB20;;chr13:37393324..37393335,+!p2@RFXAP!0.22!0.88!RFXAP;;chr11:12696579..12696611,+!p4@TEAD1!0.22!0.66!TEAD1;;chr12:2968536..2968539,-!p3@FOXM1!0.22!0.66!FOXM1;;chr17:46682368..46682373,-!p12@HOXB6!0.22!0.66!HOXB6;;chr5:92918789..92918800,+!p12@NR2F1!0.22!0.66!NR2F1;;chr5:92919312..92919334,+!p13@NR2F1!0.22!0.66!NR2F1;;chr6:10412338..10412345,-!p17@TFAP2A!0.22!0.66!TFAP2A;;chr9:14083091..14083096,-!p12@NFIB!0.22!0.66!NFIB;;chr9:126774058..126774081,+!p3@LHX2!0.22!0.66!LHX2;;chr2:176987415..176987425,+!p4@HOXD9!0.22!0.66!HOXD9;;chr2:42721205..42721307,+!p4@MTA3!0.22!0.66!MTA3;;chr1:180199393..180199426,+!p1@LHX4!0.22!0.66!LHX4;;chr1:23886329..23886336,-!p3@ID3!0.22!0.66!ID3;;chr1:61542891..61542920,+!p12@NFIA!0.22!0.66!NFIA;;chr9:86595503..86595550,-!p2@HNRNPK!0.21!233.52!HNRPK;;chr17:56065540..56065627,-!p1@VEZF1!0.21!45.10!VEZF1;;chr17:45973586..45973618,+!p1@SP2!0.21!22.22!SP2;;chr10:104155455..104155479,+!p1@NFKB2!0.21!20.90!NFKB2;;chr17:47492236..47492251,-!p1@PHB!0.21!20.03!PHB;;chr12:104531945..104531996,-!p1@NFYB!0.21!19.81!NFYB;;chr5:138629389..138629416,+!p4@MATR3!0.21!17.69!MATR3;;chr12:53614115..53614154,-!p1@RARG!0.21!7.16!RARG;;chr16:67063211..67063240,+!p2@CBFB!0.21!6.29!CBFB;;chr7:5085480..5085510,+!p1@RBAK!0.21!5.99!RBAK;;chr15:77713025..77713081,+!p2@HMG20A!0.21!5.70!HMG20A;;chr11:62369352..62369373,-!p5@MTA2!0.21!4.90!MTA2;;chr10:105110890..105110914,-!p2@PCGF6!0.21!4.60!PCGF6;;chr4:47916543..47916580,-!p2@NFXL1!0.21!4.09!NFXL1;;chr4:38665866..38665878,+!p4@KLF3!0.21!3.95!KLF3;;chr17:38256877..38256900,-!p2@NR1D1!0.21!3.95!NR1D1;;chr20:47894936..47895010,-!p2@ZNFX1!0.21!3.95!ZNFX1;;chr16:29817231..29817290,+!p10@MAZ!0.21!3.58!MAZ;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.92!ZNF213;;chr18:47808120..47808171,-!p2@MBD1!0.21!2.92!MBD1;;chr6:106534230..106534254,+!p2@PRDM1!0.21!2.92!PRDM1;;chr16:67596384..67596411,+!p3@CTCF!0.21!2.85!CTCF;;chr17:35767301..35767344,+!p2@TADA2A!0.21!2.78!TADA2A;;chr7:1570388..1570418,+!p2@MAFK!0.21!2.41!MAFK;;chr12:53773927..53773943,+!p3@SP1!0.21!2.19!SP1;;chr14:103059006..103059017,+!p2@RCOR1!0.21!1.46!RCOR1;;chr3:33481687..33481713,-!p4@UBP1!0.21!1.46!UBP1;;chr19:11616645..11616663,-!p1@ZNF653!0.21!1.39!ZNF653;;chr16:54964740..54964789,+!p1@IRX5!0.21!1.32!IRX5;;chr15:77713095..77713113,+!p5@HMG20A!0.21!0.95!HMG20A;;chrX:53254373..53254406,-!p1@KDM5C!0.20!51.97!KDM5C;;chr14:105886150..105886224,+!p1@MTA1!0.20!48.82!MTA1;;chr18:3450161..3450183,+!p1@TGIF1!0.20!48.17!TGIF1;;chr10:135122380..135122458,+!p1@ZNF511!0.20!43.56!ZNF511;;chr6:34204921..34204939,+!p3@HMGA1!0.20!42.61!HMGA1;;chr5:176449684..176449722,+!p1@ZNF346!0.20!26.75!ZNF346;;chr1:155826967..155827018,-!p1@GON4L!0.20!24.63!GON4L;;chr6:34204973..34204990,+!p4@HMGA1!0.20!18.35!HMGA1;;chr2:85198369..85198483,+!p2@KCMF1!0.20!16.30!KCMF1;;chr15:96873892..96873919,+!p4@NR2F2!0.20!13.30!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.20!12.13!NR2F2;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.20!5.04!ZNF747;;chr19:37569314..37569381,+!p1@ZNF420!0.20!4.39!ZNF420;;chr14:74353576..74353589,+!p3@ZNF410!0.20!4.09!ZNF410;;chr17:4890695..4890773,-!p2@CAMTA2!0.20!3.73!CAMTA2;;chr1:161736140..161736151,+!p3@ATF6!0.20!3.73!ATF6;;chr1:249132556..249132573,+!p3@ZNF672!0.20!3.36!ZNF672;;chr19:56092252..56092287,-!p2@ZNF579!0.20!3.22!ZNF579;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 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10816-111B6
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0011472
+|is_a=EFO:0002091;;FF:0011472
+|is_obsolete=
+|library_id=CNhs12326
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10816
 |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12326,LSID913,release011,COMPLETED
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 |rna_box=111
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=61.822
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=HelaS3
@@ Line 69: / Line 90: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.03673709679697e-280!GO:0043226;organelle;6.77332190835732e-236!GO:0043229;intracellular organelle;2.76515301083319e-235!GO:0043227;membrane-bound organelle;1.57371237050464e-234!GO:0043231;intracellular membrane-bound organelle;1.57371237050464e-234!GO:0005737;cytoplasm;1.05477876123855e-175!GO:0044422;organelle part;3.51229481110751e-173!GO:0044446;intracellular organelle part;2.83270648081908e-171!GO:0044444;cytoplasmic part;3.46362060937017e-121!GO:0005634;nucleus;6.52889663397844e-119!GO:0032991;macromolecular complex;4.05348280859167e-117!GO:0044237;cellular metabolic process;1.07326401415615e-114!GO:0044238;primary metabolic process;1.09617527836564e-109!GO:0043170;macromolecule metabolic process;1.29389701525533e-100!GO:0044428;nuclear part;2.17115400936497e-99!GO:0030529;ribonucleoprotein complex;1.34140133968579e-97!GO:0043233;organelle lumen;1.49812288086562e-91!GO:0031974;membrane-enclosed lumen;1.49812288086562e-91!GO:0003723;RNA binding;7.85455163791089e-87!GO:0005739;mitochondrion;9.25273546902974e-81!GO:0005515;protein binding;2.21176715412901e-71!GO:0006396;RNA processing;2.82235833378359e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.17726998951057e-63!GO:0043283;biopolymer metabolic process;1.94496094196544e-63!GO:0031981;nuclear lumen;3.63962270884445e-59!GO:0043234;protein complex;5.30549814336606e-59!GO:0006412;translation;6.61119762177095e-58!GO:0005840;ribosome;2.41956289483239e-57!GO:0010467;gene expression;1.89297194906997e-56!GO:0006259;DNA metabolic process;4.6678709944403e-55!GO:0044429;mitochondrial part;9.84707844336245e-53!GO:0031967;organelle envelope;3.29563782616264e-50!GO:0031975;envelope;5.48157041835536e-50!GO:0003735;structural constituent of ribosome;3.36818234176123e-49!GO:0044249;cellular biosynthetic process;2.81945267204162e-48!GO:0016071;mRNA metabolic process;4.29112632872057e-48!GO:0031090;organelle membrane;6.5752824106857e-48!GO:0019538;protein metabolic process;7.84808967180083e-48!GO:0016043;cellular component organization and biogenesis;2.04414549429432e-47!GO:0043228;non-membrane-bound organelle;2.2846031880268e-46!GO:0043232;intracellular non-membrane-bound organelle;2.2846031880268e-46!GO:0044267;cellular protein metabolic process;5.21962326070154e-44!GO:0009058;biosynthetic process;5.97735451800095e-44!GO:0008380;RNA splicing;1.84166802580037e-43!GO:0044260;cellular macromolecule metabolic process;3.73880464656225e-43!GO:0006397;mRNA processing;5.13400736788071e-43!GO:0033279;ribosomal subunit;6.28931079759995e-41!GO:0006996;organelle organization and biogenesis;2.29383755825539e-40!GO:0007049;cell cycle;6.01658894039008e-40!GO:0009059;macromolecule biosynthetic process;1.78988542857258e-39!GO:0003676;nucleic acid binding;3.41268317122418e-39!GO:0033036;macromolecule localization;5.05428736241939e-38!GO:0015031;protein transport;1.59818186845983e-37!GO:0005654;nucleoplasm;4.43384887191386e-37!GO:0005829;cytosol;5.17663861700685e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.65962177439049e-35!GO:0065003;macromolecular complex assembly;3.72854286405541e-35!GO:0005740;mitochondrial envelope;1.13494719717536e-33!GO:0019866;organelle inner membrane;1.70690839181018e-33!GO:0008104;protein localization;1.79906205338514e-33!GO:0045184;establishment of protein localization;2.52365061876987e-33!GO:0000166;nucleotide binding;4.55187910820714e-33!GO:0006974;response to DNA damage stimulus;6.29321975352127e-33!GO:0031966;mitochondrial membrane;4.79176653365066e-32!GO:0046907;intracellular transport;2.40937920088801e-31!GO:0022607;cellular component assembly;6.17154317490089e-31!GO:0005743;mitochondrial inner membrane;6.57608543545164e-31!GO:0005681;spliceosome;7.17559394582588e-31!GO:0005694;chromosome;7.17559394582588e-31!GO:0022402;cell cycle process;1.51624946334373e-29!GO:0044451;nucleoplasm part;2.91871301555797e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.02894417349961e-29!GO:0006281;DNA repair;1.53424259591746e-28!GO:0000278;mitotic cell cycle;3.00457164261049e-28!GO:0016070;RNA metabolic process;1.14153273152822e-27!GO:0044427;chromosomal part;2.6667020036891e-27!GO:0006886;intracellular protein transport;1.74583789549241e-25!GO:0016462;pyrophosphatase activity;3.64540855212392e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.9868291930593e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;6.39497333549613e-25!GO:0006260;DNA replication;7.59454615424504e-25!GO:0017111;nucleoside-triphosphatase activity;1.83571079801793e-24!GO:0009719;response to endogenous stimulus;2.20390437969428e-24!GO:0016874;ligase activity;2.76097494586727e-24!GO:0005730;nucleolus;3.41297689410788e-24!GO:0031980;mitochondrial lumen;5.18396230186773e-24!GO:0005759;mitochondrial matrix;5.18396230186773e-24!GO:0044445;cytosolic part;6.19897705168498e-24!GO:0022403;cell cycle phase;1.5394784430007e-23!GO:0006119;oxidative phosphorylation;1.5394784430007e-23!GO:0051276;chromosome organization and biogenesis;3.11498887107436e-23!GO:0044455;mitochondrial membrane part;1.48196350479718e-22!GO:0006457;protein folding;1.85380163801571e-22!GO:0032553;ribonucleotide binding;3.0427743612443e-22!GO:0032555;purine ribonucleotide binding;3.0427743612443e-22!GO:0017076;purine nucleotide binding;4.51256545726765e-22!GO:0005524;ATP binding;9.05440792042226e-22!GO:0015934;large ribosomal subunit;1.35701879874921e-21!GO:0032559;adenyl ribonucleotide binding;1.37080284089717e-21!GO:0030554;adenyl nucleotide binding;4.18254573979501e-21!GO:0000087;M phase of mitotic cell cycle;5.46030287442908e-21!GO:0007067;mitosis;1.46279166901826e-20!GO:0015935;small ribosomal subunit;1.84873515117396e-20!GO:0006512;ubiquitin cycle;1.03416162389699e-19!GO:0051649;establishment of cellular localization;2.98324763444092e-19!GO:0022618;protein-RNA complex assembly;3.16232024142537e-19!GO:0051641;cellular localization;6.4387812814636e-19!GO:0000279;M phase;7.35918438851792e-19!GO:0051301;cell division;8.42320061341159e-19!GO:0044265;cellular macromolecule catabolic process;2.2490240858858e-18!GO:0051186;cofactor metabolic process;4.35857734418319e-18!GO:0012505;endomembrane system;4.9314701332056e-18!GO:0005746;mitochondrial respiratory chain;5.69336028557098e-18!GO:0008134;transcription factor binding;7.95981117140721e-18!GO:0016887;ATPase activity;9.93495317834739e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11979105926837e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.67490705545002e-17!GO:0042254;ribosome biogenesis and assembly;1.72839678487799e-17!GO:0019941;modification-dependent protein catabolic process;2.93470868102574e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.93470868102574e-17!GO:0044453;nuclear membrane part;3.02600349704611e-17!GO:0008135;translation factor activity, nucleic acid binding;3.09492296571788e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.24334116694818e-17!GO:0006323;DNA packaging;5.05081622961139e-17!GO:0044257;cellular protein catabolic process;5.61212397412099e-17!GO:0005635;nuclear envelope;6.58796958067486e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17837806629387e-16!GO:0031965;nuclear membrane;1.33560604633503e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.65755814889409e-16!GO:0042623;ATPase activity, coupled;1.89912244969667e-16!GO:0005761;mitochondrial ribosome;4.16054416164581e-16!GO:0000313;organellar ribosome;4.16054416164581e-16!GO:0005783;endoplasmic reticulum;4.62264859086209e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.33987729675081e-16!GO:0003954;NADH dehydrogenase activity;7.33987729675081e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.33987729675081e-16!GO:0044248;cellular catabolic process;1.63485947795439e-15!GO:0043285;biopolymer catabolic process;1.89452972140756e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.0135525808732e-15!GO:0000375;RNA splicing, via transesterification reactions;2.0135525808732e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.0135525808732e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.34222555766198e-15!GO:0051082;unfolded protein binding;2.58601694888884e-15!GO:0006399;tRNA metabolic process;3.6152909355517e-15!GO:0044432;endoplasmic reticulum part;3.62272141737212e-15!GO:0006732;coenzyme metabolic process;3.64589769329202e-15!GO:0006605;protein targeting;4.98706872189895e-15!GO:0005643;nuclear pore;7.92183001661764e-15!GO:0009057;macromolecule catabolic process;9.71896406309376e-15!GO:0006366;transcription from RNA polymerase II promoter;1.09955092969349e-14!GO:0000785;chromatin;2.29071235755931e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.37938505425195e-14!GO:0042773;ATP synthesis coupled electron transport;2.37938505425195e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5061159759048e-14!GO:0051726;regulation of cell cycle;4.63964044852894e-14!GO:0004386;helicase activity;4.76046521803946e-14!GO:0050657;nucleic acid transport;5.29372579199036e-14!GO:0051236;establishment of RNA localization;5.29372579199036e-14!GO:0050658;RNA transport;5.29372579199036e-14!GO:0006403;RNA localization;6.53917191747325e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.37938269379879e-14!GO:0045271;respiratory chain complex I;8.37938269379879e-14!GO:0005747;mitochondrial respiratory chain complex I;8.37938269379879e-14!GO:0000074;regulation of progression through cell cycle;9.46322940700999e-14!GO:0016604;nuclear body;1.606385092613e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.00062808131345e-13!GO:0003743;translation initiation factor activity;2.52940086467556e-13!GO:0043412;biopolymer modification;2.52940086467556e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.97318568561246e-13!GO:0006333;chromatin assembly or disassembly;4.63613706591572e-13!GO:0048770;pigment granule;6.46086876155877e-13!GO:0042470;melanosome;6.46086876155877e-13!GO:0065004;protein-DNA complex assembly;6.92024589415098e-13!GO:0030163;protein catabolic process;8.28268753407526e-13!GO:0046930;pore complex;8.72952248470932e-13!GO:0006261;DNA-dependent DNA replication;1.47352703978231e-12!GO:0006913;nucleocytoplasmic transport;1.51415833418321e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.91276211170957e-12!GO:0051169;nuclear transport;3.97491693134091e-12!GO:0006364;rRNA processing;4.15861017654714e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.21639397683461e-12!GO:0051028;mRNA transport;5.49324298061636e-12!GO:0065002;intracellular protein transport across a membrane;8.52159901794614e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.79725265319543e-12!GO:0012501;programmed cell death;9.21783526475101e-12!GO:0006413;translational initiation;9.29516979197119e-12!GO:0005789;endoplasmic reticulum membrane;9.7507675637822e-12!GO:0003712;transcription cofactor activity;1.29474375812105e-11!GO:0016072;rRNA metabolic process;1.33777088672634e-11!GO:0006915;apoptosis;2.0438467969402e-11!GO:0016568;chromatin modification;3.27810831745669e-11!GO:0043566;structure-specific DNA binding;4.19603531160336e-11!GO:0008026;ATP-dependent helicase activity;4.39144637421242e-11!GO:0009055;electron carrier activity;4.57682459397253e-11!GO:0048193;Golgi vesicle transport;5.16829542127856e-11!GO:0000775;chromosome, pericentric region;7.47286269207794e-11!GO:0016607;nuclear speck;8.99156096712616e-11!GO:0006464;protein modification process;9.3766692327623e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.77764658801361e-11!GO:0004812;aminoacyl-tRNA ligase activity;9.77764658801361e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.77764658801361e-11!GO:0006446;regulation of translational initiation;1.13144663614614e-10!GO:0009259;ribonucleotide metabolic process;1.50723461512452e-10!GO:0051188;cofactor biosynthetic process;1.788364432283e-10!GO:0043038;amino acid activation;1.95899741244572e-10!GO:0006418;tRNA aminoacylation for protein translation;1.95899741244572e-10!GO:0043039;tRNA aminoacylation;1.95899741244572e-10!GO:0006163;purine nucleotide metabolic process;2.00115293249583e-10!GO:0008219;cell death;2.67459267351246e-10!GO:0016265;death;2.67459267351246e-10!GO:0003697;single-stranded DNA binding;3.45073879075406e-10!GO:0008639;small protein conjugating enzyme activity;3.68805942334378e-10!GO:0043687;post-translational protein modification;6.96671226010675e-10!GO:0004842;ubiquitin-protein ligase activity;1.07371203135138e-09!GO:0019787;small conjugating protein ligase activity;1.40051487726304e-09!GO:0006164;purine nucleotide biosynthetic process;1.66928959032907e-09!GO:0051329;interphase of mitotic cell cycle;1.8309123477017e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.18680123494098e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.2232918452967e-09!GO:0009150;purine ribonucleotide metabolic process;2.98755886851e-09!GO:0009260;ribonucleotide biosynthetic process;3.33244430162655e-09!GO:0051325;interphase;3.38378109758456e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.49137077654826e-09!GO:0015630;microtubule cytoskeleton;4.07533191598766e-09!GO:0005657;replication fork;4.14402826147965e-09!GO:0017038;protein import;4.25803486475109e-09!GO:0016779;nucleotidyltransferase activity;5.09639467568563e-09!GO:0005819;spindle;5.66680160748999e-09!GO:0009108;coenzyme biosynthetic process;6.68894605450487e-09!GO:0016787;hydrolase activity;7.74956859924931e-09!GO:0006461;protein complex assembly;1.01058302353872e-08!GO:0008565;protein transporter activity;1.01642026504946e-08!GO:0007005;mitochondrion organization and biogenesis;1.06683527118495e-08!GO:0016881;acid-amino acid ligase activity;1.11903518225746e-08!GO:0009060;aerobic respiration;1.25264990061759e-08!GO:0005667;transcription factor complex;1.4598072589488e-08!GO:0015986;ATP synthesis coupled proton transport;1.5153095096735e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.5153095096735e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.63969953330939e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.16665463411197e-08!GO:0016192;vesicle-mediated transport;2.18759895773465e-08!GO:0006334;nucleosome assembly;2.31415646791368e-08!GO:0009141;nucleoside triphosphate metabolic process;2.38891600538687e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.39999444703237e-08!GO:0045333;cellular respiration;2.44230834644592e-08!GO:0031497;chromatin assembly;3.53965713024213e-08!GO:0009056;catabolic process;4.19254701041542e-08!GO:0007051;spindle organization and biogenesis;4.54900999034346e-08!GO:0046034;ATP metabolic process;5.2479299352188e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.3118463357726e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.3118463357726e-08!GO:0005794;Golgi apparatus;5.65228501354435e-08!GO:0006752;group transfer coenzyme metabolic process;6.36367022509008e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.59427439860295e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.59427439860295e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.0800182886874e-07!GO:0006754;ATP biosynthetic process;1.36761380270328e-07!GO:0006753;nucleoside phosphate metabolic process;1.36761380270328e-07!GO:0050794;regulation of cellular process;1.39221044011773e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.40463078390832e-07!GO:0005793;ER-Golgi intermediate compartment;1.42671739727569e-07!GO:0005813;centrosome;1.43791373200355e-07!GO:0000075;cell cycle checkpoint;1.45856423124651e-07!GO:0019829;cation-transporting ATPase activity;1.58125149130667e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.89364056911777e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.89364056911777e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.98622325577837e-07!GO:0008094;DNA-dependent ATPase activity;2.08834911742268e-07!GO:0000245;spliceosome assembly;2.08834911742268e-07!GO:0006302;double-strand break repair;2.26725192195573e-07!GO:0032446;protein modification by small protein conjugation;2.369345777284e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.57540594438304e-07!GO:0009117;nucleotide metabolic process;2.7777643012893e-07!GO:0016740;transferase activity;2.81465087003842e-07!GO:0016567;protein ubiquitination;3.18162444246281e-07!GO:0005815;microtubule organizing center;3.86359774142788e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.46179565392958e-07!GO:0043623;cellular protein complex assembly;5.82024921439126e-07!GO:0003682;chromatin binding;6.16431710683615e-07!GO:0006099;tricarboxylic acid cycle;6.35006787909017e-07!GO:0046356;acetyl-CoA catabolic process;6.35006787909017e-07!GO:0016564;transcription repressor activity;6.76845045990126e-07!GO:0019222;regulation of metabolic process;7.18193007391703e-07!GO:0045259;proton-transporting ATP synthase complex;8.62124485249011e-07!GO:0003899;DNA-directed RNA polymerase activity;9.16551555536436e-07!GO:0003713;transcription coactivator activity;9.25146046997531e-07!GO:0006084;acetyl-CoA metabolic process;1.01692736546346e-06!GO:0042981;regulation of apoptosis;1.21734751019777e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.22931494928156e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.3106383082369e-06!GO:0031324;negative regulation of cellular metabolic process;1.3228119111519e-06!GO:0008168;methyltransferase activity;1.43608640698521e-06!GO:0043067;regulation of programmed cell death;1.44629284003562e-06!GO:0051170;nuclear import;1.83779989744279e-06!GO:0051427;hormone receptor binding;2.51694289679855e-06!GO:0000151;ubiquitin ligase complex;2.81787979453923e-06!GO:0003690;double-stranded DNA binding;2.89434019297512e-06!GO:0005768;endosome;3.24595224424995e-06!GO:0051168;nuclear export;3.36319643772976e-06!GO:0003724;RNA helicase activity;3.4078469738028e-06!GO:0008033;tRNA processing;3.44468265632751e-06!GO:0007059;chromosome segregation;4.24760357656472e-06!GO:0051052;regulation of DNA metabolic process;5.05679182520806e-06!GO:0006414;translational elongation;5.55238515257094e-06!GO:0035257;nuclear hormone receptor binding;5.84111373157659e-06!GO:0051246;regulation of protein metabolic process;6.35456237383889e-06!GO:0006606;protein import into nucleus;6.46392048491384e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;6.48324983058871e-06!GO:0004298;threonine endopeptidase activity;6.55868900117948e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.73374160831013e-06!GO:0009109;coenzyme catabolic process;7.00094519939664e-06!GO:0048523;negative regulation of cellular process;7.43542752479434e-06!GO:0016491;oxidoreductase activity;7.64818442451118e-06!GO:0006888;ER to Golgi vesicle-mediated transport;8.92832710206483e-06!GO:0016853;isomerase activity;9.0152125991257e-06!GO:0051187;cofactor catabolic process;1.27000700088716e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.36600695677663e-05!GO:0006613;cotranslational protein targeting to membrane;1.40890356747918e-05!GO:0009892;negative regulation of metabolic process;1.41214583405555e-05!GO:0006793;phosphorus metabolic process;1.59739266659201e-05!GO:0006796;phosphate metabolic process;1.59739266659201e-05!GO:0043069;negative regulation of programmed cell death;1.61921769214389e-05!GO:0030120;vesicle coat;1.62478067244707e-05!GO:0030662;coated vesicle membrane;1.62478067244707e-05!GO:0005762;mitochondrial large ribosomal subunit;1.78608652869351e-05!GO:0000315;organellar large ribosomal subunit;1.78608652869351e-05!GO:0048475;coated membrane;1.79142614143432e-05!GO:0030117;membrane coat;1.79142614143432e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.888993715053e-05!GO:0000776;kinetochore;2.01321905036892e-05!GO:0006916;anti-apoptosis;2.01321905036892e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25428710522901e-05!GO:0016363;nuclear matrix;2.30490004096724e-05!GO:0008654;phospholipid biosynthetic process;2.36893532668375e-05!GO:0045786;negative regulation of progression through cell cycle;2.36893532668375e-05!GO:0043066;negative regulation of apoptosis;2.37964939381969e-05!GO:0046483;heterocycle metabolic process;2.42392549625444e-05!GO:0006352;transcription initiation;2.48982543428268e-05!GO:0006091;generation of precursor metabolites and energy;2.57621523437183e-05!GO:0016859;cis-trans isomerase activity;2.8355106514165e-05!GO:0016563;transcription activator activity;3.0668388143458e-05!GO:0006310;DNA recombination;3.28277506581253e-05!GO:0000314;organellar small ribosomal subunit;3.2971561822084e-05!GO:0005763;mitochondrial small ribosomal subunit;3.2971561822084e-05!GO:0003684;damaged DNA binding;3.87843195904709e-05!GO:0006270;DNA replication initiation;4.00268450402993e-05!GO:0044452;nucleolar part;4.36285590544344e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.36455989087555e-05!GO:0004527;exonuclease activity;4.5117835045422e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.14208109553656e-05!GO:0019752;carboxylic acid metabolic process;5.80194327681166e-05!GO:0003714;transcription corepressor activity;5.95532908978832e-05!GO:0031323;regulation of cellular metabolic process;5.9854213808879e-05!GO:0006082;organic acid metabolic process;7.23905493139821e-05!GO:0000786;nucleosome;8.34090016662433e-05!GO:0000059;protein import into nucleus, docking;8.57362219331659e-05!GO:0007052;mitotic spindle organization and biogenesis;0.000102486673426357!GO:0008186;RNA-dependent ATPase activity;0.000102660099177475!GO:0005788;endoplasmic reticulum lumen;0.000103426400438812!GO:0006402;mRNA catabolic process;0.000107832502262422!GO:0004518;nuclease activity;0.000112419322770887!GO:0016310;phosphorylation;0.000115055859576054!GO:0003729;mRNA binding;0.000121381568248391!GO:0005770;late endosome;0.000124504416748668!GO:0043021;ribonucleoprotein binding;0.000133414808056028!GO:0003924;GTPase activity;0.00013848122597067!GO:0048519;negative regulation of biological process;0.000139901102353644!GO:0043596;nuclear replication fork;0.000141071167853031!GO:0007088;regulation of mitosis;0.000147776633115705!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000147776633115705!GO:0015399;primary active transmembrane transporter activity;0.000147776633115705!GO:0009165;nucleotide biosynthetic process;0.000157593387129352!GO:0032508;DNA duplex unwinding;0.000159020670290566!GO:0032392;DNA geometric change;0.000159020670290566!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000161920614680818!GO:0045454;cell redox homeostasis;0.000178854294239578!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000179638210866829!GO:0006839;mitochondrial transport;0.000184370722670568!GO:0000049;tRNA binding;0.000193029075264218!GO:0003678;DNA helicase activity;0.00019799626761855!GO:0016481;negative regulation of transcription;0.000209846440352477!GO:0048471;perinuclear region of cytoplasm;0.000216341436246039!GO:0006284;base-excision repair;0.000221999526323814!GO:0050789;regulation of biological process;0.000233458384032997!GO:0031072;heat shock protein binding;0.000255326448429291!GO:0006612;protein targeting to membrane;0.000258145690186063!GO:0043681;protein import into mitochondrion;0.000269510166469555!GO:0015980;energy derivation by oxidation of organic compounds;0.000270759132492874!GO:0044440;endosomal part;0.000287225063179002!GO:0010008;endosome membrane;0.000287225063179002!GO:0006350;transcription;0.000287810401940985!GO:0004004;ATP-dependent RNA helicase activity;0.000297289592191144!GO:0051252;regulation of RNA metabolic process;0.000301656124927127!GO:0005798;Golgi-associated vesicle;0.000340302895821572!GO:0006268;DNA unwinding during replication;0.000352808608615611!GO:0009112;nucleobase metabolic process;0.000352808608615611!GO:0003702;RNA polymerase II transcription factor activity;0.000362730233041196!GO:0006950;response to stress;0.000372979608895923!GO:0006626;protein targeting to mitochondrion;0.000423076664334719!GO:0006275;regulation of DNA replication;0.000423076664334719!GO:0000228;nuclear chromosome;0.00043948683222735!GO:0051789;response to protein stimulus;0.000493832584575133!GO:0006986;response to unfolded protein;0.000493832584575133!GO:0005791;rough endoplasmic reticulum;0.000497027726511576!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000497565193432108!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000509097036986096!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000509623241436135!GO:0006401;RNA catabolic process;0.000524279974541838!GO:0043601;nuclear replisome;0.000524279974541838!GO:0030894;replisome;0.000524279974541838!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000529215472135563!GO:0042802;identical protein binding;0.000529483968041339!GO:0051920;peroxiredoxin activity;0.000535233667871102!GO:0005684;U2-dependent spliceosome;0.000536524109362304!GO:0030880;RNA polymerase complex;0.000567753620953921!GO:0046474;glycerophospholipid biosynthetic process;0.000569718709120894!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000599246429269602!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000622763669167517!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000633252321591768!GO:0030867;rough endoplasmic reticulum membrane;0.000651901315634533!GO:0003711;transcription elongation regulator activity;0.000663546611478888!GO:0006405;RNA export from nucleus;0.000681748461284732!GO:0050662;coenzyme binding;0.00068326462608212!GO:0019867;outer membrane;0.000732180557852879!GO:0016251;general RNA polymerase II transcription factor activity;0.000747204482126433!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000839571023300397!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000839571023300397!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000839571023300397!GO:0031968;organelle outer membrane;0.000854725427800879!GO:0000082;G1/S transition of mitotic cell cycle;0.000915869825027882!GO:0005048;signal sequence binding;0.000922621788995471!GO:0015631;tubulin binding;0.000924368481185902!GO:0046489;phosphoinositide biosynthetic process;0.00096778829228153!GO:0000922;spindle pole;0.000986526501761017!GO:0015992;proton transport;0.00100389884067016!GO:0003746;translation elongation factor activity;0.0010522092931149!GO:0000096;sulfur amino acid metabolic process;0.00111391055967004!GO:0006818;hydrogen transport;0.0011730634073818!GO:0019899;enzyme binding;0.00118369246798817!GO:0048522;positive regulation of cellular process;0.00120175802463798!GO:0043492;ATPase activity, coupled to movement of substances;0.00124111968593135!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00126545658558381!GO:0000428;DNA-directed RNA polymerase complex;0.00126545658558381!GO:0005637;nuclear inner membrane;0.00127384828818214!GO:0007093;mitotic cell cycle checkpoint;0.00127936742663092!GO:0005876;spindle microtubule;0.00135861137578835!GO:0035258;steroid hormone receptor binding;0.00136716778273917!GO:0006383;transcription from RNA polymerase III promoter;0.00137668963132408!GO:0033116;ER-Golgi intermediate compartment membrane;0.0014179276193622!GO:0065009;regulation of a molecular function;0.00142753734591803!GO:0006520;amino acid metabolic process;0.00142845695914141!GO:0030521;androgen receptor signaling pathway;0.00147803915191569!GO:0000725;recombinational repair;0.00147905069909927!GO:0000724;double-strand break repair via homologous recombination;0.00147905069909927!GO:0043414;biopolymer methylation;0.00148108674221619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00150014496531653!GO:0042770;DNA damage response, signal transduction;0.00151500132821809!GO:0048487;beta-tubulin binding;0.00152153787451141!GO:0043284;biopolymer biosynthetic process;0.00152311159389429!GO:0048037;cofactor binding;0.00152311159389429!GO:0010468;regulation of gene expression;0.00163405020090744!GO:0032259;methylation;0.00165775395014298!GO:0006289;nucleotide-excision repair;0.00170339535341079!GO:0008022;protein C-terminus binding;0.00172163134535329!GO:0000819;sister chromatid segregation;0.00176011116271282!GO:0008312;7S RNA binding;0.00178067104323253!GO:0019843;rRNA binding;0.00178067104323253!GO:0042393;histone binding;0.00179219260504077!GO:0004674;protein serine/threonine kinase activity;0.00183456020266158!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00184516741493431!GO:0007050;cell cycle arrest;0.00194376376597016!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00196729406326219!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00196729406326219!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00196729406326219!GO:0048500;signal recognition particle;0.00198049399225062!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0020440998743115!GO:0005874;microtubule;0.00206847633407334!GO:0000070;mitotic sister chromatid segregation;0.00209552449135943!GO:0031124;mRNA 3'-end processing;0.00224364733725647!GO:0031252;leading edge;0.00225568446230152!GO:0022890;inorganic cation transmembrane transporter activity;0.00226534301127273!GO:0008276;protein methyltransferase activity;0.00226534301127273!GO:0006611;protein export from nucleus;0.00230968780016415!GO:0043488;regulation of mRNA stability;0.00240130039760324!GO:0043487;regulation of RNA stability;0.00240130039760324!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0024506764512757!GO:0006144;purine base metabolic process;0.00254076070122705!GO:0005885;Arp2/3 protein complex;0.00254391070028763!GO:0007017;microtubule-based process;0.002547144390964!GO:0051087;chaperone binding;0.00259481077594225!GO:0005741;mitochondrial outer membrane;0.00261796283468449!GO:0009116;nucleoside metabolic process;0.00269761613878722!GO:0006595;polyamine metabolic process;0.00282482768395341!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00285713885921431!GO:0032200;telomere organization and biogenesis;0.00292543454162574!GO:0000723;telomere maintenance;0.00292543454162574!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00296095814824875!GO:0008408;3'-5' exonuclease activity;0.00298376841356883!GO:0008250;oligosaccharyl transferase complex;0.00307816451524899!GO:0007006;mitochondrial membrane organization and biogenesis;0.00322834520901336!GO:0005525;GTP binding;0.00332388328051409!GO:0006338;chromatin remodeling;0.00376986265466151!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00377575418861042!GO:0046983;protein dimerization activity;0.0038402439576927!GO:0031570;DNA integrity checkpoint;0.00395056546864108!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00422146399343724!GO:0016272;prefoldin complex;0.00427122190090876!GO:0007010;cytoskeleton organization and biogenesis;0.00427504681219417!GO:0008139;nuclear localization sequence binding;0.00427504681219417!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00430095890267246!GO:0009451;RNA modification;0.00432365116384229!GO:0051287;NAD binding;0.00437250421351587!GO:0051540;metal cluster binding;0.00437250421351587!GO:0051536;iron-sulfur cluster binding;0.00437250421351587!GO:0005769;early endosome;0.00445129972270051!GO:0005773;vacuole;0.00455971991962!GO:0004576;oligosaccharyl transferase activity;0.00459425247193358!GO:0030176;integral to endoplasmic reticulum membrane;0.00466245363415662!GO:0000086;G2/M transition of mitotic cell cycle;0.00476674395110702!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00491658580900444!GO:0045047;protein targeting to ER;0.00491658580900444!GO:0051053;negative regulation of DNA metabolic process;0.00496321556742822!GO:0005669;transcription factor TFIID complex;0.00497260334540218!GO:0045892;negative regulation of transcription, DNA-dependent;0.00564778572805144!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00570748934615189!GO:0005663;DNA replication factor C complex;0.00580855893219204!GO:0032774;RNA biosynthetic process;0.00585508021728831!GO:0006506;GPI anchor biosynthetic process;0.00602265385613143!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00608999512850231!GO:0003677;DNA binding;0.00621835258279342!GO:0031123;RNA 3'-end processing;0.00622683504045154!GO:0044431;Golgi apparatus part;0.00641274677822168!GO:0000792;heterochromatin;0.00646779060058232!GO:0044454;nuclear chromosome part;0.00651587450406888!GO:0046966;thyroid hormone receptor binding;0.00674622237817371!GO:0008361;regulation of cell size;0.00679089797743604!GO:0006351;transcription, DNA-dependent;0.0072437482262792!GO:0040029;regulation of gene expression, epigenetic;0.0072437482262792!GO:0000178;exosome (RNase complex);0.00739154004624095!GO:0000287;magnesium ion binding;0.00753809128944718!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00809737544127258!GO:0000339;RNA cap binding;0.00815615201413518!GO:0006378;mRNA polyadenylation;0.00854654587184725!GO:0043022;ribosome binding;0.00872720984411268!GO:0006376;mRNA splice site selection;0.00885854449171068!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00885854449171068!GO:0031988;membrane-bound vesicle;0.00913258355955986!GO:0006505;GPI anchor metabolic process;0.00915325643551031!GO:0019783;small conjugating protein-specific protease activity;0.00918105160167699!GO:0008234;cysteine-type peptidase activity;0.00930781879527782!GO:0008632;apoptotic program;0.00936531778118689!GO:0030132;clathrin coat of coated pit;0.00938187324990567!GO:0005832;chaperonin-containing T-complex;0.00943112432083765!GO:0007004;telomere maintenance via telomerase;0.0094647811722322!GO:0000781;chromosome, telomeric region;0.00947967490375503!GO:0006400;tRNA modification;0.00947967490375503!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00947967490375503!GO:0006650;glycerophospholipid metabolic process;0.00952251442166447!GO:0030658;transport vesicle membrane;0.00956947753121743!GO:0006417;regulation of translation;0.00964558998047251!GO:0043065;positive regulation of apoptosis;0.00971120647502723!GO:0003887;DNA-directed DNA polymerase activity;0.00977927223214988!GO:0006519;amino acid and derivative metabolic process;0.00980161633210046!GO:0008017;microtubule binding;0.00981139143444453!GO:0046467;membrane lipid biosynthetic process;0.00991658694497406!GO:0016049;cell growth;0.0101760475650191!GO:0003725;double-stranded RNA binding;0.0101760475650191!GO:0030384;phosphoinositide metabolic process;0.0103094506119611!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0104493282186533!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0105896558235007!GO:0006891;intra-Golgi vesicle-mediated transport;0.0105896558235007!GO:0050681;androgen receptor binding;0.0106756780285286!GO:0004523;ribonuclease H activity;0.0107097458794055!GO:0043624;cellular protein complex disassembly;0.0107963552958688!GO:0006118;electron transport;0.0109845730891585!GO:0030663;COPI coated vesicle membrane;0.0110432294622242!GO:0030126;COPI vesicle coat;0.0110432294622242!GO:0008180;signalosome;0.0113065687212255!GO:0016126;sterol biosynthetic process;0.0113065687212255!GO:0016790;thiolester hydrolase activity;0.0113292313561055!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0114556126375477!GO:0015002;heme-copper terminal oxidase activity;0.0114556126375477!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0114556126375477!GO:0004129;cytochrome-c oxidase activity;0.0114556126375477!GO:0000323;lytic vacuole;0.0114702475209773!GO:0005764;lysosome;0.0114702475209773!GO:0006497;protein amino acid lipidation;0.0115565249885268!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0116178209285385!GO:0016197;endosome transport;0.0119573191343703!GO:0004843;ubiquitin-specific protease activity;0.0120724840630673!GO:0004003;ATP-dependent DNA helicase activity;0.0125257153350555!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0125257153350555!GO:0045893;positive regulation of transcription, DNA-dependent;0.0125257153350555!GO:0009124;nucleoside monophosphate biosynthetic process;0.0126850059641927!GO:0009123;nucleoside monophosphate metabolic process;0.0126850059641927!GO:0043068;positive regulation of programmed cell death;0.0127548001584562!GO:0018196;peptidyl-asparagine modification;0.0130391881769729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0130391881769729!GO:0007034;vacuolar transport;0.0130391881769729!GO:0016023;cytoplasmic membrane-bound vesicle;0.013156206669406!GO:0008170;N-methyltransferase activity;0.0136756888962974!GO:0009889;regulation of biosynthetic process;0.0138715720608934!GO:0001889;liver development;0.0141616772703785!GO:0030518;steroid hormone receptor signaling pathway;0.0141763420800568!GO:0001558;regulation of cell growth;0.0143397864752526!GO:0000910;cytokinesis;0.0144267693667721!GO:0006007;glucose catabolic process;0.0144872921581872!GO:0016788;hydrolase activity, acting on ester bonds;0.0146179563709391!GO:0005869;dynactin complex;0.0146919322953834!GO:0043433;negative regulation of transcription factor activity;0.0152479287328233!GO:0009119;ribonucleoside metabolic process;0.0154281223701237!GO:0006730;one-carbon compound metabolic process;0.015516160018252!GO:0030137;COPI-coated vesicle;0.0157996498575862!GO:0008652;amino acid biosynthetic process;0.0158372596730814!GO:0006695;cholesterol biosynthetic process;0.0158372596730814!GO:0005758;mitochondrial intermembrane space;0.0158882370424776!GO:0000097;sulfur amino acid biosynthetic process;0.0159271273272637!GO:0022411;cellular component disassembly;0.0160540942045862!GO:0005905;coated pit;0.0160742846241013!GO:0030660;Golgi-associated vesicle membrane;0.0161898229206714!GO:0030118;clathrin coat;0.01630563401322!GO:0031326;regulation of cellular biosynthetic process;0.016365517569692!GO:0006213;pyrimidine nucleoside metabolic process;0.0170139297518426!GO:0008156;negative regulation of DNA replication;0.0170781797142953!GO:0005658;alpha DNA polymerase:primase complex;0.0170934901001066!GO:0032561;guanyl ribonucleotide binding;0.0172202540613409!GO:0019001;guanyl nucleotide binding;0.0172202540613409!GO:0000726;non-recombinational repair;0.0173045701440094!GO:0008637;apoptotic mitochondrial changes;0.0174053441249544!GO:0045941;positive regulation of transcription;0.0175748689452746!GO:0008610;lipid biosynthetic process;0.0177158292970656!GO:0004221;ubiquitin thiolesterase activity;0.0177339016118694!GO:0033673;negative regulation of kinase activity;0.0184420461174074!GO:0006469;negative regulation of protein kinase activity;0.0184420461174074!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0186074639549629!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0186590912370054!GO:0000077;DNA damage checkpoint;0.0189740937000363!GO:0051059;NF-kappaB binding;0.0189740937000363!GO:0006767;water-soluble vitamin metabolic process;0.0190322751688674!GO:0042054;histone methyltransferase activity;0.0192091088126628!GO:0017166;vinculin binding;0.01942132393698!GO:0051539;4 iron, 4 sulfur cluster binding;0.0195989688469255!GO:0046982;protein heterodimerization activity;0.0199955903849895!GO:0032984;macromolecular complex disassembly;0.0201301640948012!GO:0007346;regulation of progression through mitotic cell cycle;0.0201673844250452!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0203289701516729!GO:0033170;DNA-protein loading ATPase activity;0.0203537826199377!GO:0003689;DNA clamp loader activity;0.0203537826199377!GO:0006596;polyamine biosynthetic process;0.0206469964605756!GO:0006541;glutamine metabolic process;0.0206541307831523!GO:0046112;nucleobase biosynthetic process;0.0208995934677439!GO:0031982;vesicle;0.0209255983892293!GO:0006360;transcription from RNA polymerase I promoter;0.0211448900306548!GO:0045936;negative regulation of phosphate metabolic process;0.021496686081349!GO:0030134;ER to Golgi transport vesicle;0.0217612799375244!GO:0035267;NuA4 histone acetyltransferase complex;0.0218256010772403!GO:0004532;exoribonuclease activity;0.0221705110054928!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0221705110054928!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.022387162753363!GO:0050790;regulation of catalytic activity;0.0226344887638788!GO:0008538;proteasome activator activity;0.0226861748177792!GO:0007021;tubulin folding;0.0229568976935631!GO:0051320;S phase;0.0229868540882213!GO:0006354;RNA elongation;0.0233224334731706!GO:0006301;postreplication repair;0.0233449808654678!GO:0016407;acetyltransferase activity;0.024014786993108!GO:0051716;cellular response to stimulus;0.0240621494013437!GO:0006733;oxidoreduction coenzyme metabolic process;0.0242258250954138!GO:0000793;condensed chromosome;0.0242463283059937!GO:0051348;negative regulation of transferase activity;0.0244193700276297!GO:0000080;G1 phase of mitotic cell cycle;0.0244345484403604!GO:0044450;microtubule organizing center part;0.0247106526735918!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0249233797881472!GO:0010257;NADH dehydrogenase complex assembly;0.0249233797881472!GO:0033108;mitochondrial respiratory chain complex assembly;0.0249233797881472!GO:0042158;lipoprotein biosynthetic process;0.0249233797881472!GO:0030433;ER-associated protein catabolic process;0.0249430693716516!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0249430693716516!GO:0043189;H4/H2A histone acetyltransferase complex;0.0249430693716516!GO:0016044;membrane organization and biogenesis;0.0250235833647932!GO:0006406;mRNA export from nucleus;0.0253025757371401!GO:0030503;regulation of cell redox homeostasis;0.0260586258738551!GO:0004536;deoxyribonuclease activity;0.0260586258738551!GO:0030508;thiol-disulfide exchange intermediate activity;0.0261059969571414!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0261786938920786!GO:0043241;protein complex disassembly;0.0264020594878735!GO:0008097;5S rRNA binding;0.026421951782791!GO:0009161;ribonucleoside monophosphate metabolic process;0.0264924007839617!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0264924007839617!GO:0005862;muscle thin filament tropomyosin;0.0265541465377961!GO:0045792;negative regulation of cell size;0.0272112790589762!GO:0045449;regulation of transcription;0.0272284928070211!GO:0047485;protein N-terminus binding;0.0272906653453578!GO:0048518;positive regulation of biological process;0.0272933053074643!GO:0005487;nucleocytoplasmic transporter activity;0.0274748851944465!GO:0051338;regulation of transferase activity;0.0284490245337797!GO:0000084;S phase of mitotic cell cycle;0.029300927662297!GO:0004860;protein kinase inhibitor activity;0.029300927662297!GO:0019206;nucleoside kinase activity;0.0307510652010768!GO:0004659;prenyltransferase activity;0.0308877317718333!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0310891001070549!GO:0031410;cytoplasmic vesicle;0.0313235178307572!GO:0006458;'de novo' protein folding;0.0313451681671741!GO:0051084;'de novo' posttranslational protein folding;0.0313451681671741!GO:0022406;membrane docking;0.0313996939803968!GO:0048278;vesicle docking;0.0313996939803968!GO:0007243;protein kinase cascade;0.031762034301006!GO:0005996;monosaccharide metabolic process;0.0320140281783584!GO:0019318;hexose metabolic process;0.0322658612356089!GO:0016279;protein-lysine N-methyltransferase activity;0.0323907551635364!GO:0018024;histone-lysine N-methyltransferase activity;0.0323907551635364!GO:0016278;lysine N-methyltransferase activity;0.0323907551635364!GO:0043549;regulation of kinase activity;0.0324664106546648!GO:0006740;NADPH regeneration;0.0326498919437077!GO:0006098;pentose-phosphate shunt;0.0326498919437077!GO:0044438;microbody part;0.0326498919437077!GO:0044439;peroxisomal part;0.0326498919437077!GO:0032039;integrator complex;0.0328983728558599!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0335484425900453!GO:0030174;regulation of DNA replication initiation;0.0337893001161085!GO:0031577;spindle checkpoint;0.0338995549667317!GO:0016408;C-acyltransferase activity;0.0340233647311622!GO:0030308;negative regulation of cell growth;0.0340681345428556!GO:0031970;organelle envelope lumen;0.0341619259749121!GO:0007041;lysosomal transport;0.0341628711804583!GO:0017134;fibroblast growth factor binding;0.0346897918402792!GO:0043631;RNA polyadenylation;0.0351148650577043!GO:0006564;L-serine biosynthetic process;0.035455050389955!GO:0000118;histone deacetylase complex;0.0355780079329166!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0356112064145445!GO:0005784;translocon complex;0.0360060441295716!GO:0031902;late endosome membrane;0.0362035396348701!GO:0000152;nuclear ubiquitin ligase complex;0.0362428482183189!GO:0004722;protein serine/threonine phosphatase activity;0.0362428482183189!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0366154177124032!GO:0045039;protein import into mitochondrial inner membrane;0.0366154177124032!GO:0030127;COPII vesicle coat;0.0369734080062699!GO:0012507;ER to Golgi transport vesicle membrane;0.0369734080062699!GO:0009303;rRNA transcription;0.0370404402225056!GO:0031529;ruffle organization and biogenesis;0.0370871288907532!GO:0000139;Golgi membrane;0.037117919252462!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0371294179695158!GO:0030659;cytoplasmic vesicle membrane;0.0381862162749244!GO:0051297;centrosome organization and biogenesis;0.0382905376418755!GO:0031023;microtubule organizing center organization and biogenesis;0.0382905376418755!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0387409777302979!GO:0006509;membrane protein ectodomain proteolysis;0.0388530445726978!GO:0033619;membrane protein proteolysis;0.0388530445726978!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.038974531194978!GO:0003923;GPI-anchor transamidase activity;0.038974531194978!GO:0016255;attachment of GPI anchor to protein;0.038974531194978!GO:0042765;GPI-anchor transamidase complex;0.038974531194978!GO:0008629;induction of apoptosis by intracellular signals;0.0392123544284923!GO:0031625;ubiquitin protein ligase binding;0.039757178710386!GO:0000123;histone acetyltransferase complex;0.039757178710386!GO:0006984;ER-nuclear signaling pathway;0.039757178710386!GO:0032405;MutLalpha complex binding;0.0399351951289095!GO:0040008;regulation of growth;0.0399351951289095!GO:0030119;AP-type membrane coat adaptor complex;0.0402104554095111!GO:0016791;phosphoric monoester hydrolase activity;0.0402163793036017!GO:0000209;protein polyubiquitination;0.0405187430551982!GO:0004520;endodeoxyribonuclease activity;0.0409700303433807!GO:0006739;NADP metabolic process;0.0414075414092653!GO:0046128;purine ribonucleoside metabolic process;0.0417353894762688!GO:0042278;purine nucleoside metabolic process;0.0417353894762688!GO:0006379;mRNA cleavage;0.0421379414072293!GO:0030131;clathrin adaptor complex;0.0422739256309884!GO:0009067;aspartate family amino acid biosynthetic process;0.0425411451887112!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0435514431303533!GO:0006278;RNA-dependent DNA replication;0.0435650498154962!GO:0006904;vesicle docking during exocytosis;0.0436681160667342!GO:0042326;negative regulation of phosphorylation;0.0438425124492702!GO:0006220;pyrimidine nucleotide metabolic process;0.0438693952270041!GO:0051098;regulation of binding;0.0438693952270041!GO:0045502;dynein binding;0.044169220192709!GO:0046519;sphingoid metabolic process;0.044169220192709!GO:0015036;disulfide oxidoreductase activity;0.044169220192709!GO:0000030;mannosyltransferase activity;0.044213355634437!GO:0008426;protein kinase C inhibitor activity;0.0447440147009097!GO:0006778;porphyrin metabolic process;0.0448930346234004!GO:0033013;tetrapyrrole metabolic process;0.0448930346234004!GO:0009113;purine base biosynthetic process;0.0457267723058599!GO:0051318;G1 phase;0.0458857784555101!GO:0006779;porphyrin biosynthetic process;0.0460174831436629!GO:0033014;tetrapyrrole biosynthetic process;0.0460174831436629!GO:0009066;aspartate family amino acid metabolic process;0.0460383836940055!GO:0045859;regulation of protein kinase activity;0.0460383836940055!GO:0044262;cellular carbohydrate metabolic process;0.046095326874228!GO:0043154;negative regulation of caspase activity;0.046838789319009!GO:0000303;response to superoxide;0.046951392079438!GO:0031903;microbody membrane;0.0469676110325722!GO:0005778;peroxisomal membrane;0.0469676110325722!GO:0031371;ubiquitin conjugating enzyme complex;0.0469676110325722!GO:0050811;GABA receptor binding;0.0473687002692143!GO:0004087;carbamoyl-phosphate synthase (ammonia) activity;0.0476658217962262!GO:0032404;mismatch repair complex binding;0.0478352211104473!GO:0008537;proteasome activator complex;0.0481528043884558!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0484120719692638!GO:0001836;release of cytochrome c from mitochondria;0.048659087526453!GO:0000731;DNA synthesis during DNA repair;0.04893380206161!GO:0030125;clathrin vesicle coat;0.0495954514350779!GO:0030665;clathrin coated vesicle membrane;0.0495954514350779
 |sample_id=10816
 |sample_note=
 |sample_sex=female
-|sample_species=
+|sample_species=Human (Homo sapiens)
 |sample_strain=
 |sample_tissue=cervix
 |top_motifs=E2F1..5:2.28160743631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.89816123872;FOXD3:1.81058899393;FOXQ1:1.7559412299;TFDP1:1.64922241947;ELK1,4_GABP{A,B1}:1.63627854827;ESRRA:1.4583594867;NFY{A,B,C}:1.45519499541;YY1:1.44213087534;POU2F1..3:1.35885966782;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.35634579717;ZNF143:1.28808140813;ZNF148:1.26407020795;NRF1:1.25412759024;HOX{A6,A7,B6,B7}:1.209152106;PAX8:1.19101926202;MYB:1.0744796839;PITX1..3:1.04806705548;FOX{I1,J2}:1.00614514713;bHLH_family:0.905565933895;HBP1_HMGB_SSRP1_UBTF:0.881651041904;ARID5B:0.865297843223;VSX1,2:0.822806033733;GFI1:0.797148459652;PPARG:0.792561658368;TOPORS:0.783194942583;PAX1,9:0.777713355476;BREu{core}:0.747572663608;FOXN1:0.665801946383;ZBTB16:0.66017387814;SOX{8,9,10}:0.643863966034;NR5A1,2:0.634967960781;NFIX:0.568436049432;PBX1:0.537568499642;HNF4A_NR2F1,2:0.530650659851;CUX2:0.520052505159;AIRE:0.519792488766;TEF:0.507726664411;ELF1,2,4:0.50548713449;PAX3,7:0.483999603653;RFX2..5_RFXANK_RFXAP:0.460427546932;CEBPA,B_DDIT3:0.457521620554;POU1F1:0.456162972319;NKX2-1,4:0.446718305944;TLX2:0.440370225211;IKZF1:0.429203817813;ZNF384:0.427851830069;NKX3-2:0.410374442399;NR6A1:0.375900815232;CDX1,2,4:0.37322401344;POU3F1..4:0.372808163423;TEAD1:0.322118915754;FOX{F1,F2,J1}:0.304703126847;RORA:0.29721882033;FOXA2:0.294872204488;FOXM1:0.293967724556;NKX3-1:0.279821382368;GTF2A1,2:0.276186304653;ATF5_CREB3:0.256190236392;ATF4:0.250118824097;CREB1:0.246615345785;ZEB1:0.232748688476;BPTF:0.223033524617;NFE2L2:0.209922377725;SNAI1..3:0.181737034033;PAX4:0.179007110439;IRF7:0.167564515679;OCT4_SOX2{dimer}:0.158590500108;HES1:0.154339828158;FOXP1:0.133743594125;NR1H4:0.133640263162;HLF:0.125179233537;STAT5{A,B}:0.106693225081;FOXL1:0.0828621930512;AHR_ARNT_ARNT2:0.0796354693807;AR:0.0688201602156;MYOD1:0.0623203325947;PRRX1,2:0.0616698803593;NFE2:0.0568484159315;HOX{A5,B5}:0.0555606599267;HOXA9_MEIS1:0.0502988260453;NFE2L1:0.0252509404857;EVI1:0.0203018182099;PDX1:-0.0536955282653;HIF1A:-0.0632208840636;PAX2:-0.0660936534776;NKX6-1,2:-0.0697070749073;ZNF423:-0.0818625193825;HNF1A:-0.0823124151554;EN1,2:-0.0857084451917;POU5F1:-0.0890931714343;GZF1:-0.10145698231;FOS_FOS{B,L1}_JUN{B,D}:-0.119353602518;POU6F1:-0.121029928958;JUN:-0.123097145255;ALX1:-0.123426801697;UFEwm:-0.128506260662;GATA6:-0.136540004663;BACH2:-0.13881102344;RBPJ:-0.139087200234;DBP:-0.142913860736;RXRA_VDR{dimer}:-0.145660311032;TBX4,5:-0.167130857001;CDC5L:-0.168448826442;TLX1..3_NFIC{dimer}:-0.168640740641;LHX3,4:-0.168900254;EP300:-0.169634174607;GFI1B:-0.178864160861;LMO2:-0.187199529499;GCM1,2:-0.188447112509;IKZF2:-0.193898193222;ZFP161:-0.208370263907;RFX1:-0.218002172022;FOSL2:-0.222133266227;FOXO1,3,4:-0.229683141111;FOXP3:-0.236682190717;LEF1_TCF7_TCF7L1,2:-0.258323622376;MTF1:-0.266642579503;STAT2,4,6:-0.279584966019;STAT1,3:-0.302258269009;NFKB1_REL_RELA:-0.312159429766;MED-1{core}:-0.319047872153;TBP:-0.320479648544;KLF4:-0.325694060309;ONECUT1,2:-0.329555766478;NANOG:-0.330262924078;MYBL2:-0.337515453147;ZBTB6:-0.343681806299;XCPE1{core}:-0.356723724829;MEF2{A,B,C,D}:-0.358881895082;SREBF1,2:-0.379084749599;TFAP2{A,C}:-0.388097121382;TP53:-0.391577852931;CRX:-0.392110523869;FOX{D1,D2}:-0.399009600484;DMAP1_NCOR{1,2}_SMARC:-0.404651131786;RXR{A,B,G}:-0.408655175858;HOX{A4,D4}:-0.415826771294;SOX5:-0.436376952202;EBF1:-0.454189177066;SPIB:-0.454448891423;TFAP2B:-0.458922150704;HMGA1,2:-0.46975680265;GTF2I:-0.471482316836;HIC1:-0.471537483702;ADNP_IRX_SIX_ZHX:-0.489466901621;ALX4:-0.495531446364;GLI1..3:-0.514779163106;SPI1:-0.516891119492;PAX5:-0.522522552182;TAL1_TCF{3,4,12}:-0.52422771749;ESR1:-0.566128447167;REST:-0.57964548111;SOX2:-0.602844223609;HAND1,2:-0.614965238139;NFIL3:-0.638824547771;PRDM1:-0.657092774919;EGR1..3:-0.659167214718;HSF1,2:-0.68346532696;PATZ1:-0.684615001111;RUNX1..3:-0.687953736614;NR3C1:-0.694528526107;IRF1,2:-0.718451508733;ETS1,2:-0.722807172109;SP1:-0.74007571759;MAZ:-0.743315137436;NHLH1,2:-0.77969576485;GATA4:-0.781600434647;SOX17:-0.828420476435;PAX6:-0.846484553826;RREB1:-0.849034047205;MTE{core}:-0.859291631485;NANOG{mouse}:-0.933681346809;ZIC1..3:-0.94215942108;NKX2-3_NKX2-5:-0.951307672029;ATF2:-0.959866464966;MYFfamily:-1.00439025223;NKX2-2,8:-1.0078227963;SRF:-1.0349868312;TFCP2:-1.0579899385;MAFB:-1.06513870616;MZF1:-1.11116148826;T:-1.12254066754;TGIF1:-1.14767999466;NFATC1..3:-1.17471110946;ZNF238:-1.25158334561;XBP1:-1.36272310687;TFAP4:-1.4358179151;ATF6:-1.45622821923;SMAD1..7,9:-1.76198189913;HMX1:-2.20582487259;SPZ1:-2.329122408
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10816-111B6;search_select_hide=table117:FF:10816-111B6
 }}

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FF:10816-111B6: Difference between revisions

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Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0