FF:10021-101D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005616 | ||
|accession_numbers=CAGE;DRX008710;DRR009582;DRZ001007;DRZ002392;DRZ012357;DRZ013742 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010021 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/placenta%252c%2520adult%252c%2520pool1.CNhs10627.10021-101D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10021-101D3 | |id=FF:10021-101D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010021 | ||
|is_obsolete= | |||
|library_id=CNhs10627 | |||
|library_id_phase_based=2:CNhs10627 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10021 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10021 | |||
|name=placenta, adult, pool1 | |name=placenta, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10627,LSID657,release008,COMPLETED | |profile_hcage=CNhs10627,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -12 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -12 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=mixed | |sample_ethnicity=mixed | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.02140637197583e-260!GO:0005737;cytoplasm;3.92338925807789e-151!GO:0043227;membrane-bound organelle;3.93769415085223e-116!GO:0043231;intracellular membrane-bound organelle;4.00174609169775e-116!GO:0043226;organelle;1.47230483593504e-115!GO:0043229;intracellular organelle;3.44693819218582e-115!GO:0005515;protein binding;4.27487954498482e-104!GO:0044444;cytoplasmic part;1.37684248934009e-102!GO:0044422;organelle part;1.40413060271371e-80!GO:0044446;intracellular organelle part;6.28040529680822e-79!GO:0032991;macromolecular complex;1.61938281588285e-57!GO:0044238;primary metabolic process;1.04497928961799e-50!GO:0044237;cellular metabolic process;3.54264663503073e-48!GO:0043170;macromolecule metabolic process;4.60118598245104e-48!GO:0030529;ribonucleoprotein complex;1.13318694086342e-43!GO:0019538;protein metabolic process;1.22869492241141e-43!GO:0016043;cellular component organization and biogenesis;2.0897389906734e-42!GO:0003723;RNA binding;4.86374428391881e-42!GO:0033036;macromolecule localization;2.9175325949911e-41!GO:0044428;nuclear part;8.00270090680957e-41!GO:0015031;protein transport;1.18882667061938e-40!GO:0031090;organelle membrane;2.01623992852972e-40!GO:0043233;organelle lumen;2.01623992852972e-40!GO:0031974;membrane-enclosed lumen;2.01623992852972e-40!GO:0045184;establishment of protein localization;5.36355882846743e-39!GO:0008104;protein localization;1.82369914080486e-38!GO:0044260;cellular macromolecule metabolic process;2.9974350138445e-37!GO:0044267;cellular protein metabolic process;5.92334825485807e-37!GO:0005634;nucleus;1.57186956558384e-36!GO:0043234;protein complex;1.01937781213267e-30!GO:0005739;mitochondrion;2.04501303493279e-29!GO:0046907;intracellular transport;8.40711377764353e-29!GO:0006412;translation;8.12786092381702e-28!GO:0005829;cytosol;2.38476526061242e-27!GO:0006886;intracellular protein transport;1.04981897596316e-26!GO:0031981;nuclear lumen;1.32146424024564e-25!GO:0016071;mRNA metabolic process;1.79970915696127e-25!GO:0031967;organelle envelope;8.58521756683324e-25!GO:0031975;envelope;1.48920909990074e-24!GO:0065003;macromolecular complex assembly;2.5985138289808e-24!GO:0006396;RNA processing;3.45067247594457e-24!GO:0008380;RNA splicing;4.81901911495246e-24!GO:0005840;ribosome;6.79113888234649e-24!GO:0043283;biopolymer metabolic process;9.11630196012662e-23!GO:0022607;cellular component assembly;1.88487905882666e-22!GO:0009059;macromolecule biosynthetic process;2.02622873046618e-22!GO:0044429;mitochondrial part;5.42612730016874e-22!GO:0006397;mRNA processing;2.75818804611577e-21!GO:0009058;biosynthetic process;3.92367782641018e-21!GO:0005794;Golgi apparatus;7.25121562456853e-21!GO:0051641;cellular localization;1.2222152029017e-20!GO:0051649;establishment of cellular localization;1.2475321751508e-20!GO:0003735;structural constituent of ribosome;4.69012006576618e-20!GO:0008134;transcription factor binding;7.11271572472028e-20!GO:0048770;pigment granule;8.88183252207139e-20!GO:0042470;melanosome;8.88183252207139e-20!GO:0016192;vesicle-mediated transport;3.81852327775517e-19!GO:0033279;ribosomal subunit;1.11037194258767e-18!GO:0010467;gene expression;1.2188640200086e-18!GO:0044249;cellular biosynthetic process;3.0543307934636e-18!GO:0005783;endoplasmic reticulum;6.05688577763132e-18!GO:0006996;organelle organization and biogenesis;6.68578602398411e-18!GO:0012505;endomembrane system;1.00056910240662e-17!GO:0005681;spliceosome;1.97304026739637e-17!GO:0005654;nucleoplasm;2.38539336398064e-17!GO:0006119;oxidative phosphorylation;7.34765895673976e-17!GO:0005740;mitochondrial envelope;1.29696916872526e-16!GO:0031966;mitochondrial membrane;2.42741549084185e-16!GO:0019866;organelle inner membrane;1.03732190351096e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.41464525517847e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.43422703221186e-15!GO:0044445;cytosolic part;4.10654329884117e-15!GO:0019941;modification-dependent protein catabolic process;4.45355876045374e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.45355876045374e-15!GO:0044257;cellular protein catabolic process;7.57762490107892e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.49457728581343e-15!GO:0012501;programmed cell death;1.00280654524974e-14!GO:0005743;mitochondrial inner membrane;1.2560328195331e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.35561686357128e-14!GO:0043285;biopolymer catabolic process;1.44230726309811e-14!GO:0006915;apoptosis;1.67834534745354e-14!GO:0044265;cellular macromolecule catabolic process;1.95594843735976e-14!GO:0044451;nucleoplasm part;2.38043243460342e-14!GO:0030163;protein catabolic process;3.62132315539438e-14!GO:0005773;vacuole;4.08956957622249e-14!GO:0043228;non-membrane-bound organelle;4.81474841847094e-14!GO:0043232;intracellular non-membrane-bound organelle;4.81474841847094e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.23946030214341e-13!GO:0008219;cell death;1.47758619207893e-13!GO:0016265;death;1.47758619207893e-13!GO:0006457;protein folding;4.03455665023055e-13!GO:0048523;negative regulation of cellular process;6.84523601976322e-13!GO:0009057;macromolecule catabolic process;9.38453781535401e-13!GO:0048193;Golgi vesicle transport;1.02689824015946e-12!GO:0044455;mitochondrial membrane part;1.41098190310989e-12!GO:0006512;ubiquitin cycle;1.80009491541169e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.90301893746396e-12!GO:0043412;biopolymer modification;3.00460818546562e-12!GO:0022618;protein-RNA complex assembly;6.85380051623412e-12!GO:0003712;transcription cofactor activity;7.01370067209828e-12!GO:0005768;endosome;7.85089573815007e-12!GO:0006605;protein targeting;9.595640722254e-12!GO:0044432;endoplasmic reticulum part;1.00868270153041e-11!GO:0006464;protein modification process;1.42061577439239e-11!GO:0000323;lytic vacuole;1.44132073263591e-11!GO:0005764;lysosome;1.44132073263591e-11!GO:0000166;nucleotide binding;2.19314313876665e-11!GO:0016874;ligase activity;2.36373341365396e-11!GO:0048519;negative regulation of biological process;2.76423412897662e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;3.23616194766858e-11!GO:0006461;protein complex assembly;4.01310550380801e-11!GO:0016462;pyrophosphatase activity;4.30652653958223e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.28313263077683e-11!GO:0008565;protein transporter activity;8.57394106638154e-11!GO:0005746;mitochondrial respiratory chain;1.28160256776426e-10!GO:0043687;post-translational protein modification;1.39109272486642e-10!GO:0017111;nucleoside-triphosphatase activity;1.43672081582028e-10!GO:0005793;ER-Golgi intermediate compartment;2.22607309540213e-10!GO:0015935;small ribosomal subunit;3.0189062733238e-10!GO:0050794;regulation of cellular process;3.60659388804667e-10!GO:0051246;regulation of protein metabolic process;3.96977628668601e-10!GO:0031982;vesicle;4.21163280960884e-10!GO:0031988;membrane-bound vesicle;5.60863882977798e-10!GO:0006366;transcription from RNA polymerase II promoter;6.69635765333306e-10!GO:0051082;unfolded protein binding;8.12502498873272e-10!GO:0016604;nuclear body;9.7854368438615e-10!GO:0031410;cytoplasmic vesicle;1.29575181498971e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.403116595765e-09!GO:0003954;NADH dehydrogenase activity;1.403116595765e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.403116595765e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.54197184914197e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.62811431850047e-09!GO:0015934;large ribosomal subunit;2.82935092188698e-09!GO:0005635;nuclear envelope;3.83613189095484e-09!GO:0007049;cell cycle;3.95957587713244e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;6.21340507806742e-09!GO:0000375;RNA splicing, via transesterification reactions;6.21340507806742e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.21340507806742e-09!GO:0030036;actin cytoskeleton organization and biogenesis;6.4193924422561e-09!GO:0006913;nucleocytoplasmic transport;7.10327415086554e-09!GO:0044248;cellular catabolic process;7.50536234454536e-09!GO:0016607;nuclear speck;7.50536234454536e-09!GO:0019787;small conjugating protein ligase activity;1.03348020903996e-08!GO:0050789;regulation of biological process;1.17209109362127e-08!GO:0006793;phosphorus metabolic process;1.467777559519e-08!GO:0006796;phosphate metabolic process;1.467777559519e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.50542302934852e-08!GO:0007264;small GTPase mediated signal transduction;1.51572560717124e-08!GO:0048475;coated membrane;1.51572560717124e-08!GO:0030117;membrane coat;1.51572560717124e-08!GO:0008639;small protein conjugating enzyme activity;1.52712129607461e-08!GO:0043069;negative regulation of programmed cell death;1.59389633016863e-08!GO:0051169;nuclear transport;1.69618919334987e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.74664037280066e-08!GO:0008135;translation factor activity, nucleic acid binding;1.77903269112193e-08!GO:0031252;leading edge;1.79973698505621e-08!GO:0006916;anti-apoptosis;1.86579424388197e-08!GO:0044431;Golgi apparatus part;1.89789222342842e-08!GO:0043066;negative regulation of apoptosis;2.00311919879185e-08!GO:0004842;ubiquitin-protein ligase activity;2.096063138277e-08!GO:0006446;regulation of translational initiation;2.3578790848073e-08!GO:0005730;nucleolus;2.46370180056883e-08!GO:0015986;ATP synthesis coupled proton transport;2.97039911837371e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.97039911837371e-08!GO:0006259;DNA metabolic process;3.40506975503675e-08!GO:0051186;cofactor metabolic process;3.87615576331449e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.47563793383992e-08!GO:0030964;NADH dehydrogenase complex (quinone);4.90320705714875e-08!GO:0045271;respiratory chain complex I;4.90320705714875e-08!GO:0005747;mitochondrial respiratory chain complex I;4.90320705714875e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.92017209528312e-08!GO:0042775;organelle ATP synthesis coupled electron transport;4.96469281035601e-08!GO:0042773;ATP synthesis coupled electron transport;4.96469281035601e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.8666508066983e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.12186093157669e-08!GO:0016044;membrane organization and biogenesis;6.6030855770251e-08!GO:0032553;ribonucleotide binding;6.80014415917525e-08!GO:0032555;purine ribonucleotide binding;6.80014415917525e-08!GO:0031965;nuclear membrane;6.9832729924219e-08!GO:0005789;endoplasmic reticulum membrane;7.70713581678031e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.72431770816011e-08!GO:0042981;regulation of apoptosis;1.01600845734384e-07!GO:0031980;mitochondrial lumen;1.01600845734384e-07!GO:0005759;mitochondrial matrix;1.01600845734384e-07!GO:0030029;actin filament-based process;1.07885442855168e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.10594583450114e-07!GO:0030120;vesicle coat;1.23992293302529e-07!GO:0030662;coated vesicle membrane;1.23992293302529e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.26335111504148e-07!GO:0007243;protein kinase cascade;1.32226457991284e-07!GO:0016564;transcription repressor activity;1.32226457991284e-07!GO:0017076;purine nucleotide binding;1.43241591970779e-07!GO:0003743;translation initiation factor activity;1.45556817766115e-07!GO:0043067;regulation of programmed cell death;1.85025728449241e-07!GO:0006950;response to stress;1.89465007276116e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.4833035052718e-07!GO:0009055;electron carrier activity;2.56749595452342e-07!GO:0005770;late endosome;2.73911408545424e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.95862785913002e-07!GO:0016070;RNA metabolic process;3.44785295635371e-07!GO:0003713;transcription coactivator activity;4.26880697164784e-07!GO:0006413;translational initiation;4.29342630254794e-07!GO:0044453;nuclear membrane part;5.32050534823408e-07!GO:0019899;enzyme binding;5.37535698622331e-07!GO:0048522;positive regulation of cellular process;6.4454372801514e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.12834773273669e-07!GO:0003676;nucleic acid binding;8.12834773273669e-07!GO:0008092;cytoskeletal protein binding;9.00117233246755e-07!GO:0006732;coenzyme metabolic process;1.03587210152361e-06!GO:0017038;protein import;1.08585959185844e-06!GO:0044440;endosomal part;1.20978136212632e-06!GO:0010008;endosome membrane;1.20978136212632e-06!GO:0000139;Golgi membrane;1.38830852252076e-06!GO:0016881;acid-amino acid ligase activity;1.48880176055171e-06!GO:0031324;negative regulation of cellular metabolic process;1.5891553795298e-06!GO:0006754;ATP biosynthetic process;1.5891553795298e-06!GO:0006753;nucleoside phosphate metabolic process;1.5891553795298e-06!GO:0016310;phosphorylation;1.62253873399978e-06!GO:0005643;nuclear pore;2.24040920661369e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.29577091418828e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.29577091418828e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.50422509855049e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.50422509855049e-06!GO:0065007;biological regulation;2.56334055969941e-06!GO:0008361;regulation of cell size;2.67793050514149e-06!GO:0048518;positive regulation of biological process;2.74534277410523e-06!GO:0003924;GTPase activity;2.76323813610567e-06!GO:0007242;intracellular signaling cascade;3.41101526928024e-06!GO:0019829;cation-transporting ATPase activity;3.45253451855258e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.58544021520595e-06!GO:0016049;cell growth;4.5162236091543e-06!GO:0005525;GTP binding;5.12912824216444e-06!GO:0009056;catabolic process;5.35409086791612e-06!GO:0016563;transcription activator activity;5.51298707150916e-06!GO:0050657;nucleic acid transport;6.19871373809562e-06!GO:0051236;establishment of RNA localization;6.19871373809562e-06!GO:0050658;RNA transport;6.19871373809562e-06!GO:0006403;RNA localization;6.33107717115873e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.39744264014663e-06!GO:0009144;purine nucleoside triphosphate metabolic process;7.39744264014663e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.76591858702329e-06!GO:0009141;nucleoside triphosphate metabolic process;8.12352097848381e-06!GO:0005761;mitochondrial ribosome;8.1289714201694e-06!GO:0000313;organellar ribosome;8.1289714201694e-06!GO:0046034;ATP metabolic process;8.81734077755621e-06!GO:0005788;endoplasmic reticulum lumen;8.87038289879916e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.87038289879916e-06!GO:0051726;regulation of cell cycle;1.01572308498113e-05!GO:0009892;negative regulation of metabolic process;1.02165437373976e-05!GO:0003714;transcription corepressor activity;1.03344538265313e-05!GO:0000074;regulation of progression through cell cycle;1.13990470422824e-05!GO:0051170;nuclear import;1.34839190290401e-05!GO:0009150;purine ribonucleotide metabolic process;1.39590511310237e-05!GO:0005774;vacuolar membrane;1.40665438735684e-05!GO:0005798;Golgi-associated vesicle;1.44324432479824e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.64981619782006e-05!GO:0016481;negative regulation of transcription;1.76462814403897e-05!GO:0045333;cellular respiration;1.7965762755427e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.89345550487136e-05!GO:0006606;protein import into nucleus;1.94913643713098e-05!GO:0009259;ribonucleotide metabolic process;1.95631480158805e-05!GO:0005083;small GTPase regulator activity;2.04885194233968e-05!GO:0001558;regulation of cell growth;2.32712234207103e-05!GO:0046930;pore complex;2.41880207399534e-05!GO:0009060;aerobic respiration;2.75480407740508e-05!GO:0032561;guanyl ribonucleotide binding;3.00286635979693e-05!GO:0019001;guanyl nucleotide binding;3.00286635979693e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.06439055382517e-05!GO:0006163;purine nucleotide metabolic process;3.07520897513031e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.19111370728687e-05!GO:0030133;transport vesicle;3.36498515046696e-05!GO:0007265;Ras protein signal transduction;3.67144453959877e-05!GO:0030695;GTPase regulator activity;3.70910233407155e-05!GO:0006164;purine nucleotide biosynthetic process;3.9914550177836e-05!GO:0022402;cell cycle process;4.18312406782347e-05!GO:0006613;cotranslational protein targeting to membrane;4.19942878153118e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.33874870391864e-05!GO:0009260;ribonucleotide biosynthetic process;4.38101283126715e-05!GO:0032446;protein modification by small protein conjugation;4.4879105268184e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.9333632268557e-05!GO:0006897;endocytosis;5.04939743756869e-05!GO:0010324;membrane invagination;5.04939743756869e-05!GO:0065002;intracellular protein transport across a membrane;5.90161906996882e-05!GO:0009966;regulation of signal transduction;6.69260480018317e-05!GO:0005524;ATP binding;6.78685303542219e-05!GO:0016567;protein ubiquitination;7.35905475178978e-05!GO:0051188;cofactor biosynthetic process;7.7545079195896e-05!GO:0016887;ATPase activity;8.09934923383972e-05!GO:0045786;negative regulation of progression through cell cycle;8.09934923383972e-05!GO:0001726;ruffle;8.34207156746211e-05!GO:0043623;cellular protein complex assembly;8.64632628848791e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.81547410517468e-05!GO:0030118;clathrin coat;9.04110382358812e-05!GO:0032559;adenyl ribonucleotide binding;9.18546172927835e-05!GO:0001944;vasculature development;9.18546172927835e-05!GO:0000245;spliceosome assembly;9.51492274390866e-05!GO:0001568;blood vessel development;9.71142266933772e-05!GO:0044437;vacuolar part;9.90747935873762e-05!GO:0051789;response to protein stimulus;0.000101716857940187!GO:0006986;response to unfolded protein;0.000101716857940187!GO:0051028;mRNA transport;0.000107922193643856!GO:0042802;identical protein binding;0.000108793847660206!GO:0005769;early endosome;0.000111705610967057!GO:0006323;DNA packaging;0.000120620927854594!GO:0004386;helicase activity;0.000127625865418393!GO:0006099;tricarboxylic acid cycle;0.000133870977270638!GO:0046356;acetyl-CoA catabolic process;0.000133870977270638!GO:0051427;hormone receptor binding;0.000135470952403013!GO:0016787;hydrolase activity;0.000136629839508113!GO:0005667;transcription factor complex;0.000143930233657608!GO:0000151;ubiquitin ligase complex;0.000144419805371756!GO:0042623;ATPase activity, coupled;0.000147039518730822!GO:0004298;threonine endopeptidase activity;0.000147977471683014!GO:0008047;enzyme activator activity;0.000149593327449298!GO:0030532;small nuclear ribonucleoprotein complex;0.000151623621366639!GO:0003697;single-stranded DNA binding;0.000152391335517265!GO:0043566;structure-specific DNA binding;0.000154708920286647!GO:0005096;GTPase activator activity;0.000155947337830181!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000184371212508197!GO:0030554;adenyl nucleotide binding;0.000187533160050009!GO:0016197;endosome transport;0.000190363855261089!GO:0048468;cell development;0.000196548196569508!GO:0030867;rough endoplasmic reticulum membrane;0.000206701253028936!GO:0005905;coated pit;0.000207191947940834!GO:0030027;lamellipodium;0.000214405354676526!GO:0006417;regulation of translation;0.000216046048828731!GO:0065009;regulation of a molecular function;0.000216197373464822!GO:0045259;proton-transporting ATP synthase complex;0.00023714601345495!GO:0007010;cytoskeleton organization and biogenesis;0.000258498776829955!GO:0035257;nuclear hormone receptor binding;0.000262646898626836!GO:0042254;ribosome biogenesis and assembly;0.000263707211348308!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000273184516764171!GO:0016568;chromatin modification;0.000274762108406793!GO:0033116;ER-Golgi intermediate compartment membrane;0.000289998459155726!GO:0008026;ATP-dependent helicase activity;0.000291118237902644!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00031963970673128!GO:0003724;RNA helicase activity;0.00032813261032545!GO:0008250;oligosaccharyl transferase complex;0.000339918561644127!GO:0045892;negative regulation of transcription, DNA-dependent;0.000364702604067512!GO:0006752;group transfer coenzyme metabolic process;0.000365347915567058!GO:0004576;oligosaccharyl transferase activity;0.000396148771132275!GO:0008286;insulin receptor signaling pathway;0.000421315410238676!GO:0008654;phospholipid biosynthetic process;0.000453731093257247!GO:0006084;acetyl-CoA metabolic process;0.00053619767202515!GO:0005938;cell cortex;0.00055592267698307!GO:0051276;chromosome organization and biogenesis;0.000570607279512146!GO:0045045;secretory pathway;0.000599280809331552!GO:0006612;protein targeting to membrane;0.000615974582595646!GO:0030119;AP-type membrane coat adaptor complex;0.000650415363744616!GO:0005791;rough endoplasmic reticulum;0.00068766527224455!GO:0005765;lysosomal membrane;0.000701635766527!GO:0003779;actin binding;0.000726691401691075!GO:0048514;blood vessel morphogenesis;0.00074695838844322!GO:0040008;regulation of growth;0.000776264274377821!GO:0009108;coenzyme biosynthetic process;0.000804719010158614!GO:0033673;negative regulation of kinase activity;0.00082822547461581!GO:0006469;negative regulation of protein kinase activity;0.00082822547461581!GO:0006974;response to DNA damage stimulus;0.000869311971232532!GO:0031902;late endosome membrane;0.000883540712400401!GO:0009967;positive regulation of signal transduction;0.000917261660048626!GO:0030131;clathrin adaptor complex;0.000932673816673093!GO:0005885;Arp2/3 protein complex;0.00105931067096495!GO:0005099;Ras GTPase activator activity;0.00112223133632557!GO:0007033;vacuole organization and biogenesis;0.00122046154944554!GO:0007040;lysosome organization and biogenesis;0.00126892529415928!GO:0001525;angiogenesis;0.00128845579894592!GO:0009109;coenzyme catabolic process;0.00137918837952557!GO:0045637;regulation of myeloid cell differentiation;0.00139881703120706!GO:0016853;isomerase activity;0.00149103134188476!GO:0032940;secretion by cell;0.00161972031093422!GO:0030132;clathrin coat of coated pit;0.00174371154483128!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00176981470532055!GO:0005741;mitochondrial outer membrane;0.00184601919815595!GO:0006333;chromatin assembly or disassembly;0.00186677419517608!GO:0005048;signal sequence binding;0.00186762777421709!GO:0051348;negative regulation of transferase activity;0.00187888822841837!GO:0051187;cofactor catabolic process;0.00192733863168624!GO:0051270;regulation of cell motility;0.00192733863168624!GO:0051168;nuclear export;0.00192733863168624!GO:0043021;ribonucleoprotein binding;0.00195466879608329!GO:0005159;insulin-like growth factor receptor binding;0.00201961097251682!GO:0048471;perinuclear region of cytoplasm;0.00204474124074059!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00206111832976563!GO:0000785;chromatin;0.00209553207283816!GO:0051920;peroxiredoxin activity;0.00222002356215244!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00226380453307436!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00228104428291602!GO:0004812;aminoacyl-tRNA ligase activity;0.00228104428291602!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00228104428291602!GO:0015980;energy derivation by oxidation of organic compounds;0.00233671087136142!GO:0007005;mitochondrion organization and biogenesis;0.00234539633591364!GO:0008186;RNA-dependent ATPase activity;0.00240232295793612!GO:0046983;protein dimerization activity;0.00240324434237345!GO:0006402;mRNA catabolic process;0.00247630217497332!GO:0018196;peptidyl-asparagine modification;0.00256171673228933!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00256171673228933!GO:0065004;protein-DNA complex assembly;0.00258096582642276!GO:0035258;steroid hormone receptor binding;0.00266658249003781!GO:0031968;organelle outer membrane;0.00267879939853104!GO:0030218;erythrocyte differentiation;0.00277885303350826!GO:0030658;transport vesicle membrane;0.00281987489947631!GO:0016791;phosphoric monoester hydrolase activity;0.00292011947793819!GO:0019867;outer membrane;0.0030475925473546!GO:0006891;intra-Golgi vesicle-mediated transport;0.00313357160091264!GO:0030663;COPI coated vesicle membrane;0.00317242387031194!GO:0030126;COPI vesicle coat;0.00317242387031194!GO:0031326;regulation of cellular biosynthetic process;0.00334035978576485!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00358298891027941!GO:0007167;enzyme linked receptor protein signaling pathway;0.00366645472876885!GO:0030518;steroid hormone receptor signaling pathway;0.00380920341723996!GO:0051674;localization of cell;0.00384131326383915!GO:0006928;cell motility;0.00384131326383915!GO:0045454;cell redox homeostasis;0.00384131326383915!GO:0043038;amino acid activation;0.00419158905542075!GO:0006418;tRNA aminoacylation for protein translation;0.00419158905542075!GO:0043039;tRNA aminoacylation;0.00419158905542075!GO:0009719;response to endogenous stimulus;0.00455223691337194!GO:0040011;locomotion;0.00456026847160391!GO:0030521;androgen receptor signaling pathway;0.00491989323298209!GO:0051252;regulation of RNA metabolic process;0.00510129950769619!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0051945549397812!GO:0006650;glycerophospholipid metabolic process;0.00531526043115923!GO:0008283;cell proliferation;0.00535380508350697!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00541085134207635!GO:0048487;beta-tubulin binding;0.0054337052621945!GO:0040012;regulation of locomotion;0.00546836006475559!GO:0048500;signal recognition particle;0.00559906353549072!GO:0045893;positive regulation of transcription, DNA-dependent;0.00560981212203102!GO:0030127;COPII vesicle coat;0.00566396070252294!GO:0012507;ER to Golgi transport vesicle membrane;0.00566396070252294!GO:0050790;regulation of catalytic activity;0.00567960055581524!GO:0006643;membrane lipid metabolic process;0.00576171752195332!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0057969640591056!GO:0045941;positive regulation of transcription;0.00584587818069339!GO:0006281;DNA repair;0.00588618205439283!GO:0051087;chaperone binding;0.00597857240444894!GO:0048646;anatomical structure formation;0.00603916371307164!GO:0030134;ER to Golgi transport vesicle;0.0061038826529116!GO:0009117;nucleotide metabolic process;0.00611098632194993!GO:0030384;phosphoinositide metabolic process;0.00618315705369264!GO:0004004;ATP-dependent RNA helicase activity;0.00624434271960091!GO:0016859;cis-trans isomerase activity;0.00653631245143429!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00670508199032658!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00673415080555805!GO:0007050;cell cycle arrest;0.00681122285302125!GO:0019222;regulation of metabolic process;0.00690012559088121!GO:0030660;Golgi-associated vesicle membrane;0.00693215130755576!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00724605836928578!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00724605836928578!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00724605836928578!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00724605836928578!GO:0001666;response to hypoxia;0.00727442015690992!GO:0003690;double-stranded DNA binding;0.00752631458646031!GO:0006260;DNA replication;0.00760568675303824!GO:0009889;regulation of biosynthetic process;0.00771402933668045!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00781651870219419!GO:0051128;regulation of cellular component organization and biogenesis;0.0081686603706062!GO:0003729;mRNA binding;0.00822144643018978!GO:0008234;cysteine-type peptidase activity;0.00830356889819476!GO:0019838;growth factor binding;0.00886479503556341!GO:0031901;early endosome membrane;0.00894782826054125!GO:0051325;interphase;0.00895294626997472!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00899898300971187!GO:0022890;inorganic cation transmembrane transporter activity;0.0090223842555336!GO:0016363;nuclear matrix;0.00904160698503466!GO:0008610;lipid biosynthetic process;0.00914931711347403!GO:0006364;rRNA processing;0.00914931711347403!GO:0006487;protein amino acid N-linked glycosylation;0.00917415806614998!GO:0022415;viral reproductive process;0.00924945306080293!GO:0000278;mitotic cell cycle;0.00950934167378507!GO:0004721;phosphoprotein phosphatase activity;0.00954298221877798!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00958272069186378!GO:0031589;cell-substrate adhesion;0.00959295483108283!GO:0016311;dephosphorylation;0.00971041816438214!GO:0030137;COPI-coated vesicle;0.0098879790900263!GO:0019904;protein domain specific binding;0.00997699487899795!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0100874403106248!GO:0017166;vinculin binding;0.0104508884355432!GO:0000059;protein import into nucleus, docking;0.0105682407181201!GO:0006818;hydrogen transport;0.0114125577722917!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0118528750337223!GO:0008139;nuclear localization sequence binding;0.0118745868762054!GO:0005813;centrosome;0.0123593845895809!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0124224593177138!GO:0008154;actin polymerization and/or depolymerization;0.0124224593177138!GO:0001725;stress fiber;0.0124224593177138!GO:0032432;actin filament bundle;0.0124224593177138!GO:0030100;regulation of endocytosis;0.0127404496500154!GO:0006644;phospholipid metabolic process;0.0127446689993101!GO:0006401;RNA catabolic process;0.0130323279020249!GO:0015036;disulfide oxidoreductase activity;0.013306273473963!GO:0006607;NLS-bearing substrate import into nucleus;0.013336711844507!GO:0031072;heat shock protein binding;0.0134213268137004!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0135772303469379!GO:0051329;interphase of mitotic cell cycle;0.013603153202351!GO:0016072;rRNA metabolic process;0.0136931074979829!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0139766551707411!GO:0045047;protein targeting to ER;0.0139766551707411!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0141623582309754!GO:0050811;GABA receptor binding;0.0142428528263266!GO:0005694;chromosome;0.0142481693147242!GO:0051098;regulation of binding;0.0146134968071719!GO:0007266;Rho protein signal transduction;0.0147118121076943!GO:0030125;clathrin vesicle coat;0.014836569591729!GO:0030665;clathrin coated vesicle membrane;0.014836569591729!GO:0005100;Rho GTPase activator activity;0.014940318766706!GO:0006611;protein export from nucleus;0.015329823596001!GO:0043087;regulation of GTPase activity;0.0155432133711185!GO:0051301;cell division;0.015609665079627!GO:0043488;regulation of mRNA stability;0.015609665079627!GO:0043487;regulation of RNA stability;0.015609665079627!GO:0051338;regulation of transferase activity;0.0156545597099941!GO:0030659;cytoplasmic vesicle membrane;0.0157491173261251!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0162457417567535!GO:0005912;adherens junction;0.0163878650011499!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0165228703551221!GO:0001527;microfibril;0.0169513343855611!GO:0006509;membrane protein ectodomain proteolysis;0.0169513343855611!GO:0033619;membrane protein proteolysis;0.0169513343855611!GO:0015992;proton transport;0.0172478407805888!GO:0030176;integral to endoplasmic reticulum membrane;0.0175652095611048!GO:0030099;myeloid cell differentiation;0.0176068882104691!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0176294012909149!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0178326766355622!GO:0030334;regulation of cell migration;0.018529421697675!GO:0006984;ER-nuclear signaling pathway;0.0185745465126914!GO:0051235;maintenance of localization;0.01907742259075!GO:0012506;vesicle membrane;0.0198874582632721!GO:0004177;aminopeptidase activity;0.0200955642918174!GO:0016860;intramolecular oxidoreductase activity;0.0202822415268148!GO:0007160;cell-matrix adhesion;0.0205692916207424!GO:0030522;intracellular receptor-mediated signaling pathway;0.0209247741737816!GO:0005869;dynactin complex;0.0209261039896284!GO:0047485;protein N-terminus binding;0.0209424139703406!GO:0046467;membrane lipid biosynthetic process;0.0211574903585758!GO:0004860;protein kinase inhibitor activity;0.0217414128781881!GO:0050681;androgen receptor binding;0.0217811300349897!GO:0045792;negative regulation of cell size;0.0220476007585906!GO:0006672;ceramide metabolic process;0.0224531822097927!GO:0006979;response to oxidative stress;0.0229131297366072!GO:0006026;aminoglycan catabolic process;0.0238313531787603!GO:0006027;glycosaminoglycan catabolic process;0.0238313531787603!GO:0003756;protein disulfide isomerase activity;0.0238313531787603!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0238313531787603!GO:0044427;chromosomal part;0.0238536590156756!GO:0007034;vacuolar transport;0.02412434959405!GO:0000902;cell morphogenesis;0.0243870538219397!GO:0032989;cellular structure morphogenesis;0.0243870538219397!GO:0030041;actin filament polymerization;0.0244450971468272!GO:0045334;clathrin-coated endocytic vesicle;0.0247523819041383!GO:0051336;regulation of hydrolase activity;0.0248869901702864!GO:0008312;7S RNA binding;0.0249856684601521!GO:0006508;proteolysis;0.025025869548866!GO:0051101;regulation of DNA binding;0.0254904711193606!GO:0046519;sphingoid metabolic process;0.0265593064703585!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0266429035125662!GO:0043065;positive regulation of apoptosis;0.0274035694554672!GO:0002020;protease binding;0.0280989265496453!GO:0046489;phosphoinositide biosynthetic process;0.0284188004342426!GO:0030308;negative regulation of cell growth;0.0284220178881098!GO:0005762;mitochondrial large ribosomal subunit;0.0286374214605678!GO:0000315;organellar large ribosomal subunit;0.0286374214605678!GO:0031625;ubiquitin protein ligase binding;0.0286896018186544!GO:0006470;protein amino acid dephosphorylation;0.028802797055575!GO:0008243;plasminogen activator activity;0.0290405898493301!GO:0007028;cytoplasm organization and biogenesis;0.029057891100828!GO:0004563;beta-N-acetylhexosaminidase activity;0.0290584810439184!GO:0043549;regulation of kinase activity;0.0296023505087549!GO:0030833;regulation of actin filament polymerization;0.0296394106814436!GO:0006091;generation of precursor metabolites and energy;0.0299306650110055!GO:0006376;mRNA splice site selection;0.0304541198491396!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0304541198491396!GO:0007569;cell aging;0.0305506517969039!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0305506517969039!GO:0043086;negative regulation of catalytic activity;0.0306752318299542!GO:0044433;cytoplasmic vesicle part;0.0309262862921142!GO:0046474;glycerophospholipid biosynthetic process;0.0316538468359813!GO:0031529;ruffle organization and biogenesis;0.0323043919355544!GO:0019843;rRNA binding;0.0327681335607762!GO:0007565;female pregnancy;0.0327681335607762!GO:0005684;U2-dependent spliceosome;0.0330051151746814!GO:0016584;nucleosome positioning;0.033348078398888!GO:0003702;RNA polymerase II transcription factor activity;0.0338405053902897!GO:0051056;regulation of small GTPase mediated signal transduction;0.0341888411765984!GO:0030128;clathrin coat of endocytic vesicle;0.0342907772060008!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0342907772060008!GO:0030122;AP-2 adaptor complex;0.0342907772060008!GO:0045638;negative regulation of myeloid cell differentiation;0.0352936071163535!GO:0005606;laminin-1 complex;0.0356147671546451!GO:0051287;NAD binding;0.0359357103211452!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0359357103211452!GO:0015002;heme-copper terminal oxidase activity;0.0359357103211452!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0359357103211452!GO:0004129;cytochrome-c oxidase activity;0.0359357103211452!GO:0006414;translational elongation;0.0361992139515979!GO:0006892;post-Golgi vesicle-mediated transport;0.0365531435686298!GO:0043068;positive regulation of programmed cell death;0.0368873364192144!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0368873364192144!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0369118422416227!GO:0033043;regulation of organelle organization and biogenesis;0.0369118422416227!GO:0045767;regulation of anti-apoptosis;0.037589399451818!GO:0007041;lysosomal transport;0.0378989369828376!GO:0008147;structural constituent of bone;0.0379867125151492!GO:0005862;muscle thin filament tropomyosin;0.0383801243584009!GO:0020027;hemoglobin metabolic process;0.0388413573425912!GO:0042541;hemoglobin biosynthetic process;0.0388413573425912!GO:0007030;Golgi organization and biogenesis;0.0388914282996612!GO:0019079;viral genome replication;0.0392818155440081!GO:0030258;lipid modification;0.0392818155440081!GO:0005815;microtubule organizing center;0.0407765377126438!GO:0044255;cellular lipid metabolic process;0.0409563455013253!GO:0044448;cell cortex part;0.041448829782946!GO:0008287;protein serine/threonine phosphatase complex;0.0414868155531581!GO:0046839;phospholipid dephosphorylation;0.041589456638706!GO:0004197;cysteine-type endopeptidase activity;0.041589456638706!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0420105276203409!GO:0006911;phagocytosis, engulfment;0.0423317476705205!GO:0043022;ribosome binding;0.0423986478900489!GO:0015629;actin cytoskeleton;0.0431814568558318!GO:0007006;mitochondrial membrane organization and biogenesis;0.043365298858894!GO:0045639;positive regulation of myeloid cell differentiation;0.0434454752355357!GO:0006399;tRNA metabolic process;0.0435446986764798!GO:0045859;regulation of protein kinase activity;0.044320094250543!GO:0006518;peptide metabolic process;0.0446904942631601!GO:0004185;serine carboxypeptidase activity;0.0454834306750674!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0457356489713523!GO:0005669;transcription factor TFIID complex;0.046190302663082!GO:0030832;regulation of actin filament length;0.0466671038493695!GO:0051540;metal cluster binding;0.0466671038493695!GO:0051536;iron-sulfur cluster binding;0.0466671038493695!GO:0006352;transcription initiation;0.046690655044669!GO:0043560;insulin receptor substrate binding;0.048221454877033!GO:0009893;positive regulation of metabolic process;0.0499607803572478 | |||
|sample_id=10021 | |sample_id=10021 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=placenta | |sample_tissue=placenta | ||
|top_motifs=FOX{D1,D2}:2.36279481902;FOXO1,3,4:2.35383088188;TBP:2.23182657007;ZNF238:1.99946056729;XCPE1{core}:1.94690693706;MAZ:1.70723345043;TFAP2{A,C}:1.61701210632;EP300:1.50056174552;SP1:1.44683473872;IKZF1:1.42610619636;RORA:1.34210153635;PATZ1:1.3068823405;TFCP2:1.28584030611;GZF1:1.27343837432;TEAD1:1.26814517258;STAT2,4,6:1.20687257209;NR1H4:1.19784355897;MYBL2:1.15082323003;SOX5:1.12029142539;ALX1:1.11453663948;BPTF:1.1130237024;FOX{I1,J2}:1.09467240379;MED-1{core}:1.07844214581;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07287954132;NKX3-2:1.05630471276;SMAD1..7,9:1.03511497557;NFATC1..3:1.02496112539;SNAI1..3:1.00068633794;PPARG:0.976372543929;EBF1:0.930354584935;ZNF148:0.870354409419;GCM1,2:0.854841033301;SRF:0.832761372595;NKX2-1,4:0.80999442477;GATA6:0.798533134165;TGIF1:0.795142516797;HAND1,2:0.783257838446;HIC1:0.771491359918;GTF2I:0.770346491754;ZEB1:0.743797391558;IRF1,2:0.715478029344;FOXQ1:0.634713421332;SREBF1,2:0.625312153061;PAX5:0.609074191427;AR:0.607133522305;TLX1..3_NFIC{dimer}:0.594980148066;MZF1:0.5947432385;CDC5L:0.592507932005;TLX2:0.55175500856;TFAP4:0.545043766506;EN1,2:0.532917837828;PRDM1:0.518790659535;IRF7:0.514828912213;TBX4,5:0.509151368102;GLI1..3:0.501417721618;ESR1:0.498738331235;HOX{A6,A7,B6,B7}:0.492617652602;POU3F1..4:0.489703915018;GTF2A1,2:0.480839130352;TEF:0.477909692858;HLF:0.455385538953;SPZ1:0.450198457698;TFAP2B:0.443807910211;ZIC1..3:0.442388146011;MYOD1:0.441508480228;FOXL1:0.437033200666;EVI1:0.410818235827;ETS1,2:0.407373356652;FOXN1:0.369894448402;HNF1A:0.367013764717;ZFP161:0.342050965145;NKX3-1:0.318451654813;KLF4:0.3151727155;PAX1,9:0.286056183833;ZNF423:0.268783022293;NANOG:0.262518610446;MYFfamily:0.257733256949;MAFB:0.247825094924;TP53:0.236916023814;NHLH1,2:0.234641473303;ATF2:0.227846051364;STAT1,3:0.211426463364;POU1F1:0.206676556257;POU6F1:0.177096922007;NR3C1:0.17460861512;SPIB:0.170787694901;MTE{core}:0.150457427024;EGR1..3:0.149706813563;MTF1:0.149043477493;ELF1,2,4:0.145847817434;ATF6:0.145184893925;HSF1,2:0.128462527157;FOX{F1,F2,J1}:0.11371480187;CRX:0.103336703638;HBP1_HMGB_SSRP1_UBTF:0.0722396735796;HNF4A_NR2F1,2:0.0695114652468;NR6A1:0.0691257673287;SPI1:0.0603199392877;NFE2L2:0.0600658243501;FOXA2:0.0548744326376;HMX1:0.0448274770117;JUN:0.0391958303318;POU2F1..3:0.0285064116922;NANOG{mouse}:0.0197101703288;GFI1:0.0169102361667;GATA4:-0.0141508947559;MEF2{A,B,C,D}:-0.0200884255138;VSX1,2:-0.099552076095;SOX17:-0.108074683907;NFIL3:-0.122162141393;PAX8:-0.13474014822;ATF4:-0.140113471104;RXRA_VDR{dimer}:-0.151533160399;TOPORS:-0.167997264799;FOS_FOS{B,L1}_JUN{B,D}:-0.193850366131;GFI1B:-0.199781097182;PBX1:-0.216646010529;RREB1:-0.226194889418;FOXP3:-0.234271333366;NFE2:-0.254339520058;UFEwm:-0.273554324518;BACH2:-0.278820205734;ADNP_IRX_SIX_ZHX:-0.292538190381;bHLH_family:-0.295463676508;ALX4:-0.299108781773;SOX2:-0.302545918083;FOSL2:-0.314122544152;ZNF143:-0.315691893099;E2F1..5:-0.322838818981;CEBPA,B_DDIT3:-0.323878662925;XBP1:-0.347955539421;FOXD3:-0.385438220092;ESRRA:-0.416432282104;DMAP1_NCOR{1,2}_SMARC:-0.426532163862;NRF1:-0.436297830016;T:-0.436314020016;HMGA1,2:-0.446043970592;RBPJ:-0.451328466783;SOX{8,9,10}:-0.457969620369;PAX2:-0.460476481832;RUNX1..3:-0.464582413426;HOX{A4,D4}:-0.467524811576;HOX{A5,B5}:-0.487338677001;FOXP1:-0.488237582426;ZBTB6:-0.488551933603;NFKB1_REL_RELA:-0.490717958768;ZNF384:-0.496614677511;PRRX1,2:-0.514606303699;NKX2-2,8:-0.514901020232;IKZF2:-0.52757955253;FOXM1:-0.554773179886;BREu{core}:-0.567014287559;HIF1A:-0.57885408547;ATF5_CREB3:-0.579645076916;CUX2:-0.585352038047;NFIX:-0.588942393658;HOXA9_MEIS1:-0.596513184728;NFE2L1:-0.602740543613;LEF1_TCF7_TCF7L1,2:-0.605761144198;STAT5{A,B}:-0.629593575619;PAX6:-0.649714169046;NFY{A,B,C}:-0.661965853003;RFX2..5_RFXANK_RFXAP:-0.678953659609;OCT4_SOX2{dimer}:-0.692642510773;PAX3,7:-0.703658705687;ARID5B:-0.716664966728;CREB1:-0.727580841642;REST:-0.728279820478;LMO2:-0.746181325458;RFX1:-0.768744521257;NR5A1,2:-0.804796920458;HES1:-0.821074986281;AHR_ARNT_ARNT2:-0.821226529524;AIRE:-0.854417678542;PDX1:-0.928069082308;TAL1_TCF{3,4,12}:-0.949165544638;YY1:-0.961360953977;TFDP1:-0.968946557765;RXR{A,B,G}:-0.97723216837;DBP:-1.00256435366;ELK1,4_GABP{A,B1}:-1.02172419737;MYB:-1.07444474443;CDX1,2,4:-1.09596258254;PITX1..3:-1.13781749111;PAX4:-1.14487642497;NKX2-3_NKX2-5:-1.19163820931;POU5F1:-1.20870064818;NKX6-1,2:-1.30863813444;LHX3,4:-1.36767944011;ONECUT1,2:-1.37613523918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.44131131883;ZBTB16:-1.7721292084 | |top_motifs=FOX{D1,D2}:2.36279481902;FOXO1,3,4:2.35383088188;TBP:2.23182657007;ZNF238:1.99946056729;XCPE1{core}:1.94690693706;MAZ:1.70723345043;TFAP2{A,C}:1.61701210632;EP300:1.50056174552;SP1:1.44683473872;IKZF1:1.42610619636;RORA:1.34210153635;PATZ1:1.3068823405;TFCP2:1.28584030611;GZF1:1.27343837432;TEAD1:1.26814517258;STAT2,4,6:1.20687257209;NR1H4:1.19784355897;MYBL2:1.15082323003;SOX5:1.12029142539;ALX1:1.11453663948;BPTF:1.1130237024;FOX{I1,J2}:1.09467240379;MED-1{core}:1.07844214581;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07287954132;NKX3-2:1.05630471276;SMAD1..7,9:1.03511497557;NFATC1..3:1.02496112539;SNAI1..3:1.00068633794;PPARG:0.976372543929;EBF1:0.930354584935;ZNF148:0.870354409419;GCM1,2:0.854841033301;SRF:0.832761372595;NKX2-1,4:0.80999442477;GATA6:0.798533134165;TGIF1:0.795142516797;HAND1,2:0.783257838446;HIC1:0.771491359918;GTF2I:0.770346491754;ZEB1:0.743797391558;IRF1,2:0.715478029344;FOXQ1:0.634713421332;SREBF1,2:0.625312153061;PAX5:0.609074191427;AR:0.607133522305;TLX1..3_NFIC{dimer}:0.594980148066;MZF1:0.5947432385;CDC5L:0.592507932005;TLX2:0.55175500856;TFAP4:0.545043766506;EN1,2:0.532917837828;PRDM1:0.518790659535;IRF7:0.514828912213;TBX4,5:0.509151368102;GLI1..3:0.501417721618;ESR1:0.498738331235;HOX{A6,A7,B6,B7}:0.492617652602;POU3F1..4:0.489703915018;GTF2A1,2:0.480839130352;TEF:0.477909692858;HLF:0.455385538953;SPZ1:0.450198457698;TFAP2B:0.443807910211;ZIC1..3:0.442388146011;MYOD1:0.441508480228;FOXL1:0.437033200666;EVI1:0.410818235827;ETS1,2:0.407373356652;FOXN1:0.369894448402;HNF1A:0.367013764717;ZFP161:0.342050965145;NKX3-1:0.318451654813;KLF4:0.3151727155;PAX1,9:0.286056183833;ZNF423:0.268783022293;NANOG:0.262518610446;MYFfamily:0.257733256949;MAFB:0.247825094924;TP53:0.236916023814;NHLH1,2:0.234641473303;ATF2:0.227846051364;STAT1,3:0.211426463364;POU1F1:0.206676556257;POU6F1:0.177096922007;NR3C1:0.17460861512;SPIB:0.170787694901;MTE{core}:0.150457427024;EGR1..3:0.149706813563;MTF1:0.149043477493;ELF1,2,4:0.145847817434;ATF6:0.145184893925;HSF1,2:0.128462527157;FOX{F1,F2,J1}:0.11371480187;CRX:0.103336703638;HBP1_HMGB_SSRP1_UBTF:0.0722396735796;HNF4A_NR2F1,2:0.0695114652468;NR6A1:0.0691257673287;SPI1:0.0603199392877;NFE2L2:0.0600658243501;FOXA2:0.0548744326376;HMX1:0.0448274770117;JUN:0.0391958303318;POU2F1..3:0.0285064116922;NANOG{mouse}:0.0197101703288;GFI1:0.0169102361667;GATA4:-0.0141508947559;MEF2{A,B,C,D}:-0.0200884255138;VSX1,2:-0.099552076095;SOX17:-0.108074683907;NFIL3:-0.122162141393;PAX8:-0.13474014822;ATF4:-0.140113471104;RXRA_VDR{dimer}:-0.151533160399;TOPORS:-0.167997264799;FOS_FOS{B,L1}_JUN{B,D}:-0.193850366131;GFI1B:-0.199781097182;PBX1:-0.216646010529;RREB1:-0.226194889418;FOXP3:-0.234271333366;NFE2:-0.254339520058;UFEwm:-0.273554324518;BACH2:-0.278820205734;ADNP_IRX_SIX_ZHX:-0.292538190381;bHLH_family:-0.295463676508;ALX4:-0.299108781773;SOX2:-0.302545918083;FOSL2:-0.314122544152;ZNF143:-0.315691893099;E2F1..5:-0.322838818981;CEBPA,B_DDIT3:-0.323878662925;XBP1:-0.347955539421;FOXD3:-0.385438220092;ESRRA:-0.416432282104;DMAP1_NCOR{1,2}_SMARC:-0.426532163862;NRF1:-0.436297830016;T:-0.436314020016;HMGA1,2:-0.446043970592;RBPJ:-0.451328466783;SOX{8,9,10}:-0.457969620369;PAX2:-0.460476481832;RUNX1..3:-0.464582413426;HOX{A4,D4}:-0.467524811576;HOX{A5,B5}:-0.487338677001;FOXP1:-0.488237582426;ZBTB6:-0.488551933603;NFKB1_REL_RELA:-0.490717958768;ZNF384:-0.496614677511;PRRX1,2:-0.514606303699;NKX2-2,8:-0.514901020232;IKZF2:-0.52757955253;FOXM1:-0.554773179886;BREu{core}:-0.567014287559;HIF1A:-0.57885408547;ATF5_CREB3:-0.579645076916;CUX2:-0.585352038047;NFIX:-0.588942393658;HOXA9_MEIS1:-0.596513184728;NFE2L1:-0.602740543613;LEF1_TCF7_TCF7L1,2:-0.605761144198;STAT5{A,B}:-0.629593575619;PAX6:-0.649714169046;NFY{A,B,C}:-0.661965853003;RFX2..5_RFXANK_RFXAP:-0.678953659609;OCT4_SOX2{dimer}:-0.692642510773;PAX3,7:-0.703658705687;ARID5B:-0.716664966728;CREB1:-0.727580841642;REST:-0.728279820478;LMO2:-0.746181325458;RFX1:-0.768744521257;NR5A1,2:-0.804796920458;HES1:-0.821074986281;AHR_ARNT_ARNT2:-0.821226529524;AIRE:-0.854417678542;PDX1:-0.928069082308;TAL1_TCF{3,4,12}:-0.949165544638;YY1:-0.961360953977;TFDP1:-0.968946557765;RXR{A,B,G}:-0.97723216837;DBP:-1.00256435366;ELK1,4_GABP{A,B1}:-1.02172419737;MYB:-1.07444474443;CDX1,2,4:-1.09596258254;PITX1..3:-1.13781749111;PAX4:-1.14487642497;NKX2-3_NKX2-5:-1.19163820931;POU5F1:-1.20870064818;NKX6-1,2:-1.30863813444;LHX3,4:-1.36767944011;ONECUT1,2:-1.37613523918;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.44131131883;ZBTB16:-1.7721292084 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10021-101D3;search_select_hide=table117:FF:10021-101D3 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | placenta, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10627 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10627
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10627
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.211 |
| 10 | 10 | 0.0846 |
| 100 | 100 | 0.132 |
| 101 | 101 | 0.738 |
| 102 | 102 | 0.465 |
| 103 | 103 | 0.383 |
| 104 | 104 | 0.576 |
| 105 | 105 | 0.33 |
| 106 | 106 | 0.384 |
| 107 | 107 | 0.0352 |
| 108 | 108 | 0.79 |
| 109 | 109 | 0.382 |
| 11 | 11 | 0.585 |
| 110 | 110 | 0.562 |
| 111 | 111 | 0.0044 |
| 112 | 112 | 0.753 |
| 113 | 113 | 0.00131 |
| 114 | 114 | 0.799 |
| 115 | 115 | 0.779 |
| 116 | 116 | 0.329 |
| 117 | 117 | 0.154 |
| 118 | 118 | 0.327 |
| 119 | 119 | 0.632 |
| 12 | 12 | 0.217 |
| 120 | 120 | 0.992 |
| 121 | 121 | 0.664 |
| 122 | 122 | 0.836 |
| 123 | 123 | 0.00968 |
| 124 | 124 | 0.423 |
| 125 | 125 | 0.493 |
| 126 | 126 | 0.255 |
| 127 | 127 | 0.0318 |
| 128 | 128 | 0.762 |
| 129 | 129 | 0.658 |
| 13 | 13 | 0.597 |
| 130 | 130 | 0.898 |
| 131 | 131 | 0.203 |
| 132 | 132 | 0.162 |
| 133 | 133 | 0.135 |
| 134 | 134 | 0.469 |
| 135 | 135 | 0.0278 |
| 136 | 136 | 0.908 |
| 137 | 137 | 0.605 |
| 138 | 138 | 0.6 |
| 139 | 139 | 0.664 |
| 14 | 14 | 0.711 |
| 140 | 140 | 0.483 |
| 141 | 141 | 0.705 |
| 142 | 142 | 0.483 |
| 143 | 143 | 0.028 |
| 144 | 144 | 0.0752 |
| 145 | 145 | 0.801 |
| 146 | 146 | 0.123 |
| 147 | 147 | 0.883 |
| 148 | 148 | 0.775 |
| 149 | 149 | 0.175 |
| 15 | 15 | 0.177 |
| 150 | 150 | 0.783 |
| 151 | 151 | 0.716 |
| 152 | 152 | 0.0442 |
| 153 | 153 | 0.437 |
| 154 | 154 | 0.315 |
| 155 | 155 | 0.952 |
| 156 | 156 | 0.52 |
| 157 | 157 | 0.294 |
| 158 | 158 | 0.323 |
| 159 | 159 | 0.532 |
| 16 | 16 | 0.654 |
| 160 | 160 | 0.997 |
| 161 | 161 | 0.302 |
| 162 | 162 | 0.202 |
| 163 | 163 | 0.741 |
| 164 | 164 | 0.113 |
| 165 | 165 | 0.479 |
| 166 | 166 | 0.592 |
| 167 | 167 | 0.00163 |
| 168 | 168 | 0.897 |
| 169 | 169 | 0.304 |
| 17 | 17 | 0.713 |
| 18 | 18 | 0.0516 |
| 19 | 19 | 0.139 |
| 2 | 2 | 0.0879 |
| 20 | 20 | 0.122 |
| 21 | 21 | 0.766 |
| 22 | 22 | 0.32 |
| 23 | 23 | 0.0948 |
| 24 | 24 | 0.969 |
| 25 | 25 | 0.56 |
| 26 | 26 | 0.705 |
| 27 | 27 | 0.771 |
| 28 | 28 | 0.945 |
| 29 | 29 | 0.0243 |
| 3 | 3 | 0.43 |
| 30 | 30 | 0.0227 |
| 31 | 31 | 0.885 |
| 32 | 32 | 0.291 |
| 33 | 33 | 0.298 |
| 34 | 34 | 0.152 |
| 35 | 35 | 0.416 |
| 36 | 36 | 0.0978 |
| 37 | 37 | 0.645 |
| 38 | 38 | 0.887 |
| 39 | 39 | 0.388 |
| 4 | 4 | 0.143 |
| 40 | 40 | 0.675 |
| 41 | 41 | 0.119 |
| 42 | 42 | 0.424 |
| 43 | 43 | 0.599 |
| 44 | 44 | 0.918 |
| 45 | 45 | 0.0183 |
| 46 | 46 | 0.433 |
| 47 | 47 | 0.317 |
| 48 | 48 | 0.603 |
| 49 | 49 | 0.47 |
| 5 | 5 | 0.803 |
| 50 | 50 | 0.427 |
| 51 | 51 | 0.834 |
| 52 | 52 | 0.249 |
| 53 | 53 | 0.884 |
| 54 | 54 | 0.765 |
| 55 | 55 | 0.987 |
| 56 | 56 | 0.7 |
| 57 | 57 | 0.456 |
| 58 | 58 | 0.716 |
| 59 | 59 | 0.582 |
| 6 | 6 | 0.545 |
| 60 | 60 | 0.607 |
| 61 | 61 | 0.264 |
| 62 | 62 | 0.722 |
| 63 | 63 | 0.892 |
| 64 | 64 | 0.767 |
| 65 | 65 | 0.5 |
| 66 | 66 | 0.177 |
| 67 | 67 | 0.906 |
| 68 | 68 | 0.331 |
| 69 | 69 | 0.44 |
| 7 | 7 | 0.987 |
| 70 | 70 | 0.972 |
| 71 | 71 | 0.246 |
| 72 | 72 | 0.98 |
| 73 | 73 | 0.785 |
| 74 | 74 | 0.0938 |
| 75 | 75 | 0.0456 |
| 76 | 76 | 0.0503 |
| 77 | 77 | 0.0746 |
| 78 | 78 | 0.931 |
| 79 | 79 | 0.592 |
| 8 | 8 | 0.224 |
| 80 | 80 | 0.353 |
| 81 | 81 | 0.0732 |
| 82 | 82 | 0.986 |
| 83 | 83 | 0.535 |
| 84 | 84 | 0.309 |
| 85 | 85 | 0.44 |
| 86 | 86 | 0.682 |
| 87 | 87 | 0.0476 |
| 88 | 88 | 0.709 |
| 89 | 89 | 0.205 |
| 9 | 9 | 0.181 |
| 90 | 90 | 0.692 |
| 91 | 91 | 0.452 |
| 92 | 92 | 0.972 |
| 93 | 93 | 0.758 |
| 94 | 94 | 0.193 |
| 95 | 95 | 0.115 |
| 96 | 96 | 0.412 |
| 97 | 97 | 0.0857 |
| 98 | 98 | 0.767 |
| 99 | 99 | 0.497 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10627
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010021 human placenta - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001987 (placenta)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010021 (human placenta - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0003124 (chorion)
UBERON:0010316 (germ layer / neural crest)
