FF:10568-108B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005180 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007935;DRR008807;DRZ000232;DRZ001617;DRZ011582;DRZ012967 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:10568-108B1 | |fonse_cell_line=FF:10568-108B1 | ||
|fonse_cell_line_closure=FF:10568-108B1 | |fonse_cell_line_closure=FF:10568-108B1 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesenchymal%2520stem%2520cell%2520line%253aHu5%252fE18.CNhs11718.10568-108B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10568-108B1 | |id=FF:10568-108B1 | ||
|is_a=CL:0000134;;EFO:0002091;;FF:0000003;;FF:0000210 | |is_a=CL:0000134;;EFO:0002091;;FF:0000003;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11718 | |||
|library_id_phase_based=2:CNhs11718 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10568 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10568 | |||
|name=mesenchymal stem cell line:Hu5/E18 | |name=mesenchymal stem cell line:Hu5/E18 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11718,LSID819,release009,COMPLETED | |profile_hcage=CNhs11718,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.2074959492027,0,0,0,0,0.094967872632487,0,0.137629766211885,0.424770799499573,0,0,0,0,0,0,0,0,0,0,0,0.146136648478548,0,0.261668888056971,0,0.520710044464995,0,0,0,0.157328006450816,0,0,0.2094825335139,0,0,0,0,0,0,0,0,0,0,1.00862736060886,0,0.0970378375392516,0.342439123292762,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.245446762050157,0,0,0.157942275505776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.201851683406178,0.073068324239274,0,0,-0.0584468268118252,-0.138129078456595,0.073068324239274,0.146136648478548,0,0.146136648478548,0.157250551481167,0.431476322285934,0,0,0,0,0,0,0.662781422858208,0,0,0,0,0,0,0,0,0,0,0.467192752544855,0.146136648478548,0,0,0.1729240459533,0.417526068681847,0,0,0.146136648478548,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.157250551481167,0,0.146136648478548,0,0,0,0.146136648478548,0,0,0.146136648478548,0,0,0.0952602480071977,0,0.149186038733827,-0.143515142523472,0,0,0.221076344809097,0.146136648478548,0,0,0,0,0,0,0.146136648478548,0,0.214319256340197,0,-0.0504125515893149,0.073068324239274,0,0,0,0.073068324239274,-0.305472230898407,0,0.137378067593408,0.408797089910659,0,0,0,0,0.166728990019603,0,-0.120879483793741,0.39442118266461,0.120827535189955,0.00239537607151301,-0.04680465889238,0,0,0,0.0502147247501086,0.0680085905903305,0,0,0.168123052362002,0.0844004791468875,0,0,-0.391044581551635,0,-0.202377963871259,0.217586287893086,0,0.243957065504556,0,0,0,0,0,0,0,0,0.255285902718873,0,0,-0.0574934668214365,-0.0717026939600959,0.0328371134770104,0,0,0,-0.135402387553516,0,0,-0.0308470326638047,-0.123495328006313,-0.0145124892080036,-0.0320742984078465,0,-0.156253078531365,-0.0073253019987335,-0.378461407285543,0.0357670117087447,-0.147401849371139,-0.189981719549847,0,-0.36074943173957,0.378108306129784,-0.0140926220930022,-0.201851683406178,0,0.0824873928806178,-0.068766631004157,0,0,0,0.079980090665355,0,-0.0976652196296923,0.0896910937509773,-0.113309412685186,0.203895525159346,-0.0927340308029548,-0.0556016453480665,0.0104978869148369,-0.0395325284566706,0.0740637425184987,0,-0.183001649409686,0,0,-0.0344660301095397,-0.0630018520636638,-0.162639849621487,-0.0360203649509283,0,0.139294795674854,-0.0683442610773682,0,0.180183727571414,-0.0266200008581516,0,0,-0.0472770354563186,0,0,0.115703435043264,0,0.146136648478548,-0.0225795689894721,0.0403136651975845,-0.0867189130769965,0,-0.094315944639767,0.0165438891302471,-0.089790131149887,0,-0.366803322410099,-0.0957348312176822,-0.0427882496424193,-0.0949642272346518,0,-0.0752900799785882,-0.0338804460899053,-0.102275661674401,-0.276258156913189,-0.0584468268118252,-0.253330582787704,-0.231239300762299,-0.199945979734187,0.202313279128098,-0.101364614532639,-0.0881268324752877,-0.0406999224218794,0.0896100404203674,-0.424212228902651,-0.0825211978531095,-0.046102196645481,0,-0.014568000556082,0,-0.136370974105885,0,-0.217184707808663,-0.285147848754367,-0.439289374580686,0.173752694227419,0,0.0692506423533885,-0.532845035055101,0,-0.0600412888183415,0,0,0.192072039958123,-0.282704068107184,-0.211650427864589,0.0617218189195161,0,-0.0266272178742762,0,0,-0.10332680964403,0.296024157650705,0.146136648478548,0.402884956904456,0.235920963689388,0.188200930554144,0.0301655750436142,0,0,-0.230708439587326,0,0.342439123292762,-0.350642161099157,0.090959134275954,0.71870193099083,0.00195956123211732,0,-0.108622809454255,0,0,0.299613585022851,0,0.262667716852206,0,0.146136648478548,-0.176812972359549,0,0,0.127642951359437,0,0.0433049849362492,0,-0.0589565109853561,0,0,0,0,0,0.0959472563377326,-0.099547427497575,0,0,0,0.255285902718873,0,0,0.146136648478548,0,0,1.07190959686027,0.448301370821665,-0.019312624660744,0.132268487042453,0,0,0,0,0.0395625001653984,-0.203236562094724,0.146136648478548,0.0142739419809166,0,0,0,0,-0.0861409897892114,0,0,0.073068324239274,0.073068324239274,-0.057730457053664,0.106974095697141,0,0,0,0.862952644571867,0,0,0.255285902718873,0,-0.181884732432483,0,0,0,0,-0.200169417230646,-0.0815818795468414,0,-0.184902613347071,0.0800790395887163,-0.517203368899024,0,0,-0.00606122907101453,0,0.073068324239274,-0.0627895306945001,0,0,0,0,0,0,0,0,0,0.128124610893006,0.073068324239274,0,0.105475884853682,0,0,0.146136648478548,0,0,0,0,0,0.0441731494273081,0.0539125918200379,0.255285902718873,0,0,0,0,0,0,-0.0241060230789031,-0.0514588959138529,0,0,0,0,0,0,0,0,-0.0564340412578432,0,0,0,0,0,0.245446762050157,0,0,0,0.414991898405399,0.507102475706384,0,0,0.137629766211885,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219120037257314,0.205792957940701,0,0,0,0,0,0,0,0.0676058250866716,0,0.342439123292762,0,0,0.141401529009896,0,0,0,0.0413402636893918,0,0.094967872632487,0,0,0.146136648478548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560473017547868,0.174910639543409,0,0,0,0,-0.0251324034303423,0,0,0,0,0,0,0.176155525174172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146136648478548,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.157328006450816,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.116757279010328,0.0662766600500865,0.0274694233979717,0,0,0,0.0732573788769815,0,0,-0.00981434946118043,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146136648478548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261668888056971,0,0,0,0,0,0,0,0,0,0,0,0,0.171219561646381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146136648478548,0.073068324239274,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.146136648478548,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342439123292762,0.543253789217197,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.342439123292762,0,0.414991898405399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255285902718873,0,0,0,0.00956303145500426,0,0,0,0,0,0,0,0,1.00862736060886,0,0,0,0,0.097914573239494,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576628650418919,0,0,0,0,0.429504240327108,0,0,0,0,0,0,0,0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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=12.9305 | |rna_weight_ug=12.9305 | ||
|sample_age=42 | |sample_age=42 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2366 | |sample_cell_catalog=RCB2366 | ||
|sample_cell_line=Hu5/E18 | |sample_cell_line=Hu5/E18 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.51183866191908e-254!GO:0043226;organelle;2.73570716302961e-207!GO:0043229;intracellular organelle;5.28793347212743e-207!GO:0043231;intracellular membrane-bound organelle;7.64525054261794e-197!GO:0043227;membrane-bound organelle;1.802509914785e-196!GO:0005737;cytoplasm;1.64146155473045e-185!GO:0044422;organelle part;4.62620211452525e-163!GO:0044446;intracellular organelle part;8.93015666774166e-162!GO:0044444;cytoplasmic part;9.08258214833065e-131!GO:0032991;macromolecular complex;6.63715472524122e-120!GO:0030529;ribonucleoprotein complex;1.5269032160664e-92!GO:0005634;nucleus;2.33583623962242e-86!GO:0044237;cellular metabolic process;2.93161987414273e-85!GO:0044238;primary metabolic process;1.05913521496996e-84!GO:0005515;protein binding;1.6038134910484e-82!GO:0044428;nuclear part;4.73776531800083e-82!GO:0043170;macromolecule metabolic process;3.12975046461147e-80!GO:0043233;organelle lumen;1.36850607711186e-75!GO:0031974;membrane-enclosed lumen;1.36850607711186e-75!GO:0003723;RNA binding;6.39437512812777e-68!GO:0005739;mitochondrion;2.43448282897983e-66!GO:0043234;protein complex;5.57725752417513e-63!GO:0005840;ribosome;1.48511235684368e-54!GO:0043228;non-membrane-bound organelle;2.9959185876293e-51!GO:0043232;intracellular non-membrane-bound organelle;2.9959185876293e-51!GO:0006396;RNA processing;2.21598644905195e-50!GO:0016043;cellular component organization and biogenesis;2.20059925587811e-49!GO:0003735;structural constituent of ribosome;1.08606811738742e-47!GO:0031981;nuclear lumen;1.32760298745267e-47!GO:0006412;translation;5.37461674717678e-47!GO:0031090;organelle membrane;1.15811785237529e-46!GO:0043283;biopolymer metabolic process;1.83454840619546e-46!GO:0044429;mitochondrial part;4.51034705405076e-45!GO:0019538;protein metabolic process;1.76652812759813e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.76047998275796e-44!GO:0010467;gene expression;1.20069381617735e-41!GO:0016071;mRNA metabolic process;5.94763060899135e-41!GO:0031967;organelle envelope;1.19992280255315e-40!GO:0031975;envelope;2.9070247819993e-40!GO:0033279;ribosomal subunit;4.28929883727204e-40!GO:0044260;cellular macromolecule metabolic process;5.39644152936452e-39!GO:0005829;cytosol;1.12773518589695e-38!GO:0044267;cellular protein metabolic process;1.66175028114507e-38!GO:0008380;RNA splicing;2.16591971867872e-38!GO:0006996;organelle organization and biogenesis;5.89498417969548e-38!GO:0015031;protein transport;7.40974123426207e-38!GO:0006259;DNA metabolic process;9.02598486209213e-38!GO:0033036;macromolecule localization;1.27672148805963e-37!GO:0006397;mRNA processing;7.20575637494462e-37!GO:0009059;macromolecule biosynthetic process;7.54703827177477e-37!GO:0009058;biosynthetic process;8.86133621918313e-37!GO:0044249;cellular biosynthetic process;5.90950642186685e-36!GO:0007049;cell cycle;1.41090892612426e-35!GO:0046907;intracellular transport;1.13757259753696e-34!GO:0008104;protein localization;3.24825002110551e-34!GO:0045184;establishment of protein localization;7.96032331956278e-34!GO:0065003;macromolecular complex assembly;1.52592286259902e-30!GO:0005740;mitochondrial envelope;2.09206866357682e-29!GO:0005654;nucleoplasm;2.9313755523858e-29!GO:0000278;mitotic cell cycle;8.59876410837535e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11295836284316e-28!GO:0005681;spliceosome;2.26681357684535e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.5236649915887e-28!GO:0019866;organelle inner membrane;4.2164065308423e-28!GO:0022607;cellular component assembly;5.46744409046709e-28!GO:0031966;mitochondrial membrane;9.0893103904712e-28!GO:0006886;intracellular protein transport;2.24544145253074e-27!GO:0022402;cell cycle process;6.38515792598468e-27!GO:0005743;mitochondrial inner membrane;9.35931445542898e-26!GO:0006974;response to DNA damage stimulus;2.83244095795166e-24!GO:0003676;nucleic acid binding;2.37904517605146e-23!GO:0006119;oxidative phosphorylation;3.43411016370498e-23!GO:0044455;mitochondrial membrane part;4.12966880354094e-23!GO:0022403;cell cycle phase;5.56062371808016e-23!GO:0044451;nucleoplasm part;5.56062371808016e-23!GO:0000166;nucleotide binding;6.13267554572068e-23!GO:0044445;cytosolic part;6.13267554572068e-23!GO:0005694;chromosome;1.43175027679966e-22!GO:0051641;cellular localization;1.54274689924474e-22!GO:0000087;M phase of mitotic cell cycle;1.87691323173929e-22!GO:0051649;establishment of cellular localization;2.05625246319404e-22!GO:0006457;protein folding;3.05856331646662e-22!GO:0007067;mitosis;4.43448283212984e-22!GO:0006281;DNA repair;1.97096143861765e-21!GO:0015934;large ribosomal subunit;2.9219482587043e-21!GO:0051301;cell division;4.73415272041657e-21!GO:0017111;nucleoside-triphosphatase activity;6.10060521141446e-21!GO:0016462;pyrophosphatase activity;9.78354253755186e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.43949597098915e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.0838991548921e-20!GO:0044427;chromosomal part;4.47186976013254e-20!GO:0015935;small ribosomal subunit;6.56098937580275e-20!GO:0006260;DNA replication;1.32021293854185e-18!GO:0005730;nucleolus;1.87333918181167e-18!GO:0000279;M phase;2.03844009309691e-18!GO:0005746;mitochondrial respiratory chain;2.0696850014594e-18!GO:0031980;mitochondrial lumen;2.255564441596e-18!GO:0005759;mitochondrial matrix;2.255564441596e-18!GO:0012505;endomembrane system;5.63720998687222e-18!GO:0009719;response to endogenous stimulus;2.10592724557729e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.71804498964241e-17!GO:0016070;RNA metabolic process;2.80467549208835e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.34858413148639e-17!GO:0048770;pigment granule;5.16091301279871e-17!GO:0042470;melanosome;5.16091301279871e-17!GO:0022618;protein-RNA complex assembly;1.3674022794502e-16!GO:0005761;mitochondrial ribosome;2.86818415062458e-16!GO:0000313;organellar ribosome;2.86818415062458e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.99721762282297e-16!GO:0003954;NADH dehydrogenase activity;2.99721762282297e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.99721762282297e-16!GO:0032553;ribonucleotide binding;5.23028749226159e-16!GO:0032555;purine ribonucleotide binding;5.23028749226159e-16!GO:0006512;ubiquitin cycle;7.57366168358665e-16!GO:0005783;endoplasmic reticulum;1.18189227844583e-15!GO:0016874;ligase activity;1.40429186630777e-15!GO:0017076;purine nucleotide binding;2.01030598625981e-15!GO:0051186;cofactor metabolic process;5.5395274329465e-15!GO:0051082;unfolded protein binding;5.69305409479941e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.40843921238834e-14!GO:0051276;chromosome organization and biogenesis;2.0792551486509e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.3400105547976e-14!GO:0045271;respiratory chain complex I;2.3400105547976e-14!GO:0005747;mitochondrial respiratory chain complex I;2.3400105547976e-14!GO:0005524;ATP binding;2.84400408000975e-14!GO:0008135;translation factor activity, nucleic acid binding;2.93831187557178e-14!GO:0008134;transcription factor binding;2.93831187557178e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.18358743410504e-14!GO:0042773;ATP synthesis coupled electron transport;3.18358743410504e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.97625159455132e-14!GO:0000375;RNA splicing, via transesterification reactions;3.97625159455132e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.97625159455132e-14!GO:0044265;cellular macromolecule catabolic process;4.55920684855704e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.18322966465508e-14!GO:0044432;endoplasmic reticulum part;7.481037948633e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.50318731896923e-14!GO:0032559;adenyl ribonucleotide binding;8.26280987032784e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.74710743392224e-14!GO:0006605;protein targeting;1.10294548147854e-13!GO:0019941;modification-dependent protein catabolic process;1.4644913784752e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.4644913784752e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.38349503917462e-13!GO:0044257;cellular protein catabolic process;2.4718604469878e-13!GO:0030554;adenyl nucleotide binding;4.5772842636466e-13!GO:0044453;nuclear membrane part;5.6643016989444e-13!GO:0051726;regulation of cell cycle;5.87765563876493e-13!GO:0000074;regulation of progression through cell cycle;6.51154600376882e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.06808521035911e-13!GO:0043285;biopolymer catabolic process;1.07586651739163e-12!GO:0042254;ribosome biogenesis and assembly;1.13867779960015e-12!GO:0031965;nuclear membrane;1.27972309305433e-12!GO:0042623;ATPase activity, coupled;3.22735600640721e-12!GO:0015630;microtubule cytoskeleton;3.73591605441811e-12!GO:0005635;nuclear envelope;4.0838999828439e-12!GO:0009057;macromolecule catabolic process;5.12280059992039e-12!GO:0016887;ATPase activity;5.74175342971017e-12!GO:0005794;Golgi apparatus;9.15123081029611e-12!GO:0016604;nuclear body;1.19686830250658e-11!GO:0044248;cellular catabolic process;1.5105795924108e-11!GO:0006732;coenzyme metabolic process;1.57262763111082e-11!GO:0009055;electron carrier activity;3.04346623233507e-11!GO:0009259;ribonucleotide metabolic process;3.21852166573028e-11!GO:0030163;protein catabolic process;3.34090640316898e-11!GO:0048193;Golgi vesicle transport;3.51517367507335e-11!GO:0043412;biopolymer modification;5.71001445228089e-11!GO:0000775;chromosome, pericentric region;1.04606253679723e-10!GO:0006163;purine nucleotide metabolic process;1.58912670498291e-10!GO:0005793;ER-Golgi intermediate compartment;1.6299670206724e-10!GO:0003743;translation initiation factor activity;1.87083143834491e-10!GO:0016192;vesicle-mediated transport;2.03704254446989e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.84133552997779e-10!GO:0006413;translational initiation;2.92271983537355e-10!GO:0005643;nuclear pore;4.157790259837e-10!GO:0009150;purine ribonucleotide metabolic process;6.06452426816141e-10!GO:0009260;ribonucleotide biosynthetic process;7.34516847446945e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.54272090281237e-10!GO:0006323;DNA packaging;8.20415388530982e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.64639171835894e-10!GO:0043566;structure-specific DNA binding;1.04959259732903e-09!GO:0006164;purine nucleotide biosynthetic process;1.05367273656025e-09!GO:0006464;protein modification process;1.06441169082298e-09!GO:0006446;regulation of translational initiation;1.16385649155853e-09!GO:0065002;intracellular protein transport across a membrane;1.48327916104928e-09!GO:0006261;DNA-dependent DNA replication;1.63087783734862e-09!GO:0003697;single-stranded DNA binding;1.64084856277867e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.9501258039351e-09!GO:0005819;spindle;1.9588888976392e-09!GO:0008639;small protein conjugating enzyme activity;2.22901249960203e-09!GO:0016607;nuclear speck;2.42678815230121e-09!GO:0009141;nucleoside triphosphate metabolic process;2.42994788503089e-09!GO:0005789;endoplasmic reticulum membrane;2.44394073692378e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.86712072562037e-09!GO:0006399;tRNA metabolic process;4.20261350332091e-09!GO:0004842;ubiquitin-protein ligase activity;4.20261350332091e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.24635774512711e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.24635774512711e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.43788033262731e-09!GO:0006913;nucleocytoplasmic transport;4.55618502047801e-09!GO:0008565;protein transporter activity;5.17519282887718e-09!GO:0006461;protein complex assembly;5.46686159868132e-09!GO:0000785;chromatin;5.84532041240685e-09!GO:0051329;interphase of mitotic cell cycle;6.45153446481622e-09!GO:0004386;helicase activity;6.70394515790197e-09!GO:0051325;interphase;7.2271753814649e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.48322280961753e-09!GO:0050657;nucleic acid transport;7.48322280961753e-09!GO:0051236;establishment of RNA localization;7.48322280961753e-09!GO:0050658;RNA transport;7.48322280961753e-09!GO:0003712;transcription cofactor activity;7.55342627198357e-09!GO:0006364;rRNA processing;7.88476875121102e-09!GO:0051169;nuclear transport;8.44557317358596e-09!GO:0006403;RNA localization;8.51874845047511e-09!GO:0019787;small conjugating protein ligase activity;9.24896331995052e-09!GO:0009060;aerobic respiration;1.11295713707596e-08!GO:0046930;pore complex;1.15228541374127e-08!GO:0046034;ATP metabolic process;1.36477939324304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42773288370351e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.08568038694801e-08!GO:0065004;protein-DNA complex assembly;2.11083205706669e-08!GO:0016072;rRNA metabolic process;2.11083205706669e-08!GO:0012501;programmed cell death;2.17114175957474e-08!GO:0015986;ATP synthesis coupled proton transport;2.48357244624578e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.48357244624578e-08!GO:0005768;endosome;2.85424241294507e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.06418703188295e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.06418703188295e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.07418916882214e-08!GO:0043687;post-translational protein modification;3.27327301957375e-08!GO:0006915;apoptosis;4.66318674836704e-08!GO:0006333;chromatin assembly or disassembly;4.78071980375656e-08!GO:0048523;negative regulation of cellular process;5.49082272977273e-08!GO:0045333;cellular respiration;6.30123307324314e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.79937093676204e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.79937093676204e-08!GO:0008026;ATP-dependent helicase activity;7.07971648184982e-08!GO:0050794;regulation of cellular process;8.81281958127126e-08!GO:0019829;cation-transporting ATPase activity;9.68726860150686e-08!GO:0005657;replication fork;9.73061140260407e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.00705596397704e-07!GO:0006366;transcription from RNA polymerase II promoter;1.01572502755902e-07!GO:0000075;cell cycle checkpoint;1.04936237892277e-07!GO:0005667;transcription factor complex;1.38638631942146e-07!GO:0007051;spindle organization and biogenesis;1.60734470818472e-07!GO:0007005;mitochondrion organization and biogenesis;1.842476106785e-07!GO:0017038;protein import;1.92954079359759e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.06238611679158e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.06238611679158e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.06238611679158e-07!GO:0006754;ATP biosynthetic process;2.09145491966429e-07!GO:0006753;nucleoside phosphate metabolic process;2.09145491966429e-07!GO:0051188;cofactor biosynthetic process;2.79888669403034e-07!GO:0016881;acid-amino acid ligase activity;3.23124647875444e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.3274248043786e-07!GO:0009117;nucleotide metabolic process;3.3274248043786e-07!GO:0006099;tricarboxylic acid cycle;3.34744795320819e-07!GO:0046356;acetyl-CoA catabolic process;3.34744795320819e-07!GO:0008219;cell death;3.45503960312439e-07!GO:0016265;death;3.45503960312439e-07!GO:0043038;amino acid activation;4.11935104060578e-07!GO:0006418;tRNA aminoacylation for protein translation;4.11935104060578e-07!GO:0043039;tRNA aminoacylation;4.11935104060578e-07!GO:0051028;mRNA transport;4.31521376663278e-07!GO:0031324;negative regulation of cellular metabolic process;4.33782975148587e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.79211870383404e-07!GO:0007010;cytoskeleton organization and biogenesis;5.45018125023222e-07!GO:0032446;protein modification by small protein conjugation;6.1326702979118e-07!GO:0005813;centrosome;6.28692458226994e-07!GO:0048519;negative regulation of biological process;8.67986698915778e-07!GO:0005815;microtubule organizing center;8.91439751569571e-07!GO:0005788;endoplasmic reticulum lumen;9.6162677052551e-07!GO:0008094;DNA-dependent ATPase activity;9.87683809699139e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.02763484466291e-06!GO:0045259;proton-transporting ATP synthase complex;1.03675095730343e-06!GO:0030120;vesicle coat;1.10343690322907e-06!GO:0030662;coated vesicle membrane;1.10343690322907e-06!GO:0016567;protein ubiquitination;1.26530074398757e-06!GO:0003924;GTPase activity;1.26973889112389e-06!GO:0006084;acetyl-CoA metabolic process;1.26973889112389e-06!GO:0016779;nucleotidyltransferase activity;1.37978031747178e-06!GO:0000245;spliceosome assembly;1.37978031747178e-06!GO:0006334;nucleosome assembly;1.43821589504675e-06!GO:0051187;cofactor catabolic process;1.48957724029065e-06!GO:0016568;chromatin modification;1.60144448786674e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.63401515394459e-06!GO:0048475;coated membrane;2.16452795201926e-06!GO:0030117;membrane coat;2.16452795201926e-06!GO:0008092;cytoskeletal protein binding;2.43933693638041e-06!GO:0009109;coenzyme catabolic process;3.06427540306102e-06!GO:0009108;coenzyme biosynthetic process;3.58152974673311e-06!GO:0031497;chromatin assembly;3.62693395596891e-06!GO:0016491;oxidoreductase activity;3.81419889875404e-06!GO:0006752;group transfer coenzyme metabolic process;3.93490584286155e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.11507790993486e-06!GO:0004298;threonine endopeptidase activity;4.36780562372431e-06!GO:0009892;negative regulation of metabolic process;4.71679317875548e-06!GO:0005762;mitochondrial large ribosomal subunit;4.97931526564986e-06!GO:0000315;organellar large ribosomal subunit;4.97931526564986e-06!GO:0000151;ubiquitin ligase complex;5.2414460935449e-06!GO:0043623;cellular protein complex assembly;5.2414460935449e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.51058336152899e-06!GO:0051789;response to protein stimulus;5.9265561036941e-06!GO:0006986;response to unfolded protein;5.9265561036941e-06!GO:0050789;regulation of biological process;6.15572655245791e-06!GO:0009056;catabolic process;6.91266332793299e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.01259247213889e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.79397355896503e-06!GO:0016859;cis-trans isomerase activity;7.81209464716794e-06!GO:0000776;kinetochore;7.88628196619886e-06!GO:0045786;negative regulation of progression through cell cycle;8.9258757998196e-06!GO:0051427;hormone receptor binding;9.13008355350104e-06!GO:0006613;cotranslational protein targeting to membrane;1.02076782756428e-05!GO:0031252;leading edge;1.09541463601285e-05!GO:0016564;transcription repressor activity;1.61313702928435e-05!GO:0016787;hydrolase activity;1.70841342930629e-05!GO:0016740;transferase activity;2.00358190189455e-05!GO:0035257;nuclear hormone receptor binding;2.09876998235154e-05!GO:0044431;Golgi apparatus part;2.21821656405754e-05!GO:0019899;enzyme binding;2.28396037628463e-05!GO:0003724;RNA helicase activity;2.58714975610775e-05!GO:0003899;DNA-directed RNA polymerase activity;2.76477485458999e-05!GO:0051246;regulation of protein metabolic process;3.00910307310193e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.0222540041415e-05!GO:0044440;endosomal part;3.32108507976019e-05!GO:0010008;endosome membrane;3.32108507976019e-05!GO:0016853;isomerase activity;3.55143093802759e-05!GO:0006302;double-strand break repair;3.59080472235453e-05!GO:0000314;organellar small ribosomal subunit;4.00166667288805e-05!GO:0005763;mitochondrial small ribosomal subunit;4.00166667288805e-05!GO:0007059;chromosome segregation;4.24927899649949e-05!GO:0030867;rough endoplasmic reticulum membrane;4.60319361061417e-05!GO:0005798;Golgi-associated vesicle;4.67009491327354e-05!GO:0016363;nuclear matrix;4.72310056481863e-05!GO:0003714;transcription corepressor activity;4.76039174746777e-05!GO:0006091;generation of precursor metabolites and energy;4.84155407566188e-05!GO:0005874;microtubule;5.23221491371814e-05!GO:0003684;damaged DNA binding;5.72208291777162e-05!GO:0005769;early endosome;6.56760217128978e-05!GO:0006793;phosphorus metabolic process;7.09719979438003e-05!GO:0006796;phosphate metabolic process;7.09719979438003e-05!GO:0043067;regulation of programmed cell death;7.45886123221128e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.56242276151447e-05!GO:0003690;double-stranded DNA binding;7.98597321251614e-05!GO:0042981;regulation of apoptosis;8.73783142836046e-05!GO:0005525;GTP binding;8.92407402102151e-05!GO:0016563;transcription activator activity;9.49859280486693e-05!GO:0031988;membrane-bound vesicle;9.68931537423079e-05!GO:0016481;negative regulation of transcription;0.00011049952167784!GO:0051170;nuclear import;0.000126226326207261!GO:0007088;regulation of mitosis;0.000128224291467526!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000136011568330806!GO:0043021;ribonucleoprotein binding;0.000140668809700974!GO:0008022;protein C-terminus binding;0.000141479266752444!GO:0009165;nucleotide biosynthetic process;0.000145929838746801!GO:0045454;cell redox homeostasis;0.000153945286071866!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000154669526465597!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000157613961366297!GO:0003729;mRNA binding;0.00016312112829735!GO:0006606;protein import into nucleus;0.000165002787309049!GO:0007093;mitotic cell cycle checkpoint;0.000167221581892984!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000174163795336282!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000188013922253376!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000207031365705224!GO:0006839;mitochondrial transport;0.00021883121272098!GO:0006612;protein targeting to membrane;0.000253742218494842!GO:0003682;chromatin binding;0.000263334064859551!GO:0000082;G1/S transition of mitotic cell cycle;0.000264534854105845!GO:0003713;transcription coactivator activity;0.000265522339303555!GO:0019222;regulation of metabolic process;0.000274665627765228!GO:0051168;nuclear export;0.000314038315559451!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000321294127732542!GO:0043681;protein import into mitochondrion;0.00034007708711009!GO:0016310;phosphorylation;0.000345421513851081!GO:0006916;anti-apoptosis;0.000360221581640681!GO:0051052;regulation of DNA metabolic process;0.000371997391698377!GO:0031968;organelle outer membrane;0.000375186144877553!GO:0006310;DNA recombination;0.000380850643065816!GO:0008361;regulation of cell size;0.000387070523049573!GO:0031982;vesicle;0.000388265848077737!GO:0031410;cytoplasmic vesicle;0.000388660336989669!GO:0016049;cell growth;0.00040217590114137!GO:0005885;Arp2/3 protein complex;0.000404897294326762!GO:0008186;RNA-dependent ATPase activity;0.000435251234032882!GO:0043069;negative regulation of programmed cell death;0.000443205455899099!GO:0005770;late endosome;0.000486367281462536!GO:0031072;heat shock protein binding;0.000493238686807934!GO:0000139;Golgi membrane;0.000502983560350672!GO:0042802;identical protein binding;0.000524509775909202!GO:0005856;cytoskeleton;0.000528277723156098!GO:0033116;ER-Golgi intermediate compartment membrane;0.000531460327509774!GO:0007052;mitotic spindle organization and biogenesis;0.000535678233715416!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000562247208627712!GO:0019867;outer membrane;0.000574878994200994!GO:0005905;coated pit;0.000591958815876211!GO:0008654;phospholipid biosynthetic process;0.000648511795156587!GO:0005048;signal sequence binding;0.000660340667524019!GO:0030036;actin cytoskeleton organization and biogenesis;0.000696036553564587!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000720839235344915!GO:0043284;biopolymer biosynthetic process;0.000735117888273197!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000759312730933578!GO:0043596;nuclear replication fork;0.000774580120273786!GO:0004576;oligosaccharyl transferase activity;0.000778607949577759!GO:0006383;transcription from RNA polymerase III promoter;0.0007916057203837!GO:0005791;rough endoplasmic reticulum;0.000801590597575185!GO:0030663;COPI coated vesicle membrane;0.000801590597575185!GO:0030126;COPI vesicle coat;0.000801590597575185!GO:0001558;regulation of cell growth;0.000814543506784954!GO:0032561;guanyl ribonucleotide binding;0.000822835999448593!GO:0019001;guanyl nucleotide binding;0.000822835999448593!GO:0008250;oligosaccharyl transferase complex;0.000835126739946561!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000852531327674179!GO:0043066;negative regulation of apoptosis;0.000853778456196267!GO:0003678;DNA helicase activity;0.000898212684885503!GO:0065009;regulation of a molecular function;0.000920318018894238!GO:0051252;regulation of RNA metabolic process;0.000949632579971708!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00101898418327126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00101898418327126!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00101898418327126!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108523855024904!GO:0000059;protein import into nucleus, docking;0.00111195077314269!GO:0001952;regulation of cell-matrix adhesion;0.00112517423556766!GO:0006414;translational elongation;0.00115000931634331!GO:0019843;rRNA binding;0.00116022143311997!GO:0004004;ATP-dependent RNA helicase activity;0.00116022143311997!GO:0008047;enzyme activator activity;0.00119614946326383!GO:0006626;protein targeting to mitochondrion;0.00123193994356508!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00126947012873006!GO:0005773;vacuole;0.00128738318340357!GO:0051920;peroxiredoxin activity;0.00136956661342302!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00137697377024929!GO:0005876;spindle microtubule;0.00140333829778816!GO:0000228;nuclear chromosome;0.00148698191328052!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00150286530357985!GO:0006270;DNA replication initiation;0.00152914315510091!GO:0007017;microtubule-based process;0.00152914315510091!GO:0018196;peptidyl-asparagine modification;0.00152914315510091!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00152914315510091!GO:0005741;mitochondrial outer membrane;0.00156521554836696!GO:0046474;glycerophospholipid biosynthetic process;0.00160940693972213!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00163828948476597!GO:0015399;primary active transmembrane transporter activity;0.00163828948476597!GO:0005684;U2-dependent spliceosome;0.00173950592438956!GO:0030029;actin filament-based process;0.00175742426959701!GO:0007006;mitochondrial membrane organization and biogenesis;0.00176610567966223!GO:0003779;actin binding;0.00189670928916708!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00197393853718872!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00197393853718872!GO:0022890;inorganic cation transmembrane transporter activity;0.00198715977801478!GO:0006284;base-excision repair;0.00201548815234027!GO:0030176;integral to endoplasmic reticulum membrane;0.00205525392889501!GO:0030137;COPI-coated vesicle;0.00205678513161032!GO:0031124;mRNA 3'-end processing;0.00223054862810701!GO:0005637;nuclear inner membrane;0.0022335489889296!GO:0048500;signal recognition particle;0.00234478677506655!GO:0008033;tRNA processing;0.00247810216350154!GO:0006950;response to stress;0.00249624773105437!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00251245326226572!GO:0008168;methyltransferase activity;0.00253123379780755!GO:0030132;clathrin coat of coated pit;0.00266384913992217!GO:0001726;ruffle;0.00271965942203137!GO:0015992;proton transport;0.00279904483164595!GO:0048522;positive regulation of cellular process;0.00281251646630368!GO:0032508;DNA duplex unwinding;0.00300855229271615!GO:0032392;DNA geometric change;0.00300855229271615!GO:0065007;biological regulation;0.0030628181914682!GO:0043601;nuclear replisome;0.00307401497332481!GO:0030894;replisome;0.00307401497332481!GO:0016741;transferase activity, transferring one-carbon groups;0.00310564528712304!GO:0006275;regulation of DNA replication;0.00310564528712304!GO:0006818;hydrogen transport;0.00310739521052913!GO:0008312;7S RNA binding;0.00314082483243639!GO:0055003;cardiac myofibril assembly;0.00314082483243639!GO:0055013;cardiac muscle cell development;0.00314082483243639!GO:0008180;signalosome;0.00325858442848777!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00331834337992653!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00335973737533488!GO:0015002;heme-copper terminal oxidase activity;0.00335973737533488!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00335973737533488!GO:0004129;cytochrome-c oxidase activity;0.00335973737533488!GO:0003711;transcription elongation regulator activity;0.00340709872728146!GO:0000792;heterochromatin;0.00378047502161692!GO:0000070;mitotic sister chromatid segregation;0.00387509959760544!GO:0046483;heterocycle metabolic process;0.00394444339745919!GO:0000786;nucleosome;0.00401314576056188!GO:0008139;nuclear localization sequence binding;0.00404174237782703!GO:0051087;chaperone binding;0.00404174237782703!GO:0030521;androgen receptor signaling pathway;0.00411711303294908!GO:0019206;nucleoside kinase activity;0.00414770132751168!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00423214179303253!GO:0051540;metal cluster binding;0.00423214179303253!GO:0051536;iron-sulfur cluster binding;0.00423214179303253!GO:0030133;transport vesicle;0.00426006692682504!GO:0006268;DNA unwinding during replication;0.00428937271960029!GO:0000922;spindle pole;0.00431569744142409!GO:0035258;steroid hormone receptor binding;0.00432910925819369!GO:0000819;sister chromatid segregation;0.00464140152907859!GO:0017166;vinculin binding;0.00488676973069018!GO:0046489;phosphoinositide biosynthetic process;0.00509188634234207!GO:0044452;nucleolar part;0.00510824580728589!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00527320763972789!GO:0045047;protein targeting to ER;0.00527320763972789!GO:0000323;lytic vacuole;0.00529079686440702!GO:0005764;lysosome;0.00529079686440702!GO:0003746;translation elongation factor activity;0.00560948073351785!GO:0006891;intra-Golgi vesicle-mediated transport;0.00571454237908912!GO:0007034;vacuolar transport;0.00571454237908912!GO:0000910;cytokinesis;0.00588719500709603!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00592975661577165!GO:0005096;GTPase activator activity;0.00596096278042726!GO:0030027;lamellipodium;0.00600212618580255!GO:0045892;negative regulation of transcription, DNA-dependent;0.00602990898807449!GO:0015631;tubulin binding;0.00603070255003456!GO:0006595;polyamine metabolic process;0.00606392868744888!GO:0005869;dynactin complex;0.00612005536369353!GO:0007346;regulation of progression through mitotic cell cycle;0.00615923824233328!GO:0040008;regulation of growth;0.00615923824233328!GO:0031323;regulation of cellular metabolic process;0.00618082340732292!GO:0006352;transcription initiation;0.00630170624497515!GO:0006289;nucleotide-excision repair;0.00647555705080626!GO:0031901;early endosome membrane;0.00675089911543686!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00680774522996308!GO:0007050;cell cycle arrest;0.00689606760252957!GO:0031570;DNA integrity checkpoint;0.00698196965103898!GO:0016044;membrane organization and biogenesis;0.00723057390438479!GO:0008286;insulin receptor signaling pathway;0.00737276335750123!GO:0030880;RNA polymerase complex;0.00755456721030458!GO:0048487;beta-tubulin binding;0.0075699951315805!GO:0016126;sterol biosynthetic process;0.00784615737556339!GO:0009116;nucleoside metabolic process;0.00822771830460176!GO:0016272;prefoldin complex;0.00822786228400059!GO:0000725;recombinational repair;0.00826163840075764!GO:0000724;double-strand break repair via homologous recombination;0.00826163840075764!GO:0042770;DNA damage response, signal transduction;0.00827516133139079!GO:0006220;pyrimidine nucleotide metabolic process;0.00833109304979521!GO:0048471;perinuclear region of cytoplasm;0.00843306359738993!GO:0006402;mRNA catabolic process;0.00854853013485761!GO:0044262;cellular carbohydrate metabolic process;0.00854853013485761!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00886044352036784!GO:0045792;negative regulation of cell size;0.00939499589282607!GO:0009112;nucleobase metabolic process;0.00968392498099553!GO:0016408;C-acyltransferase activity;0.00994078800408139!GO:0043488;regulation of mRNA stability;0.0100973426211305!GO:0043487;regulation of RNA stability;0.0100973426211305!GO:0000339;RNA cap binding;0.0102242371789741!GO:0004527;exonuclease activity;0.0102573406233846!GO:0030118;clathrin coat;0.0106350287190985!GO:0042393;histone binding;0.0106888892261588!GO:0050790;regulation of catalytic activity;0.0108747635434116!GO:0051287;NAD binding;0.0109101632173921!GO:0006405;RNA export from nucleus;0.0109101632173921!GO:0006378;mRNA polyadenylation;0.0109510339682407!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0109581606527003!GO:0030308;negative regulation of cell growth;0.0109581606527003!GO:0051539;4 iron, 4 sulfur cluster binding;0.010992568022188!GO:0005832;chaperonin-containing T-complex;0.0115425989799261!GO:0005862;muscle thin filament tropomyosin;0.0118350588113513!GO:0006509;membrane protein ectodomain proteolysis;0.0120431930973794!GO:0033619;membrane protein proteolysis;0.0120431930973794!GO:0033673;negative regulation of kinase activity;0.0123120675495665!GO:0006469;negative regulation of protein kinase activity;0.0123120675495665!GO:0030658;transport vesicle membrane;0.0126253412680473!GO:0043492;ATPase activity, coupled to movement of substances;0.01281432326162!GO:0008632;apoptotic program;0.0129700502326637!GO:0006611;protein export from nucleus;0.013440261866607!GO:0022408;negative regulation of cell-cell adhesion;0.0134625592139115!GO:0006695;cholesterol biosynthetic process;0.0136553471341652!GO:0051348;negative regulation of transferase activity;0.014239048180952!GO:0006338;chromatin remodeling;0.014490349897168!GO:0016584;nucleosome positioning;0.0145262881720051!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.015064716432734!GO:0030032;lamellipodium biogenesis;0.0150966015732787!GO:0016197;endosome transport;0.0151280364366772!GO:0006144;purine base metabolic process;0.0151552891823173!GO:0031123;RNA 3'-end processing;0.0153152690050239!GO:0004003;ATP-dependent DNA helicase activity;0.0153944474826119!GO:0006007;glucose catabolic process;0.0154357810945124!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0156266142673269!GO:0000428;DNA-directed RNA polymerase complex;0.0156266142673269!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0163308718817517!GO:0032259;methylation;0.0166895484282553!GO:0015629;actin cytoskeleton;0.0170497542363584!GO:0006740;NADPH regeneration;0.0175042968517002!GO:0006098;pentose-phosphate shunt;0.0175042968517002!GO:0007041;lysosomal transport;0.0179964195190758!GO:0005663;DNA replication factor C complex;0.0180981759675235!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0185993626263233!GO:0007264;small GTPase mediated signal transduction;0.018603501443547!GO:0006401;RNA catabolic process;0.0193329847153752!GO:0006354;RNA elongation;0.0195297389520224!GO:0006376;mRNA splice site selection;0.0202603122607012!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0202603122607012!GO:0000287;magnesium ion binding;0.0202721736601935!GO:0043022;ribosome binding;0.0203655550378862!GO:0000084;S phase of mitotic cell cycle;0.0205444852927164!GO:0001725;stress fiber;0.0212556698470232!GO:0032432;actin filament bundle;0.0212556698470232!GO:0000209;protein polyubiquitination;0.0212935860200716!GO:0031529;ruffle organization and biogenesis;0.0212935860200716!GO:0030496;midbody;0.021711578446798!GO:0001953;negative regulation of cell-matrix adhesion;0.021711578446798!GO:0006350;transcription;0.0219364114926682!GO:0050681;androgen receptor binding;0.0222176649156093!GO:0000178;exosome (RNase complex);0.0226384208937396!GO:0046966;thyroid hormone receptor binding;0.0226653663089712!GO:0000077;DNA damage checkpoint;0.0227506550405978!GO:0045941;positive regulation of transcription;0.0228407397962425!GO:0043433;negative regulation of transcription factor activity;0.022958673807655!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230036470051649!GO:0046467;membrane lipid biosynthetic process;0.023091912737104!GO:0007021;tubulin folding;0.0233670805846545!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0233670805846545!GO:0008601;protein phosphatase type 2A regulator activity;0.0236900548396957!GO:0005652;nuclear lamina;0.0242401292404066!GO:0031589;cell-substrate adhesion;0.0244750070784293!GO:0007243;protein kinase cascade;0.0249589018390148!GO:0043624;cellular protein complex disassembly;0.0251284388805213!GO:0045936;negative regulation of phosphate metabolic process;0.0252234813331884!GO:0043414;biopolymer methylation;0.0256276357609608!GO:0030119;AP-type membrane coat adaptor complex;0.0257272006651627!GO:0007160;cell-matrix adhesion;0.0258360286912342!GO:0030134;ER to Golgi transport vesicle;0.0260310299868384!GO:0044454;nuclear chromosome part;0.0260379195128605!GO:0005811;lipid particle;0.0261199713558059!GO:0032200;telomere organization and biogenesis;0.0264412002245169!GO:0000723;telomere maintenance;0.0264412002245169!GO:0045926;negative regulation of growth;0.0265901395513052!GO:0040029;regulation of gene expression, epigenetic;0.0265901395513052!GO:0033559;unsaturated fatty acid metabolic process;0.0265901395513052!GO:0006636;unsaturated fatty acid biosynthetic process;0.0265901395513052!GO:0051053;negative regulation of DNA metabolic process;0.0266942973961641!GO:0032984;macromolecular complex disassembly;0.0268661219329276!GO:0045098;type III intermediate filament;0.0273470887735857!GO:0000152;nuclear ubiquitin ligase complex;0.0274342381368975!GO:0003923;GPI-anchor transamidase activity;0.0276012451141061!GO:0016255;attachment of GPI anchor to protein;0.0276012451141061!GO:0042765;GPI-anchor transamidase complex;0.0276012451141061!GO:0030660;Golgi-associated vesicle membrane;0.0278118267825016!GO:0006497;protein amino acid lipidation;0.0283657475364548!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0286655403363957!GO:0005784;translocon complex;0.0289797566955494!GO:0030127;COPII vesicle coat;0.029377041992853!GO:0012507;ER to Golgi transport vesicle membrane;0.029377041992853!GO:0003756;protein disulfide isomerase activity;0.0297081466265854!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0297081466265854!GO:0009262;deoxyribonucleotide metabolic process;0.0302287331461372!GO:0000159;protein phosphatase type 2A complex;0.0307144081763978!GO:0006506;GPI anchor biosynthetic process;0.0311900264363198!GO:0016251;general RNA polymerase II transcription factor activity;0.0315280811604705!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0317300643069044!GO:0031577;spindle checkpoint;0.031805825474937!GO:0043130;ubiquitin binding;0.031805825474937!GO:0032182;small conjugating protein binding;0.031805825474937!GO:0008287;protein serine/threonine phosphatase complex;0.0322949643292273!GO:0006266;DNA ligation;0.03238568241755!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0324065844515921!GO:0008243;plasminogen activator activity;0.0328549243403121!GO:0008538;proteasome activator activity;0.0338414372217452!GO:0051059;NF-kappaB binding;0.0340288880931717!GO:0051320;S phase;0.0342960115956922!GO:0004518;nuclease activity;0.03458061194273!GO:0019752;carboxylic acid metabolic process;0.0353465561473418!GO:0014706;striated muscle development;0.0358545232682509!GO:0031371;ubiquitin conjugating enzyme complex;0.035948684705202!GO:0005758;mitochondrial intermembrane space;0.0361794595658513!GO:0008629;induction of apoptosis by intracellular signals;0.0363407614795169!GO:0000781;chromosome, telomeric region;0.0366908183720439!GO:0030508;thiol-disulfide exchange intermediate activity;0.0366908183720439!GO:0006505;GPI anchor metabolic process;0.0370801721211961!GO:0005680;anaphase-promoting complex;0.0376378780842569!GO:0016791;phosphoric monoester hydrolase activity;0.0377261872739756!GO:0004523;ribonuclease H activity;0.0377261872739756!GO:0009303;rRNA transcription;0.0380366498559849!GO:0044430;cytoskeletal part;0.0383005981541257!GO:0004674;protein serine/threonine kinase activity;0.0385858114472396!GO:0051098;regulation of binding;0.0390143969086072!GO:0030131;clathrin adaptor complex;0.0390610805586914!GO:0006082;organic acid metabolic process;0.0392926484470603!GO:0030911;TPR domain binding;0.0393187719973133!GO:0047485;protein N-terminus binding;0.0395503817756732!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0395503817756732!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0401553097815702!GO:0000726;non-recombinational repair;0.0405535445955103!GO:0043241;protein complex disassembly;0.0420789145686662!GO:0051128;regulation of cellular component organization and biogenesis;0.0422455410776813!GO:0006650;glycerophospholipid metabolic process;0.0422455410776813!GO:0007517;muscle development;0.0427404297207805!GO:0005669;transcription factor TFIID complex;0.0434837710837667!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.043686980362418!GO:0045045;secretory pathway;0.0437504746659429!GO:0030125;clathrin vesicle coat;0.0439120749448279!GO:0030665;clathrin coated vesicle membrane;0.0439120749448279!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0439309942824425!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0442995942717258!GO:0043065;positive regulation of apoptosis;0.0443192592985016!GO:0000793;condensed chromosome;0.0448290165198613!GO:0031625;ubiquitin protein ligase binding;0.0448820099170017!GO:0045893;positive regulation of transcription, DNA-dependent;0.0449108084915484!GO:0044433;cytoplasmic vesicle part;0.0449648411423212!GO:0046128;purine ribonucleoside metabolic process;0.0451773496489877!GO:0042278;purine nucleoside metabolic process;0.0451773496489877!GO:0000086;G2/M transition of mitotic cell cycle;0.0451773496489877!GO:0000049;tRNA binding;0.0451773496489877!GO:0030659;cytoplasmic vesicle membrane;0.0453571280450658!GO:0051318;G1 phase;0.0457863554234674!GO:0031543;peptidyl-proline dioxygenase activity;0.045921095672362!GO:0007162;negative regulation of cell adhesion;0.045921095672362!GO:0003988;acetyl-CoA C-acyltransferase activity;0.045921095672362!GO:0005521;lamin binding;0.0465877728398076!GO:0030518;steroid hormone receptor signaling pathway;0.0468500799840749!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0474711589426113!GO:0031902;late endosome membrane;0.0484289626165493!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0491551213461402!GO:0006541;glutamine metabolic process;0.0494633646364134!GO:0008408;3'-5' exonuclease activity;0.0494633646364134!GO:0007040;lysosome organization and biogenesis;0.0495428500574384!GO:0006221;pyrimidine nucleotide biosynthetic process;0.049551760056577!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0499098032040905 | |||
|sample_id=10568 | |sample_id=10568 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=POU3F1..4:2.93430932523;NKX2-2,8:2.77606262968;AIRE:1.9667992169;UFEwm:1.87935231728;ALX4:1.86161740761;EVI1:1.64707199637;NR3C1:1.51360022332;FOXL1:1.50204136142;FOXD3:1.3639373055;E2F1..5:1.35598756126;RXR{A,B,G}:1.35430374314;T:1.3455089674;GCM1,2:1.3136147292;HSF1,2:1.30359662458;HMGA1,2:1.26307137487;NKX3-1:1.25935636358;FOXM1:1.14624683569;MYB:1.13069478032;ZNF384:1.12577188152;IKZF2:1.11371730798;GZF1:1.08505931199;TEAD1:1.0375812066;TFDP1:0.99283353204;RXRA_VDR{dimer}:0.992607731585;TFAP4:0.978128906066;HES1:0.969380598547;PAX4:0.948165678197;ZIC1..3:0.935893468507;SRF:0.897336413578;PPARG:0.878495944781;POU1F1:0.834165339662;HOX{A4,D4}:0.787454192117;TLX1..3_NFIC{dimer}:0.761193861105;MYOD1:0.714751486574;GFI1:0.690555029209;YY1:0.682550368772;NFY{A,B,C}:0.665182654505;ARID5B:0.663293898922;PAX8:0.66105589257;GFI1B:0.658709712041;NFE2L1:0.633215287884;CDC5L:0.588376285196;NR5A1,2:0.579788998679;PAX6:0.557535318737;MYBL2:0.54298047571;HAND1,2:0.53778367894;SMAD1..7,9:0.488553936655;TP53:0.486075939662;EN1,2:0.473447587809;ZBTB16:0.466900791571;PITX1..3:0.464504238503;AR:0.459417726207;KLF4:0.455574040213;GATA4:0.45150691643;IKZF1:0.450595183076;PAX1,9:0.425973726895;MTE{core}:0.4113916654;MEF2{A,B,C,D}:0.408348292266;PAX3,7:0.40208557553;LHX3,4:0.372189814649;ZNF143:0.36741559147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.366476656843;NFIX:0.316958258729;LEF1_TCF7_TCF7L1,2:0.309526655775;TOPORS:0.288920295229;GTF2A1,2:0.275171540504;NHLH1,2:0.260755003513;BACH2:0.248962695481;NKX3-2:0.229734615543;TAL1_TCF{3,4,12}:0.223629269294;NR6A1:0.216212810367;HOXA9_MEIS1:0.211744208022;TGIF1:0.176749275852;TBX4,5:0.169148846189;SPZ1:0.149291671197;ESR1:0.140345583605;NR1H4:0.134424807452;MAZ:0.123290413434;FOXA2:0.122415983096;ZNF148:0.114714642342;ZNF238:0.114081385083;TBP:0.11169641059;GLI1..3:0.106506164483;DBP:0.0972369575598;FOXO1,3,4:0.0854451559671;CDX1,2,4:0.0714805794241;EBF1:0.0425052041099;ZBTB6:0.0412114519196;EP300:0.0336661438559;HOX{A5,B5}:0.0273163681739;NANOG{mouse}:0.0255064652086;TFCP2:0.00893494963255;LMO2:0.00846268258905;RUNX1..3:-0.0131138094253;DMAP1_NCOR{1,2}_SMARC:-0.0350592631355;SOX2:-0.0539835495998;NRF1:-0.0557687286615;FOS_FOS{B,L1}_JUN{B,D}:-0.076714156933;HIC1:-0.0858014703068;SOX{8,9,10}:-0.116084455881;NFE2L2:-0.125731134886;POU6F1:-0.127267802718;BPTF:-0.143523784301;FOXP3:-0.148410059921;SOX5:-0.153021287447;ONECUT1,2:-0.169902698907;NFE2:-0.177031260354;STAT5{A,B}:-0.177859823989;ELK1,4_GABP{A,B1}:-0.188517180099;HMX1:-0.190193008456;PRRX1,2:-0.206836652029;NFIL3:-0.212641692588;OCT4_SOX2{dimer}:-0.213001033892;SOX17:-0.223012613404;MTF1:-0.223244793782;ZFP161:-0.229291801668;ALX1:-0.245453338856;MZF1:-0.247881881482;POU2F1..3:-0.253887888394;PDX1:-0.271111531714;RFX1:-0.272783043778;HNF4A_NR2F1,2:-0.282213581715;FOXP1:-0.282302730136;HNF1A:-0.289978873965;GTF2I:-0.317624870597;FOSL2:-0.321273701017;TFAP2{A,C}:-0.321369850505;CUX2:-0.3255797565;NFATC1..3:-0.342372652091;CREB1:-0.370508583621;IRF1,2:-0.371635887882;NKX2-1,4:-0.381503138684;STAT2,4,6:-0.393754471587;ESRRA:-0.408263666446;ATF6:-0.408905265953;HLF:-0.418679583746;TLX2:-0.425198885843;ADNP_IRX_SIX_ZHX:-0.440721518919;PBX1:-0.463160060733;IRF7:-0.468108108306;NKX6-1,2:-0.479589180465;MED-1{core}:-0.485026148046;RBPJ:-0.516104685558;NKX2-3_NKX2-5:-0.529195471797;TFAP2B:-0.529765285952;JUN:-0.54186015866;FOX{D1,D2}:-0.543948687536;ATF5_CREB3:-0.548595346659;RREB1:-0.570415818455;SPIB:-0.577162885074;XCPE1{core}:-0.582336541809;NFKB1_REL_RELA:-0.583335999997;RFX2..5_RFXANK_RFXAP:-0.590122889189;SPI1:-0.599208575051;AHR_ARNT_ARNT2:-0.611535360237;SNAI1..3:-0.614257495431;TEF:-0.654228961989;PAX5:-0.672844405863;MYFfamily:-0.675419014245;ELF1,2,4:-0.67804375724;FOXQ1:-0.680673440357;PRDM1:-0.70189177585;HOX{A6,A7,B6,B7}:-0.720221000729;HIF1A:-0.720442669854;REST:-0.735342322799;FOXN1:-0.736111998717;bHLH_family:-0.740773601234;GATA6:-0.760946243196;ETS1,2:-0.785804410902;FOX{I1,J2}:-0.798557215169;BREu{core}:-0.801945065868;SP1:-0.811394919032;RORA:-0.822885959419;CEBPA,B_DDIT3:-0.838756235061;SREBF1,2:-0.841385046655;ATF4:-0.858286190443;XBP1:-0.861479908903;PATZ1:-0.876736339222;ZEB1:-0.960750920188;HBP1_HMGB_SSRP1_UBTF:-0.985504752625;POU5F1:-1.0096529039;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03803181779;VSX1,2:-1.07736986397;EGR1..3:-1.08104646118;ATF2:-1.18089888002;ZNF423:-1.18172933215;NANOG:-1.32913164119;STAT1,3:-1.36872504407;MAFB:-1.39634511205;PAX2:-1.42673022857;FOX{F1,F2,J1}:-1.68125969782;CRX:-1.73289097516 | |top_motifs=POU3F1..4:2.93430932523;NKX2-2,8:2.77606262968;AIRE:1.9667992169;UFEwm:1.87935231728;ALX4:1.86161740761;EVI1:1.64707199637;NR3C1:1.51360022332;FOXL1:1.50204136142;FOXD3:1.3639373055;E2F1..5:1.35598756126;RXR{A,B,G}:1.35430374314;T:1.3455089674;GCM1,2:1.3136147292;HSF1,2:1.30359662458;HMGA1,2:1.26307137487;NKX3-1:1.25935636358;FOXM1:1.14624683569;MYB:1.13069478032;ZNF384:1.12577188152;IKZF2:1.11371730798;GZF1:1.08505931199;TEAD1:1.0375812066;TFDP1:0.99283353204;RXRA_VDR{dimer}:0.992607731585;TFAP4:0.978128906066;HES1:0.969380598547;PAX4:0.948165678197;ZIC1..3:0.935893468507;SRF:0.897336413578;PPARG:0.878495944781;POU1F1:0.834165339662;HOX{A4,D4}:0.787454192117;TLX1..3_NFIC{dimer}:0.761193861105;MYOD1:0.714751486574;GFI1:0.690555029209;YY1:0.682550368772;NFY{A,B,C}:0.665182654505;ARID5B:0.663293898922;PAX8:0.66105589257;GFI1B:0.658709712041;NFE2L1:0.633215287884;CDC5L:0.588376285196;NR5A1,2:0.579788998679;PAX6:0.557535318737;MYBL2:0.54298047571;HAND1,2:0.53778367894;SMAD1..7,9:0.488553936655;TP53:0.486075939662;EN1,2:0.473447587809;ZBTB16:0.466900791571;PITX1..3:0.464504238503;AR:0.459417726207;KLF4:0.455574040213;GATA4:0.45150691643;IKZF1:0.450595183076;PAX1,9:0.425973726895;MTE{core}:0.4113916654;MEF2{A,B,C,D}:0.408348292266;PAX3,7:0.40208557553;LHX3,4:0.372189814649;ZNF143:0.36741559147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.366476656843;NFIX:0.316958258729;LEF1_TCF7_TCF7L1,2:0.309526655775;TOPORS:0.288920295229;GTF2A1,2:0.275171540504;NHLH1,2:0.260755003513;BACH2:0.248962695481;NKX3-2:0.229734615543;TAL1_TCF{3,4,12}:0.223629269294;NR6A1:0.216212810367;HOXA9_MEIS1:0.211744208022;TGIF1:0.176749275852;TBX4,5:0.169148846189;SPZ1:0.149291671197;ESR1:0.140345583605;NR1H4:0.134424807452;MAZ:0.123290413434;FOXA2:0.122415983096;ZNF148:0.114714642342;ZNF238:0.114081385083;TBP:0.11169641059;GLI1..3:0.106506164483;DBP:0.0972369575598;FOXO1,3,4:0.0854451559671;CDX1,2,4:0.0714805794241;EBF1:0.0425052041099;ZBTB6:0.0412114519196;EP300:0.0336661438559;HOX{A5,B5}:0.0273163681739;NANOG{mouse}:0.0255064652086;TFCP2:0.00893494963255;LMO2:0.00846268258905;RUNX1..3:-0.0131138094253;DMAP1_NCOR{1,2}_SMARC:-0.0350592631355;SOX2:-0.0539835495998;NRF1:-0.0557687286615;FOS_FOS{B,L1}_JUN{B,D}:-0.076714156933;HIC1:-0.0858014703068;SOX{8,9,10}:-0.116084455881;NFE2L2:-0.125731134886;POU6F1:-0.127267802718;BPTF:-0.143523784301;FOXP3:-0.148410059921;SOX5:-0.153021287447;ONECUT1,2:-0.169902698907;NFE2:-0.177031260354;STAT5{A,B}:-0.177859823989;ELK1,4_GABP{A,B1}:-0.188517180099;HMX1:-0.190193008456;PRRX1,2:-0.206836652029;NFIL3:-0.212641692588;OCT4_SOX2{dimer}:-0.213001033892;SOX17:-0.223012613404;MTF1:-0.223244793782;ZFP161:-0.229291801668;ALX1:-0.245453338856;MZF1:-0.247881881482;POU2F1..3:-0.253887888394;PDX1:-0.271111531714;RFX1:-0.272783043778;HNF4A_NR2F1,2:-0.282213581715;FOXP1:-0.282302730136;HNF1A:-0.289978873965;GTF2I:-0.317624870597;FOSL2:-0.321273701017;TFAP2{A,C}:-0.321369850505;CUX2:-0.3255797565;NFATC1..3:-0.342372652091;CREB1:-0.370508583621;IRF1,2:-0.371635887882;NKX2-1,4:-0.381503138684;STAT2,4,6:-0.393754471587;ESRRA:-0.408263666446;ATF6:-0.408905265953;HLF:-0.418679583746;TLX2:-0.425198885843;ADNP_IRX_SIX_ZHX:-0.440721518919;PBX1:-0.463160060733;IRF7:-0.468108108306;NKX6-1,2:-0.479589180465;MED-1{core}:-0.485026148046;RBPJ:-0.516104685558;NKX2-3_NKX2-5:-0.529195471797;TFAP2B:-0.529765285952;JUN:-0.54186015866;FOX{D1,D2}:-0.543948687536;ATF5_CREB3:-0.548595346659;RREB1:-0.570415818455;SPIB:-0.577162885074;XCPE1{core}:-0.582336541809;NFKB1_REL_RELA:-0.583335999997;RFX2..5_RFXANK_RFXAP:-0.590122889189;SPI1:-0.599208575051;AHR_ARNT_ARNT2:-0.611535360237;SNAI1..3:-0.614257495431;TEF:-0.654228961989;PAX5:-0.672844405863;MYFfamily:-0.675419014245;ELF1,2,4:-0.67804375724;FOXQ1:-0.680673440357;PRDM1:-0.70189177585;HOX{A6,A7,B6,B7}:-0.720221000729;HIF1A:-0.720442669854;REST:-0.735342322799;FOXN1:-0.736111998717;bHLH_family:-0.740773601234;GATA6:-0.760946243196;ETS1,2:-0.785804410902;FOX{I1,J2}:-0.798557215169;BREu{core}:-0.801945065868;SP1:-0.811394919032;RORA:-0.822885959419;CEBPA,B_DDIT3:-0.838756235061;SREBF1,2:-0.841385046655;ATF4:-0.858286190443;XBP1:-0.861479908903;PATZ1:-0.876736339222;ZEB1:-0.960750920188;HBP1_HMGB_SSRP1_UBTF:-0.985504752625;POU5F1:-1.0096529039;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03803181779;VSX1,2:-1.07736986397;EGR1..3:-1.08104646118;ATF2:-1.18089888002;ZNF423:-1.18172933215;NANOG:-1.32913164119;STAT1,3:-1.36872504407;MAFB:-1.39634511205;PAX2:-1.42673022857;FOX{F1,F2,J1}:-1.68125969782;CRX:-1.73289097516 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10568-108B1;search_select_hide=table117:FF:10568-108B1 | |||
}} | }} | ||
Latest revision as of 14:29, 3 June 2020
| Name: | mesenchymal stem cell line:Hu5/E18 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11718 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11718
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11718
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0719 |
| 10 | 10 | 0.0667 |
| 100 | 100 | 0.306 |
| 101 | 101 | 0.664 |
| 102 | 102 | 0.707 |
| 103 | 103 | 0.367 |
| 104 | 104 | 0.86 |
| 105 | 105 | 0.0466 |
| 106 | 106 | 0.485 |
| 107 | 107 | 0.0318 |
| 108 | 108 | 0.451 |
| 109 | 109 | 0.00966 |
| 11 | 11 | 0.353 |
| 110 | 110 | 0.0454 |
| 111 | 111 | 0.0528 |
| 112 | 112 | 0.663 |
| 113 | 113 | 0.0074 |
| 114 | 114 | 0.0929 |
| 115 | 115 | 0.0351 |
| 116 | 116 | 0.151 |
| 117 | 117 | 0.114 |
| 118 | 118 | 0.268 |
| 119 | 119 | 0.392 |
| 12 | 12 | 0.353 |
| 120 | 120 | 0.0611 |
| 121 | 121 | 0.564 |
| 122 | 122 | 0.0509 |
| 123 | 123 | 0.166 |
| 124 | 124 | 0.722 |
| 125 | 125 | 0.0423 |
| 126 | 126 | 0.729 |
| 127 | 127 | 0.67 |
| 128 | 128 | 0.754 |
| 129 | 129 | 0.46 |
| 13 | 13 | 0.142 |
| 130 | 130 | 0.946 |
| 131 | 131 | 0.629 |
| 132 | 132 | 0.382 |
| 133 | 133 | 0.368 |
| 134 | 134 | 0.787 |
| 135 | 135 | 0.8 |
| 136 | 136 | 0.265 |
| 137 | 137 | 0.362 |
| 138 | 138 | 0.447 |
| 139 | 139 | 0.895 |
| 14 | 14 | 0.713 |
| 140 | 140 | 0.352 |
| 141 | 141 | 0.81 |
| 142 | 142 | 0.506 |
| 143 | 143 | 0.275 |
| 144 | 144 | 0.83 |
| 145 | 145 | 0.218 |
| 146 | 146 | 0.766 |
| 147 | 147 | 0.417 |
| 148 | 148 | 0.291 |
| 149 | 149 | 0.0115 |
| 15 | 15 | 0.335 |
| 150 | 150 | 0.397 |
| 151 | 151 | 0.817 |
| 152 | 152 | 0.81 |
| 153 | 153 | 0.879 |
| 154 | 154 | 0.878 |
| 155 | 155 | 0.354 |
| 156 | 156 | 0.515 |
| 157 | 157 | 0.361 |
| 158 | 158 | 0.327 |
| 159 | 159 | 0.543 |
| 16 | 16 | 0.0426 |
| 160 | 160 | 0.167 |
| 161 | 161 | 0.891 |
| 162 | 162 | 0.335 |
| 163 | 163 | 0.129 |
| 164 | 164 | 0.627 |
| 165 | 165 | 0.142 |
| 166 | 166 | 0.646 |
| 167 | 167 | 0.302 |
| 168 | 168 | 0.343 |
| 169 | 169 | 0.0332 |
| 17 | 17 | 0.157 |
| 18 | 18 | 0.408 |
| 19 | 19 | 0.0143 |
| 2 | 2 | 0.923 |
| 20 | 20 | 0.976 |
| 21 | 21 | 0.145 |
| 22 | 22 | 0.445 |
| 23 | 23 | 0.807 |
| 24 | 24 | 0.999 |
| 25 | 25 | 0.478 |
| 26 | 26 | 0.011 |
| 27 | 27 | 0.837 |
| 28 | 28 | 0.749 |
| 29 | 29 | 0.355 |
| 3 | 3 | 0.284 |
| 30 | 30 | 0.318 |
| 31 | 31 | 0.932 |
| 32 | 32 | 7.22934e-4 |
| 33 | 33 | 0.109 |
| 34 | 34 | 0.127 |
| 35 | 35 | 0.945 |
| 36 | 36 | 0.463 |
| 37 | 37 | 0.103 |
| 38 | 38 | 0.924 |
| 39 | 39 | 0.238 |
| 4 | 4 | 0.637 |
| 40 | 40 | 0.0673 |
| 41 | 41 | 0.562 |
| 42 | 42 | 0.929 |
| 43 | 43 | 0.127 |
| 44 | 44 | 0.0759 |
| 45 | 45 | 0.617 |
| 46 | 46 | 0.021 |
| 47 | 47 | 0.315 |
| 48 | 48 | 0.428 |
| 49 | 49 | 0.308 |
| 5 | 5 | 0.612 |
| 50 | 50 | 0.692 |
| 51 | 51 | 0.842 |
| 52 | 52 | 0.947 |
| 53 | 53 | 0.421 |
| 54 | 54 | 0.991 |
| 55 | 55 | 0.439 |
| 56 | 56 | 0.647 |
| 57 | 57 | 0.157 |
| 58 | 58 | 0.527 |
| 59 | 59 | 0.0128 |
| 6 | 6 | 0.284 |
| 60 | 60 | 0.852 |
| 61 | 61 | 0.787 |
| 62 | 62 | 0.798 |
| 63 | 63 | 0.441 |
| 64 | 64 | 0.922 |
| 65 | 65 | 0.916 |
| 66 | 66 | 0.0345 |
| 67 | 67 | 0.831 |
| 68 | 68 | 0.395 |
| 69 | 69 | 0.148 |
| 7 | 7 | 0.734 |
| 70 | 70 | 0.331 |
| 71 | 71 | 0.0352 |
| 72 | 72 | 0.22 |
| 73 | 73 | 0.109 |
| 74 | 74 | 0.65 |
| 75 | 75 | 0.264 |
| 76 | 76 | 0.918 |
| 77 | 77 | 0.0554 |
| 78 | 78 | 0.145 |
| 79 | 79 | 0.0454 |
| 8 | 8 | 0.0695 |
| 80 | 80 | 0.572 |
| 81 | 81 | 0.619 |
| 82 | 82 | 0.657 |
| 83 | 83 | 0.817 |
| 84 | 84 | 0.124 |
| 85 | 85 | 0.602 |
| 86 | 86 | 0.706 |
| 87 | 87 | 0.911 |
| 88 | 88 | 0.68 |
| 89 | 89 | 0.23 |
| 9 | 9 | 0.91 |
| 90 | 90 | 0.217 |
| 91 | 91 | 0.667 |
| 92 | 92 | 0.759 |
| 93 | 93 | 0.826 |
| 94 | 94 | 0.422 |
| 95 | 95 | 0.122 |
| 96 | 96 | 0.361 |
| 97 | 97 | 0.811 |
| 98 | 98 | 0.579 |
| 99 | 99 | 0.00336 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11718
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000134 mesenchymal cell
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
