FF:11751-123G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005728 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008549;DRR009421;DRZ000846;DRZ002231;DRZ012196;DRZ013581 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000269 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11751-123G5 | |id=FF:11751-123G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000269 | ||
|is_obsolete= | |||
|library_id=CNhs12367 | |||
|library_id_phase_based=2:CNhs12367 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11751 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11751 | |||
|name=mesenchymal precursor cell - bone marrow, donor2 | |name=mesenchymal precursor cell - bone marrow, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12367,LSID914,release011,COMPLETED | |profile_hcage=CNhs12367,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.0876549266525155,0.0681682072851005,0,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0,0.360441924091779,0,0,0,0,0,0.343104627070336,0,0,0.0440416296959771,0,0,0,0,0,0,0,0,0,0,0.399571176171076,0,0.102613079376701,0.0974544165143517,0.176998219474839,0,0,0,0,0,0,0.097886875460397,0,0,0,0,0,0,0,0.205397365767308,0,0,0.0796545922617424,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0487272082571759,0,0.090857229685628,0,0,0,-0.0396706779215379,0.321887484658769,0,0,-0.0314923537822552,-0.0890955061226375,0,0.353693068263957,0.0487272082571759,0.176998219474839,-0.000580934723354756,0.0614448709612373,0,0,0,0,0,0,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0.0010808225918907,0,0,0,0.0609589138561027,0.0627359528702975,0,0,0.0974544165143517,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.000580934723354756,0,0.176998219474839,0,0,0.0974544165143517,0.399571176171076,0.244203793146463,0,0.353693068263957,0,0,-0.00297508213910166,0,0.00484706669849444,-0.0460607260091202,0,0,0.218340262626443,0,0.244203793146463,0,0.041098099241849,0,0,0.176998219474839,0.0974544165143517,0,0.417889350051891,0,0.349158624581761,0,0,0.0974544165143517,0,0.0463908647031833,0.298625764331382,0,0.0826244060705935,0.108653958397471,0,0,0,0,0.552538007974136,0,-0.023425067279389,0.161483624823045,0.022592205043656,0.14600489690361,-0.055712496781182,0,0,0,0.167196655852281,0.188287083311331,0,0,0.0294150117530827,0.275318436744982,0,0,1.25258682165545,0,0.494808961094323,0.0767865760977252,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701509301231485,0.277109398550821,0,0,0.0974544165143517,0,0.00323742424537721,0,0.0663152578331942,0.327857379767518,0.116518990768269,-0.0419322542077925,-0.483132657308406,0,0,0.0833593090241275,0.0744531975794809,-0.0976581987980127,0.398607367633317,0.386042366850836,0,0.236013397422106,0.0118893111642574,-0.0217377521385385,-0.0396706779215379,-0.092561708199203,0.330540046068472,-0.0822370505461947,0,0.0974544165143517,0.107783196689131,0.191513086965103,0,-0.098160970386004,0.211028821247312,-0.0957369068236577,-0.00575778298246515,-0.015592608119665,0.04868372561911,0.0569255464927052,0.433257668131096,0.197889363049808,0,0.465047205680919,0,0,-0.0198785522853315,-0.00292017507464084,0.0457056994769951,-0.262133104914722,0.00884602982814705,0.0620317551934749,-0.0683442610773682,0,0.0677607288992118,-0.0786111417890858,0,0.00328559022653119,-0.137714707533018,0.0974544165143517,0,0.0221796241495712,0,0.0974544165143517,0.0976174046466147,0.182866501728683,-0.135401145041193,0,-0.117938886629588,0.0350933681258902,-0.208786970615167,0,-0.33017973895792,0.0974544165143517,-0.200619735846941,-0.0177908077345845,0,0.0471086275340203,0.00448166677597195,0.0812549719041924,-0.178191012245275,0.0390075897025265,0.0314401355089972,-0.0295420393253004,-0.0928591012825097,0.12990108781882,0,-0.0881268324752877,0,-0.0519269439340626,0.0630873614990233,-0.0731878667936736,-0.117101641040621,0.0974544165143517,0.0344530472126514,0,-0.128213332161747,0,-0.480394954495795,0.0355903349274435,-0.0855963063167294,0.0388341377591606,0,-0.046427737813787,0.438437465389182,0,0,0,0,0.152022643675274,-0.0935979712827929,-0.0744241098699937,-0.00176313868459914,0,0.402792094513508,0,0,0.367817678490521,0.00872775538207407,0,-0.0490503787215303,-0.0954379797731899,0.0746225712297307,0.0610271460399053,0,0,0.216979382166716,0,0,0.0245387355499581,0.176998219474839,-0.31739359694872,0.14624483468432,0,0.068223724677723,0,0,-0.080073349450824,0,0.0457230849213337,0,0,0.20991055969887,0,0,0,0.576024086400684,0.04258160796168,0,0.0384979055289955,0,0,0,0,0,-0.45569142354763,0.086229193121946,0,0,0,0,0,0,0,0.0803031857092932,0,0.0974544165143517,0.905573043584233,0,-0.0255629991620686,0,0,0,0,0.183847773617601,-0.105782145580372,0.176998219474839,-0.131862706497632,0,0,0,0,0.090857229685628,0,0,0,0,-0.057730457053664,-0.0820212691185562,0,0,0,0.0254353254081228,0,0,0.353693068263957,0.0540516580065959,-0.117348740468903,0,0,0.381244757445228,0,0.0459240200079467,0.272111188717115,0,-0.0412025390532585,0.0871434092934593,-0.910049164477386,0,0,-0.261347131789888,0,0,0.0887824444587355,0,0.0974544165143517,0,0,0,0,0,0,0.0974544165143517,0.139378555864201,0,0,0,0,0,0,0,0.0974544165143517,0,0,0,0.183147269490736,0.210165670351403,0.0974544165143517,0,0,0,0,0,0,0.364040491390785,0.020351049169506,0,0,0,0,0,0,0,0,-0.169036212653329,0,0,0,0,0,0.205397365767308,0,0,0,0,0.136336414570201,0,0,-0.100363912718675,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0536791334393916,-0.0876549266525155,0,0,0,0,0,0,0,-0.0306295050596277,0,0,0,0,-0.0164299571946255,0,0,0,-0.00734196827480478,0,-0.160318030086386,0,0,0,0,0,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0,0.0884991097374195,0,0,0,0.460335046074876,0.00474260478182339,0.176385259125219,-0.00957480653434528,0,0,0.128550969746383,0,0,0,0,0,0,0.0571586857088925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0.244203793146463,0,0,0.343104627070336,0,0,-0.0035337000631065,0,0,0,0,0.0663674640127447,0,0.172021063737739,0.566565834639486,0.0300077824142192,0,0,0.0974544165143517,0.0677163240907765,0,0,0,0,0.110220832055938,0.176998219474839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360441924091779,0,0,0,0,0,0,0,0,0,0,0,0,0.0487272082571759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399571176171076,0,0,0,0,0,0,0.176998219474839,0.0147158449817593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222371258741275,0,0,0,0.186484946514032,0,0,0,0,0,0,0.244203793146463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974544165143517,0,0,0,0.0356336563879993,0,0,0,0,0,0,0,0,0.399571176171076,0,0,0,0,0.254167651770859,0,0.0130777842843245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974544165143517,0.393909776377121,0,0,0,0,-0.0476371106609188,0,0,0,0,0,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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=40.287 | |rna_weight_ug=40.287 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.24648763160291e-207!GO:0005737;cytoplasm;1.98090013455187e-195!GO:0043226;organelle;8.31142782639905e-160!GO:0043229;intracellular organelle;1.50712605410136e-159!GO:0043231;intracellular membrane-bound organelle;1.61935656291478e-154!GO:0043227;membrane-bound organelle;3.25562425267133e-154!GO:0044444;cytoplasmic part;9.14451602801408e-154!GO:0044422;organelle part;2.37897277302285e-119!GO:0044446;intracellular organelle part;5.89175810017651e-118!GO:0032991;macromolecular complex;3.10493066436365e-83!GO:0030529;ribonucleoprotein complex;2.80166170757073e-75!GO:0005515;protein binding;1.47242961687757e-72!GO:0044238;primary metabolic process;3.83759209444382e-70!GO:0044237;cellular metabolic process;1.58605064682842e-69!GO:0005739;mitochondrion;9.35873196557578e-64!GO:0043170;macromolecule metabolic process;1.73446808451079e-62!GO:0043233;organelle lumen;1.78189963488115e-60!GO:0031974;membrane-enclosed lumen;1.78189963488115e-60!GO:0003723;RNA binding;3.49346438649993e-57!GO:0044428;nuclear part;1.46491545473625e-53!GO:0031090;organelle membrane;7.52895135917377e-53!GO:0005840;ribosome;1.08997515221177e-48!GO:0019538;protein metabolic process;1.15047146559838e-46!GO:0006412;translation;4.67266411142272e-44!GO:0015031;protein transport;7.73156279571322e-44!GO:0003735;structural constituent of ribosome;1.71328126823537e-43!GO:0005634;nucleus;2.12581937267559e-43!GO:0033036;macromolecule localization;3.08714689485638e-43!GO:0044429;mitochondrial part;2.96665687244912e-42!GO:0016043;cellular component organization and biogenesis;8.68430384536228e-42!GO:0045184;establishment of protein localization;1.42708786516933e-41!GO:0044260;cellular macromolecule metabolic process;1.98606462693285e-41!GO:0043234;protein complex;2.31816440213689e-41!GO:0008104;protein localization;6.14637807559398e-41!GO:0005829;cytosol;6.53218165613314e-41!GO:0009058;biosynthetic process;1.14439960183587e-40!GO:0044267;cellular protein metabolic process;3.97236002313166e-40!GO:0033279;ribosomal subunit;9.85447909712109e-39!GO:0009059;macromolecule biosynthetic process;1.86212693609345e-37!GO:0006396;RNA processing;2.3160208277455e-37!GO:0031967;organelle envelope;3.19650677533503e-35!GO:0031975;envelope;7.50498261184555e-35!GO:0044249;cellular biosynthetic process;1.16289083549681e-34!GO:0031981;nuclear lumen;1.29283595027799e-32!GO:0046907;intracellular transport;2.16315677103891e-32!GO:0016071;mRNA metabolic process;1.53460002616109e-30!GO:0008380;RNA splicing;9.96519285111303e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.2902203682388e-28!GO:0010467;gene expression;1.63527346387469e-28!GO:0005740;mitochondrial envelope;6.46337800863965e-28!GO:0006886;intracellular protein transport;1.00492592791352e-27!GO:0043283;biopolymer metabolic process;1.3855795638685e-27!GO:0006397;mRNA processing;1.84555305672411e-26!GO:0005783;endoplasmic reticulum;2.07368007946663e-26!GO:0031966;mitochondrial membrane;3.87098113270066e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.76025695389907e-25!GO:0019866;organelle inner membrane;2.55264381374739e-24!GO:0065003;macromolecular complex assembly;3.09151765669965e-24!GO:0005743;mitochondrial inner membrane;4.25585173552958e-23!GO:0006119;oxidative phosphorylation;1.08174522150605e-22!GO:0044445;cytosolic part;1.08174522150605e-22!GO:0022607;cellular component assembly;2.74893157374743e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.12478228743071e-22!GO:0043228;non-membrane-bound organelle;1.16829939683277e-21!GO:0043232;intracellular non-membrane-bound organelle;1.16829939683277e-21!GO:0006457;protein folding;1.68410599461645e-21!GO:0012505;endomembrane system;2.39882695873233e-21!GO:0044432;endoplasmic reticulum part;7.71776932730947e-21!GO:0051641;cellular localization;1.53120088901003e-20!GO:0051649;establishment of cellular localization;2.0100337078832e-20!GO:0015935;small ribosomal subunit;2.38395417010946e-20!GO:0006996;organelle organization and biogenesis;3.07394785804733e-20!GO:0005681;spliceosome;1.23968086410609e-19!GO:0005654;nucleoplasm;1.51699687066401e-19!GO:0015934;large ribosomal subunit;2.0390758379091e-19!GO:0048770;pigment granule;2.13742356411477e-19!GO:0042470;melanosome;2.13742356411477e-19!GO:0044455;mitochondrial membrane part;5.13626232864335e-19!GO:0005794;Golgi apparatus;1.36818087913457e-18!GO:0051186;cofactor metabolic process;2.17258986880335e-17!GO:0031980;mitochondrial lumen;3.39927506184712e-17!GO:0005759;mitochondrial matrix;3.39927506184712e-17!GO:0005746;mitochondrial respiratory chain;6.38177108129783e-17!GO:0022618;protein-RNA complex assembly;8.74970838308635e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.15838975115183e-16!GO:0016462;pyrophosphatase activity;2.41835347717474e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.5791461476917e-16!GO:0044451;nucleoplasm part;3.59134671354642e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;3.60795419020657e-16!GO:0044265;cellular macromolecule catabolic process;5.56747813623367e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.93891654332199e-16!GO:0008134;transcription factor binding;1.08230204811164e-15!GO:0017111;nucleoside-triphosphatase activity;1.7209305145937e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.45841643693213e-15!GO:0043285;biopolymer catabolic process;8.63901554738446e-15!GO:0048193;Golgi vesicle transport;9.28861739775493e-15!GO:0016874;ligase activity;9.85490479285938e-15!GO:0009057;macromolecule catabolic process;1.01332467602322e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.10850996386685e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.15371631766202e-14!GO:0003954;NADH dehydrogenase activity;1.15371631766202e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.15371631766202e-14!GO:0006512;ubiquitin cycle;1.40950905436218e-14!GO:0000166;nucleotide binding;1.54399445062871e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.28936686573518e-14!GO:0044248;cellular catabolic process;2.30325537935345e-14!GO:0005789;endoplasmic reticulum membrane;2.98829582293318e-14!GO:0008135;translation factor activity, nucleic acid binding;3.75462561639803e-14!GO:0019941;modification-dependent protein catabolic process;4.80132608423705e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.80132608423705e-14!GO:0006605;protein targeting;5.00005126684042e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.12356528626689e-14!GO:0044257;cellular protein catabolic process;6.12374172018074e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.65589188792093e-14!GO:0051082;unfolded protein binding;8.09926543010937e-14!GO:0005730;nucleolus;8.65193554499552e-14!GO:0016192;vesicle-mediated transport;1.78297258322312e-13!GO:0005761;mitochondrial ribosome;1.90297374011265e-13!GO:0000313;organellar ribosome;1.90297374011265e-13!GO:0030163;protein catabolic process;2.16858360446518e-13!GO:0006732;coenzyme metabolic process;2.23005830532207e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.42936502485877e-13!GO:0005793;ER-Golgi intermediate compartment;2.55475162740326e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.10877773906455e-13!GO:0042773;ATP synthesis coupled electron transport;4.10877773906455e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.46115329561505e-13!GO:0045271;respiratory chain complex I;5.46115329561505e-13!GO:0005747;mitochondrial respiratory chain complex I;5.46115329561505e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.80762181831357e-12!GO:0009055;electron carrier activity;1.52523635370503e-11!GO:0003676;nucleic acid binding;1.61478735705104e-11!GO:0006259;DNA metabolic process;1.71073957926697e-11!GO:0003743;translation initiation factor activity;2.19606753031657e-11!GO:0006413;translational initiation;5.76009366605524e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.58581343454818e-11!GO:0000375;RNA splicing, via transesterification reactions;8.58581343454818e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.58581343454818e-11!GO:0043412;biopolymer modification;1.46681246588103e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.99978995030668e-10!GO:0006163;purine nucleotide metabolic process;2.32064376732435e-10!GO:0009259;ribonucleotide metabolic process;2.8043889108974e-10!GO:0009150;purine ribonucleotide metabolic process;2.81283434591003e-10!GO:0005768;endosome;3.11358531721754e-10!GO:0017076;purine nucleotide binding;3.20072730917007e-10!GO:0016491;oxidoreductase activity;3.44653033316987e-10!GO:0016070;RNA metabolic process;6.91435954139807e-10!GO:0012501;programmed cell death;7.59458526159457e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.15129150542588e-09!GO:0003712;transcription cofactor activity;1.19593423423486e-09!GO:0032553;ribonucleotide binding;1.22749130385911e-09!GO:0032555;purine ribonucleotide binding;1.22749130385911e-09!GO:0009141;nucleoside triphosphate metabolic process;1.24229110320038e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.3529614336896e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.3529614336896e-09!GO:0006915;apoptosis;1.3597075156462e-09!GO:0006446;regulation of translational initiation;1.82342940527477e-09!GO:0006464;protein modification process;2.03348087380069e-09!GO:0042254;ribosome biogenesis and assembly;2.20751642882286e-09!GO:0009056;catabolic process;2.36598763922374e-09!GO:0006164;purine nucleotide biosynthetic process;2.52362217168043e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.61604139150198e-09!GO:0005788;endoplasmic reticulum lumen;3.00489899631758e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.00489899631758e-09!GO:0045333;cellular respiration;3.8354145696125e-09!GO:0005773;vacuole;3.97939120509998e-09!GO:0007049;cell cycle;3.99850663768568e-09!GO:0009060;aerobic respiration;6.58849412017452e-09!GO:0015986;ATP synthesis coupled proton transport;6.76140873093715e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.76140873093715e-09!GO:0008219;cell death;7.2625720754743e-09!GO:0016265;death;7.2625720754743e-09!GO:0016604;nuclear body;7.80509897246154e-09!GO:0009260;ribonucleotide biosynthetic process;8.31619472091459e-09!GO:0046034;ATP metabolic process;9.26724303828856e-09!GO:0008639;small protein conjugating enzyme activity;1.37145836625219e-08!GO:0005635;nuclear envelope;1.39883829034708e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.55762373339176e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.55762373339176e-08!GO:0048523;negative regulation of cellular process;1.61689628960501e-08!GO:0008565;protein transporter activity;1.6913557062448e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.83348359185077e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.83348359185077e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.95146913590078e-08!GO:0031965;nuclear membrane;1.99693637165332e-08!GO:0051188;cofactor biosynthetic process;2.06652124742374e-08!GO:0019787;small conjugating protein ligase activity;2.14018237583358e-08!GO:0004842;ubiquitin-protein ligase activity;2.45845764861367e-08!GO:0019829;cation-transporting ATPase activity;2.62058280052286e-08!GO:0003924;GTPase activity;3.11847743630988e-08!GO:0044431;Golgi apparatus part;3.56894830004983e-08!GO:0006461;protein complex assembly;3.90917118277451e-08!GO:0044440;endosomal part;4.01467295682022e-08!GO:0010008;endosome membrane;4.01467295682022e-08!GO:0000323;lytic vacuole;4.56995139989819e-08!GO:0005764;lysosome;4.56995139989819e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.84981538021848e-08!GO:0006091;generation of precursor metabolites and energy;4.88041314395229e-08!GO:0006913;nucleocytoplasmic transport;8.18880529561078e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.2084919272348e-08!GO:0016881;acid-amino acid ligase activity;1.04239407865987e-07!GO:0030120;vesicle coat;1.0430877634835e-07!GO:0030662;coated vesicle membrane;1.0430877634835e-07!GO:0006754;ATP biosynthetic process;1.12148545782076e-07!GO:0006753;nucleoside phosphate metabolic process;1.12148545782076e-07!GO:0005770;late endosome;1.13925906338633e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.16809632304371e-07!GO:0006974;response to DNA damage stimulus;1.17833379680703e-07!GO:0051169;nuclear transport;1.57526678696202e-07!GO:0006099;tricarboxylic acid cycle;2.14510958210816e-07!GO:0046356;acetyl-CoA catabolic process;2.14510958210816e-07!GO:0016607;nuclear speck;2.48024234995871e-07!GO:0008361;regulation of cell size;2.58967619600824e-07!GO:0016049;cell growth;3.12763013810233e-07!GO:0042623;ATPase activity, coupled;3.1537643910768e-07!GO:0017038;protein import;3.1537643910768e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.23078489707608e-07!GO:0048475;coated membrane;3.23078489707608e-07!GO:0030117;membrane coat;3.23078489707608e-07!GO:0016887;ATPase activity;3.27869964342065e-07!GO:0006399;tRNA metabolic process;3.39317175123356e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.72058168575603e-07!GO:0048519;negative regulation of biological process;4.36132635357633e-07!GO:0030554;adenyl nucleotide binding;4.5338745433773e-07!GO:0051246;regulation of protein metabolic process;4.69982540192899e-07!GO:0044453;nuclear membrane part;4.72331667541279e-07!GO:0051187;cofactor catabolic process;4.72331667541279e-07!GO:0005524;ATP binding;5.94970071514019e-07!GO:0043687;post-translational protein modification;6.62273497459739e-07!GO:0006084;acetyl-CoA metabolic process;8.45847096868096e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.89439835321847e-07!GO:0001558;regulation of cell growth;1.00423778111263e-06!GO:0031252;leading edge;1.02614680101654e-06!GO:0009108;coenzyme biosynthetic process;1.09563183819375e-06!GO:0009109;coenzyme catabolic process;1.15794917999504e-06!GO:0032559;adenyl ribonucleotide binding;1.24263849454783e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.24297940921603e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.24297940921603e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.24297940921603e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.24836838060931e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.60652967845022e-06!GO:0043038;amino acid activation;1.75558510920955e-06!GO:0006418;tRNA aminoacylation for protein translation;1.75558510920955e-06!GO:0043039;tRNA aminoacylation;1.75558510920955e-06!GO:0009117;nucleotide metabolic process;1.97208099623025e-06!GO:0016853;isomerase activity;2.09191783767004e-06!GO:0004298;threonine endopeptidase activity;2.1203333280398e-06!GO:0000139;Golgi membrane;2.17425866018711e-06!GO:0042981;regulation of apoptosis;2.18445744659567e-06!GO:0022402;cell cycle process;2.27468884378164e-06!GO:0000074;regulation of progression through cell cycle;2.65922505892355e-06!GO:0043067;regulation of programmed cell death;2.87152429433377e-06!GO:0051726;regulation of cell cycle;2.87748547749215e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.89137299781033e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.95546416525612e-06!GO:0031988;membrane-bound vesicle;2.99712691719935e-06!GO:0006366;transcription from RNA polymerase II promoter;2.99712691719935e-06!GO:0006752;group transfer coenzyme metabolic process;3.19130098214943e-06!GO:0043069;negative regulation of programmed cell death;3.24980045669411e-06!GO:0008654;phospholipid biosynthetic process;3.62234459281443e-06!GO:0043066;negative regulation of apoptosis;3.84955203515788e-06!GO:0045259;proton-transporting ATP synthase complex;4.44760926555734e-06!GO:0007005;mitochondrion organization and biogenesis;5.06685869837884e-06!GO:0045786;negative regulation of progression through cell cycle;6.18817086140013e-06!GO:0006364;rRNA processing;6.21733508778866e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.23391717887056e-06!GO:0005525;GTP binding;6.70765920202321e-06!GO:0009719;response to endogenous stimulus;6.98589078702328e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.52307780518462e-06!GO:0004386;helicase activity;8.39997185196504e-06!GO:0044262;cellular carbohydrate metabolic process;9.02907890246694e-06!GO:0008026;ATP-dependent helicase activity;9.29825622619038e-06!GO:0005798;Golgi-associated vesicle;9.52554604316864e-06!GO:0000245;spliceosome assembly;9.69048417866965e-06!GO:0031982;vesicle;9.79801736467076e-06!GO:0006916;anti-apoptosis;1.00096443517012e-05!GO:0016072;rRNA metabolic process;1.00839701282741e-05!GO:0031410;cytoplasmic vesicle;1.06899318097582e-05!GO:0006281;DNA repair;1.07726315351891e-05!GO:0043566;structure-specific DNA binding;1.12527906294066e-05!GO:0051789;response to protein stimulus;1.20781395831921e-05!GO:0006986;response to unfolded protein;1.20781395831921e-05!GO:0065002;intracellular protein transport across a membrane;1.31149901071177e-05!GO:0006613;cotranslational protein targeting to membrane;1.40715641441884e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.61986854466774e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.65555723529428e-05!GO:0003714;transcription corepressor activity;1.95080535534246e-05!GO:0045454;cell redox homeostasis;1.9579557096554e-05!GO:0032446;protein modification by small protein conjugation;2.22060685518384e-05!GO:0019843;rRNA binding;2.32931853027765e-05!GO:0016859;cis-trans isomerase activity;2.3329990363854e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.34994010083431e-05!GO:0030133;transport vesicle;2.44676433001063e-05!GO:0003697;single-stranded DNA binding;2.51187391886571e-05!GO:0005762;mitochondrial large ribosomal subunit;2.62756750043597e-05!GO:0000315;organellar large ribosomal subunit;2.62756750043597e-05!GO:0005643;nuclear pore;2.76664862231386e-05!GO:0019867;outer membrane;2.82061389647811e-05!GO:0050794;regulation of cellular process;3.16723698162619e-05!GO:0005769;early endosome;3.16723698162619e-05!GO:0016567;protein ubiquitination;3.21297879749861e-05!GO:0031968;organelle outer membrane;3.89921640540259e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.49030208074536e-05!GO:0000151;ubiquitin ligase complex;4.53772914013663e-05!GO:0032561;guanyl ribonucleotide binding;4.53772914013663e-05!GO:0019001;guanyl nucleotide binding;4.53772914013663e-05!GO:0051170;nuclear import;4.54474270710379e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.98166437870527e-05!GO:0030029;actin filament-based process;5.05748493338552e-05!GO:0030867;rough endoplasmic reticulum membrane;6.17533901301544e-05!GO:0005667;transcription factor complex;6.30869809970215e-05!GO:0005791;rough endoplasmic reticulum;6.77626599489313e-05!GO:0006606;protein import into nucleus;6.79819248451494e-05!GO:0000278;mitotic cell cycle;6.80290282133247e-05!GO:0008092;cytoskeletal protein binding;8.1090634368402e-05!GO:0031324;negative regulation of cellular metabolic process;8.11258773515471e-05!GO:0016787;hydrolase activity;8.26278295077834e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.79282846021892e-05!GO:0016564;transcription repressor activity;0.000102451582694306!GO:0006323;DNA packaging;0.000110117409541002!GO:0016126;sterol biosynthetic process;0.000116818740239094!GO:0040008;regulation of growth;0.000146211988009353!GO:0005741;mitochondrial outer membrane;0.00015420732948349!GO:0043021;ribonucleoprotein binding;0.00015859807707379!GO:0051427;hormone receptor binding;0.000159605333347359!GO:0000314;organellar small ribosomal subunit;0.000162645868201108!GO:0005763;mitochondrial small ribosomal subunit;0.000162645868201108!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000185619871201425!GO:0003713;transcription coactivator activity;0.000189902903725603!GO:0046930;pore complex;0.00020810854963121!GO:0004576;oligosaccharyl transferase activity;0.000260964802061629!GO:0050789;regulation of biological process;0.000266394504232264!GO:0009892;negative regulation of metabolic process;0.000268405867179957!GO:0006612;protein targeting to membrane;0.000272075140694876!GO:0046474;glycerophospholipid biosynthetic process;0.000290973885948621!GO:0003724;RNA helicase activity;0.000321835866775127!GO:0008250;oligosaccharyl transferase complex;0.000323735028646464!GO:0035257;nuclear hormone receptor binding;0.000325863702639873!GO:0016568;chromatin modification;0.000333975793674576!GO:0005905;coated pit;0.000351888245786114!GO:0016563;transcription activator activity;0.000352509892045304!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000376460768353269!GO:0016779;nucleotidyltransferase activity;0.000395090498702521!GO:0016740;transferase activity;0.000397702290567026!GO:0008610;lipid biosynthetic process;0.000413696602243451!GO:0005885;Arp2/3 protein complex;0.00043064447728331!GO:0006403;RNA localization;0.000436005231781494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000459535331380303!GO:0050657;nucleic acid transport;0.000467329471175561!GO:0051236;establishment of RNA localization;0.000467329471175561!GO:0050658;RNA transport;0.000467329471175561!GO:0051276;chromosome organization and biogenesis;0.000511587608801281!GO:0005048;signal sequence binding;0.000541177513657652!GO:0007243;protein kinase cascade;0.000555494539734472!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000555494539734472!GO:0031902;late endosome membrane;0.000592482226253006!GO:0030663;COPI coated vesicle membrane;0.000595645855123638!GO:0030126;COPI vesicle coat;0.000595645855123638!GO:0018196;peptidyl-asparagine modification;0.000683183738700106!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000683183738700106!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000683183738700106!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000797094174158491!GO:0050662;coenzyme binding;0.000806924503164089!GO:0051920;peroxiredoxin activity;0.00086017321059524!GO:0001726;ruffle;0.000864434421896193!GO:0022890;inorganic cation transmembrane transporter activity;0.000864434421896193!GO:0065004;protein-DNA complex assembly;0.000897643210738641!GO:0006793;phosphorus metabolic process;0.000934677965059859!GO:0006796;phosphate metabolic process;0.000934677965059859!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00110684973109986!GO:0016044;membrane organization and biogenesis;0.00112397083771693!GO:0005774;vacuolar membrane;0.00145348574630562!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00149540541592233!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00149540541592233!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00149540541592233!GO:0006891;intra-Golgi vesicle-mediated transport;0.00162751237252821!GO:0046467;membrane lipid biosynthetic process;0.00163132835852904!GO:0016481;negative regulation of transcription;0.00164431658841606!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00164508571007083!GO:0043681;protein import into mitochondrion;0.00170674296635797!GO:0048522;positive regulation of cellular process;0.00178174497573726!GO:0046489;phosphoinositide biosynthetic process;0.00178764294651648!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00184679498540659!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00190660649893824!GO:0005813;centrosome;0.00192815810115154!GO:0006695;cholesterol biosynthetic process;0.00195468202644607!GO:0007010;cytoskeleton organization and biogenesis;0.00197080429968476!GO:0030137;COPI-coated vesicle;0.00204270443468483!GO:0031072;heat shock protein binding;0.002054322687792!GO:0009165;nucleotide biosynthetic process;0.00210435570382128!GO:0016310;phosphorylation;0.00216905208167884!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00216926094686475!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00217288935817415!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00218681545038208!GO:0006118;electron transport;0.00231671555018351!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00232340106432361!GO:0015399;primary active transmembrane transporter activity;0.00232340106432361!GO:0030027;lamellipodium;0.00232510108915859!GO:0006626;protein targeting to mitochondrion;0.00246778323854599!GO:0048500;signal recognition particle;0.00246967916177059!GO:0048471;perinuclear region of cytoplasm;0.00248817616588194!GO:0015630;microtubule cytoskeleton;0.0025569427055062!GO:0016197;endosome transport;0.0026718295606146!GO:0006979;response to oxidative stress;0.00271094233568532!GO:0030132;clathrin coat of coated pit;0.00277724853690815!GO:0007264;small GTPase mediated signal transduction;0.00278273059510747!GO:0043284;biopolymer biosynthetic process;0.00282185432027305!GO:0007050;cell cycle arrest;0.00302773347654094!GO:0051287;NAD binding;0.00306489944651532!GO:0030176;integral to endoplasmic reticulum membrane;0.00325634921169422!GO:0005694;chromosome;0.00326766645464643!GO:0016408;C-acyltransferase activity;0.00327358931642144!GO:0043623;cellular protein complex assembly;0.00354245965605683!GO:0005520;insulin-like growth factor binding;0.00368541318658628!GO:0015992;proton transport;0.00369126521618393!GO:0006818;hydrogen transport;0.00369350911017607!GO:0019899;enzyme binding;0.00373328438959194!GO:0006509;membrane protein ectodomain proteolysis;0.00376797379687207!GO:0033619;membrane protein proteolysis;0.00376797379687207!GO:0003690;double-stranded DNA binding;0.00411342459355971!GO:0008154;actin polymerization and/or depolymerization;0.00415262866481345!GO:0003899;DNA-directed RNA polymerase activity;0.00416108901189545!GO:0006414;translational elongation;0.00420389694433739!GO:0003729;mRNA binding;0.00424868382667183!GO:0044437;vacuolar part;0.00430638512394377!GO:0043488;regulation of mRNA stability;0.0043659247006988!GO:0043487;regulation of RNA stability;0.0043659247006988!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00436767390625429!GO:0004177;aminopeptidase activity;0.00444262937532555!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00444262937532555!GO:0015002;heme-copper terminal oxidase activity;0.00444262937532555!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00444262937532555!GO:0004129;cytochrome-c oxidase activity;0.00444262937532555!GO:0005765;lysosomal membrane;0.00446440619766012!GO:0006650;glycerophospholipid metabolic process;0.00454219058909637!GO:0008186;RNA-dependent ATPase activity;0.00455297175015639!GO:0006333;chromatin assembly or disassembly;0.00476639048474172!GO:0051028;mRNA transport;0.00482537512515452!GO:0030041;actin filament polymerization;0.00520761503594384!GO:0030658;transport vesicle membrane;0.00529890586352688!GO:0005815;microtubule organizing center;0.0054120511545768!GO:0042802;identical protein binding;0.00549559837170286!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00549984494221023!GO:0006383;transcription from RNA polymerase III promoter;0.00555350908236953!GO:0005869;dynactin complex;0.00561737587700346!GO:0006260;DNA replication;0.0056981415502707!GO:0051252;regulation of RNA metabolic process;0.00585043927539448!GO:0030134;ER to Golgi transport vesicle;0.00586311551272895!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00586311551272895!GO:0045047;protein targeting to ER;0.00586311551272895!GO:0019752;carboxylic acid metabolic process;0.00599757388666781!GO:0006082;organic acid metabolic process;0.0061927820298847!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00622074046396695!GO:0030880;RNA polymerase complex;0.00640779045474726!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00661226280512924!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00661226280512924!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0069148670204249!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0069148670204249!GO:0007040;lysosome organization and biogenesis;0.007032715553857!GO:0006007;glucose catabolic process;0.00708375391954244!GO:0030118;clathrin coat;0.00723463003172922!GO:0016363;nuclear matrix;0.00745066717007143!GO:0031901;early endosome membrane;0.00760253295668399!GO:0006839;mitochondrial transport;0.00771000224490359!GO:0030521;androgen receptor signaling pathway;0.00771000224490359!GO:0006740;NADPH regeneration;0.00796767125814332!GO:0006098;pentose-phosphate shunt;0.00796767125814332!GO:0035258;steroid hormone receptor binding;0.00801410824902804!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00823815252046703!GO:0045045;secretory pathway;0.00865500723238719!GO:0030127;COPII vesicle coat;0.00865519479467843!GO:0012507;ER to Golgi transport vesicle membrane;0.00865519479467843!GO:0008180;signalosome;0.0087286504193493!GO:0007034;vacuolar transport;0.00876454551439316!GO:0009967;positive regulation of signal transduction;0.0088493041285137!GO:0008312;7S RNA binding;0.00887039103152022!GO:0005975;carbohydrate metabolic process;0.00888744756690419!GO:0007006;mitochondrial membrane organization and biogenesis;0.00897687358972365!GO:0007033;vacuole organization and biogenesis;0.00904895044351923!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00923599223478753!GO:0051540;metal cluster binding;0.00952324954322071!GO:0051536;iron-sulfur cluster binding;0.00952324954322071!GO:0051128;regulation of cellular component organization and biogenesis;0.00978724948317269!GO:0017166;vinculin binding;0.00978724948317269!GO:0000785;chromatin;0.0103329512076768!GO:0051087;chaperone binding;0.0105466765959265!GO:0045792;negative regulation of cell size;0.0106263409205214!GO:0051329;interphase of mitotic cell cycle;0.0106786829672747!GO:0004004;ATP-dependent RNA helicase activity;0.0107791414029803!GO:0031529;ruffle organization and biogenesis;0.0111744755735105!GO:0008047;enzyme activator activity;0.0113095402482545!GO:0006790;sulfur metabolic process;0.0114318214008026!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.011760920536568!GO:0046483;heterocycle metabolic process;0.0118366359721849!GO:0043022;ribosome binding;0.0120252636426665!GO:0030308;negative regulation of cell growth;0.0123394659736456!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0124462009929468!GO:0000428;DNA-directed RNA polymerase complex;0.0124462009929468!GO:0051539;4 iron, 4 sulfur cluster binding;0.0124532462538201!GO:0006778;porphyrin metabolic process;0.0126379440239437!GO:0033013;tetrapyrrole metabolic process;0.0126379440239437!GO:0046519;sphingoid metabolic process;0.0130146435902835!GO:0003746;translation elongation factor activity;0.0130317337562298!GO:0043492;ATPase activity, coupled to movement of substances;0.0130368213044857!GO:0031418;L-ascorbic acid binding;0.0131578791296038!GO:0048037;cofactor binding;0.0131863221386612!GO:0030384;phosphoinositide metabolic process;0.0133582762362587!GO:0044427;chromosomal part;0.0135864271520348!GO:0033673;negative regulation of kinase activity;0.0137340593803174!GO:0006469;negative regulation of protein kinase activity;0.0137340593803174!GO:0030660;Golgi-associated vesicle membrane;0.0142318033039598!GO:0006892;post-Golgi vesicle-mediated transport;0.0145759711175924!GO:0019798;procollagen-proline dioxygenase activity;0.0146490616248705!GO:0031543;peptidyl-proline dioxygenase activity;0.0151300378386732!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0151520917811985!GO:0000339;RNA cap binding;0.0151754224292258!GO:0006402;mRNA catabolic process;0.0152163058372252!GO:0048487;beta-tubulin binding;0.0152615893645503!GO:0000087;M phase of mitotic cell cycle;0.015476108114865!GO:0016860;intramolecular oxidoreductase activity;0.0158940464933306!GO:0015629;actin cytoskeleton;0.0159365527562161!GO:0048468;cell development;0.0159937719161468!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0163648772659295!GO:0005862;muscle thin filament tropomyosin;0.0166374936533251!GO:0007067;mitosis;0.0171876432624064!GO:0030032;lamellipodium biogenesis;0.0173744217537852!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0177317311935042!GO:0030145;manganese ion binding;0.0181119380920725!GO:0005684;U2-dependent spliceosome;0.0181181760150366!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0181231006465149!GO:0006352;transcription initiation;0.018193583056687!GO:0042158;lipoprotein biosynthetic process;0.018614982496544!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.018614982496544!GO:0003756;protein disulfide isomerase activity;0.018614982496544!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.018614982496544!GO:0015631;tubulin binding;0.0186685902741653!GO:0065009;regulation of a molecular function;0.0188319370823966!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0188344859199164!GO:0016251;general RNA polymerase II transcription factor activity;0.0188344859199164!GO:0000059;protein import into nucleus, docking;0.0188344859199164!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0189545515841318!GO:0006354;RNA elongation;0.0191253960366292!GO:0044452;nucleolar part;0.019267177322844!GO:0006506;GPI anchor biosynthetic process;0.0195799599062627!GO:0051348;negative regulation of transferase activity;0.0198961472722415!GO:0006643;membrane lipid metabolic process;0.0200213796116209!GO:0000902;cell morphogenesis;0.0200213796116209!GO:0032989;cellular structure morphogenesis;0.0200213796116209!GO:0007041;lysosomal transport;0.0200497793211402!GO:0003779;actin binding;0.0200497793211402!GO:0008632;apoptotic program;0.0203575657368314!GO:0006497;protein amino acid lipidation;0.0205111584909457!GO:0007160;cell-matrix adhesion;0.021129872665029!GO:0051168;nuclear export;0.021877916205176!GO:0016272;prefoldin complex;0.0219712035054827!GO:0005832;chaperonin-containing T-complex;0.0220784942367989!GO:0035035;histone acetyltransferase binding;0.0221615853995581!GO:0006672;ceramide metabolic process;0.0222138970510127!GO:0051325;interphase;0.0223596491602178!GO:0065007;biological regulation;0.0223697132647471!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228856638385037!GO:0042168;heme metabolic process;0.0231435934728941!GO:0000209;protein polyubiquitination;0.0231692763905085!GO:0003711;transcription elongation regulator activity;0.0232602332053191!GO:0050811;GABA receptor binding;0.0233394119903602!GO:0050681;androgen receptor binding;0.0234329064660378!GO:0006607;NLS-bearing substrate import into nucleus;0.0235389575700092!GO:0008139;nuclear localization sequence binding;0.0235389575700092!GO:0048518;positive regulation of biological process;0.0238809685785748!GO:0031589;cell-substrate adhesion;0.0238948881077165!GO:0030125;clathrin vesicle coat;0.0239148340570596!GO:0030665;clathrin coated vesicle membrane;0.0239148340570596!GO:0005096;GTPase activator activity;0.0243094997612318!GO:0006505;GPI anchor metabolic process;0.0243256964425553!GO:0016125;sterol metabolic process;0.02446954336662!GO:0000096;sulfur amino acid metabolic process;0.0248508086401207!GO:0006595;polyamine metabolic process;0.0249464321689812!GO:0006693;prostaglandin metabolic process;0.0253581033310301!GO:0006692;prostanoid metabolic process;0.0253581033310301!GO:0033559;unsaturated fatty acid metabolic process;0.0255623333338758!GO:0006636;unsaturated fatty acid biosynthetic process;0.0255623333338758!GO:0022403;cell cycle phase;0.0256640452912131!GO:0000049;tRNA binding;0.0280993954791617!GO:0051301;cell division;0.0284961060118485!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0285059466325505!GO:0030508;thiol-disulfide exchange intermediate activity;0.0286749777587633!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0288292024225285!GO:0033043;regulation of organelle organization and biogenesis;0.0288292024225285!GO:0008033;tRNA processing;0.0294234614580751!GO:0030984;kininogen binding;0.0298827715988618!GO:0004213;cathepsin B activity;0.0298827715988618!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0305456409281833!GO:0006767;water-soluble vitamin metabolic process;0.0312759616183087!GO:0032940;secretion by cell;0.0312759616183087!GO:0006739;NADP metabolic process;0.0313449078240807!GO:0030503;regulation of cell redox homeostasis;0.0315321247269846!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0321487104786333!GO:0030659;cytoplasmic vesicle membrane;0.0321487104786333!GO:0030119;AP-type membrane coat adaptor complex;0.0324222998516516!GO:0001872;zymosan binding;0.0328104022674158!GO:0001878;response to yeast;0.0328104022674158!GO:0030518;steroid hormone receptor signaling pathway;0.0330844730456454!GO:0015036;disulfide oxidoreductase activity;0.033314699513622!GO:0007021;tubulin folding;0.0334744141842899!GO:0004287;prolyl oligopeptidase activity;0.0335113347926736!GO:0008147;structural constituent of bone;0.0335525250982617!GO:0009225;nucleotide-sugar metabolic process;0.0337210559195977!GO:0006779;porphyrin biosynthetic process;0.0344597183306619!GO:0033014;tetrapyrrole biosynthetic process;0.0344597183306619!GO:0005586;collagen type III;0.0347265188700054!GO:0008064;regulation of actin polymerization and/or depolymerization;0.035866426503169!GO:0006289;nucleotide-excision repair;0.0365625546670266!GO:0008168;methyltransferase activity;0.0366610075396199!GO:0043065;positive regulation of apoptosis;0.0373747593204939!GO:0004228;gelatinase A activity;0.0377989333739693!GO:0001955;blood vessel maturation;0.0377989333739693!GO:0005801;cis-Golgi network;0.0380481443222738!GO:0005100;Rho GTPase activator activity;0.0380481443222738!GO:0045892;negative regulation of transcription, DNA-dependent;0.0391255862887401!GO:0003684;damaged DNA binding;0.0394973991589405!GO:0051272;positive regulation of cell motility;0.0395511189666574!GO:0040017;positive regulation of locomotion;0.0395511189666574!GO:0046365;monosaccharide catabolic process;0.0407500569667021!GO:0019222;regulation of metabolic process;0.0409790537454495!GO:0005583;fibrillar collagen;0.0412001694025637!GO:0006401;RNA catabolic process;0.0415110096230666!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0416120596041819!GO:0006769;nicotinamide metabolic process;0.0417948508994521!GO:0019318;hexose metabolic process;0.0419989166655143!GO:0006334;nucleosome assembly;0.0422967455174842!GO:0006644;phospholipid metabolic process;0.042417987870025!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0425374296713512!GO:0008538;proteasome activator activity;0.0430067123911114!GO:0005637;nuclear inner membrane;0.0430067123911114!GO:0045893;positive regulation of transcription, DNA-dependent;0.0430133159093974!GO:0043414;biopolymer methylation;0.0435130671159994!GO:0043068;positive regulation of programmed cell death;0.0435668587117565!GO:0016741;transferase activity, transferring one-carbon groups;0.043725572123842!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.04412355799305!GO:0031371;ubiquitin conjugating enzyme complex;0.044679270445859!GO:0005996;monosaccharide metabolic process;0.0447736089687062!GO:0048144;fibroblast proliferation;0.0448472411611666!GO:0048145;regulation of fibroblast proliferation;0.0448472411611666!GO:0007030;Golgi organization and biogenesis;0.0457655246947151!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0459256441073973!GO:0030911;TPR domain binding;0.0460839935597939!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0462214900192097!GO:0044255;cellular lipid metabolic process;0.0477300670898248!GO:0031124;mRNA 3'-end processing;0.0479450269773345!GO:0003923;GPI-anchor transamidase activity;0.0479450269773345!GO:0016255;attachment of GPI anchor to protein;0.0479450269773345!GO:0042765;GPI-anchor transamidase complex;0.0479450269773345!GO:0030199;collagen fibril organization;0.0482671388992209!GO:0022408;negative regulation of cell-cell adhesion;0.0489922238397928!GO:0006733;oxidoreduction coenzyme metabolic process;0.0491919283678194!GO:0044275;cellular carbohydrate catabolic process;0.0492669684445804!GO:0008022;protein C-terminus binding;0.049678495925829 | |||
|sample_id=11751 | |sample_id=11751 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=ATF6:1.68655407959;EN1,2:1.47052647435;SRF:1.46943415745;GZF1:1.33139194163;MYBL2:1.23200533578;EVI1:1.21805642407;NFATC1..3:1.21024857737;GFI1B:1.21003731814;UFEwm:1.18544283236;HES1:1.13644900041;NR1H4:1.08801893165;ALX4:1.08013153106;PRDM1:1.0701575423;RXR{A,B,G}:1.06802893228;MAFB:0.986345188887;FOXL1:0.969982934379;RXRA_VDR{dimer}:0.947829213288;NANOG{mouse}:0.935864045078;ZNF238:0.932407682667;PAX4:0.910015588174;TAL1_TCF{3,4,12}:0.909527371499;ZIC1..3:0.886138079358;HOX{A4,D4}:0.885724111748;IKZF1:0.870183750332;NFE2L1:0.866929339965;XBP1:0.837225477646;HOX{A5,B5}:0.833049856728;SREBF1,2:0.824283413555;STAT2,4,6:0.81931330428;FOX{I1,J2}:0.797952614755;KLF4:0.795673736983;EBF1:0.789463335868;PAX5:0.787334606882;TFCP2:0.780068889973;TEAD1:0.730252229371;GLI1..3:0.699350967145;ESR1:0.636641007826;AIRE:0.62761950821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.624432708684;SMAD1..7,9:0.621846692911;PAX1,9:0.603502848915;TLX1..3_NFIC{dimer}:0.59290361299;POU3F1..4:0.578134295522;LHX3,4:0.57542492608;CDC5L:0.574662848847;NKX2-2,8:0.557871105147;DBP:0.542883854806;GTF2I:0.497847913411;FOXO1,3,4:0.49366698076;MTE{core}:0.492891960141;bHLH_family:0.472958780175;NKX3-2:0.471083475865;NKX2-1,4:0.452464911272;GTF2A1,2:0.445739613188;HLF:0.445680745081;AHR_ARNT_ARNT2:0.427858672066;ZNF384:0.422030565858;TEF:0.420948655316;RFX1:0.412572134869;MEF2{A,B,C,D}:0.409891586756;HSF1,2:0.382048995411;IRF1,2:0.379690946489;HAND1,2:0.366789644897;TBP:0.350434036421;NR6A1:0.33726651001;NFE2L2:0.336661564692;YY1:0.326199447791;TP53:0.321139751623;BPTF:0.320172457932;NR3C1:0.313257378051;ZBTB6:0.303843445904;PATZ1:0.291491229412;GATA4:0.285873670017;STAT1,3:0.281168673454;ZNF423:0.278535217317;MZF1:0.260974169786;NKX6-1,2:0.252662912419;NKX3-1:0.252632757563;EGR1..3:0.237278361649;RUNX1..3:0.228561954422;RREB1:0.215567954019;MAZ:0.204439744178;SOX17:0.195461267142;ARID5B:0.19514121516;ELK1,4_GABP{A,B1}:0.194053758773;FOSL2:0.191622580896;HIF1A:0.178832617419;TFAP4:0.159594158912;BACH2:0.150201633311;FOS_FOS{B,L1}_JUN{B,D}:0.146453735182;RFX2..5_RFXANK_RFXAP:0.143739979252;PAX8:0.135618558138;NFIX:0.127817563334;HMX1:0.123716053325;NHLH1,2:0.0992485846931;TFAP2{A,C}:0.0894484468626;HIC1:0.0816080052256;NFE2:0.0560929659689;STAT5{A,B}:0.051799557346;JUN:0.0297179550025;ZNF148:0.0183365819876;PRRX1,2:0.0102214750791;HBP1_HMGB_SSRP1_UBTF:0.00738539387198;MYFfamily:0.00418706959644;NKX2-3_NKX2-5:-0.000455494925812;ZBTB16:-0.000568544757316;NRF1:-0.00099535565055;TBX4,5:-0.00453538790266;XCPE1{core}:-0.00984672018998;ATF2:-0.0100126596789;TFAP2B:-0.0193368833123;HMGA1,2:-0.0263438021256;GFI1:-0.0270740848036;ATF5_CREB3:-0.0275984807891;ONECUT1,2:-0.0313111291567;HNF1A:-0.0323315122554;EP300:-0.0509132240349;ESRRA:-0.0757016582964;SPZ1:-0.0828868957872;CREB1:-0.0883924209759;GCM1,2:-0.0907096588822;ZNF143:-0.0973419387537;SP1:-0.102408284878;AR:-0.173322101153;ZFP161:-0.195598590695;POU6F1:-0.19801650734;ATF4:-0.200574331624;NFIL3:-0.203057533543;IRF7:-0.204043645628;HOX{A6,A7,B6,B7}:-0.209190264011;FOXM1:-0.210350004056;NR5A1,2:-0.216134643105;PAX2:-0.218800351031;FOXD3:-0.262847876721;TLX2:-0.2740177747;REST:-0.288143073131;CRX:-0.310977687307;RORA:-0.32736661711;MTF1:-0.33864871255;MED-1{core}:-0.340966780166;TGIF1:-0.34366291695;DMAP1_NCOR{1,2}_SMARC:-0.345794257202;CEBPA,B_DDIT3:-0.366107878653;NFKB1_REL_RELA:-0.369060367771;HNF4A_NR2F1,2:-0.374545993274;PBX1:-0.399370274404;LEF1_TCF7_TCF7L1,2:-0.402757854244;FOXN1:-0.426818530694;FOX{D1,D2}:-0.476500216725;VSX1,2:-0.477395933959;PAX6:-0.508149530188;CDX1,2,4:-0.510406643965;FOXP3:-0.512391186835;FOXP1:-0.523554149206;SPI1:-0.546804847803;LMO2:-0.555829242138;BREu{core}:-0.56350186759;MYB:-0.587497377461;SOX5:-0.591453125975;ETS1,2:-0.597757550796;SPIB:-0.598815893052;PAX3,7:-0.604861335841;SOX2:-0.608179135492;FOXA2:-0.615894348576;ELF1,2,4:-0.629525391641;FOX{F1,F2,J1}:-0.676249915865;TOPORS:-0.710205001341;ADNP_IRX_SIX_ZHX:-0.725707239073;MYOD1:-0.730812273674;TFDP1:-0.739182576124;PPARG:-0.75352172049;SNAI1..3:-0.779285151685;RBPJ:-0.784014344126;NFY{A,B,C}:-0.785623594514;POU1F1:-0.862285834833;PDX1:-0.874599228542;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.876609411364;POU2F1..3:-0.888147342157;GATA6:-0.897520256051;IKZF2:-0.897539728149;E2F1..5:-0.915270644347;OCT4_SOX2{dimer}:-0.919935101597;ZEB1:-0.97812758529;CUX2:-0.991717709307;POU5F1:-1.02987694471;SOX{8,9,10}:-1.07885409807;T:-1.15476085801;PITX1..3:-1.16746594369;FOXQ1:-1.29927888884;HOXA9_MEIS1:-1.36250706018;ALX1:-1.37531826601;NANOG:-1.74002939085 | |top_motifs=ATF6:1.68655407959;EN1,2:1.47052647435;SRF:1.46943415745;GZF1:1.33139194163;MYBL2:1.23200533578;EVI1:1.21805642407;NFATC1..3:1.21024857737;GFI1B:1.21003731814;UFEwm:1.18544283236;HES1:1.13644900041;NR1H4:1.08801893165;ALX4:1.08013153106;PRDM1:1.0701575423;RXR{A,B,G}:1.06802893228;MAFB:0.986345188887;FOXL1:0.969982934379;RXRA_VDR{dimer}:0.947829213288;NANOG{mouse}:0.935864045078;ZNF238:0.932407682667;PAX4:0.910015588174;TAL1_TCF{3,4,12}:0.909527371499;ZIC1..3:0.886138079358;HOX{A4,D4}:0.885724111748;IKZF1:0.870183750332;NFE2L1:0.866929339965;XBP1:0.837225477646;HOX{A5,B5}:0.833049856728;SREBF1,2:0.824283413555;STAT2,4,6:0.81931330428;FOX{I1,J2}:0.797952614755;KLF4:0.795673736983;EBF1:0.789463335868;PAX5:0.787334606882;TFCP2:0.780068889973;TEAD1:0.730252229371;GLI1..3:0.699350967145;ESR1:0.636641007826;AIRE:0.62761950821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.624432708684;SMAD1..7,9:0.621846692911;PAX1,9:0.603502848915;TLX1..3_NFIC{dimer}:0.59290361299;POU3F1..4:0.578134295522;LHX3,4:0.57542492608;CDC5L:0.574662848847;NKX2-2,8:0.557871105147;DBP:0.542883854806;GTF2I:0.497847913411;FOXO1,3,4:0.49366698076;MTE{core}:0.492891960141;bHLH_family:0.472958780175;NKX3-2:0.471083475865;NKX2-1,4:0.452464911272;GTF2A1,2:0.445739613188;HLF:0.445680745081;AHR_ARNT_ARNT2:0.427858672066;ZNF384:0.422030565858;TEF:0.420948655316;RFX1:0.412572134869;MEF2{A,B,C,D}:0.409891586756;HSF1,2:0.382048995411;IRF1,2:0.379690946489;HAND1,2:0.366789644897;TBP:0.350434036421;NR6A1:0.33726651001;NFE2L2:0.336661564692;YY1:0.326199447791;TP53:0.321139751623;BPTF:0.320172457932;NR3C1:0.313257378051;ZBTB6:0.303843445904;PATZ1:0.291491229412;GATA4:0.285873670017;STAT1,3:0.281168673454;ZNF423:0.278535217317;MZF1:0.260974169786;NKX6-1,2:0.252662912419;NKX3-1:0.252632757563;EGR1..3:0.237278361649;RUNX1..3:0.228561954422;RREB1:0.215567954019;MAZ:0.204439744178;SOX17:0.195461267142;ARID5B:0.19514121516;ELK1,4_GABP{A,B1}:0.194053758773;FOSL2:0.191622580896;HIF1A:0.178832617419;TFAP4:0.159594158912;BACH2:0.150201633311;FOS_FOS{B,L1}_JUN{B,D}:0.146453735182;RFX2..5_RFXANK_RFXAP:0.143739979252;PAX8:0.135618558138;NFIX:0.127817563334;HMX1:0.123716053325;NHLH1,2:0.0992485846931;TFAP2{A,C}:0.0894484468626;HIC1:0.0816080052256;NFE2:0.0560929659689;STAT5{A,B}:0.051799557346;JUN:0.0297179550025;ZNF148:0.0183365819876;PRRX1,2:0.0102214750791;HBP1_HMGB_SSRP1_UBTF:0.00738539387198;MYFfamily:0.00418706959644;NKX2-3_NKX2-5:-0.000455494925812;ZBTB16:-0.000568544757316;NRF1:-0.00099535565055;TBX4,5:-0.00453538790266;XCPE1{core}:-0.00984672018998;ATF2:-0.0100126596789;TFAP2B:-0.0193368833123;HMGA1,2:-0.0263438021256;GFI1:-0.0270740848036;ATF5_CREB3:-0.0275984807891;ONECUT1,2:-0.0313111291567;HNF1A:-0.0323315122554;EP300:-0.0509132240349;ESRRA:-0.0757016582964;SPZ1:-0.0828868957872;CREB1:-0.0883924209759;GCM1,2:-0.0907096588822;ZNF143:-0.0973419387537;SP1:-0.102408284878;AR:-0.173322101153;ZFP161:-0.195598590695;POU6F1:-0.19801650734;ATF4:-0.200574331624;NFIL3:-0.203057533543;IRF7:-0.204043645628;HOX{A6,A7,B6,B7}:-0.209190264011;FOXM1:-0.210350004056;NR5A1,2:-0.216134643105;PAX2:-0.218800351031;FOXD3:-0.262847876721;TLX2:-0.2740177747;REST:-0.288143073131;CRX:-0.310977687307;RORA:-0.32736661711;MTF1:-0.33864871255;MED-1{core}:-0.340966780166;TGIF1:-0.34366291695;DMAP1_NCOR{1,2}_SMARC:-0.345794257202;CEBPA,B_DDIT3:-0.366107878653;NFKB1_REL_RELA:-0.369060367771;HNF4A_NR2F1,2:-0.374545993274;PBX1:-0.399370274404;LEF1_TCF7_TCF7L1,2:-0.402757854244;FOXN1:-0.426818530694;FOX{D1,D2}:-0.476500216725;VSX1,2:-0.477395933959;PAX6:-0.508149530188;CDX1,2,4:-0.510406643965;FOXP3:-0.512391186835;FOXP1:-0.523554149206;SPI1:-0.546804847803;LMO2:-0.555829242138;BREu{core}:-0.56350186759;MYB:-0.587497377461;SOX5:-0.591453125975;ETS1,2:-0.597757550796;SPIB:-0.598815893052;PAX3,7:-0.604861335841;SOX2:-0.608179135492;FOXA2:-0.615894348576;ELF1,2,4:-0.629525391641;FOX{F1,F2,J1}:-0.676249915865;TOPORS:-0.710205001341;ADNP_IRX_SIX_ZHX:-0.725707239073;MYOD1:-0.730812273674;TFDP1:-0.739182576124;PPARG:-0.75352172049;SNAI1..3:-0.779285151685;RBPJ:-0.784014344126;NFY{A,B,C}:-0.785623594514;POU1F1:-0.862285834833;PDX1:-0.874599228542;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.876609411364;POU2F1..3:-0.888147342157;GATA6:-0.897520256051;IKZF2:-0.897539728149;E2F1..5:-0.915270644347;OCT4_SOX2{dimer}:-0.919935101597;ZEB1:-0.97812758529;CUX2:-0.991717709307;POU5F1:-1.02987694471;SOX{8,9,10}:-1.07885409807;T:-1.15476085801;PITX1..3:-1.16746594369;FOXQ1:-1.29927888884;HOXA9_MEIS1:-1.36250706018;ALX1:-1.37531826601;NANOG:-1.74002939085 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11751-123G5;search_select_hide=table117:FF:11751-123G5 | |||
}} | }} | ||
Latest revision as of 18:17, 4 June 2020
| Name: | mesenchymal precursor cell - bone marrow, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12367 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12367
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12367
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.83 |
| 10 | 10 | 0.519 |
| 100 | 100 | 0.819 |
| 101 | 101 | 0.578 |
| 102 | 102 | 0.00331 |
| 103 | 103 | 0.352 |
| 104 | 104 | 0.536 |
| 105 | 105 | 0.278 |
| 106 | 106 | 0.838 |
| 107 | 107 | 0.878 |
| 108 | 108 | 0.613 |
| 109 | 109 | 0.829 |
| 11 | 11 | 0.96 |
| 110 | 110 | 0.237 |
| 111 | 111 | 0.658 |
| 112 | 112 | 0.746 |
| 113 | 113 | 0.00403 |
| 114 | 114 | 0.277 |
| 115 | 115 | 0.369 |
| 116 | 116 | 0.275 |
| 117 | 117 | 0.751 |
| 118 | 118 | 0.412 |
| 119 | 119 | 0.936 |
| 12 | 12 | 0.266 |
| 120 | 120 | 0.881 |
| 121 | 121 | 0.312 |
| 122 | 122 | 0.0347 |
| 123 | 123 | 2.31403e-5 |
| 124 | 124 | 0.451 |
| 125 | 125 | 0.961 |
| 126 | 126 | 0.53 |
| 127 | 127 | 0.722 |
| 128 | 128 | 0.472 |
| 129 | 129 | 0.726 |
| 13 | 13 | 0.702 |
| 130 | 130 | 0.686 |
| 131 | 131 | 0.624 |
| 132 | 132 | 0.463 |
| 133 | 133 | 0.889 |
| 134 | 134 | 0.397 |
| 135 | 135 | 0.776 |
| 136 | 136 | 0.743 |
| 137 | 137 | 0.56 |
| 138 | 138 | 0.424 |
| 139 | 139 | 0.737 |
| 14 | 14 | 0.62 |
| 140 | 140 | 0.886 |
| 141 | 141 | 0.101 |
| 142 | 142 | 0.272 |
| 143 | 143 | 0.872 |
| 144 | 144 | 0.219 |
| 145 | 145 | 0.762 |
| 146 | 146 | 0.588 |
| 147 | 147 | 0.0233 |
| 148 | 148 | 0.933 |
| 149 | 149 | 0.134 |
| 15 | 15 | 0.524 |
| 150 | 150 | 0.868 |
| 151 | 151 | 0.83 |
| 152 | 152 | 0.536 |
| 153 | 153 | 0.419 |
| 154 | 154 | 0.68 |
| 155 | 155 | 0.00563 |
| 156 | 156 | 0.12 |
| 157 | 157 | 0.36 |
| 158 | 158 | 0.00555 |
| 159 | 159 | 0.146 |
| 16 | 16 | 0.0537 |
| 160 | 160 | 0.638 |
| 161 | 161 | 0.615 |
| 162 | 162 | 0.42 |
| 163 | 163 | 0.865 |
| 164 | 164 | 0.351 |
| 165 | 165 | 0.655 |
| 166 | 166 | 0.00564 |
| 167 | 167 | 0.278 |
| 168 | 168 | 0.406 |
| 169 | 169 | 0.121 |
| 17 | 17 | 0.917 |
| 18 | 18 | 0.413 |
| 19 | 19 | 0.00399 |
| 2 | 2 | 0.972 |
| 20 | 20 | 0.852 |
| 21 | 21 | 0.563 |
| 22 | 22 | 0.322 |
| 23 | 23 | 0.492 |
| 24 | 24 | 0.126 |
| 25 | 25 | 0.189 |
| 26 | 26 | 0.622 |
| 27 | 27 | 0.732 |
| 28 | 28 | 0.492 |
| 29 | 29 | 0.219 |
| 3 | 3 | 0.697 |
| 30 | 30 | 0.337 |
| 31 | 31 | 0.632 |
| 32 | 32 | 4.0196e-13 |
| 33 | 33 | 0.713 |
| 34 | 34 | 0.391 |
| 35 | 35 | 0.67 |
| 36 | 36 | 0.0479 |
| 37 | 37 | 0.0216 |
| 38 | 38 | 0.237 |
| 39 | 39 | 0.216 |
| 4 | 4 | 0.0138 |
| 40 | 40 | 0.0303 |
| 41 | 41 | 0.188 |
| 42 | 42 | 0.341 |
| 43 | 43 | 0.758 |
| 44 | 44 | 0.519 |
| 45 | 45 | 0.991 |
| 46 | 46 | 0.633 |
| 47 | 47 | 0.0976 |
| 48 | 48 | 0.341 |
| 49 | 49 | 0.227 |
| 5 | 5 | 0.668 |
| 50 | 50 | 0.428 |
| 51 | 51 | 0.415 |
| 52 | 52 | 0.958 |
| 53 | 53 | 0.0304 |
| 54 | 54 | 0.635 |
| 55 | 55 | 0.0421 |
| 56 | 56 | 0.904 |
| 57 | 57 | 0.467 |
| 58 | 58 | 0.102 |
| 59 | 59 | 0.341 |
| 6 | 6 | 0.261 |
| 60 | 60 | 0.812 |
| 61 | 61 | 0.651 |
| 62 | 62 | 0.179 |
| 63 | 63 | 0.398 |
| 64 | 64 | 0.431 |
| 65 | 65 | 0.975 |
| 66 | 66 | 0.154 |
| 67 | 67 | 0.987 |
| 68 | 68 | 0.464 |
| 69 | 69 | 0.677 |
| 7 | 7 | 0.226 |
| 70 | 70 | 0.986 |
| 71 | 71 | 0.843 |
| 72 | 72 | 0.923 |
| 73 | 73 | 0.0762 |
| 74 | 74 | 0.128 |
| 75 | 75 | 0.919 |
| 76 | 76 | 0.458 |
| 77 | 77 | 0.0645 |
| 78 | 78 | 0.00275 |
| 79 | 79 | 0.003 |
| 8 | 8 | 0.697 |
| 80 | 80 | 0.379 |
| 81 | 81 | 0.923 |
| 82 | 82 | 0.747 |
| 83 | 83 | 0.894 |
| 84 | 84 | 0.805 |
| 85 | 85 | 0.908 |
| 86 | 86 | 0.229 |
| 87 | 87 | 0.698 |
| 88 | 88 | 0.234 |
| 89 | 89 | 0.0273 |
| 9 | 9 | 0.609 |
| 90 | 90 | 0.518 |
| 91 | 91 | 0.36 |
| 92 | 92 | 0.363 |
| 93 | 93 | 0.884 |
| 94 | 94 | 0.978 |
| 95 | 95 | 0.835 |
| 96 | 96 | 0.501 |
| 97 | 97 | 0.244 |
| 98 | 98 | 0.506 |
| 99 | 99 | 0.0359 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12367
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000269 human mesenchymal precursor cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
