FF:12234-129G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005806 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008088;DRR008960;DRZ000385;DRZ001770;DRZ011735;DRZ013120 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000266 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12234-129G2 | |id=FF:12234-129G2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000266 | ||
|is_obsolete= | |||
|library_id=CNhs12562 | |||
|library_id_phase_based=2:CNhs12562 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12234 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12234 | |||
|name=mature adipocyte, donor4 | |name=mature adipocyte, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12562,LSID921,release012,COMPLETED | |profile_hcage=CNhs12562,LSID921,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.109496760406267,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.194797641280496,0,0.12315641958565,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.12315641958565,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061578209792825,0,0,0,0,0,0,0,0,0,0.0364389774112994,0.149392222802722,0,0,0.373714326681939,0.218993520812533,0.0251210683479438,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0855724646580635,0,0,0,-0.175213663176675,-0.35193433280858,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.12315641958565,0,0,0.0251210683479438,0,0.218993520812533,0,0,0.12315641958565,0,0,0,0,0,0,-0.0281853544730319,0.0194635325471767,-0.350929799166358,-0.143515142523472,0.061578209792825,0,0.011908629489874,0,0.559066061945441,0,0,0,0,0,0,0,-0.128119866952565,0,0.313479565571734,0,0,0.0263283569153641,0,0.0429529287089745,-0.0864787100858748,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.343762057052479,0,0.176578533156461,-0.0827201683234173,0,0.307218924411907,-0.04680465889238,0,0,0,-0.306031041619193,-0.654486796231839,0,0,-0.060201641959049,0.564127415089088,0,0,1.00001107693099,0,0.592285042282478,-0.00629303255157705,0,-0.0832080745736057,0,0,0,0,0,0,0,0,0,0,0,0.548061712791555,-0.0295305797287669,-0.0304099808375785,0,0,-0.0320802029816301,0.410724976739427,0,0.00348103580642067,1.3098839343732,-0.0532779963466566,0.150691653889083,0.545993532290796,0,0.328924780292299,-0.010199315716213,-0.172784194307897,0.0364389774112994,-0.0242454297854883,0.406709225921547,0,0.0375110336602316,0.309786796123178,-0.0244509691935277,0.0228134806909799,-0.0876379898677349,-0.435809164250192,-0.325265560543007,0,0,0.125153410418316,0.0304555567994835,0,0.12315641958565,-0.271121193664241,0.172752995127393,-0.0275250321035767,0.155735853608067,0.116560660763041,-0.00637916035204555,0.982232592068994,0.139254492574799,0,0.167894909273463,0,0.218993520812533,0.11926400317115,-0.0401677886803739,0.0924633256915662,-0.09795646494727,-0.00401867345667381,0.394397970987908,-0.0683442610773682,0,-0.250088593983186,-0.140549230462991,0,0.363892117161049,-0.28131921392121,0,0,-0.242163407587497,0,0,-0.0110659845823624,0.629907478748612,-0.0138620407430123,0,0.0145956547157543,0,0.220152003278755,0,0.103927197042367,0.297458016950202,0.0351518350522375,0.266335892483752,0,0.349926908755999,-0.399203851997911,0.197541781641217,0.298784445605445,-0.0584468268118252,0.549035192640648,0.270470124823559,0.306813393534092,0.526450149312902,0.0217918050530115,0.0350295871103625,0.0505421319058614,-0.0879454064814672,-0.161628423390115,0,-0.0932472985083697,0.12315641958565,0.419720897169249,0,0.0159039583934637,0.0563904095419865,-0.407614072811793,0.638500716881085,1.13730228103923,0.165968643870797,0,-0.213275170789843,1.37890067510655,0,-0.0608002899090451,0,0,0.0686264374778932,-0.333803849351534,0.345629898986813,-0.0774112468863695,0,0.088295274409232,0,0,0.206088043523186,-0.235476037764389,0,-0.432035078618461,-0.609202914213396,-0.481059621609644,-0.115971073434934,0,0,-0.224201188495761,0,1.06039275209735,0.609180878309642,0.1059247713734,-0.496626904372983,-0.0343328206742232,0.047153195693914,0.110370711358277,0,0,0.243971383531788,0.747428653363878,0.131884095832185,0,0,-0.188303086805998,-0.116628112990133,0,0,0,-0.082421685490206,0,0.0641999086002941,0,0,0,0,0,-0.203017729001048,0.0090587869446011,0.297458016950202,-0.729390977642577,0,0,0,0,0,0.112859310274913,0.12315641958565,0,0.863915695390326,-0.0405793422855208,-0.12301741567642,0,0,0,0,0.0817346143967274,0.0157569587178087,0,-0.131862706497632,0.218993520812533,0.331690201559488,0,0,-0.0861409897892114,0,0,0,0.236176028927539,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.322798568295281,0,0,-0.268038056225331,0,0.0647747350503531,-0.0815818795468414,0,0.177789482342727,-0.383790383335475,-1.09062681983593,0,0,0.0361108851603145,0,0,0.360859861333469,-0.0823702229656663,0,0.237300992935251,0,0,0,0,0,0.747428653363878,0.258037545455322,0,0,0,0,0,0,0,0,0,0,0,-0.403880342383805,0.0309323629271398,0.218993520812533,0,0,0,0,0,0,-0.0241060230789031,-0.231644415873665,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-1.06381282353093,0,0,0,0,0,0,0,-0.15167687862044,0,0,0,0,1.04576635781096,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0.12315641958565,0,0,0.0271970122120633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.539235409615803,0,0.00694618996035257,-0.153558547588432,0,0,0.0469046783396787,0,0,0,0,0,0.061578209792825,0.030237785764298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0265939073092802,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.785994899329407,0,0,0,0,0,0,-0.0772272659082278,0.110048011529166,0.126379465855052,0,0,0,0.00719263731037,0,0,0,0.12315641958565,-0.0667773874189013,0.12315641958565,0,0,0,0,0,0,0,0.12315641958565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12315641958565,0,0,0,0,0,0,0.218993520812533,0.0275668465174086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.701426056490956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12315641958565,0,-0.282272447364744,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12315641958565,0.142736608478861,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0945175607786715,0,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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=4.9 | |rna_weight_ug=4.9 | ||
|sample_age=28 | |sample_age=28 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.00280165723483e-211!GO:0005737;cytoplasm;1.53848163311159e-183!GO:0043231;intracellular membrane-bound organelle;5.60241649750583e-166!GO:0043227;membrane-bound organelle;5.60241649750583e-166!GO:0043226;organelle;2.81091909668047e-159!GO:0043229;intracellular organelle;7.01562553154898e-159!GO:0044444;cytoplasmic part;2.58894562769333e-134!GO:0044422;organelle part;1.85296064345587e-95!GO:0044446;intracellular organelle part;1.49422326668964e-94!GO:0005739;mitochondrion;2.54741700007549e-83!GO:0044237;cellular metabolic process;1.96305953424934e-78!GO:0044238;primary metabolic process;3.42637897661665e-75!GO:0005515;protein binding;4.45133278528471e-73!GO:0032991;macromolecular complex;4.95293334019646e-68!GO:0043170;macromolecule metabolic process;3.95086325027929e-64!GO:0043233;organelle lumen;3.83896891294583e-60!GO:0031974;membrane-enclosed lumen;3.83896891294583e-60!GO:0044429;mitochondrial part;9.36210069490206e-58!GO:0030529;ribonucleoprotein complex;4.33234044306844e-57!GO:0005634;nucleus;2.3483278749699e-53!GO:0003723;RNA binding;1.99535684988025e-50!GO:0031090;organelle membrane;4.3974541783452e-50!GO:0044428;nuclear part;4.5976589840917e-49!GO:0031967;organelle envelope;7.43554588073113e-45!GO:0031975;envelope;1.4077152014939e-44!GO:0019538;protein metabolic process;3.88281384370809e-40!GO:0015031;protein transport;6.82523484884629e-39!GO:0033036;macromolecule localization;9.5250021528656e-39!GO:0016043;cellular component organization and biogenesis;4.76617888488988e-38!GO:0005740;mitochondrial envelope;4.76617888488988e-38!GO:0031966;mitochondrial membrane;4.71988441417115e-37!GO:0045184;establishment of protein localization;1.4318160222902e-36!GO:0044260;cellular macromolecule metabolic process;5.28117071460554e-36!GO:0006412;translation;7.51680182648862e-36!GO:0008104;protein localization;7.67467850627938e-36!GO:0005829;cytosol;1.48109187501941e-35!GO:0005840;ribosome;2.09815814510957e-35!GO:0043234;protein complex;5.58183383878119e-35!GO:0044267;cellular protein metabolic process;9.99133666499697e-35!GO:0009058;biosynthetic process;8.53106486321431e-34!GO:0019866;organelle inner membrane;2.19948178124583e-33!GO:0043283;biopolymer metabolic process;3.85147563543893e-33!GO:0010467;gene expression;5.08172743528654e-33!GO:0044249;cellular biosynthetic process;1.47842643209863e-32!GO:0005743;mitochondrial inner membrane;1.88325429538137e-32!GO:0031981;nuclear lumen;1.13469577659758e-31!GO:0046907;intracellular transport;3.11755120407947e-31!GO:0003735;structural constituent of ribosome;2.99067552527974e-29!GO:0006396;RNA processing;6.20584553442532e-29!GO:0016071;mRNA metabolic process;9.27396102615686e-29!GO:0009059;macromolecule biosynthetic process;4.7122526598862e-28!GO:0006886;intracellular protein transport;2.2254020689464e-27!GO:0033279;ribosomal subunit;5.50335558904479e-27!GO:0008380;RNA splicing;8.17173955736038e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.49104702861284e-25!GO:0031980;mitochondrial lumen;1.80773538098339e-24!GO:0005759;mitochondrial matrix;1.80773538098339e-24!GO:0006397;mRNA processing;2.40718598564923e-23!GO:0065003;macromolecular complex assembly;4.04995212119617e-23!GO:0044455;mitochondrial membrane part;2.72197368160118e-22!GO:0006119;oxidative phosphorylation;9.28426723545428e-22!GO:0005654;nucleoplasm;2.37109402543079e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.6189172812127e-20!GO:0022607;cellular component assembly;9.7748624477959e-20!GO:0000166;nucleotide binding;5.25433206640709e-19!GO:0051649;establishment of cellular localization;6.17806003057168e-19!GO:0051186;cofactor metabolic process;6.46749420211872e-19!GO:0051641;cellular localization;6.46749420211872e-19!GO:0005746;mitochondrial respiratory chain;8.07035810949769e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.09789240200864e-18!GO:0016874;ligase activity;1.79758173783751e-18!GO:0044451;nucleoplasm part;1.14526842733052e-17!GO:0005681;spliceosome;1.14526842733052e-17!GO:0005783;endoplasmic reticulum;1.99796704195813e-17!GO:0006996;organelle organization and biogenesis;2.36847041654488e-17!GO:0044248;cellular catabolic process;3.19274476292809e-17!GO:0008134;transcription factor binding;4.80918422143591e-17!GO:0022618;protein-RNA complex assembly;6.69333674414073e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;7.05070884279801e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.05750173930017e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.69863606589792e-16!GO:0006512;ubiquitin cycle;1.72442808700465e-16!GO:0019941;modification-dependent protein catabolic process;1.73647177579097e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.73647177579097e-16!GO:0044265;cellular macromolecule catabolic process;1.75355001434555e-16!GO:0044257;cellular protein catabolic process;2.60184154561247e-16!GO:0012505;endomembrane system;5.96820452538181e-16!GO:0016070;RNA metabolic process;6.54313460308304e-16!GO:0006457;protein folding;7.92506466284562e-16!GO:0003676;nucleic acid binding;1.3949474182703e-15!GO:0043285;biopolymer catabolic process;1.55754620267145e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.64839028611307e-15!GO:0003954;NADH dehydrogenase activity;2.64839028611307e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.64839028611307e-15!GO:0006732;coenzyme metabolic process;3.62787200590833e-15!GO:0006091;generation of precursor metabolites and energy;6.03449241644871e-15!GO:0016192;vesicle-mediated transport;6.11377223548064e-15!GO:0015935;small ribosomal subunit;7.07839483883003e-15!GO:0008135;translation factor activity, nucleic acid binding;8.22955258078288e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10797909162063e-14!GO:0006605;protein targeting;1.34250197651309e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.34934122767415e-14!GO:0044445;cytosolic part;1.61727326361069e-14!GO:0016462;pyrophosphatase activity;1.86678145090329e-14!GO:0009057;macromolecule catabolic process;2.61568975077072e-14!GO:0016491;oxidoreductase activity;4.55298955488381e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69892384182023e-14!GO:0042773;ATP synthesis coupled electron transport;5.69892384182023e-14!GO:0030163;protein catabolic process;6.59858124794532e-14!GO:0048770;pigment granule;9.90275805940303e-14!GO:0042470;melanosome;9.90275805940303e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.03411050230515e-13!GO:0045271;respiratory chain complex I;1.03411050230515e-13!GO:0005747;mitochondrial respiratory chain complex I;1.03411050230515e-13!GO:0017111;nucleoside-triphosphatase activity;1.06990480137172e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.91245452222974e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.27418516875896e-13!GO:0015934;large ribosomal subunit;4.35124912597643e-13!GO:0009055;electron carrier activity;5.45035982157588e-13!GO:0044432;endoplasmic reticulum part;1.5915023470079e-12!GO:0048523;negative regulation of cellular process;1.96190277780053e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.04865970734366e-12!GO:0017076;purine nucleotide binding;2.25152370321589e-12!GO:0051082;unfolded protein binding;2.389696551095e-12!GO:0012501;programmed cell death;2.83094930337053e-12!GO:0006413;translational initiation;5.14636343540179e-12!GO:0006915;apoptosis;5.99802240543816e-12!GO:0008219;cell death;6.48700882358498e-12!GO:0016265;death;6.48700882358498e-12!GO:0005761;mitochondrial ribosome;6.80719484742425e-12!GO:0000313;organellar ribosome;6.80719484742425e-12!GO:0005730;nucleolus;7.37922423042053e-12!GO:0043228;non-membrane-bound organelle;1.38930000656904e-11!GO:0043232;intracellular non-membrane-bound organelle;1.38930000656904e-11!GO:0050794;regulation of cellular process;1.58984668317445e-11!GO:0045333;cellular respiration;1.90011774382041e-11!GO:0003743;translation initiation factor activity;2.08442347355264e-11!GO:0005794;Golgi apparatus;2.10779705509426e-11!GO:0009060;aerobic respiration;2.50080384160542e-11!GO:0009056;catabolic process;2.60721214528513e-11!GO:0005768;endosome;3.52905584187341e-11!GO:0043412;biopolymer modification;3.64668861160866e-11!GO:0015980;energy derivation by oxidation of organic compounds;3.94081781282957e-11!GO:0048193;Golgi vesicle transport;4.13361626907337e-11!GO:0006446;regulation of translational initiation;4.67297816293091e-11!GO:0006366;transcription from RNA polymerase II promoter;5.92674883100984e-11!GO:0032553;ribonucleotide binding;8.04382518343047e-11!GO:0032555;purine ribonucleotide binding;8.04382518343047e-11!GO:0048519;negative regulation of biological process;1.12767275027374e-10!GO:0043687;post-translational protein modification;1.32833906732932e-10!GO:0016604;nuclear body;1.39776108844369e-10!GO:0006913;nucleocytoplasmic transport;2.24199992355534e-10!GO:0006464;protein modification process;2.62492118504472e-10!GO:0051169;nuclear transport;4.87677106781783e-10!GO:0006259;DNA metabolic process;5.5612069373126e-10!GO:0003712;transcription cofactor activity;5.90164694955306e-10!GO:0008565;protein transporter activity;6.10202372438717e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.28451778380723e-10!GO:0016607;nuclear speck;1.15604538729916e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.34926828342993e-09!GO:0050789;regulation of biological process;1.41020413054138e-09!GO:0051187;cofactor catabolic process;1.41020413054138e-09!GO:0005789;endoplasmic reticulum membrane;1.48489153475588e-09!GO:0006084;acetyl-CoA metabolic process;1.53587357471849e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56324643692041e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.90642771293148e-09!GO:0006099;tricarboxylic acid cycle;2.06293051751766e-09!GO:0046356;acetyl-CoA catabolic process;2.06293051751766e-09!GO:0009109;coenzyme catabolic process;2.75635416031133e-09!GO:0005635;nuclear envelope;3.17920726862468e-09!GO:0006461;protein complex assembly;4.69218456336725e-09!GO:0019787;small conjugating protein ligase activity;4.95282195434145e-09!GO:0017038;protein import;5.22111763475152e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;5.9019036880658e-09!GO:0000375;RNA splicing, via transesterification reactions;5.9019036880658e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.9019036880658e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.08086853219863e-09!GO:0008639;small protein conjugating enzyme activity;6.60811577221214e-09!GO:0004842;ubiquitin-protein ligase activity;1.0867526501688e-08!GO:0030554;adenyl nucleotide binding;1.74874514102077e-08!GO:0031965;nuclear membrane;2.5893619119736e-08!GO:0043069;negative regulation of programmed cell death;2.98575826839121e-08!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;3.22692430829215e-08!GO:0006082;organic acid metabolic process;3.27198943582993e-08!GO:0019752;carboxylic acid metabolic process;3.6563587563732e-08!GO:0016881;acid-amino acid ligase activity;5.21413283787877e-08!GO:0043066;negative regulation of apoptosis;5.48445759979399e-08!GO:0050662;coenzyme binding;6.47813155466345e-08!GO:0016564;transcription repressor activity;7.04760555458792e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.59475178659814e-08!GO:0051188;cofactor biosynthetic process;8.49491674522457e-08!GO:0005770;late endosome;1.27115226999619e-07!GO:0043067;regulation of programmed cell death;1.64079343989416e-07!GO:0042981;regulation of apoptosis;1.66074940438001e-07!GO:0006793;phosphorus metabolic process;1.92692156543841e-07!GO:0006796;phosphate metabolic process;1.92692156543841e-07!GO:0005741;mitochondrial outer membrane;2.40887322444883e-07!GO:0051246;regulation of protein metabolic process;2.56390058742627e-07!GO:0044440;endosomal part;2.97249701432087e-07!GO:0010008;endosome membrane;2.97249701432087e-07!GO:0015986;ATP synthesis coupled proton transport;3.17452776440833e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.17452776440833e-07!GO:0006974;response to DNA damage stimulus;3.56584015254006e-07!GO:0019829;cation-transporting ATPase activity;3.5940550892955e-07!GO:0031968;organelle outer membrane;3.63374770476845e-07!GO:0003924;GTPase activity;3.69474006173209e-07!GO:0032559;adenyl ribonucleotide binding;3.74765202412464e-07!GO:0006163;purine nucleotide metabolic process;4.78636835897371e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.90601022740806e-07!GO:0019867;outer membrane;5.38964473788269e-07!GO:0006916;anti-apoptosis;6.42889555027919e-07!GO:0005524;ATP binding;6.8466964941299e-07!GO:0009892;negative regulation of metabolic process;7.11418476946506e-07!GO:0048475;coated membrane;7.17415359331015e-07!GO:0030117;membrane coat;7.17415359331015e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.36662303203371e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.36662303203371e-07!GO:0009259;ribonucleotide metabolic process;7.39963885622972e-07!GO:0045786;negative regulation of progression through cell cycle;7.40218881866442e-07!GO:0009150;purine ribonucleotide metabolic process;8.85315157897255e-07!GO:0016887;ATPase activity;9.78392713023804e-07!GO:0009719;response to endogenous stimulus;1.0029543969855e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.01548858969886e-06!GO:0032787;monocarboxylic acid metabolic process;1.28796597870403e-06!GO:0009141;nucleoside triphosphate metabolic process;1.31914966582442e-06!GO:0005793;ER-Golgi intermediate compartment;1.34894361677318e-06!GO:0031324;negative regulation of cellular metabolic process;1.3942101877944e-06!GO:0019222;regulation of metabolic process;1.82379660582181e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.96104349024338e-06!GO:0051170;nuclear import;2.01240530384519e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.01240530384519e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.01240530384519e-06!GO:0006606;protein import into nucleus;2.04235841962918e-06!GO:0043566;structure-specific DNA binding;2.16293819371578e-06!GO:0044453;nuclear membrane part;2.17840757358081e-06!GO:0046034;ATP metabolic process;2.27187247736047e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.68526931925963e-06!GO:0005773;vacuole;2.70139062192424e-06!GO:0005525;GTP binding;2.75317573097681e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.87662810996125e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.87662810996125e-06!GO:0006164;purine nucleotide biosynthetic process;2.87953179992946e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.26010423860944e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.28019283020039e-06!GO:0065007;biological regulation;3.38404913246397e-06!GO:0009108;coenzyme biosynthetic process;3.50384067851336e-06!GO:0007005;mitochondrion organization and biogenesis;3.50744183751563e-06!GO:0008654;phospholipid biosynthetic process;3.52419075694064e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.10245000262678e-06!GO:0048037;cofactor binding;4.19616060948915e-06!GO:0042623;ATPase activity, coupled;4.67669779004115e-06!GO:0006118;electron transport;5.01017711664092e-06!GO:0006754;ATP biosynthetic process;5.13488182455434e-06!GO:0006753;nucleoside phosphate metabolic process;5.13488182455434e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.35703830504432e-06!GO:0016310;phosphorylation;5.74461699055915e-06!GO:0016044;membrane organization and biogenesis;6.55890011507529e-06!GO:0003714;transcription corepressor activity;6.74780593225174e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.0894843674339e-06!GO:0009260;ribonucleotide biosynthetic process;7.1319490521197e-06!GO:0050657;nucleic acid transport;7.46004686040633e-06!GO:0051236;establishment of RNA localization;7.46004686040633e-06!GO:0050658;RNA transport;7.46004686040633e-06!GO:0008361;regulation of cell size;8.01720210782283e-06!GO:0000074;regulation of progression through cell cycle;8.36925256127979e-06!GO:0007049;cell cycle;8.65947157346558e-06!GO:0032446;protein modification by small protein conjugation;8.94825823057976e-06!GO:0051726;regulation of cell cycle;9.08454342817714e-06!GO:0006403;RNA localization;9.89218672524414e-06!GO:0045259;proton-transporting ATP synthase complex;1.00068426413013e-05!GO:0000323;lytic vacuole;1.04466087081393e-05!GO:0005764;lysosome;1.04466087081393e-05!GO:0030120;vesicle coat;1.24763628596235e-05!GO:0030662;coated vesicle membrane;1.24763628596235e-05!GO:0044262;cellular carbohydrate metabolic process;1.33959003226926e-05!GO:0016049;cell growth;1.40614060023333e-05!GO:0051789;response to protein stimulus;1.40663317487664e-05!GO:0006986;response to unfolded protein;1.40663317487664e-05!GO:0016567;protein ubiquitination;1.43159535682785e-05!GO:0005798;Golgi-associated vesicle;1.52886653142486e-05!GO:0005769;early endosome;1.55224266692088e-05!GO:0007243;protein kinase cascade;1.66248169487513e-05!GO:0005643;nuclear pore;1.67050310450532e-05!GO:0019899;enzyme binding;1.72357343121854e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.75649548992416e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.04048031514272e-05!GO:0031988;membrane-bound vesicle;2.16652531444472e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.18866712517835e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.41331840634696e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.41331840634696e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.41331840634696e-05!GO:0000151;ubiquitin ligase complex;2.41997519706514e-05!GO:0051287;NAD binding;2.48247083623006e-05!GO:0065002;intracellular protein transport across a membrane;2.50472859847271e-05!GO:0032561;guanyl ribonucleotide binding;2.580679386761e-05!GO:0019001;guanyl nucleotide binding;2.580679386761e-05!GO:0006281;DNA repair;2.74739366308028e-05!GO:0031252;leading edge;2.81252975558118e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.40996775356192e-05!GO:0003713;transcription coactivator activity;3.53961868635621e-05!GO:0005777;peroxisome;3.65273926775394e-05!GO:0042579;microbody;3.65273926775394e-05!GO:0016568;chromatin modification;3.66869278261249e-05!GO:0044255;cellular lipid metabolic process;3.68903465564781e-05!GO:0042254;ribosome biogenesis and assembly;3.79639969682139e-05!GO:0043038;amino acid activation;3.81888867613541e-05!GO:0006418;tRNA aminoacylation for protein translation;3.81888867613541e-05!GO:0043039;tRNA aminoacylation;3.81888867613541e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.12356722691532e-05!GO:0006613;cotranslational protein targeting to membrane;4.31234793826652e-05!GO:0016481;negative regulation of transcription;4.4804530860856e-05!GO:0000245;spliceosome assembly;5.68839661476961e-05!GO:0006950;response to stress;5.76888278006275e-05!GO:0031982;vesicle;6.21342769217562e-05!GO:0008026;ATP-dependent helicase activity;6.67845932726398e-05!GO:0004386;helicase activity;6.96572045755632e-05!GO:0016197;endosome transport;6.9990148054189e-05!GO:0008092;cytoskeletal protein binding;7.56148946359919e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.85417573264045e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;8.17080792645651e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.26805496863145e-05!GO:0003697;single-stranded DNA binding;8.54275562725223e-05!GO:0046930;pore complex;8.9079310915291e-05!GO:0005667;transcription factor complex;9.14479758145058e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;9.25048634798669e-05!GO:0030029;actin filament-based process;9.35040258963988e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.35533831745624e-05!GO:0051028;mRNA transport;0.00010275855812602!GO:0031410;cytoplasmic vesicle;0.000105139866511815!GO:0009117;nucleotide metabolic process;0.000106440488469728!GO:0005839;proteasome core complex (sensu Eukaryota);0.000107168223659954!GO:0003690;double-stranded DNA binding;0.000114693655583608!GO:0006752;group transfer coenzyme metabolic process;0.000115226301499645!GO:0006629;lipid metabolic process;0.000123027129152011!GO:0044431;Golgi apparatus part;0.000136780303318248!GO:0048522;positive regulation of cellular process;0.000151788073133273!GO:0046983;protein dimerization activity;0.000151788073133273!GO:0006635;fatty acid beta-oxidation;0.00016102035347125!GO:0006631;fatty acid metabolic process;0.000172986525512026!GO:0030133;transport vesicle;0.000181091013501598!GO:0016563;transcription activator activity;0.000202504505194512!GO:0006323;DNA packaging;0.00020767659753344!GO:0008610;lipid biosynthetic process;0.000214133770296108!GO:0051427;hormone receptor binding;0.000226933670973937!GO:0030867;rough endoplasmic reticulum membrane;0.000256838241182059!GO:0030532;small nuclear ribonucleoprotein complex;0.00027680771627599!GO:0006979;response to oxidative stress;0.000282931295141211!GO:0003724;RNA helicase activity;0.00028361633114012!GO:0007264;small GTPase mediated signal transduction;0.000298397761672671!GO:0016787;hydrolase activity;0.000302418512773358!GO:0000314;organellar small ribosomal subunit;0.000303136160358497!GO:0005763;mitochondrial small ribosomal subunit;0.000303136160358497!GO:0044438;microbody part;0.000318779778999456!GO:0044439;peroxisomal part;0.000318779778999456!GO:0006399;tRNA metabolic process;0.000341211976444257!GO:0043021;ribonucleoprotein binding;0.000382474021709543!GO:0001558;regulation of cell growth;0.000385323831365088!GO:0005048;signal sequence binding;0.000416453563746959!GO:0004298;threonine endopeptidase activity;0.000420319561834967!GO:0035257;nuclear hormone receptor binding;0.000424848997301442!GO:0031902;late endosome membrane;0.000445500709273048!GO:0006402;mRNA catabolic process;0.000457549363260515!GO:0007050;cell cycle arrest;0.000492898635667474!GO:0051540;metal cluster binding;0.000583790073728126!GO:0051536;iron-sulfur cluster binding;0.000583790073728126!GO:0048471;perinuclear region of cytoplasm;0.000588354599915259!GO:0031903;microbody membrane;0.000613245712639842!GO:0005778;peroxisomal membrane;0.000613245712639842!GO:0051087;chaperone binding;0.000629271253406089!GO:0005791;rough endoplasmic reticulum;0.0006375317219268!GO:0031323;regulation of cellular metabolic process;0.000644491641946696!GO:0045892;negative regulation of transcription, DNA-dependent;0.00065239948719765!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000668177306024449!GO:0005762;mitochondrial large ribosomal subunit;0.000673142776990937!GO:0000315;organellar large ribosomal subunit;0.000673142776990937!GO:0005788;endoplasmic reticulum lumen;0.00069639569625605!GO:0006897;endocytosis;0.000701418524091103!GO:0010324;membrane invagination;0.000701418524091103!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000724903297029131!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000724903297029131!GO:0015002;heme-copper terminal oxidase activity;0.000724903297029131!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000724903297029131!GO:0004129;cytochrome-c oxidase activity;0.000724903297029131!GO:0042802;identical protein binding;0.000774004258229695!GO:0016859;cis-trans isomerase activity;0.000803286522501177!GO:0005905;coated pit;0.000804977163373736!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000819843435537795!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000823424102696632!GO:0006612;protein targeting to membrane;0.000900436406194276!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000910346380069882!GO:0003729;mRNA binding;0.000983031876453286!GO:0030518;steroid hormone receptor signaling pathway;0.000985995127683069!GO:0006350;transcription;0.000998780947426244!GO:0046474;glycerophospholipid biosynthetic process;0.00103794859663088!GO:0006006;glucose metabolic process;0.00108211272865047!GO:0016740;transferase activity;0.0011522914282136!GO:0051539;4 iron, 4 sulfur cluster binding;0.00119764840947195!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00136592676461468!GO:0031072;heat shock protein binding;0.00137883317031906!GO:0022402;cell cycle process;0.00137998022384272!GO:0008286;insulin receptor signaling pathway;0.00145314895438351!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00145314895438351!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00145314895438351!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00145314895438351!GO:0006364;rRNA processing;0.0015429799942599!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00160358143348282!GO:0005813;centrosome;0.00161035548088847!GO:0051920;peroxiredoxin activity;0.00163835012547757!GO:0043623;cellular protein complex assembly;0.00166260615173374!GO:0016779;nucleotidyltransferase activity;0.0016952635042624!GO:0051276;chromosome organization and biogenesis;0.00180333245395905!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00184293425365444!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00190659599971054!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00194589157716828!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00214425850577237!GO:0022890;inorganic cation transmembrane transporter activity;0.00217259369635758!GO:0007265;Ras protein signal transduction;0.00225930110713106!GO:0019395;fatty acid oxidation;0.00242205661289977!GO:0016885;ligase activity, forming carbon-carbon bonds;0.00245777850431755!GO:0046467;membrane lipid biosynthetic process;0.00245777850431755!GO:0016072;rRNA metabolic process;0.00267983744482695!GO:0031901;early endosome membrane;0.00286221710928976!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00296662210674538!GO:0040008;regulation of growth;0.00314946155559088!GO:0019318;hexose metabolic process;0.00315113877050671!GO:0031406;carboxylic acid binding;0.00315190904311654!GO:0000139;Golgi membrane;0.00316443822369844!GO:0043681;protein import into mitochondrion;0.00321186634381149!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00322274611139741!GO:0051128;regulation of cellular component organization and biogenesis;0.00332466623668543!GO:0051168;nuclear export;0.00334825104648718!GO:0065009;regulation of a molecular function;0.00334825104648718!GO:0006260;DNA replication;0.00350794905817866!GO:0043284;biopolymer biosynthetic process;0.00357127184960509!GO:0017091;AU-rich element binding;0.00358688633865356!GO:0050779;RNA destabilization;0.00358688633865356!GO:0000289;poly(A) tail shortening;0.00358688633865356!GO:0046489;phosphoinositide biosynthetic process;0.00359382544138803!GO:0008234;cysteine-type peptidase activity;0.00368746760348757!GO:0030118;clathrin coat;0.00374822963463373!GO:0006066;alcohol metabolic process;0.00377642338554419!GO:0048468;cell development;0.00378339587609261!GO:0000096;sulfur amino acid metabolic process;0.00378694518126729!GO:0019783;small conjugating protein-specific protease activity;0.00383868231491949!GO:0015631;tubulin binding;0.00385263444264408!GO:0030522;intracellular receptor-mediated signaling pathway;0.00402346030993886!GO:0006839;mitochondrial transport;0.0040522503607175!GO:0010468;regulation of gene expression;0.004088226193987!GO:0007010;cytoskeleton organization and biogenesis;0.00411398541931514!GO:0045454;cell redox homeostasis;0.00418879175032641!GO:0008186;RNA-dependent ATPase activity;0.00423167684778056!GO:0048518;positive regulation of biological process;0.00438074910052651!GO:0003711;transcription elongation regulator activity;0.00441706132811504!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00446323675184966!GO:0015399;primary active transmembrane transporter activity;0.00446323675184966!GO:0005815;microtubule organizing center;0.0045000683366254!GO:0051098;regulation of binding;0.00454104979409936!GO:0005996;monosaccharide metabolic process;0.00454104979409936!GO:0007034;vacuolar transport;0.00462520691669182!GO:0003746;translation elongation factor activity;0.0047387698116852!GO:0016126;sterol biosynthetic process;0.00492210315976367!GO:0009165;nucleotide biosynthetic process;0.00492454469728554!GO:0030145;manganese ion binding;0.00521536234609744!GO:0001726;ruffle;0.00521536234609744!GO:0019843;rRNA binding;0.00521735596973735!GO:0030663;COPI coated vesicle membrane;0.00524970939891948!GO:0030126;COPI vesicle coat;0.00524970939891948!GO:0004843;ubiquitin-specific protease activity;0.00528886935231339!GO:0030132;clathrin coat of coated pit;0.00576001899393088!GO:0048500;signal recognition particle;0.00619634117700568!GO:0016853;isomerase activity;0.00619814386237057!GO:0043488;regulation of mRNA stability;0.00629273198335809!GO:0043487;regulation of RNA stability;0.00629273198335809!GO:0045893;positive regulation of transcription, DNA-dependent;0.00636593139400289!GO:0004860;protein kinase inhibitor activity;0.00674564409860234!GO:0009081;branched chain family amino acid metabolic process;0.00686645539292243!GO:0009889;regulation of biosynthetic process;0.00686645539292243!GO:0030027;lamellipodium;0.00701596644068577!GO:0004300;enoyl-CoA hydratase activity;0.00706452332720651!GO:0006891;intra-Golgi vesicle-mediated transport;0.00729446420648799!GO:0008287;protein serine/threonine phosphatase complex;0.00740443407440037!GO:0016421;CoA carboxylase activity;0.00740443407440037!GO:0008154;actin polymerization and/or depolymerization;0.00747907136581654!GO:0003995;acyl-CoA dehydrogenase activity;0.00748092265154459!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00803414361199179!GO:0045941;positive regulation of transcription;0.00820040074589545!GO:0004221;ubiquitin thiolesterase activity;0.00820827260600683!GO:0007006;mitochondrial membrane organization and biogenesis;0.00828391691492933!GO:0009967;positive regulation of signal transduction;0.00838673066847703!GO:0006417;regulation of translation;0.00861824579655819!GO:0048487;beta-tubulin binding;0.00868002255246191!GO:0009966;regulation of signal transduction;0.00880777431384727!GO:0006607;NLS-bearing substrate import into nucleus;0.00894827606443739!GO:0007242;intracellular signaling cascade;0.00905733283893122!GO:0048154;S100 beta binding;0.00906767837516493!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00906767837516493!GO:0015630;microtubule cytoskeleton;0.00939880644803777!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00941312409403093!GO:0050811;GABA receptor binding;0.00954250639488285!GO:0032774;RNA biosynthetic process;0.00964271574282011!GO:0006401;RNA catabolic process;0.00965032601499855!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00978979236700044!GO:0006414;translational elongation;0.00978979236700044!GO:0065004;protein-DNA complex assembly;0.00995182377259155!GO:0016790;thiolester hydrolase activity;0.0100117770512571!GO:0046483;heterocycle metabolic process;0.0100117770512571!GO:0046870;cadmium ion binding;0.0100473592418864!GO:0030137;COPI-coated vesicle;0.0101194127145081!GO:0006351;transcription, DNA-dependent;0.0101194127145081!GO:0004004;ATP-dependent RNA helicase activity;0.0101411221950335!GO:0033673;negative regulation of kinase activity;0.0102029947988487!GO:0006469;negative regulation of protein kinase activity;0.0102029947988487!GO:0016408;C-acyltransferase activity;0.0102310317351856!GO:0006352;transcription initiation;0.0102982497296367!GO:0005774;vacuolar membrane;0.0104030942551434!GO:0016363;nuclear matrix;0.010681309215158!GO:0051101;regulation of DNA binding;0.010836382155167!GO:0030503;regulation of cell redox homeostasis;0.010931401111427!GO:0004722;protein serine/threonine phosphatase activity;0.010931401111427!GO:0006695;cholesterol biosynthetic process;0.0112317649648227!GO:0008139;nuclear localization sequence binding;0.0113333475195824!GO:0032507;maintenance of cellular protein localization;0.0115611701445168!GO:0005885;Arp2/3 protein complex;0.0119283083195864!GO:0035258;steroid hormone receptor binding;0.0121058158906489!GO:0003702;RNA polymerase II transcription factor activity;0.012142055089157!GO:0006749;glutathione metabolic process;0.012142055089157!GO:0006650;glycerophospholipid metabolic process;0.0122610010770722!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0123137996873718!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0123137996873718!GO:0046914;transition metal ion binding;0.012667926202492!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0127283281907282!GO:0009374;biotin binding;0.0127855919964067!GO:0005869;dynactin complex;0.0130648243387873!GO:0008250;oligosaccharyl transferase complex;0.0132323791527404!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0137371549132257!GO:0045047;protein targeting to ER;0.0137371549132257!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0141173279547253!GO:0031326;regulation of cellular biosynthetic process;0.0143856359306174!GO:0007041;lysosomal transport;0.0144802052453251!GO:0004576;oligosaccharyl transferase activity;0.0145067976815548!GO:0006778;porphyrin metabolic process;0.0148270326291803!GO:0033013;tetrapyrrole metabolic process;0.0148270326291803!GO:0030521;androgen receptor signaling pathway;0.0153142552670122!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.015326759152275!GO:0005975;carbohydrate metabolic process;0.0156883235215265!GO:0030384;phosphoinositide metabolic process;0.0157051292191526!GO:0016251;general RNA polymerase II transcription factor activity;0.0157051292191526!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0159902189379246!GO:0009083;branched chain family amino acid catabolic process;0.0162709343506972!GO:0043492;ATPase activity, coupled to movement of substances;0.0164374996173391!GO:0003899;DNA-directed RNA polymerase activity;0.0164493671419889!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0168430774821759!GO:0007030;Golgi organization and biogenesis;0.017925359430964!GO:0015992;proton transport;0.018193941873991!GO:0051252;regulation of RNA metabolic process;0.0182055918392995!GO:0008312;7S RNA binding;0.0184131589973201!GO:0005765;lysosomal membrane;0.0184346772478515!GO:0004680;casein kinase activity;0.0186012215527974!GO:0006383;transcription from RNA polymerase III promoter;0.0186018157345839!GO:0030140;trans-Golgi network transport vesicle;0.0189922907749399!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0192067177110219!GO:0006818;hydrogen transport;0.0192340724566064!GO:0030119;AP-type membrane coat adaptor complex;0.0193666953477047!GO:0019210;kinase inhibitor activity;0.0196990493576655!GO:0045947;negative regulation of translational initiation;0.0202409722144079!GO:0005159;insulin-like growth factor receptor binding;0.0202462617929838!GO:0033116;ER-Golgi intermediate compartment membrane;0.0203308315079469!GO:0004674;protein serine/threonine kinase activity;0.0203308315079469!GO:0022415;viral reproductive process;0.0204139470947845!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0211109710748048!GO:0045185;maintenance of protein localization;0.0212188118767729!GO:0016125;sterol metabolic process;0.0212188118767729!GO:0033559;unsaturated fatty acid metabolic process;0.0212967458632994!GO:0006636;unsaturated fatty acid biosynthetic process;0.0212967458632994!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0213851617512037!GO:0016791;phosphoric monoester hydrolase activity;0.0214898871260225!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0221934422146525!GO:0006626;protein targeting to mitochondrion;0.0225156660228515!GO:0043204;perikaryon;0.0229266266124222!GO:0003817;complement factor D activity;0.0236572857550466!GO:0030176;integral to endoplasmic reticulum membrane;0.0237654844934933!GO:0030041;actin filament polymerization;0.0237971885519727!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0241766502192791!GO:0035035;histone acetyltransferase binding;0.0241855000253978!GO:0044437;vacuolar part;0.0245035132958562!GO:0051651;maintenance of cellular localization;0.0246775380753084!GO:0051348;negative regulation of transferase activity;0.0252127293700842!GO:0043065;positive regulation of apoptosis;0.0261930817336893!GO:0050660;FAD binding;0.0261961314356281!GO:0008064;regulation of actin polymerization and/or depolymerization;0.026580208365341!GO:0006354;RNA elongation;0.026580208365341!GO:0030131;clathrin adaptor complex;0.0267159917367782!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0270293914948046!GO:0005083;small GTPase regulator activity;0.0273241340950361!GO:0006892;post-Golgi vesicle-mediated transport;0.0287188570305346!GO:0004448;isocitrate dehydrogenase activity;0.0287188570305346!GO:0006376;mRNA splice site selection;0.0287188570305346!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0287188570305346!GO:0004313;[acyl-carrier-protein] S-acetyltransferase activity;0.0287188570305346!GO:0019171;3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;0.0287188570305346!GO:0042587;glycogen granule;0.0287188570305346!GO:0004319;enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity;0.0287188570305346!GO:0016631;enoyl-[acyl-carrier-protein] reductase activity;0.0287188570305346!GO:0004317;3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity;0.0287188570305346!GO:0004316;3-oxoacyl-[acyl-carrier-protein] reductase activity;0.0287188570305346!GO:0005100;Rho GTPase activator activity;0.0292647524734274!GO:0003779;actin binding;0.0296097949802478!GO:0032984;macromolecular complex disassembly;0.0297050867639658!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0302617938404226!GO:0000209;protein polyubiquitination;0.0303566491168657!GO:0045637;regulation of myeloid cell differentiation;0.0304779104305372!GO:0031625;ubiquitin protein ligase binding;0.0304923205146172!GO:0043068;positive regulation of programmed cell death;0.030622808741786!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0306826273774447!GO:0004784;superoxide dismutase activity;0.0306826273774447!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0312815625936767!GO:0006338;chromatin remodeling;0.0313164100027864!GO:0030134;ER to Golgi transport vesicle;0.0313164100027864!GO:0030658;transport vesicle membrane;0.0314330896951237!GO:0006007;glucose catabolic process;0.0315978795760367!GO:0006611;protein export from nucleus;0.0315978795760367!GO:0006497;protein amino acid lipidation;0.0319909624423035!GO:0042158;lipoprotein biosynthetic process;0.0321374737169129!GO:0045792;negative regulation of cell size;0.0324744399783486!GO:0006740;NADPH regeneration;0.0324744399783486!GO:0006098;pentose-phosphate shunt;0.0324744399783486!GO:0001725;stress fiber;0.0324744399783486!GO:0032432;actin filament bundle;0.0324744399783486!GO:0043022;ribosome binding;0.0340942071952048!GO:0050790;regulation of catalytic activity;0.0342012765990363!GO:0008180;signalosome;0.0344109904227709!GO:0012506;vesicle membrane;0.0346134514780201!GO:0004177;aminopeptidase activity;0.0354306399015971!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0355352299701331!GO:0006984;ER-nuclear signaling pathway;0.0358630351999167!GO:0006644;phospholipid metabolic process;0.0362686622636793!GO:0016615;malate dehydrogenase activity;0.0365472302446159!GO:0030659;cytoplasmic vesicle membrane;0.0365472302446159!GO:0008383;manganese superoxide dismutase activity;0.0365472302446159!GO:0001315;age-dependent response to reactive oxygen species;0.0365472302446159!GO:0006767;water-soluble vitamin metabolic process;0.0365957547766131!GO:0045449;regulation of transcription;0.0366308320220352!GO:0042168;heme metabolic process;0.0368116742466736!GO:0005977;glycogen metabolic process;0.037085623338899!GO:0006333;chromatin assembly or disassembly;0.0371009316647276!GO:0030308;negative regulation of cell growth;0.0378752048174313!GO:0030235;nitric-oxide synthase regulator activity;0.0391714044146467!GO:0022411;cellular component disassembly;0.0392529097814387!GO:0050749;apolipoprotein E receptor binding;0.0392529097814387!GO:0030880;RNA polymerase complex;0.0392760226567854!GO:0008203;cholesterol metabolic process;0.0393768016724191!GO:0006506;GPI anchor biosynthetic process;0.0401606163606321!GO:0008629;induction of apoptosis by intracellular signals;0.0412640251682943!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0416587476353458!GO:0008047;enzyme activator activity;0.0417586921654071!GO:0000303;response to superoxide;0.042336931343021!GO:0030139;endocytic vesicle;0.0426561162148946!GO:0047485;protein N-terminus binding;0.0427200191196201!GO:0006779;porphyrin biosynthetic process;0.0427534548306068!GO:0033014;tetrapyrrole biosynthetic process;0.0427534548306068!GO:0045045;secretory pathway;0.0428787109583454!GO:0017166;vinculin binding;0.0438834447127046!GO:0000059;protein import into nucleus, docking;0.0438834447127046!GO:0051329;interphase of mitotic cell cycle;0.0454494288018312!GO:0005099;Ras GTPase activator activity;0.0456428559792877!GO:0030508;thiol-disulfide exchange intermediate activity;0.0459813306169788!GO:0004721;phosphoprotein phosphatase activity;0.0460159365335352!GO:0030911;TPR domain binding;0.0463184106968536!GO:0005669;transcription factor TFIID complex;0.0463184106968536!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0473190153777228!GO:0033043;regulation of organelle organization and biogenesis;0.0473190153777228!GO:0045926;negative regulation of growth;0.0480093517650967!GO:0006505;GPI anchor metabolic process;0.0480717530700758!GO:0016788;hydrolase activity, acting on ester bonds;0.0481682380448477!GO:0016311;dephosphorylation;0.0488442482630788!GO:0030660;Golgi-associated vesicle membrane;0.0490719868184057!GO:0031529;ruffle organization and biogenesis;0.0496910313456845!GO:0008017;microtubule binding;0.0497621057809991 | |||
|sample_id=12234 | |sample_id=12234 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=adipose tissue | |sample_tissue=adipose tissue | ||
|top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:3.1691786956;STAT2,4,6:3.0890586847;AR:2.59974175261;FOXO1,3,4:2.59089270292;RORA:2.48551891734;HBP1_HMGB_SSRP1_UBTF:2.45304893483;PDX1:2.3738891648;ESRRA:2.34716771604;NFIL3:2.263220011;FOX{D1,D2}:2.18171064659;XBP1:2.06488513424;NFATC1..3:1.92986219568;TGIF1:1.70497683659;IKZF1:1.704841217;ATF6:1.65053348793;STAT1,3:1.64974825853;GCM1,2:1.54801658237;SPZ1:1.47541516713;DBP:1.43974165512;TFCP2:1.42753332185;EP300:1.39099334792;HNF4A_NR2F1,2:1.34509793263;MTF1:1.31473178263;SOX5:1.29907560771;ATF2:1.28056192402;ARID5B:1.27475869871;HMX1:1.20479355627;MAZ:1.18584060258;NFIX:1.17898093246;FOXA2:1.17495499929;ZNF238:1.14605554252;TLX1..3_NFIC{dimer}:1.10403893829;bHLH_family:1.080576698;MEF2{A,B,C,D}:1.08040383379;SRF:1.04194031453;NR3C1:1.03903879466;FOXL1:1.034938839;MYBL2:1.03326629;PAX6:1.01575681999;HSF1,2:1.01212977872;SP1:0.99377725063;NFE2L1:0.959660443818;TBP:0.946323274119;MED-1{core}:0.942524500581;NR1H4:0.93348840259;PRRX1,2:0.933065525063;RXR{A,B,G}:0.924071460513;FOXN1:0.913112000058;TFAP2{A,C}:0.898419976095;CEBPA,B_DDIT3:0.856761384807;JUN:0.813794105345;HLF:0.796071745444;EBF1:0.785686438699;EN1,2:0.782940777959;TEAD1:0.744860819876;NANOG{mouse}:0.735413248182;TFAP2B:0.726113390187;FOXD3:0.719520913855;ATF4:0.719376759839;NHLH1,2:0.718292436032;NR6A1:0.707181292307;EGR1..3:0.705984888881;NFE2:0.699942826691;NANOG:0.696203633431;GFI1B:0.694946449616;RFX2..5_RFXANK_RFXAP:0.690189427185;CDC5L:0.677406467578;FOXP3:0.662786763078;HOXA9_MEIS1:0.658207503257;HOX{A5,B5}:0.644285318224;MAFB:0.63898092305;PATZ1:0.630977863519;NKX3-2:0.627395550972;GZF1:0.626192950877;MTE{core}:0.622219643795;HOX{A4,D4}:0.606185690683;HIC1:0.555901007538;TEF:0.526090614187;ATF5_CREB3:0.492079092698;IKZF2:0.48325923608;GTF2I:0.469784475586;NFKB1_REL_RELA:0.460780743289;STAT5{A,B}:0.401248746669;LHX3,4:0.401058776317;BREu{core}:0.399775621633;FOXQ1:0.390584681495;MYFfamily:0.387400499916;NKX2-1,4:0.360596082416;TLX2:0.359678338234;FOS_FOS{B,L1}_JUN{B,D}:0.354500470636;GTF2A1,2:0.30403207925;SREBF1,2:0.289776016717;MZF1:0.285034544658;CREB1:0.266246663322;BPTF:0.265591456933;FOX{I1,J2}:0.257370399399;ADNP_IRX_SIX_ZHX:0.247362625386;FOSL2:0.214367520481;NKX2-2,8:0.212685666329;ZNF384:0.191340925081;HNF1A:0.170150669399;FOX{F1,F2,J1}:0.133254432916;IRF7:0.125101208586;BACH2:0.114563262051;PAX2:0.0931505886942;TBX4,5:0.0917319678305;ZNF423:0.0735577707864;POU6F1:0.0601975356948;RFX1:0.0348538471706;SOX17:0.0244851503787;TFAP4:0.00580080520028;NR5A1,2:0.00030034290855;PAX5:-0.00019307199413;FOXP1:-0.0158513556795;DMAP1_NCOR{1,2}_SMARC:-0.0408043694614;ZFP161:-0.0587450262821;NKX6-1,2:-0.0730793006568;ZIC1..3:-0.0949620352568;NFY{A,B,C}:-0.101024672153;RBPJ:-0.115163974935;GATA6:-0.130765554847;NKX2-3_NKX2-5:-0.139367484017;ETS1,2:-0.141610633721;PAX8:-0.142257520189;PBX1:-0.160768824625;HIF1A:-0.165665263977;IRF1,2:-0.17911136735;ZNF148:-0.196655217017;GATA4:-0.210744553876;HAND1,2:-0.218653475585;SMAD1..7,9:-0.224277773117;ELF1,2,4:-0.238458785866;TP53:-0.252270820578;AHR_ARNT_ARNT2:-0.27361563547;REST:-0.286837701964;NRF1:-0.329647995229;ZNF143:-0.34462288702;SPIB:-0.350859023498;SOX2:-0.363761487984;YY1:-0.369716838841;CUX2:-0.384562977231;SPI1:-0.410195694141;ZBTB6:-0.420765381617;NFE2L2:-0.420882019291;VSX1,2:-0.422175467662;TAL1_TCF{3,4,12}:-0.449736696817;GFI1:-0.472145568566;RXRA_VDR{dimer}:-0.477819033322;RUNX1..3:-0.487570797919;GLI1..3:-0.501794785846;HES1:-0.509314443954;KLF4:-0.52783224253;PRDM1:-0.534092484794;CRX:-0.558783224413;PPARG:-0.572414294161;XCPE1{core}:-0.598651892836;PAX1,9:-0.605528052065;LEF1_TCF7_TCF7L1,2:-0.606335028517;RREB1:-0.622016225378;ESR1:-0.656714801705;OCT4_SOX2{dimer}:-0.658820185265;PAX3,7:-0.682420685948;MYB:-0.690672664544;E2F1..5:-0.733822048939;ALX1:-0.751965984414;SOX{8,9,10}:-0.773258360219;T:-0.796965602045;PAX4:-0.798460278965;ELK1,4_GABP{A,B1}:-0.834451550028;HOX{A6,A7,B6,B7}:-0.834586309032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.83465679316;HMGA1,2:-0.878479228906;PITX1..3:-0.881914520228;UFEwm:-0.898342551095;POU2F1..3:-0.975808394403;ZEB1:-0.985863012495;LMO2:-1.00927937345;SNAI1..3:-1.01672455345;ALX4:-1.02037137421;EVI1:-1.06882500962;TFDP1:-1.07349378897;ZBTB16:-1.07811065624;POU5F1:-1.32683186265;POU1F1:-1.35391596606;FOXM1:-1.36381973182;CDX1,2,4:-1.37271965638;POU3F1..4:-1.50190380335;ONECUT1,2:-1.64042249134;AIRE:-1.67069182697;NKX3-1:-1.7137140742;TOPORS:-1.86117208994;MYOD1:-1.97677633283 | |top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:3.1691786956;STAT2,4,6:3.0890586847;AR:2.59974175261;FOXO1,3,4:2.59089270292;RORA:2.48551891734;HBP1_HMGB_SSRP1_UBTF:2.45304893483;PDX1:2.3738891648;ESRRA:2.34716771604;NFIL3:2.263220011;FOX{D1,D2}:2.18171064659;XBP1:2.06488513424;NFATC1..3:1.92986219568;TGIF1:1.70497683659;IKZF1:1.704841217;ATF6:1.65053348793;STAT1,3:1.64974825853;GCM1,2:1.54801658237;SPZ1:1.47541516713;DBP:1.43974165512;TFCP2:1.42753332185;EP300:1.39099334792;HNF4A_NR2F1,2:1.34509793263;MTF1:1.31473178263;SOX5:1.29907560771;ATF2:1.28056192402;ARID5B:1.27475869871;HMX1:1.20479355627;MAZ:1.18584060258;NFIX:1.17898093246;FOXA2:1.17495499929;ZNF238:1.14605554252;TLX1..3_NFIC{dimer}:1.10403893829;bHLH_family:1.080576698;MEF2{A,B,C,D}:1.08040383379;SRF:1.04194031453;NR3C1:1.03903879466;FOXL1:1.034938839;MYBL2:1.03326629;PAX6:1.01575681999;HSF1,2:1.01212977872;SP1:0.99377725063;NFE2L1:0.959660443818;TBP:0.946323274119;MED-1{core}:0.942524500581;NR1H4:0.93348840259;PRRX1,2:0.933065525063;RXR{A,B,G}:0.924071460513;FOXN1:0.913112000058;TFAP2{A,C}:0.898419976095;CEBPA,B_DDIT3:0.856761384807;JUN:0.813794105345;HLF:0.796071745444;EBF1:0.785686438699;EN1,2:0.782940777959;TEAD1:0.744860819876;NANOG{mouse}:0.735413248182;TFAP2B:0.726113390187;FOXD3:0.719520913855;ATF4:0.719376759839;NHLH1,2:0.718292436032;NR6A1:0.707181292307;EGR1..3:0.705984888881;NFE2:0.699942826691;NANOG:0.696203633431;GFI1B:0.694946449616;RFX2..5_RFXANK_RFXAP:0.690189427185;CDC5L:0.677406467578;FOXP3:0.662786763078;HOXA9_MEIS1:0.658207503257;HOX{A5,B5}:0.644285318224;MAFB:0.63898092305;PATZ1:0.630977863519;NKX3-2:0.627395550972;GZF1:0.626192950877;MTE{core}:0.622219643795;HOX{A4,D4}:0.606185690683;HIC1:0.555901007538;TEF:0.526090614187;ATF5_CREB3:0.492079092698;IKZF2:0.48325923608;GTF2I:0.469784475586;NFKB1_REL_RELA:0.460780743289;STAT5{A,B}:0.401248746669;LHX3,4:0.401058776317;BREu{core}:0.399775621633;FOXQ1:0.390584681495;MYFfamily:0.387400499916;NKX2-1,4:0.360596082416;TLX2:0.359678338234;FOS_FOS{B,L1}_JUN{B,D}:0.354500470636;GTF2A1,2:0.30403207925;SREBF1,2:0.289776016717;MZF1:0.285034544658;CREB1:0.266246663322;BPTF:0.265591456933;FOX{I1,J2}:0.257370399399;ADNP_IRX_SIX_ZHX:0.247362625386;FOSL2:0.214367520481;NKX2-2,8:0.212685666329;ZNF384:0.191340925081;HNF1A:0.170150669399;FOX{F1,F2,J1}:0.133254432916;IRF7:0.125101208586;BACH2:0.114563262051;PAX2:0.0931505886942;TBX4,5:0.0917319678305;ZNF423:0.0735577707864;POU6F1:0.0601975356948;RFX1:0.0348538471706;SOX17:0.0244851503787;TFAP4:0.00580080520028;NR5A1,2:0.00030034290855;PAX5:-0.00019307199413;FOXP1:-0.0158513556795;DMAP1_NCOR{1,2}_SMARC:-0.0408043694614;ZFP161:-0.0587450262821;NKX6-1,2:-0.0730793006568;ZIC1..3:-0.0949620352568;NFY{A,B,C}:-0.101024672153;RBPJ:-0.115163974935;GATA6:-0.130765554847;NKX2-3_NKX2-5:-0.139367484017;ETS1,2:-0.141610633721;PAX8:-0.142257520189;PBX1:-0.160768824625;HIF1A:-0.165665263977;IRF1,2:-0.17911136735;ZNF148:-0.196655217017;GATA4:-0.210744553876;HAND1,2:-0.218653475585;SMAD1..7,9:-0.224277773117;ELF1,2,4:-0.238458785866;TP53:-0.252270820578;AHR_ARNT_ARNT2:-0.27361563547;REST:-0.286837701964;NRF1:-0.329647995229;ZNF143:-0.34462288702;SPIB:-0.350859023498;SOX2:-0.363761487984;YY1:-0.369716838841;CUX2:-0.384562977231;SPI1:-0.410195694141;ZBTB6:-0.420765381617;NFE2L2:-0.420882019291;VSX1,2:-0.422175467662;TAL1_TCF{3,4,12}:-0.449736696817;GFI1:-0.472145568566;RXRA_VDR{dimer}:-0.477819033322;RUNX1..3:-0.487570797919;GLI1..3:-0.501794785846;HES1:-0.509314443954;KLF4:-0.52783224253;PRDM1:-0.534092484794;CRX:-0.558783224413;PPARG:-0.572414294161;XCPE1{core}:-0.598651892836;PAX1,9:-0.605528052065;LEF1_TCF7_TCF7L1,2:-0.606335028517;RREB1:-0.622016225378;ESR1:-0.656714801705;OCT4_SOX2{dimer}:-0.658820185265;PAX3,7:-0.682420685948;MYB:-0.690672664544;E2F1..5:-0.733822048939;ALX1:-0.751965984414;SOX{8,9,10}:-0.773258360219;T:-0.796965602045;PAX4:-0.798460278965;ELK1,4_GABP{A,B1}:-0.834451550028;HOX{A6,A7,B6,B7}:-0.834586309032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.83465679316;HMGA1,2:-0.878479228906;PITX1..3:-0.881914520228;UFEwm:-0.898342551095;POU2F1..3:-0.975808394403;ZEB1:-0.985863012495;LMO2:-1.00927937345;SNAI1..3:-1.01672455345;ALX4:-1.02037137421;EVI1:-1.06882500962;TFDP1:-1.07349378897;ZBTB16:-1.07811065624;POU5F1:-1.32683186265;POU1F1:-1.35391596606;FOXM1:-1.36381973182;CDX1,2,4:-1.37271965638;POU3F1..4:-1.50190380335;ONECUT1,2:-1.64042249134;AIRE:-1.67069182697;NKX3-1:-1.7137140742;TOPORS:-1.86117208994;MYOD1:-1.97677633283 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12234-129G2;search_select_hide=table117:FF:12234-129G2 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | mature adipocyte, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12562 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12562
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12562
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.128 |
| 10 | 10 | 0.407 |
| 100 | 100 | 0.853 |
| 101 | 101 | 0.566 |
| 102 | 102 | 0.0875 |
| 103 | 103 | 0.395 |
| 104 | 104 | 0.997 |
| 105 | 105 | 0.83 |
| 106 | 106 | 0.926 |
| 107 | 107 | 0.711 |
| 108 | 108 | 0.452 |
| 109 | 109 | 0.093 |
| 11 | 11 | 0.0828 |
| 110 | 110 | 0.0707 |
| 111 | 111 | 0.0561 |
| 112 | 112 | 0.446 |
| 113 | 113 | 0.571 |
| 114 | 114 | 0.0247 |
| 115 | 115 | 0.595 |
| 116 | 116 | 0.0946 |
| 117 | 117 | 0.0162 |
| 118 | 118 | 0.328 |
| 119 | 119 | 0.639 |
| 12 | 12 | 0.378 |
| 120 | 120 | 0.0678 |
| 121 | 121 | 0.721 |
| 122 | 122 | 0.926 |
| 123 | 123 | 0.0183 |
| 124 | 124 | 0.463 |
| 125 | 125 | 0.11 |
| 126 | 126 | 0.978 |
| 127 | 127 | 0.129 |
| 128 | 128 | 0.798 |
| 129 | 129 | 0.748 |
| 13 | 13 | 0.928 |
| 130 | 130 | 0.308 |
| 131 | 131 | 0.29 |
| 132 | 132 | 0.566 |
| 133 | 133 | 0.431 |
| 134 | 134 | 0.602 |
| 135 | 135 | 0.757 |
| 136 | 136 | 0.354 |
| 137 | 137 | 0.769 |
| 138 | 138 | 0.0899 |
| 139 | 139 | 0.668 |
| 14 | 14 | 0.918 |
| 140 | 140 | 0.004 |
| 141 | 141 | 0.366 |
| 142 | 142 | 0.944 |
| 143 | 143 | 0.03 |
| 144 | 144 | 0.648 |
| 145 | 145 | 0.113 |
| 146 | 146 | 0.313 |
| 147 | 147 | 0.573 |
| 148 | 148 | 0.0837 |
| 149 | 149 | 0.518 |
| 15 | 15 | 0.326 |
| 150 | 150 | 0.726 |
| 151 | 151 | 0.319 |
| 152 | 152 | 0.858 |
| 153 | 153 | 0.0491 |
| 154 | 154 | 0.249 |
| 155 | 155 | 0.215 |
| 156 | 156 | 0.38 |
| 157 | 157 | 0.567 |
| 158 | 158 | 0.394 |
| 159 | 159 | 0.188 |
| 16 | 16 | 0.176 |
| 160 | 160 | 0.379 |
| 161 | 161 | 0.301 |
| 162 | 162 | 0.701 |
| 163 | 163 | 0.733 |
| 164 | 164 | 0.323 |
| 165 | 165 | 0.359 |
| 166 | 166 | 0.839 |
| 167 | 167 | 0.962 |
| 168 | 168 | 0.852 |
| 169 | 169 | 0.157 |
| 17 | 17 | 0.309 |
| 18 | 18 | 0.0802 |
| 19 | 19 | 0.994 |
| 2 | 2 | 0.666 |
| 20 | 20 | 0.891 |
| 21 | 21 | 0.326 |
| 22 | 22 | 0.681 |
| 23 | 23 | 0.508 |
| 24 | 24 | 0.858 |
| 25 | 25 | 0.96 |
| 26 | 26 | 0.0625 |
| 27 | 27 | 0.211 |
| 28 | 28 | 0.963 |
| 29 | 29 | 0.171 |
| 3 | 3 | 0.149 |
| 30 | 30 | 0.485 |
| 31 | 31 | 0.601 |
| 32 | 32 | 2.18799e-4 |
| 33 | 33 | 0.729 |
| 34 | 34 | 0.87 |
| 35 | 35 | 0.241 |
| 36 | 36 | 0.789 |
| 37 | 37 | 0.474 |
| 38 | 38 | 0.386 |
| 39 | 39 | 0.0884 |
| 4 | 4 | 0.139 |
| 40 | 40 | 0.35 |
| 41 | 41 | 0.928 |
| 42 | 42 | 0.474 |
| 43 | 43 | 0.416 |
| 44 | 44 | 0.00641 |
| 45 | 45 | 0.484 |
| 46 | 46 | 0.0463 |
| 47 | 47 | 0.0797 |
| 48 | 48 | 0.0595 |
| 49 | 49 | 0.101 |
| 5 | 5 | 0.158 |
| 50 | 50 | 0.796 |
| 51 | 51 | 0.568 |
| 52 | 52 | 0.285 |
| 53 | 53 | 0.796 |
| 54 | 54 | 0.796 |
| 55 | 55 | 0.0861 |
| 56 | 56 | 0.244 |
| 57 | 57 | 0.341 |
| 58 | 58 | 0.738 |
| 59 | 59 | 0.107 |
| 6 | 6 | 0.952 |
| 60 | 60 | 0.442 |
| 61 | 61 | 0.0895 |
| 62 | 62 | 0.587 |
| 63 | 63 | 0.56 |
| 64 | 64 | 0.0664 |
| 65 | 65 | 0.6 |
| 66 | 66 | 0.608 |
| 67 | 67 | 0.439 |
| 68 | 68 | 0.842 |
| 69 | 69 | 0.00288 |
| 7 | 7 | 0.337 |
| 70 | 70 | 0.0287 |
| 71 | 71 | 0.0453 |
| 72 | 72 | 0.76 |
| 73 | 73 | 0.347 |
| 74 | 74 | 0.787 |
| 75 | 75 | 0.12 |
| 76 | 76 | 0.337 |
| 77 | 77 | 0.254 |
| 78 | 78 | 0.853 |
| 79 | 79 | 0.0724 |
| 8 | 8 | 0.242 |
| 80 | 80 | 0.181 |
| 81 | 81 | 0.319 |
| 82 | 82 | 0.741 |
| 83 | 83 | 0.013 |
| 84 | 84 | 0.809 |
| 85 | 85 | 0.608 |
| 86 | 86 | 0.761 |
| 87 | 87 | 0.267 |
| 88 | 88 | 0.851 |
| 89 | 89 | 0.142 |
| 9 | 9 | 0.585 |
| 90 | 90 | 0.943 |
| 91 | 91 | 0.377 |
| 92 | 92 | 0.86 |
| 93 | 93 | 0.669 |
| 94 | 94 | 0.143 |
| 95 | 95 | 0.108 |
| 96 | 96 | 0.884 |
| 97 | 97 | 0.348 |
| 98 | 98 | 0.323 |
| 99 | 99 | 0.354 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12562
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000266 human mature adipocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000266 (human mature adipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
