FF:11891-125E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005506 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007786;DRR008658;DRZ000083;DRZ001468;DRZ011433;DRZ012818 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000638,FF:0100297,FF:0101120,FF:0011133 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000638,FF:0011133,FF:11891-125E1 | |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000638,FF:0011133,FF:11891-125E1 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep2.CNhs13496.11891-125E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep2.CNhs13496.11891-125E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep2.CNhs13496.11891-125E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep2.CNhs13496.11891-125E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep2.CNhs13496.11891-125E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11891-125E1 | |id=FF:11891-125E1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011133 | ||
|is_obsolete= | |||
|library_id=CNhs13496 | |||
|library_id_phase_based=2:CNhs13496 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11891 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11891 | |||
|name=Hep-2 cells treated with Streptococci strain 5448, biol_rep2 | |name=Hep-2 cells treated with Streptococci strain 5448, biol_rep2 | ||
|namespace= | |namespace= | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13496,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13496,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 54: | Line 75: | ||
|rna_rin=9.5 | |rna_rin=9.5 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.25E+03 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Hep-2 | |sample_cell_line=Hep-2 | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.23044648724209e-261!GO:0043226;organelle;2.97358021524866e-213!GO:0043231;intracellular membrane-bound organelle;4.17501525126316e-213!GO:0043227;membrane-bound organelle;4.4173483883382e-213!GO:0043229;intracellular organelle;9.78984750885582e-213!GO:0005737;cytoplasm;5.01097663356021e-204!GO:0044422;organelle part;3.50399890760531e-175!GO:0044446;intracellular organelle part;2.25794554643868e-173!GO:0044444;cytoplasmic part;5.20086522387202e-151!GO:0032991;macromolecular complex;1.89043095166008e-119!GO:0030529;ribonucleoprotein complex;9.99779515083042e-101!GO:0005739;mitochondrion;1.27848122603044e-96!GO:0044237;cellular metabolic process;2.40151736795575e-96!GO:0044238;primary metabolic process;8.86314961362342e-93!GO:0043233;organelle lumen;1.34733964474674e-88!GO:0031974;membrane-enclosed lumen;1.34733964474674e-88!GO:0044428;nuclear part;1.51440044311336e-88!GO:0003723;RNA binding;5.01805934015171e-83!GO:0005634;nucleus;1.23147601127416e-82!GO:0043170;macromolecule metabolic process;2.52160711971033e-78!GO:0005515;protein binding;1.99810982943963e-67!GO:0044429;mitochondrial part;1.32563893322656e-62!GO:0006396;RNA processing;1.87449481715541e-62!GO:0043234;protein complex;2.90278220395189e-60!GO:0005840;ribosome;2.90278220395189e-60!GO:0006412;translation;1.76830336695999e-58!GO:0031090;organelle membrane;1.76830336695999e-58!GO:0031967;organelle envelope;5.38128803332924e-55!GO:0031975;envelope;9.0453333209988e-55!GO:0003735;structural constituent of ribosome;3.88704676519686e-52!GO:0044249;cellular biosynthetic process;3.92923817210173e-52!GO:0031981;nuclear lumen;5.24895116439602e-52!GO:0009058;biosynthetic process;1.89693802487601e-51!GO:0016043;cellular component organization and biogenesis;4.65272943482165e-48!GO:0033279;ribosomal subunit;9.94513581291317e-46!GO:0019538;protein metabolic process;1.71581183653709e-44!GO:0006259;DNA metabolic process;2.26404948173355e-43!GO:0043228;non-membrane-bound organelle;3.51349768762891e-43!GO:0043232;intracellular non-membrane-bound organelle;3.51349768762891e-43!GO:0015031;protein transport;3.76551830727825e-43!GO:0033036;macromolecule localization;1.35102197572769e-42!GO:0016071;mRNA metabolic process;2.61289997549716e-42!GO:0005829;cytosol;2.76005966322934e-42!GO:0009059;macromolecule biosynthetic process;3.82911935307152e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38018823722628e-41!GO:0008380;RNA splicing;3.15351764382335e-40!GO:0005740;mitochondrial envelope;3.74372653010803e-40!GO:0043283;biopolymer metabolic process;7.43760470733903e-40!GO:0044260;cellular macromolecule metabolic process;2.7109850340431e-39!GO:0045184;establishment of protein localization;2.95408853777177e-39!GO:0044267;cellular protein metabolic process;6.86563444359284e-39!GO:0008104;protein localization;1.40369936025154e-38!GO:0006397;mRNA processing;2.40200523338987e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.5743791703726e-38!GO:0019866;organelle inner membrane;5.02919704523757e-38!GO:0031966;mitochondrial membrane;1.16712580573626e-37!GO:0010467;gene expression;5.32453740477905e-36!GO:0005743;mitochondrial inner membrane;1.0319026405995e-35!GO:0065003;macromolecular complex assembly;1.4935129584593e-35!GO:0006996;organelle organization and biogenesis;5.52304001100221e-35!GO:0046907;intracellular transport;1.54433105110236e-33!GO:0007049;cell cycle;8.58470584420944e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.98631506375018e-31!GO:0022607;cellular component assembly;2.85066524566015e-30!GO:0005654;nucleoplasm;8.85813890321952e-30!GO:0005681;spliceosome;2.25991730863615e-29!GO:0000166;nucleotide binding;9.22666896375652e-29!GO:0006886;intracellular protein transport;1.14262603099432e-28!GO:0031980;mitochondrial lumen;1.07503161400105e-27!GO:0005759;mitochondrial matrix;1.07503161400105e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.99418791554999e-26!GO:0016462;pyrophosphatase activity;2.09781728781102e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;2.97081228924139e-26!GO:0006974;response to DNA damage stimulus;7.87946184672931e-26!GO:0005730;nucleolus;9.34519228650922e-26!GO:0006119;oxidative phosphorylation;1.36334151456452e-25!GO:0044445;cytosolic part;1.98660808363595e-25!GO:0017111;nucleoside-triphosphatase activity;2.31290096666918e-25!GO:0015934;large ribosomal subunit;1.34558246440358e-24!GO:0044455;mitochondrial membrane part;1.53262756891959e-24!GO:0022402;cell cycle process;3.98590141721165e-24!GO:0000278;mitotic cell cycle;4.11933312703394e-24!GO:0044451;nucleoplasm part;1.568551366007e-23!GO:0005694;chromosome;1.80942071100787e-23!GO:0015935;small ribosomal subunit;2.53769827588511e-22!GO:0012505;endomembrane system;3.91579479713816e-22!GO:0051186;cofactor metabolic process;5.51033722150408e-22!GO:0006281;DNA repair;1.02260760479524e-21!GO:0003676;nucleic acid binding;1.03568676139163e-21!GO:0005783;endoplasmic reticulum;1.17277573380214e-21!GO:0044427;chromosomal part;1.17277573380214e-21!GO:0006457;protein folding;1.50816977014739e-21!GO:0016874;ligase activity;2.46605639416215e-21!GO:0051649;establishment of cellular localization;3.47120679984136e-21!GO:0051641;cellular localization;4.70069560792258e-21!GO:0006260;DNA replication;2.66252294048503e-20!GO:0042254;ribosome biogenesis and assembly;7.1363986309376e-20!GO:0032553;ribonucleotide binding;8.02929617592403e-20!GO:0032555;purine ribonucleotide binding;8.02929617592403e-20!GO:0017076;purine nucleotide binding;1.10615663474505e-19!GO:0009719;response to endogenous stimulus;4.45599192618563e-19!GO:0005746;mitochondrial respiratory chain;5.12640979754258e-19!GO:0022618;protein-RNA complex assembly;5.59311758731171e-19!GO:0022403;cell cycle phase;7.25207136413656e-19!GO:0005761;mitochondrial ribosome;8.03581694269881e-19!GO:0000313;organellar ribosome;8.03581694269881e-19!GO:0044432;endoplasmic reticulum part;9.36845867793677e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.47771932495134e-18!GO:0005524;ATP binding;9.8213568928557e-18!GO:0032559;adenyl ribonucleotide binding;1.24414490098284e-17!GO:0006732;coenzyme metabolic process;1.61194602043682e-17!GO:0044248;cellular catabolic process;1.95369529598174e-17!GO:0044265;cellular macromolecule catabolic process;2.11492876751546e-17!GO:0000087;M phase of mitotic cell cycle;2.57527129714733e-17!GO:0030554;adenyl nucleotide binding;2.87741694058823e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.03606530684597e-17!GO:0016887;ATPase activity;3.64400020498743e-17!GO:0007067;mitosis;4.64621407645205e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.95383697599273e-17!GO:0003954;NADH dehydrogenase activity;4.95383697599273e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.95383697599273e-17!GO:0042623;ATPase activity, coupled;1.22754613957073e-16!GO:0008135;translation factor activity, nucleic acid binding;1.50946704251423e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.05694321118934e-16!GO:0051276;chromosome organization and biogenesis;3.82322644557735e-16!GO:0006512;ubiquitin cycle;4.58278962931233e-16!GO:0006399;tRNA metabolic process;5.5261641551721e-16!GO:0051301;cell division;1.1108436551884e-15!GO:0044453;nuclear membrane part;1.23888186945734e-15!GO:0006605;protein targeting;1.48961942625082e-15!GO:0005635;nuclear envelope;1.67259748380669e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.79206041469461e-15!GO:0042773;ATP synthesis coupled electron transport;2.79206041469461e-15!GO:0051082;unfolded protein binding;4.9309657078243e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.70692765187034e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.02843166419953e-15!GO:0030964;NADH dehydrogenase complex (quinone);6.02843166419953e-15!GO:0045271;respiratory chain complex I;6.02843166419953e-15!GO:0005747;mitochondrial respiratory chain complex I;6.02843166419953e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.16586110658311e-15!GO:0031965;nuclear membrane;7.6464275637732e-15!GO:0000279;M phase;9.72170858265203e-15!GO:0019941;modification-dependent protein catabolic process;1.00663995271227e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.00663995271227e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27219282596576e-14!GO:0000375;RNA splicing, via transesterification reactions;1.27219282596576e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27219282596576e-14!GO:0044257;cellular protein catabolic process;1.43808460695402e-14!GO:0005789;endoplasmic reticulum membrane;1.63044878260062e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.80568983286444e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.40619242565787e-14!GO:0009057;macromolecule catabolic process;2.55615486682829e-14!GO:0048770;pigment granule;2.5754691531029e-14!GO:0042470;melanosome;2.5754691531029e-14!GO:0043285;biopolymer catabolic process;5.28349200041661e-14!GO:0008134;transcription factor binding;5.84422346551741e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.92403142534504e-14!GO:0006364;rRNA processing;1.0524489508654e-13!GO:0009055;electron carrier activity;1.15922047441849e-13!GO:0016072;rRNA metabolic process;2.93967713513013e-13!GO:0005643;nuclear pore;3.0277221342812e-13!GO:0000074;regulation of progression through cell cycle;4.15552765189268e-13!GO:0051726;regulation of cell cycle;4.65473462556364e-13!GO:0016070;RNA metabolic process;6.07345879000278e-13!GO:0003743;translation initiation factor activity;6.14401803804783e-13!GO:0009259;ribonucleotide metabolic process;6.78415728478644e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;7.38102250662e-13!GO:0000785;chromatin;8.16253001456065e-13!GO:0006413;translational initiation;1.7588752576691e-12!GO:0006913;nucleocytoplasmic transport;2.08503894488669e-12!GO:0048193;Golgi vesicle transport;2.32389426059496e-12!GO:0006163;purine nucleotide metabolic process;2.37063059205845e-12!GO:0006323;DNA packaging;2.40460093860271e-12!GO:0065002;intracellular protein transport across a membrane;3.24897292183897e-12!GO:0051188;cofactor biosynthetic process;4.00397007700443e-12!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.16919322712825e-12!GO:0051169;nuclear transport;6.834616075629e-12!GO:0050657;nucleic acid transport;7.58612817729775e-12!GO:0051236;establishment of RNA localization;7.58612817729775e-12!GO:0050658;RNA transport;7.58612817729775e-12!GO:0006403;RNA localization;9.194858943555e-12!GO:0012501;programmed cell death;1.33380016707354e-11!GO:0016604;nuclear body;1.446945949872e-11!GO:0004386;helicase activity;1.55635204884899e-11!GO:0006915;apoptosis;2.34374456261668e-11!GO:0030163;protein catabolic process;2.67475147538176e-11!GO:0006333;chromatin assembly or disassembly;2.71143107138727e-11!GO:0009150;purine ribonucleotide metabolic process;2.79913340114248e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.34778600096633e-11!GO:0009260;ribonucleotide biosynthetic process;3.6273527713091e-11!GO:0046930;pore complex;3.79731718188794e-11!GO:0008026;ATP-dependent helicase activity;4.61040151123594e-11!GO:0006164;purine nucleotide biosynthetic process;5.14512319844514e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.20260878204588e-11!GO:0005794;Golgi apparatus;8.71450463238791e-11!GO:0065004;protein-DNA complex assembly;9.06808150734613e-11!GO:0016491;oxidoreductase activity;1.09666914161837e-10!GO:0009117;nucleotide metabolic process;1.18423642163131e-10!GO:0006446;regulation of translational initiation;2.2333571412997e-10!GO:0007005;mitochondrion organization and biogenesis;2.39543969771744e-10!GO:0006461;protein complex assembly;2.76335541930685e-10!GO:0016192;vesicle-mediated transport;3.108039677173e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.33685626671237e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.44874330686751e-10!GO:0008219;cell death;3.69346492008782e-10!GO:0016265;death;3.69346492008782e-10!GO:0009141;nucleoside triphosphate metabolic process;4.03716628417579e-10!GO:0009060;aerobic respiration;4.39301185497313e-10!GO:0006261;DNA-dependent DNA replication;4.5517234291612e-10!GO:0008565;protein transporter activity;4.89663692074607e-10!GO:0009056;catabolic process;4.93066759907044e-10!GO:0051028;mRNA transport;4.96210724213049e-10!GO:0009108;coenzyme biosynthetic process;5.61410648070766e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.97645315238792e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.48924475125265e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.70024562331637e-10!GO:0004812;aminoacyl-tRNA ligase activity;6.70024562331637e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.70024562331637e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.36498796709631e-10!GO:0009144;purine nucleoside triphosphate metabolic process;8.36498796709631e-10!GO:0043412;biopolymer modification;8.84270997355478e-10!GO:0006366;transcription from RNA polymerase II promoter;1.19640870544205e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.24823673348516e-09!GO:0016779;nucleotidyltransferase activity;1.26787096974869e-09!GO:0015986;ATP synthesis coupled proton transport;1.26787096974869e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.26787096974869e-09!GO:0043038;amino acid activation;1.52622663463612e-09!GO:0006418;tRNA aminoacylation for protein translation;1.52622663463612e-09!GO:0043039;tRNA aminoacylation;1.52622663463612e-09!GO:0008639;small protein conjugating enzyme activity;1.67759891650609e-09!GO:0045333;cellular respiration;1.90924454827692e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.41725835903289e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.41725835903289e-09!GO:0003697;single-stranded DNA binding;2.52143359224632e-09!GO:0046034;ATP metabolic process;2.73896178317947e-09!GO:0016787;hydrolase activity;3.14634667161162e-09!GO:0017038;protein import;3.17582896051279e-09!GO:0043566;structure-specific DNA binding;4.35418254652679e-09!GO:0006334;nucleosome assembly;5.03203398624436e-09!GO:0004842;ubiquitin-protein ligase activity;5.39493181544063e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.47703263624058e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.47703263624058e-09!GO:0016607;nuclear speck;6.96343425219843e-09!GO:0019829;cation-transporting ATPase activity;7.81127254125653e-09!GO:0019787;small conjugating protein ligase activity;8.08880798541628e-09!GO:0031497;chromatin assembly;1.36644032828042e-08!GO:0006754;ATP biosynthetic process;1.74663642601422e-08!GO:0006753;nucleoside phosphate metabolic process;1.74663642601422e-08!GO:0006752;group transfer coenzyme metabolic process;1.97503823105451e-08!GO:0005793;ER-Golgi intermediate compartment;2.37304972428462e-08!GO:0006099;tricarboxylic acid cycle;2.54899026984202e-08!GO:0046356;acetyl-CoA catabolic process;2.54899026984202e-08!GO:0005819;spindle;2.69714250330258e-08!GO:0051329;interphase of mitotic cell cycle;2.76618203906514e-08!GO:0000775;chromosome, pericentric region;2.85523951077038e-08!GO:0016881;acid-amino acid ligase activity;2.87783369606106e-08!GO:0003712;transcription cofactor activity;3.14410419880096e-08!GO:0006084;acetyl-CoA metabolic process;3.22867416588207e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.15282549295116e-08!GO:0016469;proton-transporting two-sector ATPase complex;4.42454504633134e-08!GO:0051325;interphase;5.26248723536972e-08!GO:0042981;regulation of apoptosis;6.67292846039157e-08!GO:0016740;transferase activity;6.93452262292551e-08!GO:0043067;regulation of programmed cell death;7.02609161260846e-08!GO:0006464;protein modification process;8.71546458825611e-08!GO:0008033;tRNA processing;1.16167571127174e-07!GO:0006091;generation of precursor metabolites and energy;1.37129631024258e-07!GO:0005657;replication fork;1.87965488377389e-07!GO:0051187;cofactor catabolic process;2.11747672269792e-07!GO:0045259;proton-transporting ATP synthase complex;3.49557762113039e-07!GO:0003899;DNA-directed RNA polymerase activity;3.57262770452697e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.71532478554525e-07!GO:0005762;mitochondrial large ribosomal subunit;4.01282236130513e-07!GO:0000315;organellar large ribosomal subunit;4.01282236130513e-07!GO:0005768;endosome;4.12778795436851e-07!GO:0009109;coenzyme catabolic process;4.35137802394304e-07!GO:0043623;cellular protein complex assembly;4.42362056811546e-07!GO:0005667;transcription factor complex;5.80261912189492e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.51986858850807e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.74980206311365e-07!GO:0030120;vesicle coat;6.84126320858792e-07!GO:0030662;coated vesicle membrane;6.84126320858792e-07!GO:0008094;DNA-dependent ATPase activity;7.30437787557908e-07!GO:0043069;negative regulation of programmed cell death;7.49473920787617e-07!GO:0016568;chromatin modification;7.79896243925344e-07!GO:0015630;microtubule cytoskeleton;7.8158979298087e-07!GO:0000075;cell cycle checkpoint;8.90866982751877e-07!GO:0043687;post-translational protein modification;9.19728784775143e-07!GO:0032446;protein modification by small protein conjugation;9.53552414446768e-07!GO:0006916;anti-apoptosis;1.09553790729141e-06!GO:0043066;negative regulation of apoptosis;1.17749243618512e-06!GO:0009165;nucleotide biosynthetic process;1.33551808733902e-06!GO:0008654;phospholipid biosynthetic process;1.34811216604338e-06!GO:0016853;isomerase activity;1.50686091239943e-06!GO:0000245;spliceosome assembly;1.66070933556814e-06!GO:0048475;coated membrane;1.71921347404663e-06!GO:0030117;membrane coat;1.71921347404663e-06!GO:0016567;protein ubiquitination;1.74420234402358e-06!GO:0007051;spindle organization and biogenesis;1.75366965942008e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.79158808873336e-06!GO:0051427;hormone receptor binding;2.10737850893094e-06!GO:0051170;nuclear import;2.25866638775533e-06!GO:0044452;nucleolar part;2.51959454407629e-06!GO:0003724;RNA helicase activity;2.76725505144714e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;2.76725505144714e-06!GO:0004298;threonine endopeptidase activity;3.56636665285683e-06!GO:0019752;carboxylic acid metabolic process;3.63916298965689e-06!GO:0006082;organic acid metabolic process;3.65916771774049e-06!GO:0051246;regulation of protein metabolic process;3.93406203179141e-06!GO:0000314;organellar small ribosomal subunit;4.50185918040807e-06!GO:0005763;mitochondrial small ribosomal subunit;4.50185918040807e-06!GO:0048523;negative regulation of cellular process;4.64663184298736e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.65820451462869e-06!GO:0035257;nuclear hormone receptor binding;5.15790789694711e-06!GO:0051168;nuclear export;5.70427551585508e-06!GO:0046483;heterocycle metabolic process;5.94966513089416e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.82266345553901e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.27928392514456e-06!GO:0006613;cotranslational protein targeting to membrane;7.27928392514456e-06!GO:0006606;protein import into nucleus;8.4529259961879e-06!GO:0000786;nucleosome;8.58799917123776e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.4376589427317e-06!GO:0003924;GTPase activity;9.5903758884209e-06!GO:0006302;double-strand break repair;1.1389848248821e-05!GO:0005788;endoplasmic reticulum lumen;1.19916503618621e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.24965487510643e-05!GO:0015399;primary active transmembrane transporter activity;1.24965487510643e-05!GO:0003682;chromatin binding;1.27086595607236e-05!GO:0000151;ubiquitin ligase complex;1.40320068119112e-05!GO:0045454;cell redox homeostasis;2.20579203325233e-05!GO:0006414;translational elongation;2.33789552471882e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.4954514220816e-05!GO:0006626;protein targeting to mitochondrion;2.64843056414046e-05!GO:0046474;glycerophospholipid biosynthetic process;2.69037401455994e-05!GO:0008168;methyltransferase activity;3.15575821917911e-05!GO:0031324;negative regulation of cellular metabolic process;3.17236548739012e-05!GO:0005813;centrosome;3.22312268249121e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.75025599293011e-05!GO:0006839;mitochondrial transport;4.03334252121419e-05!GO:0003713;transcription coactivator activity;4.77326676775085e-05!GO:0043681;protein import into mitochondrion;5.64832098045444e-05!GO:0019867;outer membrane;5.82334109379788e-05!GO:0030867;rough endoplasmic reticulum membrane;6.19846878416973e-05!GO:0005815;microtubule organizing center;6.29181986774446e-05!GO:0005770;late endosome;6.70157361045788e-05!GO:0044440;endosomal part;6.89596532430115e-05!GO:0010008;endosome membrane;6.89596532430115e-05!GO:0051052;regulation of DNA metabolic process;6.97369829246036e-05!GO:0045786;negative regulation of progression through cell cycle;7.71706439605432e-05!GO:0043021;ribonucleoprotein binding;8.02904903214777e-05!GO:0031968;organelle outer membrane;8.09731464411139e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;8.12241773779326e-05!GO:0007088;regulation of mitosis;8.15635358643247e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.17061941479309e-05!GO:0016126;sterol biosynthetic process;8.35624471748161e-05!GO:0003690;double-stranded DNA binding;8.55070130989765e-05!GO:0051789;response to protein stimulus;8.88625363914951e-05!GO:0006986;response to unfolded protein;8.88625363914951e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.49442040753252e-05!GO:0003684;damaged DNA binding;9.56179871156325e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;9.63809309664415e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.66680223819475e-05!GO:0005525;GTP binding;9.76280571046779e-05!GO:0008186;RNA-dependent ATPase activity;9.78460217291123e-05!GO:0005773;vacuole;9.78686522911044e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000102263963231466!GO:0016859;cis-trans isomerase activity;0.000102503202226272!GO:0046489;phosphoinositide biosynthetic process;0.000103208071774446!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000104397368204061!GO:0009892;negative regulation of metabolic process;0.000106682066232358!GO:0006793;phosphorus metabolic process;0.000111887054907975!GO:0006796;phosphate metabolic process;0.000111887054907975!GO:0008610;lipid biosynthetic process;0.000112159536308596!GO:0000776;kinetochore;0.000124172060703874!GO:0050662;coenzyme binding;0.000137312878969306!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000139334571853062!GO:0048519;negative regulation of biological process;0.000147118526724021!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000152741731658329!GO:0048471;perinuclear region of cytoplasm;0.000160512305689284!GO:0004527;exonuclease activity;0.000167315960859168!GO:0005791;rough endoplasmic reticulum;0.000171418531888852!GO:0007059;chromosome segregation;0.000179662478211986!GO:0004518;nuclease activity;0.000208801297356383!GO:0006310;DNA recombination;0.000209522126862376!GO:0043284;biopolymer biosynthetic process;0.000213792271463891!GO:0000059;protein import into nucleus, docking;0.000239359520196874!GO:0044431;Golgi apparatus part;0.00026174018473593!GO:0006695;cholesterol biosynthetic process;0.000269976073109789!GO:0004004;ATP-dependent RNA helicase activity;0.000274586165907522!GO:0006612;protein targeting to membrane;0.00028086119860094!GO:0006383;transcription from RNA polymerase III promoter;0.000288391421517431!GO:0005741;mitochondrial outer membrane;0.000288466022723248!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000298582676960569!GO:0000323;lytic vacuole;0.000316102306960049!GO:0005764;lysosome;0.000316102306960049!GO:0030880;RNA polymerase complex;0.000318417236857749!GO:0016363;nuclear matrix;0.000330366923723188!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000369964566382542!GO:0005798;Golgi-associated vesicle;0.000376002791853747!GO:0008361;regulation of cell size;0.000382633484233399!GO:0043492;ATPase activity, coupled to movement of substances;0.000382831296685341!GO:0006520;amino acid metabolic process;0.000389027849939796!GO:0001558;regulation of cell growth;0.000394214263502642!GO:0048037;cofactor binding;0.000403756145344825!GO:0019843;rRNA binding;0.000413437918393485!GO:0016049;cell growth;0.000413437918393485!GO:0016310;phosphorylation;0.000423417137649795!GO:0033116;ER-Golgi intermediate compartment membrane;0.000427428309331203!GO:0009112;nucleobase metabolic process;0.000427509044826836!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000434023514463874!GO:0003678;DNA helicase activity;0.000434367740278901!GO:0042802;identical protein binding;0.000442851055160911!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000453191061184963!GO:0016563;transcription activator activity;0.00048641560647012!GO:0030176;integral to endoplasmic reticulum membrane;0.000491860271819087!GO:0051920;peroxiredoxin activity;0.000492316611124766!GO:0044262;cellular carbohydrate metabolic process;0.000495731595742452!GO:0016564;transcription repressor activity;0.000501656515610339!GO:0005048;signal sequence binding;0.000508162589226357!GO:0043596;nuclear replication fork;0.000535024804812864!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000547231172867827!GO:0005684;U2-dependent spliceosome;0.000547231172867827!GO:0031252;leading edge;0.000581361992398217!GO:0003729;mRNA binding;0.000585037561187829!GO:0006275;regulation of DNA replication;0.000585037561187829!GO:0007006;mitochondrial membrane organization and biogenesis;0.000601530926507473!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000603044394911856!GO:0006650;glycerophospholipid metabolic process;0.000615793595230006!GO:0015992;proton transport;0.000622323061009521!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000641927438692054!GO:0006818;hydrogen transport;0.000732504330799452!GO:0006284;base-excision repair;0.000753306713171638!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.000781484402849399!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000781484402849399!GO:0000428;DNA-directed RNA polymerase complex;0.000781484402849399!GO:0065009;regulation of a molecular function;0.000795656870715094!GO:0031988;membrane-bound vesicle;0.000815439201798557!GO:0005885;Arp2/3 protein complex;0.000815439201798557!GO:0031072;heat shock protein binding;0.000817778551381085!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000829074028385118!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000829074028385118!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000829074028385118!GO:0035258;steroid hormone receptor binding;0.000867670355358623!GO:0006506;GPI anchor biosynthetic process;0.00086785613858594!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000891379683325164!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000891379683325164!GO:0051087;chaperone binding;0.000954403651816307!GO:0032561;guanyl ribonucleotide binding;0.000966938303856191!GO:0019001;guanyl nucleotide binding;0.000966938303856191!GO:0006270;DNA replication initiation;0.00098797444016377!GO:0032508;DNA duplex unwinding;0.00101203388155931!GO:0032392;DNA geometric change;0.00101203388155931!GO:0016023;cytoplasmic membrane-bound vesicle;0.00102424536635258!GO:0051540;metal cluster binding;0.00103302408879038!GO:0051536;iron-sulfur cluster binding;0.00103302408879038!GO:0030132;clathrin coat of coated pit;0.00103999056855199!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00104455030166395!GO:0006007;glucose catabolic process;0.00106297957278923!GO:0006118;electron transport;0.00107697362135217!GO:0006611;protein export from nucleus;0.00110882168380456!GO:0007052;mitotic spindle organization and biogenesis;0.00113787170729883!GO:0046467;membrane lipid biosynthetic process;0.00120527441696874!GO:0003711;transcription elongation regulator activity;0.00123390336803944!GO:0006405;RNA export from nucleus;0.00125167456739446!GO:0000082;G1/S transition of mitotic cell cycle;0.0012888186250079!GO:0051287;NAD binding;0.00136092190696372!GO:0000049;tRNA binding;0.00137461889058058!GO:0009116;nucleoside metabolic process;0.00139084375047924!GO:0006505;GPI anchor metabolic process;0.00146882451395757!GO:0048487;beta-tubulin binding;0.0014895024405901!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00150245029505977!GO:0000139;Golgi membrane;0.00157670916414284!GO:0048500;signal recognition particle;0.00158298608943791!GO:0042770;DNA damage response, signal transduction;0.00161640934049969!GO:0008312;7S RNA binding;0.00162307320934066!GO:0005905;coated pit;0.00167656847491511!GO:0006401;RNA catabolic process;0.00168389446683637!GO:0008180;signalosome;0.00191063200018246!GO:0051252;regulation of RNA metabolic process;0.00202947146145784!GO:0030384;phosphoinositide metabolic process;0.00206678022877057!GO:0007093;mitotic cell cycle checkpoint;0.00210362165751886!GO:0016044;membrane organization and biogenesis;0.0021232505743959!GO:0006268;DNA unwinding during replication;0.00214194204999484!GO:0006767;water-soluble vitamin metabolic process;0.00214790153802026!GO:0030118;clathrin coat;0.00232518143840096!GO:0008632;apoptotic program;0.00236069451776689!GO:0005769;early endosome;0.00239503514306611!GO:0009451;RNA modification;0.00240882289820537!GO:0006950;response to stress;0.00252941370770588!GO:0016272;prefoldin complex;0.00252941370770588!GO:0048522;positive regulation of cellular process;0.002551889373181!GO:0008408;3'-5' exonuclease activity;0.00265292804817792!GO:0003746;translation elongation factor activity;0.00268700257600842!GO:0006497;protein amino acid lipidation;0.00269411807984848!GO:0003714;transcription corepressor activity;0.00269411807984848!GO:0005876;spindle microtubule;0.00271335825297611!GO:0030663;COPI coated vesicle membrane;0.00277505445209904!GO:0030126;COPI vesicle coat;0.00277505445209904!GO:0005637;nuclear inner membrane;0.00287661744108375!GO:0043601;nuclear replisome;0.00294033062642811!GO:0030894;replisome;0.00294033062642811!GO:0000178;exosome (RNase complex);0.00306279657219973!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00306625114010744!GO:0000096;sulfur amino acid metabolic process;0.00314747496197497!GO:0008022;protein C-terminus binding;0.00332112863525079!GO:0022890;inorganic cation transmembrane transporter activity;0.00356308993427231!GO:0040008;regulation of growth;0.00360844862739001!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00368366065927385!GO:0045047;protein targeting to ER;0.00368366065927385!GO:0000086;G2/M transition of mitotic cell cycle;0.00380158774878486!GO:0042393;histone binding;0.00380959494659853!GO:0006144;purine base metabolic process;0.00389539656094805!GO:0006595;polyamine metabolic process;0.00390417776202393!GO:0006519;amino acid and derivative metabolic process;0.0039286018480195!GO:0031982;vesicle;0.004003881731284!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00416148592015697!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00424108499022222!GO:0004532;exoribonuclease activity;0.00439023149994723!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00439023149994723!GO:0007243;protein kinase cascade;0.00439904152776288!GO:0006733;oxidoreduction coenzyme metabolic process;0.00487514963370153!GO:0006402;mRNA catabolic process;0.00503709906217315!GO:0045792;negative regulation of cell size;0.00509348961712937!GO:0016481;negative regulation of transcription;0.00516045448625669!GO:0006891;intra-Golgi vesicle-mediated transport;0.00521672452160294!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00522500321337457!GO:0015002;heme-copper terminal oxidase activity;0.00522500321337457!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00522500321337457!GO:0004129;cytochrome-c oxidase activity;0.00522500321337457!GO:0006352;transcription initiation;0.00529031915494589!GO:0006778;porphyrin metabolic process;0.00544282782243762!GO:0033013;tetrapyrrole metabolic process;0.00544282782243762!GO:0030308;negative regulation of cell growth;0.00545155144253796!GO:0005758;mitochondrial intermembrane space;0.00553357648094477!GO:0031410;cytoplasmic vesicle;0.00558103429790332!GO:0008320;protein transmembrane transporter activity;0.00560830291228573!GO:0016125;sterol metabolic process;0.00568409364426461!GO:0006066;alcohol metabolic process;0.00568409364426461!GO:0004526;ribonuclease P activity;0.00569494744199071!GO:0006509;membrane protein ectodomain proteolysis;0.00587237865951192!GO:0033619;membrane protein proteolysis;0.00587237865951192!GO:0004549;tRNA-specific ribonuclease activity;0.00640865339647704!GO:0008629;induction of apoptosis by intracellular signals;0.00647560926907383!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.006477671194902!GO:0016408;C-acyltransferase activity;0.00648533121381107!GO:0008139;nuclear localization sequence binding;0.00649940196353232!GO:0030137;COPI-coated vesicle;0.00681140492310712!GO:0031570;DNA integrity checkpoint;0.00681140492310712!GO:0000287;magnesium ion binding;0.00687764184863762!GO:0009124;nucleoside monophosphate biosynthetic process;0.00687764184863762!GO:0009123;nucleoside monophosphate metabolic process;0.00687764184863762!GO:0008637;apoptotic mitochondrial changes;0.00721686073198894!GO:0000228;nuclear chromosome;0.00739222637846619!GO:0015631;tubulin binding;0.00780749256689021!GO:0008652;amino acid biosynthetic process;0.00795519233908295!GO:0006400;tRNA modification;0.00799338997875257!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00799338997875257!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00804681846374183!GO:0030658;transport vesicle membrane;0.00808730490949655!GO:0050790;regulation of catalytic activity;0.00808730490949655!GO:0006807;nitrogen compound metabolic process;0.00808730490949655!GO:0031124;mRNA 3'-end processing;0.00809226368837158!GO:0046983;protein dimerization activity;0.00829349207151889!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00845445541673697!GO:0046982;protein heterodimerization activity;0.00860556577837769!GO:0016407;acetyltransferase activity;0.00862189065975747!GO:0006096;glycolysis;0.00880141844268254!GO:0019899;enzyme binding;0.00896266112435187!GO:0005832;chaperonin-containing T-complex;0.0093814474893255!GO:0042158;lipoprotein biosynthetic process;0.00946427188217551!GO:0051539;4 iron, 4 sulfur cluster binding;0.00964472805152513!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00973840730380945!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00973840730380945!GO:0003725;double-stranded RNA binding;0.00975850456881387!GO:0006289;nucleotide-excision repair;0.00990808251540445!GO:0009303;rRNA transcription;0.0100451284747433!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0100483476347899!GO:0030119;AP-type membrane coat adaptor complex;0.0100728903724924!GO:0043065;positive regulation of apoptosis;0.0102023546297953!GO:0007021;tubulin folding;0.0102134425870606!GO:0000922;spindle pole;0.0102402605354875!GO:0004540;ribonuclease activity;0.0103086430474662!GO:0005874;microtubule;0.0103592681867386!GO:0022884;macromolecule transmembrane transporter activity;0.0105742204730005!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0105742204730005!GO:0051338;regulation of transferase activity;0.0105742204730005!GO:0044255;cellular lipid metabolic process;0.0106209618805911!GO:0050794;regulation of cellular process;0.0106894636417159!GO:0043022;ribosome binding;0.0108701289967286!GO:0030125;clathrin vesicle coat;0.0109804519102861!GO:0030665;clathrin coated vesicle membrane;0.0109804519102861!GO:0007050;cell cycle arrest;0.0109839213653866!GO:0043154;negative regulation of caspase activity;0.0110165601902884!GO:0016251;general RNA polymerase II transcription factor activity;0.0110212385233926!GO:0000339;RNA cap binding;0.0112215305517213!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0115147916039645!GO:0050681;androgen receptor binding;0.0119696232261963!GO:0030521;androgen receptor signaling pathway;0.0120229780831972!GO:0007010;cytoskeleton organization and biogenesis;0.0120535138623817!GO:0004523;ribonuclease H activity;0.0121017349495374!GO:0043624;cellular protein complex disassembly;0.0121239503421418!GO:0006740;NADPH regeneration;0.0121239503421418!GO:0006098;pentose-phosphate shunt;0.0121239503421418!GO:0009119;ribonucleoside metabolic process;0.0122093730822338!GO:0043433;negative regulation of transcription factor activity;0.0122335247753706!GO:0030131;clathrin adaptor complex;0.0123566284151889!GO:0043068;positive regulation of programmed cell death;0.0125346698250844!GO:0004003;ATP-dependent DNA helicase activity;0.0128437832776236!GO:0000175;3'-5'-exoribonuclease activity;0.0129920556930421!GO:0005862;muscle thin filament tropomyosin;0.0132537571524014!GO:0030659;cytoplasmic vesicle membrane;0.0136362875640185!GO:0046966;thyroid hormone receptor binding;0.0136362875640185!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0137633868406982!GO:0006779;porphyrin biosynthetic process;0.0137633868406982!GO:0033014;tetrapyrrole biosynthetic process;0.0137633868406982!GO:0030660;Golgi-associated vesicle membrane;0.0137778002369647!GO:0043414;biopolymer methylation;0.0139246013048201!GO:0043549;regulation of kinase activity;0.0141426725000117!GO:0046365;monosaccharide catabolic process;0.0142737378260487!GO:0043488;regulation of mRNA stability;0.0143080771367815!GO:0043487;regulation of RNA stability;0.0143080771367815!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0143080771367815!GO:0005996;monosaccharide metabolic process;0.0143080771367815!GO:0032259;methylation;0.0143838815249555!GO:0000725;recombinational repair;0.0149434755995927!GO:0000724;double-strand break repair via homologous recombination;0.0149434755995927!GO:0007034;vacuolar transport;0.0150792955121279!GO:0030133;transport vesicle;0.0150895535221865!GO:0009308;amine metabolic process;0.0150968456885793!GO:0009161;ribonucleoside monophosphate metabolic process;0.0151793440169452!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0151793440169452!GO:0031902;late endosome membrane;0.0156825154815107!GO:0019318;hexose metabolic process;0.0158012686237532!GO:0006417;regulation of translation;0.0159839059619884!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0160885061361762!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0163575904115644!GO:0045039;protein import into mitochondrial inner membrane;0.0163575904115644!GO:0006338;chromatin remodeling;0.0163575904115644!GO:0006378;mRNA polyadenylation;0.0164093200213197!GO:0004860;protein kinase inhibitor activity;0.0165369830588047!GO:0042168;heme metabolic process;0.0166906129633929!GO:0007017;microtubule-based process;0.0169175573602954!GO:0048146;positive regulation of fibroblast proliferation;0.0174808784251672!GO:0031970;organelle envelope lumen;0.0179683161476892!GO:0003702;RNA polymerase II transcription factor activity;0.0180980475961466!GO:0005663;DNA replication factor C complex;0.0187505054021066!GO:0016788;hydrolase activity, acting on ester bonds;0.018809770515943!GO:0008234;cysteine-type peptidase activity;0.0189796977608783!GO:0044438;microbody part;0.0190374977877194!GO:0044439;peroxisomal part;0.0190374977877194!GO:0050178;phenylpyruvate tautomerase activity;0.0195711171419673!GO:0048144;fibroblast proliferation;0.0197274896524156!GO:0048145;regulation of fibroblast proliferation;0.0197274896524156!GO:0046519;sphingoid metabolic process;0.0200688444676977!GO:0017166;vinculin binding;0.0207863325847819!GO:0008538;proteasome activator activity;0.0208099942917432!GO:0031529;ruffle organization and biogenesis;0.0208540908670145!GO:0000070;mitotic sister chromatid segregation;0.0210112946203313!GO:0046164;alcohol catabolic process;0.0213192505617753!GO:0045859;regulation of protein kinase activity;0.0214107868852195!GO:0000030;mannosyltransferase activity;0.0214107868852195!GO:0007346;regulation of progression through mitotic cell cycle;0.0214685788982936!GO:0006979;response to oxidative stress;0.0216939197484795!GO:0006006;glucose metabolic process;0.0218341782703493!GO:0005669;transcription factor TFIID complex;0.0224687461504372!GO:0030508;thiol-disulfide exchange intermediate activity;0.0225595189367008!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0226996698594912!GO:0051059;NF-kappaB binding;0.0227140894633029!GO:0019320;hexose catabolic process;0.0227472175679422!GO:0032984;macromolecular complex disassembly;0.0227472175679422!GO:0006360;transcription from RNA polymerase I promoter;0.0229514435679197!GO:0031123;RNA 3'-end processing;0.0233667865120895!GO:0016197;endosome transport;0.0237983402257955!GO:0006354;RNA elongation;0.0240211122728646!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0241740835103387!GO:0045926;negative regulation of growth;0.0241928464175662!GO:0008250;oligosaccharyl transferase complex;0.0249689540316568!GO:0000819;sister chromatid segregation;0.0251427970316098!GO:0009003;signal peptidase activity;0.0255141529441684!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0256540778487668!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0257892556414432!GO:0006672;ceramide metabolic process;0.0260136493788796!GO:0000726;non-recombinational repair;0.0261974069081962!GO:0031903;microbody membrane;0.0266134525817672!GO:0005778;peroxisomal membrane;0.0266134525817672!GO:0051053;negative regulation of DNA metabolic process;0.0275169737706212!GO:0012506;vesicle membrane;0.0276317618308783!GO:0031326;regulation of cellular biosynthetic process;0.0276317618308783!GO:0000077;DNA damage checkpoint;0.0276498402010076!GO:0005869;dynactin complex;0.027800570988798!GO:0043189;H4/H2A histone acetyltransferase complex;0.027800570988798!GO:0006220;pyrimidine nucleotide metabolic process;0.0278026326544248!GO:0003923;GPI-anchor transamidase activity;0.028294489416014!GO:0016255;attachment of GPI anchor to protein;0.028294489416014!GO:0042765;GPI-anchor transamidase complex;0.028294489416014!GO:0006643;membrane lipid metabolic process;0.0283791375502615!GO:0008092;cytoskeletal protein binding;0.0285647569008114!GO:0044433;cytoplasmic vesicle part;0.0285863578022268!GO:0004659;prenyltransferase activity;0.0286078947732014!GO:0006730;one-carbon compound metabolic process;0.0290227007125057!GO:0005774;vacuolar membrane;0.029063455192103!GO:0005732;small nucleolar ribonucleoprotein complex;0.0292266915899388!GO:0006769;nicotinamide metabolic process;0.0293454303370705!GO:0043241;protein complex disassembly;0.0297281263847023!GO:0008203;cholesterol metabolic process;0.0298670455331995!GO:0006541;glutamine metabolic process;0.030581571440242!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0310600097946432!GO:0010257;NADH dehydrogenase complex assembly;0.0310600097946432!GO:0033108;mitochondrial respiratory chain complex assembly;0.0310600097946432!GO:0004576;oligosaccharyl transferase activity;0.0310600097946432!GO:0006596;polyamine biosynthetic process;0.0311090268735787!GO:0046822;regulation of nucleocytoplasmic transport;0.0313858773702033!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0316678557539527!GO:0009889;regulation of biosynthetic process;0.031767104950976!GO:0001836;release of cytochrome c from mitochondria;0.031767104950976!GO:0006376;mRNA splice site selection;0.0320071836424088!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0320071836424088!GO:0006213;pyrimidine nucleoside metabolic process;0.0322746082052417!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0324536518816247!GO:0051716;cellular response to stimulus;0.032753797810924!GO:0009066;aspartate family amino acid metabolic process;0.032753797810924!GO:0006739;NADP metabolic process;0.032753797810924!GO:0050811;GABA receptor binding;0.032753797810924!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0329196020858581!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0329196020858581!GO:0000152;nuclear ubiquitin ligase complex;0.0330038683796366!GO:0045045;secretory pathway;0.0336306569621481!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0336628055082323!GO:0022411;cellular component disassembly;0.0342094101594037!GO:0016790;thiolester hydrolase activity;0.0345029583920711!GO:0000781;chromosome, telomeric region;0.0346197425503662!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0348006924017345!GO:0004448;isocitrate dehydrogenase activity;0.0348411225368823!GO:0008536;Ran GTPase binding;0.0350051220347743!GO:0007040;lysosome organization and biogenesis;0.0355149572769118!GO:0046112;nucleobase biosynthetic process;0.0358195385400346!GO:0031625;ubiquitin protein ligase binding;0.0358709399400209!GO:0044454;nuclear chromosome part;0.0361918316359411!GO:0000910;cytokinesis;0.0361918316359411!GO:0030677;ribonuclease P complex;0.0361918316359411!GO:0030134;ER to Golgi transport vesicle;0.0364047503506716!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0365877436891313!GO:0046128;purine ribonucleoside metabolic process;0.0367235432937788!GO:0042278;purine nucleoside metabolic process;0.0367235432937788!GO:0035267;NuA4 histone acetyltransferase complex;0.0372944177367165!GO:0032200;telomere organization and biogenesis;0.0372944177367165!GO:0000723;telomere maintenance;0.0372944177367165!GO:0007041;lysosomal transport;0.0373477341271625!GO:0019783;small conjugating protein-specific protease activity;0.037476345490837!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0380732048829347!GO:0005784;translocon complex;0.0387798577086067!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0396269794281235!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0403291775801941!GO:0031406;carboxylic acid binding;0.0403565724864167!GO:0030027;lamellipodium;0.0403939662820741!GO:0045893;positive regulation of transcription, DNA-dependent;0.0406660843117176!GO:0006783;heme biosynthetic process;0.0412579968088961!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0415117968556217!GO:0030127;COPII vesicle coat;0.0415836587012501!GO:0012507;ER to Golgi transport vesicle membrane;0.0415836587012501!GO:0030032;lamellipodium biogenesis;0.0416659533091489!GO:0019206;nucleoside kinase activity;0.0418125102912347!GO:0004843;ubiquitin-specific protease activity;0.0423640973519023!GO:0016417;S-acyltransferase activity;0.0427096472352083!GO:0000792;heterochromatin;0.0427626868947046!GO:0005971;ribonucleoside-diphosphate reductase complex;0.0429629585419007!GO:0008426;protein kinase C inhibitor activity;0.0431117510621403!GO:0009396;folic acid and derivative biosynthetic process;0.043148837242917!GO:0015036;disulfide oxidoreductase activity;0.0433041021316221!GO:0005658;alpha DNA polymerase:primase complex;0.0434909955793648!GO:0030433;ER-associated protein catabolic process;0.0435189608192934!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0435189608192934!GO:0030503;regulation of cell redox homeostasis;0.0443571223208201!GO:0030911;TPR domain binding;0.0447245771752718!GO:0005777;peroxisome;0.0449462726053003!GO:0042579;microbody;0.0449462726053003!GO:0008017;microtubule binding;0.0449462726053003!GO:0003756;protein disulfide isomerase activity;0.0449603873993653!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0449603873993653!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.044960582313545!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.044960582313545!GO:0045267;proton-transporting ATP synthase, catalytic core;0.044960582313545!GO:0031371;ubiquitin conjugating enzyme complex;0.044960582313545!GO:0006629;lipid metabolic process;0.0451052707409634!GO:0016860;intramolecular oxidoreductase activity;0.0452173722203093!GO:0009967;positive regulation of signal transduction;0.0454797818127936!GO:0009225;nucleotide-sugar metabolic process;0.0455887731975783!GO:0045936;negative regulation of phosphate metabolic process;0.0456682891421797!GO:0019362;pyridine nucleotide metabolic process;0.045790478028574!GO:0004748;ribonucleoside-diphosphate reductase activity;0.045885205273434!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.045885205273434!GO:0016453;C-acetyltransferase activity;0.046299959987544!GO:0000097;sulfur amino acid biosynthetic process;0.0468104516194516!GO:0004536;deoxyribonuclease activity;0.0472767198491032!GO:0008287;protein serine/threonine phosphatase complex;0.0472767198491032!GO:0006518;peptide metabolic process;0.047374740117256!GO:0001726;ruffle;0.0474793718927807!GO:0001522;pseudouridine synthesis;0.0475665719213489!GO:0009067;aspartate family amino acid biosynthetic process;0.0475705456296408!GO:0009081;branched chain family amino acid metabolic process;0.047713578269779!GO:0008299;isoprenoid biosynthetic process;0.0481034561711792!GO:0006458;'de novo' protein folding;0.0481034561711792!GO:0051084;'de novo' posttranslational protein folding;0.0481034561711792!GO:0018196;peptidyl-asparagine modification;0.0481034561711792!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0481034561711792!GO:0006644;phospholipid metabolic process;0.0483218358147205!GO:0008601;protein phosphatase type 2A regulator activity;0.0484311525098276!GO:0042769;DNA damage response, detection of DNA damage;0.048650161149849!GO:0016791;phosphoric monoester hydrolase activity;0.0486978315775447!GO:0051128;regulation of cellular component organization and biogenesis;0.0487027954368489 | |||
|sample_id=11891 | |sample_id=11891 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=ESRRA:1.81748395725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.79285064137;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.61347357106;HES1:1.61100618428;E2F1..5:1.57919546816;PPARG:1.50618086821;FOXM1:1.47030653359;ELK1,4_GABP{A,B1}:1.21476733065;HIF1A:1.18095701727;NR5A1,2:1.1629818906;FOXQ1:1.16225315738;bHLH_family:0.974236031262;HOX{A6,A7,B6,B7}:0.868978044402;NR6A1:0.850773417963;NRF1:0.84814066537;PAX1,9:0.833979207962;YY1:0.769191752183;NKX3-2:0.759650661298;MYB:0.698228942488;NFY{A,B,C}:0.653945843184;ZNF143:0.650673118898;HNF4A_NR2F1,2:0.608207086305;SNAI1..3:0.603558290676;FOXN1:0.582658290354;PAX8:0.576062360257;GCM1,2:0.541875890336;PAX5:0.536303357533;POU1F1:0.53387260431;TEAD1:0.529519508713;NKX3-1:0.496538768465;TFDP1:0.462983284401;ZNF148:0.438930552822;IRF7:0.409793904686;NFE2L1:0.395535777728;ZEB1:0.379512486637;TBX4,5:0.379421589502;FOXD3:0.364527725829;MYOD1:0.355600789306;ARID5B:0.349514193514;VSX1,2:0.344665490519;HOX{A5,B5}:0.319400404721;LEF1_TCF7_TCF7L1,2:0.318934916543;RXR{A,B,G}:0.317269870726;FOXL1:0.305979507818;TP53:0.279442892833;BREu{core}:0.269953657765;EP300:0.269865428494;UFEwm:0.263191776701;IKZF1:0.209584114365;MYBL2:0.185157853894;GZF1:0.166361705417;CUX2:0.165893400371;CREB1:0.15743277155;GTF2A1,2:0.151918313738;PAX3,7:0.124577552893;RORA:0.122668909648;SOX{8,9,10}:0.0781176938541;ZNF423:0.0763368302251;MTF1:0.0750267151765;TEF:0.0616113036675;GFI1:0.0454593073714;HOXA9_MEIS1:0.0314343335654;FOX{I1,J2}:0.0110723580465;NFE2:0.0103248362435;PAX2:0.00305482674719;HLF:0.00203188199769;HSF1,2:-0.000919897107634;ALX4:-0.00180239809222;HNF1A:-0.00490371090153;NFE2L2:-0.00617331063664;GFI1B:-0.0063356840373;RFX2..5_RFXANK_RFXAP:-0.00911209057487;ZNF384:-0.0154689514627;PDX1:-0.0211724061678;BACH2:-0.0228586495835;LHX3,4:-0.0257362645379;FOS_FOS{B,L1}_JUN{B,D}:-0.0413996693145;EN1,2:-0.0467013258183;OCT4_SOX2{dimer}:-0.0501563837985;FOX{F1,F2,J1}:-0.0603533453311;ZBTB16:-0.0709638778629;NKX6-1,2:-0.0884538460921;AHR_ARNT_ARNT2:-0.0895445124317;ONECUT1,2:-0.0914988610864;ATF5_CREB3:-0.0962317161561;CEBPA,B_DDIT3:-0.0980383077389;POU2F1..3:-0.105782021555;NR1H4:-0.120005138553;PITX1..3:-0.153314508149;HOX{A4,D4}:-0.165118025245;TFAP2{A,C}:-0.167077002073;T:-0.178757516687;NR3C1:-0.180857223505;NANOG:-0.187257207873;ZBTB6:-0.187608706661;TBP:-0.189584583957;PRRX1,2:-0.193096864906;MEF2{A,B,C,D}:-0.209500134823;TLX1..3_NFIC{dimer}:-0.218912974493;LMO2:-0.219274870723;CDC5L:-0.228346264509;POU3F1..4:-0.231504248064;HAND1,2:-0.237849337423;EBF1:-0.243963356607;IKZF2:-0.26833977539;STAT2,4,6:-0.272770351576;TFCP2:-0.295924630694;ELF1,2,4:-0.29774647453;ATF4:-0.298524468625;NFKB1_REL_RELA:-0.299466159717;CRX:-0.300955951526;RXRA_VDR{dimer}:-0.304977723388;STAT5{A,B}:-0.312182413129;HBP1_HMGB_SSRP1_UBTF:-0.324588826705;ZFP161:-0.332906492734;CDX1,2,4:-0.333329029344;PBX1:-0.336194621676;ATF6:-0.356743975762;FOSL2:-0.366746661244;NFIL3:-0.376822486107;TFAP2B:-0.381514840133;HIC1:-0.385902628388;KLF4:-0.40234258545;JUN:-0.414977925481;BPTF:-0.437961469326;ESR1:-0.446629032336;IRF1,2:-0.449102578657;GATA6:-0.454911149459;GTF2I:-0.46141937904;DBP:-0.471440469203;SPIB:-0.473782738841;SP1:-0.49445857634;SREBF1,2:-0.500869714054;EVI1:-0.506808205993;NKX2-1,4:-0.508807050202;RFX1:-0.514312246602;GLI1..3:-0.532308270677;HMGA1,2:-0.549733469299;POU5F1:-0.55881919379;PAX4:-0.559289484949;FOXP3:-0.570861639327;SRF:-0.590833935563;ADNP_IRX_SIX_ZHX:-0.600207247757;SOX5:-0.609288366114;NKX2-2,8:-0.611836055675;PAX6:-0.628611802172;SOX17:-0.63039012522;EGR1..3:-0.632584065912;SPI1:-0.633513870442;REST:-0.639027852901;MAFB:-0.642594315061;POU6F1:-0.647921016725;NHLH1,2:-0.65006448073;RBPJ:-0.659003068497;ZIC1..3:-0.671679146648;RUNX1..3:-0.674372740461;MED-1{core}:-0.680420031166;FOXP1:-0.680532512746;SOX2:-0.697027513228;MTE{core}:-0.699214313347;FOXA2:-0.709995200098;ETS1,2:-0.720704886792;TFAP4:-0.726627392024;AIRE:-0.726921920329;ALX1:-0.733859956843;AR:-0.774396414708;ZNF238:-0.7796695623;NFATC1..3:-0.795221064959;NKX2-3_NKX2-5:-0.82284312059;TAL1_TCF{3,4,12}:-0.843707009563;XCPE1{core}:-0.847372257481;MAZ:-0.848104290621;ATF2:-0.893845521577;XBP1:-0.916479033755;FOX{D1,D2}:-0.949449617094;STAT1,3:-0.980527158714;MYFfamily:-0.986307935911;RREB1:-0.996912014516;NFIX:-0.999294865787;DMAP1_NCOR{1,2}_SMARC:-1.02335465848;TOPORS:-1.02474396718;GATA4:-1.02822929682;SMAD1..7,9:-1.0400436417;FOXO1,3,4:-1.05844864851;PRDM1:-1.15365297043;TLX2:-1.2103409419;MZF1:-1.27234322531;TGIF1:-1.30903376119;PATZ1:-1.33862185655;HMX1:-1.43032143689;NANOG{mouse}:-1.83559204556;SPZ1:-1.89297119813 | |top_motifs=ESRRA:1.81748395725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.79285064137;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.61347357106;HES1:1.61100618428;E2F1..5:1.57919546816;PPARG:1.50618086821;FOXM1:1.47030653359;ELK1,4_GABP{A,B1}:1.21476733065;HIF1A:1.18095701727;NR5A1,2:1.1629818906;FOXQ1:1.16225315738;bHLH_family:0.974236031262;HOX{A6,A7,B6,B7}:0.868978044402;NR6A1:0.850773417963;NRF1:0.84814066537;PAX1,9:0.833979207962;YY1:0.769191752183;NKX3-2:0.759650661298;MYB:0.698228942488;NFY{A,B,C}:0.653945843184;ZNF143:0.650673118898;HNF4A_NR2F1,2:0.608207086305;SNAI1..3:0.603558290676;FOXN1:0.582658290354;PAX8:0.576062360257;GCM1,2:0.541875890336;PAX5:0.536303357533;POU1F1:0.53387260431;TEAD1:0.529519508713;NKX3-1:0.496538768465;TFDP1:0.462983284401;ZNF148:0.438930552822;IRF7:0.409793904686;NFE2L1:0.395535777728;ZEB1:0.379512486637;TBX4,5:0.379421589502;FOXD3:0.364527725829;MYOD1:0.355600789306;ARID5B:0.349514193514;VSX1,2:0.344665490519;HOX{A5,B5}:0.319400404721;LEF1_TCF7_TCF7L1,2:0.318934916543;RXR{A,B,G}:0.317269870726;FOXL1:0.305979507818;TP53:0.279442892833;BREu{core}:0.269953657765;EP300:0.269865428494;UFEwm:0.263191776701;IKZF1:0.209584114365;MYBL2:0.185157853894;GZF1:0.166361705417;CUX2:0.165893400371;CREB1:0.15743277155;GTF2A1,2:0.151918313738;PAX3,7:0.124577552893;RORA:0.122668909648;SOX{8,9,10}:0.0781176938541;ZNF423:0.0763368302251;MTF1:0.0750267151765;TEF:0.0616113036675;GFI1:0.0454593073714;HOXA9_MEIS1:0.0314343335654;FOX{I1,J2}:0.0110723580465;NFE2:0.0103248362435;PAX2:0.00305482674719;HLF:0.00203188199769;HSF1,2:-0.000919897107634;ALX4:-0.00180239809222;HNF1A:-0.00490371090153;NFE2L2:-0.00617331063664;GFI1B:-0.0063356840373;RFX2..5_RFXANK_RFXAP:-0.00911209057487;ZNF384:-0.0154689514627;PDX1:-0.0211724061678;BACH2:-0.0228586495835;LHX3,4:-0.0257362645379;FOS_FOS{B,L1}_JUN{B,D}:-0.0413996693145;EN1,2:-0.0467013258183;OCT4_SOX2{dimer}:-0.0501563837985;FOX{F1,F2,J1}:-0.0603533453311;ZBTB16:-0.0709638778629;NKX6-1,2:-0.0884538460921;AHR_ARNT_ARNT2:-0.0895445124317;ONECUT1,2:-0.0914988610864;ATF5_CREB3:-0.0962317161561;CEBPA,B_DDIT3:-0.0980383077389;POU2F1..3:-0.105782021555;NR1H4:-0.120005138553;PITX1..3:-0.153314508149;HOX{A4,D4}:-0.165118025245;TFAP2{A,C}:-0.167077002073;T:-0.178757516687;NR3C1:-0.180857223505;NANOG:-0.187257207873;ZBTB6:-0.187608706661;TBP:-0.189584583957;PRRX1,2:-0.193096864906;MEF2{A,B,C,D}:-0.209500134823;TLX1..3_NFIC{dimer}:-0.218912974493;LMO2:-0.219274870723;CDC5L:-0.228346264509;POU3F1..4:-0.231504248064;HAND1,2:-0.237849337423;EBF1:-0.243963356607;IKZF2:-0.26833977539;STAT2,4,6:-0.272770351576;TFCP2:-0.295924630694;ELF1,2,4:-0.29774647453;ATF4:-0.298524468625;NFKB1_REL_RELA:-0.299466159717;CRX:-0.300955951526;RXRA_VDR{dimer}:-0.304977723388;STAT5{A,B}:-0.312182413129;HBP1_HMGB_SSRP1_UBTF:-0.324588826705;ZFP161:-0.332906492734;CDX1,2,4:-0.333329029344;PBX1:-0.336194621676;ATF6:-0.356743975762;FOSL2:-0.366746661244;NFIL3:-0.376822486107;TFAP2B:-0.381514840133;HIC1:-0.385902628388;KLF4:-0.40234258545;JUN:-0.414977925481;BPTF:-0.437961469326;ESR1:-0.446629032336;IRF1,2:-0.449102578657;GATA6:-0.454911149459;GTF2I:-0.46141937904;DBP:-0.471440469203;SPIB:-0.473782738841;SP1:-0.49445857634;SREBF1,2:-0.500869714054;EVI1:-0.506808205993;NKX2-1,4:-0.508807050202;RFX1:-0.514312246602;GLI1..3:-0.532308270677;HMGA1,2:-0.549733469299;POU5F1:-0.55881919379;PAX4:-0.559289484949;FOXP3:-0.570861639327;SRF:-0.590833935563;ADNP_IRX_SIX_ZHX:-0.600207247757;SOX5:-0.609288366114;NKX2-2,8:-0.611836055675;PAX6:-0.628611802172;SOX17:-0.63039012522;EGR1..3:-0.632584065912;SPI1:-0.633513870442;REST:-0.639027852901;MAFB:-0.642594315061;POU6F1:-0.647921016725;NHLH1,2:-0.65006448073;RBPJ:-0.659003068497;ZIC1..3:-0.671679146648;RUNX1..3:-0.674372740461;MED-1{core}:-0.680420031166;FOXP1:-0.680532512746;SOX2:-0.697027513228;MTE{core}:-0.699214313347;FOXA2:-0.709995200098;ETS1,2:-0.720704886792;TFAP4:-0.726627392024;AIRE:-0.726921920329;ALX1:-0.733859956843;AR:-0.774396414708;ZNF238:-0.7796695623;NFATC1..3:-0.795221064959;NKX2-3_NKX2-5:-0.82284312059;TAL1_TCF{3,4,12}:-0.843707009563;XCPE1{core}:-0.847372257481;MAZ:-0.848104290621;ATF2:-0.893845521577;XBP1:-0.916479033755;FOX{D1,D2}:-0.949449617094;STAT1,3:-0.980527158714;MYFfamily:-0.986307935911;RREB1:-0.996912014516;NFIX:-0.999294865787;DMAP1_NCOR{1,2}_SMARC:-1.02335465848;TOPORS:-1.02474396718;GATA4:-1.02822929682;SMAD1..7,9:-1.0400436417;FOXO1,3,4:-1.05844864851;PRDM1:-1.15365297043;TLX2:-1.2103409419;MZF1:-1.27234322531;TGIF1:-1.30903376119;PATZ1:-1.33862185655;HMX1:-1.43032143689;NANOG{mouse}:-1.83559204556;SPZ1:-1.89297119813 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11891-125E1;search_select_hide=table117:FF:11891-125E1 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | Hep-2 cells treated with Streptococci strain 5448, biol_rep2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13496 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13496
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13496
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.117 |
10 | 10 | 0.117 |
100 | 100 | 0.035 |
101 | 101 | 0.176 |
102 | 102 | 0.686 |
103 | 103 | 0.784 |
104 | 104 | 0.838 |
105 | 105 | 0.245 |
106 | 106 | 0.013 |
107 | 107 | 0.182 |
108 | 108 | 0.537 |
109 | 109 | 6.7025e-4 |
11 | 11 | 0.84 |
110 | 110 | 0.333 |
111 | 111 | 0.517 |
112 | 112 | 0.232 |
113 | 113 | 0.00269 |
114 | 114 | 0.774 |
115 | 115 | 0.837 |
116 | 116 | 0.421 |
117 | 117 | 0.263 |
118 | 118 | 0.227 |
119 | 119 | 0.995 |
12 | 12 | 0.546 |
120 | 120 | 0.0601 |
121 | 121 | 0.318 |
122 | 122 | 0.132 |
123 | 123 | 0.161 |
124 | 124 | 0.842 |
125 | 125 | 0.736 |
126 | 126 | 0.799 |
127 | 127 | 0.112 |
128 | 128 | 1.14153e-4 |
129 | 129 | 0.472 |
13 | 13 | 7.60177e-5 |
130 | 130 | 0.319 |
131 | 131 | 0.473 |
132 | 132 | 0.379 |
133 | 133 | 0.134 |
134 | 134 | 0.851 |
135 | 135 | 0.192 |
136 | 136 | 0.00261 |
137 | 137 | 0.225 |
138 | 138 | 0.79 |
139 | 139 | 0.0428 |
14 | 14 | 0.439 |
140 | 140 | 0.184 |
141 | 141 | 0.537 |
142 | 142 | 0.673 |
143 | 143 | 0.261 |
144 | 144 | 0.356 |
145 | 145 | 0.149 |
146 | 146 | 0.962 |
147 | 147 | 0.624 |
148 | 148 | 0.55 |
149 | 149 | 0.542 |
15 | 15 | 0.507 |
150 | 150 | 0.717 |
151 | 151 | 0.736 |
152 | 152 | 0.771 |
153 | 153 | 0.525 |
154 | 154 | 0.339 |
155 | 155 | 0.632 |
156 | 156 | 0.0379 |
157 | 157 | 0.0843 |
158 | 158 | 0.138 |
159 | 159 | 0.147 |
16 | 16 | 0.859 |
160 | 160 | 0.375 |
161 | 161 | 0.529 |
162 | 162 | 0.657 |
163 | 163 | 0.18 |
164 | 164 | 0.0251 |
165 | 165 | 0.848 |
166 | 166 | 0.0349 |
167 | 167 | 0.295 |
168 | 168 | 0.27 |
169 | 169 | 0.327 |
17 | 17 | 0.818 |
18 | 18 | 0.177 |
19 | 19 | 0.755 |
2 | 2 | 0.535 |
20 | 20 | 0.141 |
21 | 21 | 0.634 |
22 | 22 | 0.935 |
23 | 23 | 0.00734 |
24 | 24 | 0.782 |
25 | 25 | 0.186 |
26 | 26 | 0.738 |
27 | 27 | 0.964 |
28 | 28 | 0.815 |
29 | 29 | 0.0336 |
3 | 3 | 0.458 |
30 | 30 | 0.557 |
31 | 31 | 0.527 |
32 | 32 | 0.0429 |
33 | 33 | 0.164 |
34 | 34 | 0.222 |
35 | 35 | 0.607 |
36 | 36 | 0.113 |
37 | 37 | 0.462 |
38 | 38 | 0.694 |
39 | 39 | 0.934 |
4 | 4 | 0.269 |
40 | 40 | 0.00964 |
41 | 41 | 0.197 |
42 | 42 | 0.978 |
43 | 43 | 0.407 |
44 | 44 | 0.063 |
45 | 45 | 0.191 |
46 | 46 | 0.468 |
47 | 47 | 0.403 |
48 | 48 | 0.424 |
49 | 49 | 0.213 |
5 | 5 | 0.235 |
50 | 50 | 0.906 |
51 | 51 | 0.593 |
52 | 52 | 0.318 |
53 | 53 | 0.0743 |
54 | 54 | 0.419 |
55 | 55 | 0.0375 |
56 | 56 | 0.977 |
57 | 57 | 0.538 |
58 | 58 | 0.945 |
59 | 59 | 0.904 |
6 | 6 | 0.956 |
60 | 60 | 0.497 |
61 | 61 | 0.0817 |
62 | 62 | 0.737 |
63 | 63 | 0.678 |
64 | 64 | 0.807 |
65 | 65 | 0.497 |
66 | 66 | 0.489 |
67 | 67 | 0.218 |
68 | 68 | 0.561 |
69 | 69 | 0.894 |
7 | 7 | 0.0112 |
70 | 70 | 0.252 |
71 | 71 | 0.0641 |
72 | 72 | 0.936 |
73 | 73 | 0.372 |
74 | 74 | 0.0698 |
75 | 75 | 0.188 |
76 | 76 | 0.25 |
77 | 77 | 0.759 |
78 | 78 | 0.315 |
79 | 79 | 0.552 |
8 | 8 | 0.118 |
80 | 80 | 0.0785 |
81 | 81 | 0.243 |
82 | 82 | 0.0469 |
83 | 83 | 0.751 |
84 | 84 | 0.274 |
85 | 85 | 0.0366 |
86 | 86 | 0.665 |
87 | 87 | 0.00414 |
88 | 88 | 0.82 |
89 | 89 | 0.764 |
9 | 9 | 0.54 |
90 | 90 | 0.0107 |
91 | 91 | 0.0451 |
92 | 92 | 0.118 |
93 | 93 | 0.234 |
94 | 94 | 0.328 |
95 | 95 | 0.0118 |
96 | 96 | 0.366 |
97 | 97 | 0.793 |
98 | 98 | 0.869 |
99 | 99 | 0.613 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13496
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011133 human Hep-2 cells treated with Streptococci strain 5448 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000638 (Streptococcus strain 5448 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011133 (human Hep-2 cells treated with Streptococci strain 5448 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)