FF:10020-101D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005233 | ||
|accession_numbers=CAGE;DRX008697;DRR009569;DRZ000994;DRZ002379;DRZ012344;DRZ013729 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010020 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10020-101D2 | |id=FF:10020-101D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010020 | ||
|is_obsolete= | |||
|library_id=CNhs10626 | |||
|library_id_phase_based=2:CNhs10626 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10020 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10020 | |||
|name=ovary, adult, pool1 | |name=ovary, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10626,LSID657,release008,COMPLETED | |profile_hcage=CNhs10626,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -11 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -11 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=mixed | |sample_ethnicity=mixed | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.65594783256263e-219!GO:0043226;organelle;1.34418444297707e-149!GO:0005737;cytoplasm;1.76154915185793e-149!GO:0043229;intracellular organelle;2.06924841310646e-149!GO:0043231;intracellular membrane-bound organelle;2.06924841310646e-149!GO:0043227;membrane-bound organelle;2.06924841310646e-149!GO:0044444;cytoplasmic part;1.00323600101136e-96!GO:0005515;protein binding;1.22089409854016e-95!GO:0044422;organelle part;9.36987368188465e-78!GO:0044446;intracellular organelle part;1.78711050333716e-76!GO:0044238;primary metabolic process;1.17378448975297e-65!GO:0044237;cellular metabolic process;9.88538778549816e-63!GO:0005634;nucleus;1.67770194040451e-62!GO:0043170;macromolecule metabolic process;1.67770194040451e-62!GO:0032991;macromolecular complex;1.31255554714074e-60!GO:0030529;ribonucleoprotein complex;3.0597809345781e-55!GO:0003723;RNA binding;2.13286728020474e-53!GO:0044428;nuclear part;9.29724662820131e-51!GO:0043233;organelle lumen;1.28426255739665e-50!GO:0031974;membrane-enclosed lumen;1.28426255739665e-50!GO:0016043;cellular component organization and biogenesis;8.01998670969592e-46!GO:0010467;gene expression;3.22671334867276e-40!GO:0033036;macromolecule localization;8.56276007684186e-38!GO:0015031;protein transport;4.16655284541849e-37!GO:0019538;protein metabolic process;6.90923573140145e-36!GO:0043283;biopolymer metabolic process;2.44651040850596e-35!GO:0045184;establishment of protein localization;1.11690872895305e-34!GO:0005739;mitochondrion;1.7196187007667e-34!GO:0008104;protein localization;1.91490126926688e-34!GO:0031090;organelle membrane;3.13797854230894e-34!GO:0006396;RNA processing;8.19603739547409e-33!GO:0016071;mRNA metabolic process;5.16399722147293e-32!GO:0031981;nuclear lumen;8.97701042179337e-32!GO:0044260;cellular macromolecule metabolic process;6.48714760603275e-31!GO:0005840;ribosome;2.79023669645005e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.77718272242e-30!GO:0044267;cellular protein metabolic process;6.80437078868303e-30!GO:0043234;protein complex;1.21658619632723e-29!GO:0008380;RNA splicing;4.0756720827188e-29!GO:0005829;cytosol;8.07534998372503e-29!GO:0006412;translation;1.19985714145113e-28!GO:0046907;intracellular transport;2.67566958954406e-28!GO:0006397;mRNA processing;6.94696426577645e-27!GO:0031967;organelle envelope;1.20715653144887e-26!GO:0031975;envelope;1.66098827250561e-26!GO:0003735;structural constituent of ribosome;1.25710021301501e-25!GO:0006886;intracellular protein transport;2.33358833092266e-25!GO:0065003;macromolecular complex assembly;2.82817348834335e-25!GO:0044429;mitochondrial part;1.71281813904951e-24!GO:0008134;transcription factor binding;3.38339429445907e-24!GO:0033279;ribosomal subunit;3.01831776744732e-23!GO:0022607;cellular component assembly;8.15946231552658e-23!GO:0016070;RNA metabolic process;6.893165948151e-22!GO:0003676;nucleic acid binding;2.51269893846775e-21!GO:0009058;biosynthetic process;5.66179964385376e-21!GO:0009059;macromolecule biosynthetic process;7.38656708516701e-21!GO:0005681;spliceosome;8.0515180426769e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.84872359775731e-20!GO:0005654;nucleoplasm;8.44931321001352e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.71747680130976e-19!GO:0044249;cellular biosynthetic process;1.98528757662789e-19!GO:0051649;establishment of cellular localization;1.27010017112652e-18!GO:0006996;organelle organization and biogenesis;1.69383771480017e-18!GO:0051641;cellular localization;2.75150911558228e-18!GO:0050794;regulation of cellular process;5.66784671610638e-18!GO:0048770;pigment granule;6.26710272527811e-18!GO:0042470;melanosome;6.26710272527811e-18!GO:0044451;nucleoplasm part;4.79083481737612e-17!GO:0005740;mitochondrial envelope;4.95215377583074e-17!GO:0044445;cytosolic part;1.27473636858379e-16!GO:0031966;mitochondrial membrane;1.85559901133632e-16!GO:0005794;Golgi apparatus;2.66147374100602e-16!GO:0019866;organelle inner membrane;3.16353076110242e-16!GO:0003712;transcription cofactor activity;3.16353076110242e-16!GO:0050789;regulation of biological process;6.3831171183485e-16!GO:0005783;endoplasmic reticulum;9.94397356904037e-16!GO:0016192;vesicle-mediated transport;1.38190447052897e-15!GO:0048523;negative regulation of cellular process;3.19756708792242e-15!GO:0005743;mitochondrial inner membrane;5.09858827041632e-15!GO:0006457;protein folding;1.28972708295372e-14!GO:0012505;endomembrane system;1.32600008035545e-14!GO:0006366;transcription from RNA polymerase II promoter;1.48218269903172e-14!GO:0043228;non-membrane-bound organelle;1.80107360774669e-14!GO:0043232;intracellular non-membrane-bound organelle;1.80107360774669e-14!GO:0048193;Golgi vesicle transport;3.25386782566094e-14!GO:0000166;nucleotide binding;4.74772762594164e-14!GO:0006119;oxidative phosphorylation;6.4998011606746e-14!GO:0022618;protein-RNA complex assembly;8.5249482773873e-14!GO:0006605;protein targeting;2.5926491915287e-13!GO:0048519;negative regulation of biological process;3.68524795314704e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.97802584692045e-13!GO:0006511;ubiquitin-dependent protein catabolic process;6.16472555042361e-13!GO:0019941;modification-dependent protein catabolic process;7.80651609461935e-13!GO:0043632;modification-dependent macromolecule catabolic process;7.80651609461935e-13!GO:0005730;nucleolus;8.03824149294676e-13!GO:0015935;small ribosomal subunit;1.00590620180143e-12!GO:0044265;cellular macromolecule catabolic process;1.28587932019263e-12!GO:0044257;cellular protein catabolic process;1.65163382621064e-12!GO:0006512;ubiquitin cycle;2.92706055800822e-12!GO:0016874;ligase activity;5.54290612593307e-12!GO:0043285;biopolymer catabolic process;6.67329407737741e-12!GO:0016564;transcription repressor activity;1.6206289261323e-11!GO:0044455;mitochondrial membrane part;1.6724777129624e-11!GO:0015934;large ribosomal subunit;1.86843151875956e-11!GO:0017111;nucleoside-triphosphatase activity;1.94250793060899e-11!GO:0006913;nucleocytoplasmic transport;1.94871126143661e-11!GO:0016462;pyrophosphatase activity;1.94871126143661e-11!GO:0065007;biological regulation;2.08780679261184e-11!GO:0008135;translation factor activity, nucleic acid binding;2.60794180876445e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.60794180876445e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;3.52592147105002e-11!GO:0016604;nuclear body;5.68833818159156e-11!GO:0051169;nuclear transport;6.78021611823217e-11!GO:0000502;proteasome complex (sensu Eukaryota);9.82114282428045e-11!GO:0008565;protein transporter activity;1.22781498009516e-10!GO:0044432;endoplasmic reticulum part;1.5849465599348e-10!GO:0005635;nuclear envelope;1.61859968041413e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.67528984290706e-10!GO:0051082;unfolded protein binding;2.53293265194399e-10!GO:0031980;mitochondrial lumen;3.16288771516301e-10!GO:0005759;mitochondrial matrix;3.16288771516301e-10!GO:0030163;protein catabolic process;3.33179796426545e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.47802174877532e-10!GO:0000375;RNA splicing, via transesterification reactions;3.47802174877532e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.47802174877532e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.7370306740753e-10!GO:0012501;programmed cell death;5.34425460984336e-10!GO:0009057;macromolecule catabolic process;5.41483313252557e-10!GO:0006259;DNA metabolic process;7.73496607461806e-10!GO:0031965;nuclear membrane;1.13882370917289e-09!GO:0005746;mitochondrial respiratory chain;1.16040616134296e-09!GO:0006461;protein complex assembly;1.53564451262292e-09!GO:0006915;apoptosis;1.55915400616973e-09!GO:0016607;nuclear speck;1.58697568776771e-09!GO:0043412;biopolymer modification;1.70932809144448e-09!GO:0003714;transcription corepressor activity;1.86799232102818e-09!GO:0019222;regulation of metabolic process;1.94798171689985e-09!GO:0008219;cell death;1.99590802654906e-09!GO:0016265;death;1.99590802654906e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.61791031150594e-09!GO:0050136;NADH dehydrogenase (quinone) activity;4.76429379389848e-09!GO:0003954;NADH dehydrogenase activity;4.76429379389848e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.76429379389848e-09!GO:0017038;protein import;5.14807961785242e-09!GO:0006446;regulation of translational initiation;5.42559347661234e-09!GO:0044248;cellular catabolic process;6.25260855901762e-09!GO:0003743;translation initiation factor activity;6.86344710099992e-09!GO:0030036;actin cytoskeleton organization and biogenesis;9.27184601926575e-09!GO:0031324;negative regulation of cellular metabolic process;9.50523411649724e-09!GO:0008361;regulation of cell size;1.03690493078688e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.07771934067025e-08!GO:0006464;protein modification process;1.11458904277073e-08!GO:0005793;ER-Golgi intermediate compartment;1.11458904277073e-08!GO:0003713;transcription coactivator activity;1.28289641225776e-08!GO:0016049;cell growth;1.30979676087588e-08!GO:0032553;ribonucleotide binding;1.31587015253541e-08!GO:0032555;purine ribonucleotide binding;1.31587015253541e-08!GO:0043687;post-translational protein modification;1.44929535950306e-08!GO:0016563;transcription activator activity;1.454798943038e-08!GO:0017076;purine nucleotide binding;1.81632477789531e-08!GO:0031982;vesicle;1.89826684549919e-08!GO:0006413;translational initiation;2.82297533525421e-08!GO:0031988;membrane-bound vesicle;3.50425113267281e-08!GO:0031410;cytoplasmic vesicle;4.12830174439817e-08!GO:0016023;cytoplasmic membrane-bound vesicle;6.71373799997585e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.18616917731459e-07!GO:0042773;ATP synthesis coupled electron transport;1.18616917731459e-07!GO:0016481;negative regulation of transcription;1.40682363814909e-07!GO:0009892;negative regulation of metabolic process;1.42649477668038e-07!GO:0003924;GTPase activity;1.44220120570225e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.58480487669542e-07!GO:0044453;nuclear membrane part;1.66578228304063e-07!GO:0006606;protein import into nucleus;1.76688394600066e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.82673063530405e-07!GO:0045271;respiratory chain complex I;1.82673063530405e-07!GO:0005747;mitochondrial respiratory chain complex I;1.82673063530405e-07!GO:0051186;cofactor metabolic process;1.93430598423493e-07!GO:0001558;regulation of cell growth;1.95269775128536e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48863524011983e-07!GO:0051170;nuclear import;2.51147527943804e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.06057535474514e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.32897605991932e-07!GO:0005761;mitochondrial ribosome;3.67907662229881e-07!GO:0000313;organellar ribosome;3.67907662229881e-07!GO:0030029;actin filament-based process;4.37972380492366e-07!GO:0031323;regulation of cellular metabolic process;5.57335008775516e-07!GO:0045786;negative regulation of progression through cell cycle;5.57335008775516e-07!GO:0006323;DNA packaging;5.88029986576425e-07!GO:0048475;coated membrane;6.20493010180488e-07!GO:0030117;membrane coat;6.20493010180488e-07!GO:0031252;leading edge;6.32749322584078e-07!GO:0008639;small protein conjugating enzyme activity;6.75154310001871e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.31589541934104e-07!GO:0006350;transcription;8.03561952505289e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.15333016995576e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.36102229739631e-07!GO:0042254;ribosome biogenesis and assembly;8.3981316380532e-07!GO:0007264;small GTPase mediated signal transduction;8.64405387687865e-07!GO:0004842;ubiquitin-protein ligase activity;9.98325509157175e-07!GO:0005789;endoplasmic reticulum membrane;1.01175478521524e-06!GO:0043069;negative regulation of programmed cell death;1.28999924111333e-06!GO:0005768;endosome;1.32835197603977e-06!GO:0019787;small conjugating protein ligase activity;1.47814376624476e-06!GO:0010468;regulation of gene expression;1.55176303993469e-06!GO:0009055;electron carrier activity;1.65360665925394e-06!GO:0005643;nuclear pore;1.85520444656204e-06!GO:0051246;regulation of protein metabolic process;2.07473900866079e-06!GO:0006403;RNA localization;2.12435394015909e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.13611136997493e-06!GO:0019899;enzyme binding;2.22059030317479e-06!GO:0030120;vesicle coat;2.42176263678281e-06!GO:0030662;coated vesicle membrane;2.42176263678281e-06!GO:0045333;cellular respiration;2.62576184093667e-06!GO:0050657;nucleic acid transport;2.86353882850772e-06!GO:0051236;establishment of RNA localization;2.86353882850772e-06!GO:0050658;RNA transport;2.86353882850772e-06!GO:0043066;negative regulation of apoptosis;2.86353882850772e-06!GO:0016568;chromatin modification;2.99016019454143e-06!GO:0009060;aerobic respiration;3.17075994267881e-06!GO:0043566;structure-specific DNA binding;3.24390187144175e-06!GO:0005525;GTP binding;3.26029251609155e-06!GO:0006916;anti-apoptosis;3.41753607630613e-06!GO:0005788;endoplasmic reticulum lumen;4.59912865339324e-06!GO:0044431;Golgi apparatus part;4.8653467836115e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.1253278014995e-06!GO:0045892;negative regulation of transcription, DNA-dependent;7.51439974777158e-06!GO:0019829;cation-transporting ATPase activity;7.91315993965533e-06!GO:0006732;coenzyme metabolic process;8.02667528950079e-06!GO:0015986;ATP synthesis coupled proton transport;1.10443440872906e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.10443440872906e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.12623205051631e-05!GO:0005773;vacuole;1.13001580066513e-05!GO:0008092;cytoskeletal protein binding;1.14693347052019e-05!GO:0006793;phosphorus metabolic process;1.20422398251857e-05!GO:0006796;phosphate metabolic process;1.20422398251857e-05!GO:0016881;acid-amino acid ligase activity;1.38266275390461e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.49431065187266e-05!GO:0000245;spliceosome assembly;1.65495126008683e-05!GO:0042981;regulation of apoptosis;1.92347996012479e-05!GO:0043067;regulation of programmed cell death;1.92347996012479e-05!GO:0004386;helicase activity;2.07040036591903e-05!GO:0046930;pore complex;2.12883023841983e-05!GO:0006613;cotranslational protein targeting to membrane;2.35636393095993e-05!GO:0051789;response to protein stimulus;2.56334170302322e-05!GO:0006986;response to unfolded protein;2.56334170302322e-05!GO:0030133;transport vesicle;2.57756111717917e-05!GO:0008026;ATP-dependent helicase activity;2.87470677037105e-05!GO:0005524;ATP binding;2.90239345717315e-05!GO:0006351;transcription, DNA-dependent;2.92735218745247e-05!GO:0032774;RNA biosynthetic process;2.95301230133599e-05!GO:0032561;guanyl ribonucleotide binding;3.06082742546992e-05!GO:0019001;guanyl nucleotide binding;3.06082742546992e-05!GO:0000323;lytic vacuole;3.07143529785358e-05!GO:0005764;lysosome;3.07143529785358e-05!GO:0032559;adenyl ribonucleotide binding;3.08362919460719e-05!GO:0051427;hormone receptor binding;3.32610222701884e-05!GO:0044440;endosomal part;3.54872599016187e-05!GO:0010008;endosome membrane;3.54872599016187e-05!GO:0003702;RNA polymerase II transcription factor activity;3.57235000516257e-05!GO:0016310;phosphorylation;3.62392321149389e-05!GO:0009150;purine ribonucleotide metabolic process;3.9525243771177e-05!GO:0009056;catabolic process;4.16267991099984e-05!GO:0005798;Golgi-associated vesicle;4.19908036041251e-05!GO:0006099;tricarboxylic acid cycle;4.25402943129117e-05!GO:0046356;acetyl-CoA catabolic process;4.25402943129117e-05!GO:0030554;adenyl nucleotide binding;4.29702656553984e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.34368053456269e-05!GO:0006163;purine nucleotide metabolic process;4.39283632894695e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.51558583452121e-05!GO:0009259;ribonucleotide metabolic process;4.58020479955601e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.58786449006571e-05!GO:0007243;protein kinase cascade;4.94023716563158e-05!GO:0051276;chromosome organization and biogenesis;5.06624629926947e-05!GO:0003724;RNA helicase activity;5.19183276688606e-05!GO:0016887;ATPase activity;5.31196023908303e-05!GO:0045449;regulation of transcription;5.34197894488838e-05!GO:0005770;late endosome;5.82486894368609e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.06575437379331e-05!GO:0035257;nuclear hormone receptor binding;6.38468800039494e-05!GO:0040008;regulation of growth;7.28823571042861e-05!GO:0009199;ribonucleoside triphosphate metabolic process;7.33011882138625e-05!GO:0003697;single-stranded DNA binding;7.52814660953838e-05!GO:0051028;mRNA transport;7.65226213169175e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.69696560414206e-05!GO:0065002;intracellular protein transport across a membrane;8.21300307505808e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.21300307505808e-05!GO:0009144;purine nucleoside triphosphate metabolic process;8.21300307505808e-05!GO:0016044;membrane organization and biogenesis;8.33987156007897e-05!GO:0048522;positive regulation of cellular process;8.40095625861477e-05!GO:0007049;cell cycle;8.51606233899013e-05!GO:0009142;nucleoside triphosphate biosynthetic process;9.12200276609893e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.12200276609893e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000101836675517282!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000101836675517282!GO:0005839;proteasome core complex (sensu Eukaryota);0.000101836675517282!GO:0000074;regulation of progression through cell cycle;0.000105985041052088!GO:0009152;purine ribonucleotide biosynthetic process;0.000106862233216033!GO:0009141;nucleoside triphosphate metabolic process;0.000109312692301853!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00011196814253659!GO:0051726;regulation of cell cycle;0.000114448049509573!GO:0006164;purine nucleotide biosynthetic process;0.000121707088340684!GO:0016469;proton-transporting two-sector ATPase complex;0.000128909201085422!GO:0015980;energy derivation by oxidation of organic compounds;0.000135207694104227!GO:0009260;ribonucleotide biosynthetic process;0.000148863203360688!GO:0051187;cofactor catabolic process;0.000150105511647114!GO:0045941;positive regulation of transcription;0.00015187839277897!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00015187839277897!GO:0004812;aminoacyl-tRNA ligase activity;0.00015187839277897!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00015187839277897!GO:0009109;coenzyme catabolic process;0.000161042830424182!GO:0005791;rough endoplasmic reticulum;0.000167739494645775!GO:0000151;ubiquitin ligase complex;0.000181337587212297!GO:0006084;acetyl-CoA metabolic process;0.000193118724975298!GO:0030027;lamellipodium;0.000207387793097163!GO:0042623;ATPase activity, coupled;0.000212259683486215!GO:0065004;protein-DNA complex assembly;0.00021257628539762!GO:0030867;rough endoplasmic reticulum membrane;0.000215885261215501!GO:0030518;steroid hormone receptor signaling pathway;0.000220559966899213!GO:0006333;chromatin assembly or disassembly;0.000221192670740737!GO:0046034;ATP metabolic process;0.000245182052907565!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00024546864862936!GO:0000139;Golgi membrane;0.000253795558904273!GO:0006754;ATP biosynthetic process;0.000268010879835673!GO:0006753;nucleoside phosphate metabolic process;0.000268010879835673!GO:0006364;rRNA processing;0.000272101533492255!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000286426847514187!GO:0045259;proton-transporting ATP synthase complex;0.000290897975496745!GO:0016197;endosome transport;0.000358426262883292!GO:0006355;regulation of transcription, DNA-dependent;0.000374257580723706!GO:0045045;secretory pathway;0.000380050599002202!GO:0032446;protein modification by small protein conjugation;0.000380050599002202!GO:0043038;amino acid activation;0.000380050599002202!GO:0006418;tRNA aminoacylation for protein translation;0.000380050599002202!GO:0043039;tRNA aminoacylation;0.000380050599002202!GO:0003779;actin binding;0.00040502411924095!GO:0005769;early endosome;0.000416353047139887!GO:0005667;transcription factor complex;0.000431699349158774!GO:0016072;rRNA metabolic process;0.000461305248821829!GO:0048518;positive regulation of biological process;0.000461946315940394!GO:0003690;double-stranded DNA binding;0.000530096597402583!GO:0008654;phospholipid biosynthetic process;0.00054122454255839!GO:0004298;threonine endopeptidase activity;0.000561358877260919!GO:0048471;perinuclear region of cytoplasm;0.000565412169708466!GO:0006950;response to stress;0.000565412169708466!GO:0016567;protein ubiquitination;0.000571922477124996!GO:0008186;RNA-dependent ATPase activity;0.000583558456013988!GO:0007265;Ras protein signal transduction;0.000597771421806196!GO:0006402;mRNA catabolic process;0.000676420905862569!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000705965639664483!GO:0007010;cytoskeleton organization and biogenesis;0.000705965639664483!GO:0007050;cell cycle arrest;0.000750933161907036!GO:0008250;oligosaccharyl transferase complex;0.000774270415443647!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000802772790788583!GO:0008286;insulin receptor signaling pathway;0.00080388587351536!GO:0035258;steroid hormone receptor binding;0.000872048455760803!GO:0006891;intra-Golgi vesicle-mediated transport;0.000915348963327176!GO:0005905;coated pit;0.000915348963327176!GO:0000902;cell morphogenesis;0.000965898584289541!GO:0032989;cellular structure morphogenesis;0.000965898584289541!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000974697264903261!GO:0015078;hydrogen ion transmembrane transporter activity;0.00101357510415312!GO:0031968;organelle outer membrane;0.00109369025534476!GO:0005741;mitochondrial outer membrane;0.00113405102664364!GO:0043021;ribonucleoprotein binding;0.0011368264219279!GO:0019867;outer membrane;0.00127143068576841!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00128334276682946!GO:0030522;intracellular receptor-mediated signaling pathway;0.00137163573482496!GO:0045792;negative regulation of cell size;0.00138102442653614!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00145958658087841!GO:0030308;negative regulation of cell growth;0.00158885598049164!GO:0006974;response to DNA damage stimulus;0.0016422876664417!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0016800858465985!GO:0004004;ATP-dependent RNA helicase activity;0.00169629225326211!GO:0006612;protein targeting to membrane;0.00169672405116206!GO:0043623;cellular protein complex assembly;0.00169672405116206!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00173155953213149!GO:0004576;oligosaccharyl transferase activity;0.00184510242827056!GO:0016859;cis-trans isomerase activity;0.00187104409368062!GO:0005083;small GTPase regulator activity;0.00188709040541931!GO:0030118;clathrin coat;0.00196476475744582!GO:0006892;post-Golgi vesicle-mediated transport;0.00201041230482579!GO:0006399;tRNA metabolic process;0.00203321115048993!GO:0051920;peroxiredoxin activity;0.0020405582510041!GO:0051188;cofactor biosynthetic process;0.00209892723843414!GO:0006897;endocytosis;0.0024730879827554!GO:0010324;membrane invagination;0.0024730879827554!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00255527079358718!GO:0003729;mRNA binding;0.00257017527130836!GO:0009966;regulation of signal transduction;0.00258492276290878!GO:0051168;nuclear export;0.00259921852089185!GO:0008154;actin polymerization and/or depolymerization;0.00262145791437685!GO:0030521;androgen receptor signaling pathway;0.00264708851655079!GO:0030134;ER to Golgi transport vesicle;0.00275351594231855!GO:0019843;rRNA binding;0.0027624016352779!GO:0006607;NLS-bearing substrate import into nucleus;0.00290759514788426!GO:0032940;secretion by cell;0.00293418081524678!GO:0007242;intracellular signaling cascade;0.00302683758345615!GO:0033116;ER-Golgi intermediate compartment membrane;0.00320227931494474!GO:0016363;nuclear matrix;0.00323288630082686!GO:0001726;ruffle;0.00323288630082686!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00325135624021306!GO:0006752;group transfer coenzyme metabolic process;0.00340128939722331!GO:0005885;Arp2/3 protein complex;0.0035698271717723!GO:0043488;regulation of mRNA stability;0.00402080537283083!GO:0043487;regulation of RNA stability;0.00402080537283083!GO:0051087;chaperone binding;0.00404730307236022!GO:0051101;regulation of DNA binding;0.00405156425253234!GO:0005048;signal sequence binding;0.00422364474147897!GO:0007005;mitochondrion organization and biogenesis;0.00427800704977239!GO:0030127;COPII vesicle coat;0.00429463466504877!GO:0012507;ER to Golgi transport vesicle membrane;0.00429463466504877!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00445950137104292!GO:0018196;peptidyl-asparagine modification;0.00488100548909201!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00488100548909201!GO:0048500;signal recognition particle;0.00490659061126357!GO:0051287;NAD binding;0.0050521134941315!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00572508674336668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00572508674336668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00572508674336668!GO:0031072;heat shock protein binding;0.00580587207022247!GO:0030663;COPI coated vesicle membrane;0.00582189493661102!GO:0030126;COPI vesicle coat;0.00582189493661102!GO:0030041;actin filament polymerization;0.00583464097679209!GO:0042802;identical protein binding;0.0059469981457925!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00607065339698036!GO:0051128;regulation of cellular component organization and biogenesis;0.00614800598475349!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0067178312119702!GO:0008270;zinc ion binding;0.00679794454376259!GO:0030658;transport vesicle membrane;0.00682051692055347!GO:0000059;protein import into nucleus, docking;0.00686527905061846!GO:0016491;oxidoreductase activity;0.0074658936310623!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00777894782915694!GO:0008287;protein serine/threonine phosphatase complex;0.00782336589105857!GO:0017166;vinculin binding;0.00841912633089737!GO:0005813;centrosome;0.00842539270787382!GO:0006401;RNA catabolic process;0.00853973094044879!GO:0009108;coenzyme biosynthetic process;0.00856757962493415!GO:0051252;regulation of RNA metabolic process;0.00885872963890701!GO:0009719;response to endogenous stimulus;0.00905854173727718!GO:0030137;COPI-coated vesicle;0.0093570396920495!GO:0015630;microtubule cytoskeleton;0.0100942290137359!GO:0009117;nucleotide metabolic process;0.0101387014914352!GO:0008139;nuclear localization sequence binding;0.0104971168732976!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0110738188760143!GO:0048468;cell development;0.0111154853971646!GO:0051098;regulation of binding;0.0111556649397819!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0111556649397819!GO:0045047;protein targeting to ER;0.0111556649397819!GO:0016584;nucleosome positioning;0.0115486932215074!GO:0001666;response to hypoxia;0.0116954745470326!GO:0030695;GTPase regulator activity;0.0117098804365186!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0118483511560869!GO:0045454;cell redox homeostasis;0.0119105463623499!GO:0046914;transition metal ion binding;0.0121703883366509!GO:0048487;beta-tubulin binding;0.0122717221587331!GO:0005520;insulin-like growth factor binding;0.0124586079642629!GO:0033673;negative regulation of kinase activity;0.0124977574188049!GO:0006469;negative regulation of protein kinase activity;0.0124977574188049!GO:0008097;5S rRNA binding;0.0133688587683513!GO:0022402;cell cycle process;0.0134509567917722!GO:0008312;7S RNA binding;0.0134793781925896!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0136691718538933!GO:0016853;isomerase activity;0.013828617637837!GO:0065009;regulation of a molecular function;0.0143743769093935!GO:0031901;early endosome membrane;0.0151014742145309!GO:0047485;protein N-terminus binding;0.0152393969633145!GO:0006091;generation of precursor metabolites and energy;0.0152787742638359!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0153680430984737!GO:0005762;mitochondrial large ribosomal subunit;0.0159033032665456!GO:0000315;organellar large ribosomal subunit;0.0159033032665456!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0166854889500622!GO:0016126;sterol biosynthetic process;0.0167983591960146!GO:0030132;clathrin coat of coated pit;0.0171090591796623!GO:0005100;Rho GTPase activator activity;0.0172459337509567!GO:0005869;dynactin complex;0.0172459337509567!GO:0005815;microtubule organizing center;0.0174868155230391!GO:0000785;chromatin;0.0175786217162277!GO:0045926;negative regulation of growth;0.0181680588238589!GO:0006281;DNA repair;0.0183425409959775!GO:0006376;mRNA splice site selection;0.0183425409959775!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0183425409959775!GO:0035035;histone acetyltransferase binding;0.0189114744892528!GO:0005159;insulin-like growth factor receptor binding;0.0189114744892528!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0192225178928264!GO:0030660;Golgi-associated vesicle membrane;0.0192225178928264!GO:0000314;organellar small ribosomal subunit;0.0205314280993612!GO:0005763;mitochondrial small ribosomal subunit;0.0205314280993612!GO:0004364;glutathione transferase activity;0.021235338286596!GO:0006979;response to oxidative stress;0.021235338286596!GO:0006509;membrane protein ectodomain proteolysis;0.0219335907228558!GO:0033619;membrane protein proteolysis;0.0219335907228558!GO:0016740;transferase activity;0.0222276591305647!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0222410070495461!GO:0006414;translational elongation;0.0223607899048104!GO:0008047;enzyme activator activity;0.0225247534037749!GO:0031902;late endosome membrane;0.0229150940557075!GO:0006334;nucleosome assembly;0.0231142248333187!GO:0050681;androgen receptor binding;0.0239266955026138!GO:0007004;telomere maintenance via telomerase;0.0243854323461823!GO:0003746;translation elongation factor activity;0.0245283892819727!GO:0046474;glycerophospholipid biosynthetic process;0.0245283892819727!GO:0006650;glycerophospholipid metabolic process;0.0248836388470087!GO:0001725;stress fiber;0.0254524078137063!GO:0032432;actin filament bundle;0.0254524078137063!GO:0005774;vacuolar membrane;0.0255264934469998!GO:0001516;prostaglandin biosynthetic process;0.0255805599055897!GO:0046457;prostanoid biosynthetic process;0.0255805599055897!GO:0019838;growth factor binding;0.0257404684759553!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0258219941373209!GO:0005096;GTPase activator activity;0.0259896504341144!GO:0043681;protein import into mitochondrion;0.0260034465358602!GO:0006260;DNA replication;0.0270043251308623!GO:0007167;enzyme linked receptor protein signaling pathway;0.0272346191476651!GO:0006338;chromatin remodeling;0.027874748175914!GO:0003711;transcription elongation regulator activity;0.0287549671170715!GO:0051348;negative regulation of transferase activity;0.0289984959926064!GO:0006352;transcription initiation;0.0292521352926684!GO:0019904;protein domain specific binding;0.0298484640241405!GO:0043022;ribosome binding;0.0303377153836575!GO:0030119;AP-type membrane coat adaptor complex;0.0309656561017032!GO:0008601;protein phosphatase type 2A regulator activity;0.0312639389853077!GO:0006383;transcription from RNA polymerase III promoter;0.0313924072228606!GO:0008234;cysteine-type peptidase activity;0.0317327550854612!GO:0031124;mRNA 3'-end processing;0.0321666477346228!GO:0000096;sulfur amino acid metabolic process;0.0321666477346228!GO:0008147;structural constituent of bone;0.0323106804211688!GO:0006611;protein export from nucleus;0.0324004062253818!GO:0005832;chaperonin-containing T-complex;0.032836289241423!GO:0031497;chromatin assembly;0.032836289241423!GO:0006839;mitochondrial transport;0.0337220943553609!GO:0006984;ER-nuclear signaling pathway;0.0338604422705884!GO:0015631;tubulin binding;0.0338604422705884!GO:0043034;costamere;0.0341370670316614!GO:0005862;muscle thin filament tropomyosin;0.0341763838835888!GO:0031625;ubiquitin protein ligase binding;0.0341763838835888!GO:0030100;regulation of endocytosis;0.0346038375773092!GO:0018202;peptidyl-histidine modification;0.0353175344827217!GO:0022415;viral reproductive process;0.0356742567015937!GO:0040029;regulation of gene expression, epigenetic;0.0358741061638029!GO:0046822;regulation of nucleocytoplasmic transport;0.0361020515817289!GO:0008610;lipid biosynthetic process;0.0362800425119318!GO:0046467;membrane lipid biosynthetic process;0.0373640397505628!GO:0030384;phosphoinositide metabolic process;0.0376787129055531!GO:0005099;Ras GTPase activator activity;0.0376801001462239!GO:0006595;polyamine metabolic process;0.0376801001462239!GO:0007266;Rho protein signal transduction;0.0376880700389057!GO:0050811;GABA receptor binding;0.0379069358449496!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0388150279393855!GO:0051270;regulation of cell motility;0.0403321257554528!GO:0003682;chromatin binding;0.041243524220065!GO:0030659;cytoplasmic vesicle membrane;0.041243524220065!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0416256754300113!GO:0030131;clathrin adaptor complex;0.0426348571010721!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0435580824713011!GO:0009967;positive regulation of signal transduction;0.0440082733386681!GO:0016779;nucleotidyltransferase activity;0.0441502911342805!GO:0005765;lysosomal membrane;0.0448968539286311!GO:0043204;perikaryon;0.0454801200675156!GO:0005938;cell cortex;0.0455837215421702!GO:0007030;Golgi organization and biogenesis;0.0459531124164592!GO:0009893;positive regulation of metabolic process;0.0459531124164592!GO:0051235;maintenance of localization;0.0463273528606696!GO:0006405;RNA export from nucleus;0.0467521795176511!GO:0012506;vesicle membrane;0.0478749958670549!GO:0051540;metal cluster binding;0.0482232614583511!GO:0051536;iron-sulfur cluster binding;0.0482232614583511!GO:0000781;chromosome, telomeric region;0.0483709473113085!GO:0043407;negative regulation of MAP kinase activity;0.0486219916925666!GO:0032507;maintenance of cellular protein localization;0.0489896283235308!GO:0000118;histone deacetylase complex;0.0495355757935649 | |||
|sample_id=10020 | |sample_id=10020 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=MYBL2:2.31400798758;STAT1,3:2.15095398147;MZF1:2.07307034896;MAZ:2.01175653599;SRF:1.96655232095;EP300:1.94642289819;HBP1_HMGB_SSRP1_UBTF:1.9403983452;PATZ1:1.91250315084;NFATC1..3:1.85941593778;GTF2I:1.72692042216;SP1:1.66172489427;MED-1{core}:1.54924685589;PRDM1:1.50089958127;HIC1:1.47671633308;RREB1:1.4760200688;TLX1..3_NFIC{dimer}:1.46530980472;EGR1..3:1.45801217683;AR:1.45390350658;SPZ1:1.45088278665;SMAD1..7,9:1.41396363771;RFX2..5_RFXANK_RFXAP:1.41331431544;RFX1:1.39375629198;TFAP4:1.36183577676;GATA4:1.33810502211;TFAP2{A,C}:1.29295710173;XCPE1{core}:1.2602546507;MYFfamily:1.2152965071;RBPJ:1.15863610922;ZIC1..3:1.13961545266;FOX{D1,D2}:1.13885563171;PAX5:1.1336942833;GCM1,2:1.12239731413;TFCP2:1.10266169806;TFAP2B:1.00460954336;FOXA2:1.00002078224;IKZF1:0.999816634236;ZNF423:0.992430496358;MTF1:0.98704884016;BREu{core}:0.972773282727;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.95126340079;ZNF238:0.944909131493;GTF2A1,2:0.922923257438;GFI1B:0.918736582462;BPTF:0.917496403417;STAT2,4,6:0.855959039283;HMX1:0.822609473605;MEF2{A,B,C,D}:0.821178688873;TEAD1:0.818429036729;HAND1,2:0.791259633336;NR6A1:0.778769649099;EBF1:0.773665132306;ESR1:0.767648573812;TBP:0.744706256029;TBX4,5:0.708846845529;MTE{core}:0.705740824723;SOX5:0.695544061172;NR1H4:0.695072534237;ATF6:0.691655359051;FOXO1,3,4:0.674865475514;PAX1,9:0.660396466819;GZF1:0.652351705172;POU6F1:0.63743810412;NR3C1:0.627602316342;RXRA_VDR{dimer}:0.612430844444;IRF7:0.599597646834;NKX6-1,2:0.586381029036;NHLH1,2:0.527054943996;MAFB:0.517396283771;IRF1,2:0.515932585255;CREB1:0.506210047063;T:0.47483149925;KLF4:0.464910560903;NR5A1,2:0.454924186818;ZNF384:0.451472046897;XBP1:0.434879378621;ZFP161:0.43243308886;HNF1A:0.431111358877;TLX2:0.403807133974;GATA6:0.380838366522;ESRRA:0.373806422964;FOXN1:0.362049489425;REST:0.350347834669;PBX1:0.33491618889;FOXP3:0.32716298922;HSF1,2:0.323090480568;TGIF1:0.305718339774;ATF4:0.304840411214;FOXM1:0.302296406351;PAX6:0.301002575981;ADNP_IRX_SIX_ZHX:0.274568064238;JUN:0.273931741912;AHR_ARNT_ARNT2:0.265130052196;CDC5L:0.221396338055;HNF4A_NR2F1,2:0.2180199665;ETS1,2:0.199266664689;ATF2:0.173824387521;NFIX:0.139983615066;RXR{A,B,G}:0.13547042974;ZNF148:0.133004043057;HLF:0.13098965605;SNAI1..3:0.0976225832481;SPIB:0.0724738129067;SREBF1,2:0.064948015681;SOX2:0.0573713835555;ZBTB6:0.0552895541804;FOXD3:0.0537983430412;POU5F1:0.0384549931045;ZNF143:0.0334780142351;TEF:0.0334488357379;HIF1A:0.00976969648324;CUX2:0.00464383108045;HOX{A6,A7,B6,B7}:-0.012285380591;POU2F1..3:-0.0510629362728;LMO2:-0.0550602076981;ZEB1:-0.0592565299422;IKZF2:-0.0605169242789;NFIL3:-0.0759748309278;RUNX1..3:-0.118463422905;NKX2-1,4:-0.119678589724;NKX3-2:-0.137865552719;NRF1:-0.148303484567;SPI1:-0.148644682706;SOX17:-0.150435115303;PRRX1,2:-0.155151814203;bHLH_family:-0.182273554172;CDX1,2,4:-0.187589970783;CEBPA,B_DDIT3:-0.192846600301;TP53:-0.204736164652;HES1:-0.20533945386;RORA:-0.20921744645;ATF5_CREB3:-0.217710403137;CRX:-0.227749092454;NKX2-3_NKX2-5:-0.232093460364;GFI1:-0.248819855888;FOX{F1,F2,J1}:-0.251320642874;UFEwm:-0.254598059782;GLI1..3:-0.260652720622;POU3F1..4:-0.270125540619;ARID5B:-0.272239767115;SOX{8,9,10}:-0.288644626964;FOXL1:-0.323495303119;NFKB1_REL_RELA:-0.33231850405;NFY{A,B,C}:-0.360581470156;LEF1_TCF7_TCF7L1,2:-0.362559922546;ALX4:-0.372965925389;EVI1:-0.389905766133;TOPORS:-0.396812126406;FOSL2:-0.408668993545;LHX3,4:-0.412133715245;ELF1,2,4:-0.415750785206;NFE2L2:-0.417120313399;NANOG:-0.444856999724;DBP:-0.452249357315;HMGA1,2:-0.457471880726;FOXQ1:-0.498490900387;HOX{A4,D4}:-0.509412505786;NFE2L1:-0.53465867264;NFE2:-0.536921782698;VSX1,2:-0.543614001945;MYOD1:-0.54578248024;DMAP1_NCOR{1,2}_SMARC:-0.557361125677;FOS_FOS{B,L1}_JUN{B,D}:-0.567146821548;POU1F1:-0.578503736836;HOX{A5,B5}:-0.596758546258;NKX2-2,8:-0.624270638304;AIRE:-0.630630679071;BACH2:-0.663919530655;EN1,2:-0.688734733454;E2F1..5:-0.693975471951;PAX3,7:-0.727655662967;YY1:-0.810780971499;PAX8:-0.824663822462;ELK1,4_GABP{A,B1}:-0.828487464501;FOXP1:-0.892842731841;PAX2:-0.895317698234;TFDP1:-0.903876540259;FOX{I1,J2}:-0.931971601095;NANOG{mouse}:-0.963956525896;TAL1_TCF{3,4,12}:-0.968237353147;MYB:-1.12552506764;OCT4_SOX2{dimer}:-1.17883573352;PITX1..3:-1.18263796169;ALX1:-1.22623047625;PDX1:-1.23329383015;ZBTB16:-1.24870619308;STAT5{A,B}:-1.3391889399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33975334092;ONECUT1,2:-1.48207394008;PPARG:-1.66499733815;NKX3-1:-1.69196997625;PAX4:-1.70727542092;HOXA9_MEIS1:-2.24051348334 | |top_motifs=MYBL2:2.31400798758;STAT1,3:2.15095398147;MZF1:2.07307034896;MAZ:2.01175653599;SRF:1.96655232095;EP300:1.94642289819;HBP1_HMGB_SSRP1_UBTF:1.9403983452;PATZ1:1.91250315084;NFATC1..3:1.85941593778;GTF2I:1.72692042216;SP1:1.66172489427;MED-1{core}:1.54924685589;PRDM1:1.50089958127;HIC1:1.47671633308;RREB1:1.4760200688;TLX1..3_NFIC{dimer}:1.46530980472;EGR1..3:1.45801217683;AR:1.45390350658;SPZ1:1.45088278665;SMAD1..7,9:1.41396363771;RFX2..5_RFXANK_RFXAP:1.41331431544;RFX1:1.39375629198;TFAP4:1.36183577676;GATA4:1.33810502211;TFAP2{A,C}:1.29295710173;XCPE1{core}:1.2602546507;MYFfamily:1.2152965071;RBPJ:1.15863610922;ZIC1..3:1.13961545266;FOX{D1,D2}:1.13885563171;PAX5:1.1336942833;GCM1,2:1.12239731413;TFCP2:1.10266169806;TFAP2B:1.00460954336;FOXA2:1.00002078224;IKZF1:0.999816634236;ZNF423:0.992430496358;MTF1:0.98704884016;BREu{core}:0.972773282727;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.95126340079;ZNF238:0.944909131493;GTF2A1,2:0.922923257438;GFI1B:0.918736582462;BPTF:0.917496403417;STAT2,4,6:0.855959039283;HMX1:0.822609473605;MEF2{A,B,C,D}:0.821178688873;TEAD1:0.818429036729;HAND1,2:0.791259633336;NR6A1:0.778769649099;EBF1:0.773665132306;ESR1:0.767648573812;TBP:0.744706256029;TBX4,5:0.708846845529;MTE{core}:0.705740824723;SOX5:0.695544061172;NR1H4:0.695072534237;ATF6:0.691655359051;FOXO1,3,4:0.674865475514;PAX1,9:0.660396466819;GZF1:0.652351705172;POU6F1:0.63743810412;NR3C1:0.627602316342;RXRA_VDR{dimer}:0.612430844444;IRF7:0.599597646834;NKX6-1,2:0.586381029036;NHLH1,2:0.527054943996;MAFB:0.517396283771;IRF1,2:0.515932585255;CREB1:0.506210047063;T:0.47483149925;KLF4:0.464910560903;NR5A1,2:0.454924186818;ZNF384:0.451472046897;XBP1:0.434879378621;ZFP161:0.43243308886;HNF1A:0.431111358877;TLX2:0.403807133974;GATA6:0.380838366522;ESRRA:0.373806422964;FOXN1:0.362049489425;REST:0.350347834669;PBX1:0.33491618889;FOXP3:0.32716298922;HSF1,2:0.323090480568;TGIF1:0.305718339774;ATF4:0.304840411214;FOXM1:0.302296406351;PAX6:0.301002575981;ADNP_IRX_SIX_ZHX:0.274568064238;JUN:0.273931741912;AHR_ARNT_ARNT2:0.265130052196;CDC5L:0.221396338055;HNF4A_NR2F1,2:0.2180199665;ETS1,2:0.199266664689;ATF2:0.173824387521;NFIX:0.139983615066;RXR{A,B,G}:0.13547042974;ZNF148:0.133004043057;HLF:0.13098965605;SNAI1..3:0.0976225832481;SPIB:0.0724738129067;SREBF1,2:0.064948015681;SOX2:0.0573713835555;ZBTB6:0.0552895541804;FOXD3:0.0537983430412;POU5F1:0.0384549931045;ZNF143:0.0334780142351;TEF:0.0334488357379;HIF1A:0.00976969648324;CUX2:0.00464383108045;HOX{A6,A7,B6,B7}:-0.012285380591;POU2F1..3:-0.0510629362728;LMO2:-0.0550602076981;ZEB1:-0.0592565299422;IKZF2:-0.0605169242789;NFIL3:-0.0759748309278;RUNX1..3:-0.118463422905;NKX2-1,4:-0.119678589724;NKX3-2:-0.137865552719;NRF1:-0.148303484567;SPI1:-0.148644682706;SOX17:-0.150435115303;PRRX1,2:-0.155151814203;bHLH_family:-0.182273554172;CDX1,2,4:-0.187589970783;CEBPA,B_DDIT3:-0.192846600301;TP53:-0.204736164652;HES1:-0.20533945386;RORA:-0.20921744645;ATF5_CREB3:-0.217710403137;CRX:-0.227749092454;NKX2-3_NKX2-5:-0.232093460364;GFI1:-0.248819855888;FOX{F1,F2,J1}:-0.251320642874;UFEwm:-0.254598059782;GLI1..3:-0.260652720622;POU3F1..4:-0.270125540619;ARID5B:-0.272239767115;SOX{8,9,10}:-0.288644626964;FOXL1:-0.323495303119;NFKB1_REL_RELA:-0.33231850405;NFY{A,B,C}:-0.360581470156;LEF1_TCF7_TCF7L1,2:-0.362559922546;ALX4:-0.372965925389;EVI1:-0.389905766133;TOPORS:-0.396812126406;FOSL2:-0.408668993545;LHX3,4:-0.412133715245;ELF1,2,4:-0.415750785206;NFE2L2:-0.417120313399;NANOG:-0.444856999724;DBP:-0.452249357315;HMGA1,2:-0.457471880726;FOXQ1:-0.498490900387;HOX{A4,D4}:-0.509412505786;NFE2L1:-0.53465867264;NFE2:-0.536921782698;VSX1,2:-0.543614001945;MYOD1:-0.54578248024;DMAP1_NCOR{1,2}_SMARC:-0.557361125677;FOS_FOS{B,L1}_JUN{B,D}:-0.567146821548;POU1F1:-0.578503736836;HOX{A5,B5}:-0.596758546258;NKX2-2,8:-0.624270638304;AIRE:-0.630630679071;BACH2:-0.663919530655;EN1,2:-0.688734733454;E2F1..5:-0.693975471951;PAX3,7:-0.727655662967;YY1:-0.810780971499;PAX8:-0.824663822462;ELK1,4_GABP{A,B1}:-0.828487464501;FOXP1:-0.892842731841;PAX2:-0.895317698234;TFDP1:-0.903876540259;FOX{I1,J2}:-0.931971601095;NANOG{mouse}:-0.963956525896;TAL1_TCF{3,4,12}:-0.968237353147;MYB:-1.12552506764;OCT4_SOX2{dimer}:-1.17883573352;PITX1..3:-1.18263796169;ALX1:-1.22623047625;PDX1:-1.23329383015;ZBTB16:-1.24870619308;STAT5{A,B}:-1.3391889399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33975334092;ONECUT1,2:-1.48207394008;PPARG:-1.66499733815;NKX3-1:-1.69196997625;PAX4:-1.70727542092;HOXA9_MEIS1:-2.24051348334 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10020-101D2;search_select_hide=table117:FF:10020-101D2 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | ovary, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10626 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10626
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10626
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0135 |
| 10 | 10 | 0.0222 |
| 100 | 100 | 0.148 |
| 101 | 101 | 0.674 |
| 102 | 102 | 0.405 |
| 103 | 103 | 0.163 |
| 104 | 104 | 0.424 |
| 105 | 105 | 0.303 |
| 106 | 106 | 0.378 |
| 107 | 107 | 0.925 |
| 108 | 108 | 0.633 |
| 109 | 109 | 0.0333 |
| 11 | 11 | 0.0298 |
| 110 | 110 | 0.143 |
| 111 | 111 | 0.00641 |
| 112 | 112 | 0.719 |
| 113 | 113 | 0.652 |
| 114 | 114 | 0.00773 |
| 115 | 115 | 0.688 |
| 116 | 116 | 0.651 |
| 117 | 117 | 0.0183 |
| 118 | 118 | 0.168 |
| 119 | 119 | 0.0554 |
| 12 | 12 | 0.657 |
| 120 | 120 | 0.0596 |
| 121 | 121 | 0.924 |
| 122 | 122 | 0.929 |
| 123 | 123 | 0.00194 |
| 124 | 124 | 0.492 |
| 125 | 125 | 0.142 |
| 126 | 126 | 0.909 |
| 127 | 127 | 0.261 |
| 128 | 128 | 0.619 |
| 129 | 129 | 0.255 |
| 13 | 13 | 0.066 |
| 130 | 130 | 0.251 |
| 131 | 131 | 0.136 |
| 132 | 132 | 0.294 |
| 133 | 133 | 0.0345 |
| 134 | 134 | 0.215 |
| 135 | 135 | 0.183 |
| 136 | 136 | 0.378 |
| 137 | 137 | 0.782 |
| 138 | 138 | 0.303 |
| 139 | 139 | 0.0623 |
| 14 | 14 | 0.734 |
| 140 | 140 | 0.212 |
| 141 | 141 | 0.479 |
| 142 | 142 | 0.787 |
| 143 | 143 | 0.00554 |
| 144 | 144 | 0.829 |
| 145 | 145 | 0.178 |
| 146 | 146 | 0.58 |
| 147 | 147 | 0.769 |
| 148 | 148 | 0.0234 |
| 149 | 149 | 0.818 |
| 15 | 15 | 0.0911 |
| 150 | 150 | 0.358 |
| 151 | 151 | 0.615 |
| 152 | 152 | 0.841 |
| 153 | 153 | 0.719 |
| 154 | 154 | 0.47 |
| 155 | 155 | 0.138 |
| 156 | 156 | 0.869 |
| 157 | 157 | 0.958 |
| 158 | 158 | 0.34 |
| 159 | 159 | 0.667 |
| 16 | 16 | 0.101 |
| 160 | 160 | 0.629 |
| 161 | 161 | 0.305 |
| 162 | 162 | 0.611 |
| 163 | 163 | 0.832 |
| 164 | 164 | 0.0869 |
| 165 | 165 | 0.769 |
| 166 | 166 | 0.751 |
| 167 | 167 | 0.0261 |
| 168 | 168 | 0.805 |
| 169 | 169 | 0.172 |
| 17 | 17 | 0.224 |
| 18 | 18 | 0.0803 |
| 19 | 19 | 0.907 |
| 2 | 2 | 0.358 |
| 20 | 20 | 0.259 |
| 21 | 21 | 0.142 |
| 22 | 22 | 0.968 |
| 23 | 23 | 0.676 |
| 24 | 24 | 0.677 |
| 25 | 25 | 0.393 |
| 26 | 26 | 0.0172 |
| 27 | 27 | 0.826 |
| 28 | 28 | 0.662 |
| 29 | 29 | 0.0159 |
| 3 | 3 | 0.0831 |
| 30 | 30 | 0.0652 |
| 31 | 31 | 0.725 |
| 32 | 32 | 0.473 |
| 33 | 33 | 0.291 |
| 34 | 34 | 0.367 |
| 35 | 35 | 0.172 |
| 36 | 36 | 0.0179 |
| 37 | 37 | 0.0794 |
| 38 | 38 | 0.332 |
| 39 | 39 | 0.566 |
| 4 | 4 | 0.341 |
| 40 | 40 | 0.0418 |
| 41 | 41 | 0.103 |
| 42 | 42 | 0.274 |
| 43 | 43 | 0.144 |
| 44 | 44 | 0.427 |
| 45 | 45 | 0.485 |
| 46 | 46 | 0.0515 |
| 47 | 47 | 0.0368 |
| 48 | 48 | 0.118 |
| 49 | 49 | 0.072 |
| 5 | 5 | 0.386 |
| 50 | 50 | 0.872 |
| 51 | 51 | 0.552 |
| 52 | 52 | 0.528 |
| 53 | 53 | 0.613 |
| 54 | 54 | 0.713 |
| 55 | 55 | 0.283 |
| 56 | 56 | 0.595 |
| 57 | 57 | 0.0613 |
| 58 | 58 | 0.322 |
| 59 | 59 | 0.771 |
| 6 | 6 | 0.587 |
| 60 | 60 | 0.649 |
| 61 | 61 | 0.473 |
| 62 | 62 | 0.135 |
| 63 | 63 | 0.248 |
| 64 | 64 | 0.14 |
| 65 | 65 | 0.305 |
| 66 | 66 | 0.0983 |
| 67 | 67 | 0.621 |
| 68 | 68 | 0.947 |
| 69 | 69 | 0.311 |
| 7 | 7 | 0.314 |
| 70 | 70 | 0.0173 |
| 71 | 71 | 0.0244 |
| 72 | 72 | 0.751 |
| 73 | 73 | 0.107 |
| 74 | 74 | 0.549 |
| 75 | 75 | 0.014 |
| 76 | 76 | 0.0956 |
| 77 | 77 | 0.796 |
| 78 | 78 | 0.0132 |
| 79 | 79 | 0.852 |
| 8 | 8 | 0.104 |
| 80 | 80 | 0.391 |
| 81 | 81 | 0.36 |
| 82 | 82 | 0.451 |
| 83 | 83 | 0.94 |
| 84 | 84 | 0.606 |
| 85 | 85 | 0.661 |
| 86 | 86 | 0.493 |
| 87 | 87 | 0.0451 |
| 88 | 88 | 0.804 |
| 89 | 89 | 0.64 |
| 9 | 9 | 0.551 |
| 90 | 90 | 0.015 |
| 91 | 91 | 0.557 |
| 92 | 92 | 0.579 |
| 93 | 93 | 0.117 |
| 94 | 94 | 0.0198 |
| 95 | 95 | 0.0154 |
| 96 | 96 | 0.501 |
| 97 | 97 | 0.634 |
| 98 | 98 | 0.0473 |
| 99 | 99 | 0.815 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10626
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010020 human ovary - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010020 (human ovary - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
